Citrus Sinensis ID: 005432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 697 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9Q8 | 684 | Probable pectin methyltra | yes | no | 0.978 | 0.997 | 0.731 | 0.0 | |
| Q8GYW9 | 603 | Probable methyltransferas | no | no | 0.837 | 0.968 | 0.549 | 0.0 | |
| Q3EC77 | 606 | Probable methyltransferas | no | no | 0.842 | 0.968 | 0.557 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.728 | 0.831 | 0.366 | 1e-104 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.819 | 0.933 | 0.364 | 1e-103 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.692 | 0.794 | 0.374 | 1e-102 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.724 | 0.810 | 0.377 | 1e-102 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.717 | 0.733 | 0.366 | 3e-97 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.724 | 0.727 | 0.339 | 4e-94 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.714 | 0.760 | 0.361 | 4e-93 |
| >sp|Q9C9Q8|PMTT_ARATH Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/697 (73%), Positives = 585/697 (83%), Gaps = 15/697 (2%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MS PL RG+SG+R+S + D D +MK++ E+ ST+ + L LRFPF FL N
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERA-----RSTENNNLTLRFPFGFL-FSNQ 54
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
+S G ENGF++D +S+ RSR +LFLK SL+ IV +AL GSFWWTISISTSS
Sbjct: 55 SSSKHGGGGENGFSADPYSA---RSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSS 111
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RGH+YH YRRLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYS
Sbjct: 112 RGHVYHNYRRLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYS 171
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
NGDE DR CG KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRM
Sbjct: 172 NGDENDRFCGPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRM 231
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAH
Sbjct: 232 MMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAH 290
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
L SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DW
Sbjct: 291 LLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDW 350
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
DQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++Q
Sbjct: 351 DQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQ 406
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R
Sbjct: 407 QDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGR 466
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPS
Sbjct: 467 TRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPS 526
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+WC
Sbjct: 527 PPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNWC 586
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 659
E FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 587 EPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVEK 646
Query: 660 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 647 ARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/608 (54%), Positives = 431/608 (70%), Gaps = 24/608 (3%)
Query: 91 MLFLKFSLIAIVFLALTGS-FWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGS 149
+LFL +IA++ + + S T S + +IY Y R++EQ D D+ SLG
Sbjct: 16 LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75
Query: 150 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCG-QELKQHCLVLPPVKYRIP 208
+R K+ C ++ +NYVPC+N + E DR+C ++ CLV PP Y+IP
Sbjct: 76 NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFAREEERCLVRPPRDYKIP 124
Query: 209 LRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSA-SLIFDGVEDYSHQI 267
LRWP GRD+IW NVKIT + LSSG++TKR+M+LEE QI+F S LIFDGV+DY+ QI
Sbjct: 125 LRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQI 184
Query: 268 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327
AEMIGL +++ F AG+RT+LDIGCG+GSFGAHL S ++ +CIA YE SGSQVQL LER
Sbjct: 185 AEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALER 244
Query: 328 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387
GLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD KD +LLLEVDRVLKPGGYFV TSP
Sbjct: 245 GLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDRVLKPGGYFVLTSPT 304
Query: 388 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSI 447
+ Q + + V + + +CW L QQDET +W+KT+ +CYSSR S P +
Sbjct: 305 SKAQGNSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADPNCYSSRSQASIP-V 363
Query: 448 CSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-LNKNELAVYGVHPEEFAE 506
C + V PYY PL PCI GT+++RWIPI+ R SRA+ + +EL ++G+ PEEF E
Sbjct: 364 CKDDDSV--PYYHPLVPCISGTKSKRWIPIQNR----SRASGTSLSELEIHGIKPEEFDE 417
Query: 507 DTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK 566
D + W++A+ N+WSLL+PLIFSDHPKRPGDEDP PP+ M+RN +DMNA +G N ALL +
Sbjct: 418 DIQVWRSALKNYWSLLTPLIFSDHPKRPGDEDPVPPFYMIRNAMDMNARYGNLNQALLNQ 477
Query: 567 GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 626
GKSVWVMNVVP N LP+ILDRGF G LHDWCE FPTYPRTYD++HA LL+ S
Sbjct: 478 GKSVWVMNVVPVKARNTLPIILDRGFTGALHDWCEPFPTYPRTYDMLHANELLTHLSS-- 535
Query: 627 HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLI 686
RCS +D+F E+DRILRPEGWV++ D +IE AR L R++W+ARVI+I+ SD+RLL+
Sbjct: 536 ERCSLMDLFLEMDRILRPEGWVVLSDKLGVIEMARTLAARVRWEARVIDIQDGSDQRLLV 595
Query: 687 CQKPFFKR 694
CQKP K+
Sbjct: 596 CQKPLLKK 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q3EC77|PMT5_ARATH Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/615 (55%), Positives = 438/615 (71%), Gaps = 28/615 (4%)
Query: 83 PRSRQNFTMLFLKFSLIAIV-FLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWD 141
PR R +LF ++A+V LA S + S S++ +IY YRR++EQ D D
Sbjct: 17 PRIR---GLLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKEQAAVDYLD 73
Query: 142 IGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL-KQHCLVL 200
+ +SLG+S K+ FC ++ E+YVPC+N + NL G G+E+DRHC E K+ C+V
Sbjct: 74 LRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFEREKERCVVR 132
Query: 201 PPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSA-SLIFDG 259
PP Y+IPLRWP GRD+IW NVKIT + LSSG++T R+M+LEE QI+F S L+FDG
Sbjct: 133 PPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHSEDGLVFDG 192
Query: 260 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 319
V+DY+ QIAEMIGL +++ F AGVRT+LDIGCG+GSFGAHL S +L+ +CIA YEA+GS
Sbjct: 193 VKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICIAEYEATGS 252
Query: 320 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG 379
QVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG WD KD +LLLEVDRVLKPGG
Sbjct: 253 QVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAMLLLEVDRVLKPGG 312
Query: 380 YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSR 439
YFV TSP Q L + + V + + +CW L +QQDET +W+KTS +SCYSSR
Sbjct: 313 YFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFLWQKTSDSSCYSSR 372
Query: 440 KPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGV 499
S P +C G+ V PYY PL PCI GT ++RWI I+ R + A L ++G
Sbjct: 373 SQASIP-LCKDGDSV--PYYHPLVPCISGTTSKRWISIQNRS---AVAGTTSAGLEIHG- 425
Query: 500 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 559
K+A+ N+WSLL+PLIFSDHPKRPGDEDP PP+NM+RNV+DM+A FG
Sbjct: 426 ------------KSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMHARFGNL 473
Query: 560 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 619
N+ALL++GKS WVMNVVP N LP+ILDRGF GVLHDWCE FPTYPRTYD++HA LL
Sbjct: 474 NAALLDEGKSAWVMNVVPVNARNTLPIILDRGFAGVLHDWCEPFPTYPRTYDMLHANELL 533
Query: 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 679
+ S RCS +D+F E+DRILRPEGWV++ D +IE ARAL R++W+ARVI+++
Sbjct: 534 THLSS--ERCSLMDLFLEMDRILRPEGWVVLSDKVGVIEMARALAARVRWEARVIDLQDG 591
Query: 680 SDERLLICQKPFFKR 694
SD+RLL+CQKPF K+
Sbjct: 592 SDQRLLVCQKPFIKK 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/557 (36%), Positives = 309/557 (55%), Gaps = 49/557 (8%)
Query: 153 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 207
+ C + +PC + + L L S + +RHC E + +CL+ PP Y+I
Sbjct: 77 RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKI 136
Query: 208 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 266
P++WP RD +W N+ T L+ + M+++ E+I+F F G + Y
Sbjct: 137 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIAS 193
Query: 267 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326
+A M+ N +RT LD+GCG SFG +L + E++TM +A + +Q+Q LE
Sbjct: 194 MANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALE 253
Query: 327 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386
RG+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++S
Sbjct: 254 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSS- 312
Query: 387 LTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPS 446
P+A+ +++E+ + W + V +CW + +++++TV+W+K CY R+PG+ P
Sbjct: 313 ---PEAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPP 369
Query: 447 ICSKGNDVESPYYRPLQPCIG-------GTRNRRWIPIEERRNWPSRANLNKNELAVYGV 499
+C+ +D ++ Y ++ CI T+ P WP+R LA +G
Sbjct: 370 LCNSDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAP------WPARLTSPPPRLADFGY 423
Query: 500 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 559
+ F +DTE W+ V +W LLSP I SD VRN++DM A G F
Sbjct: 424 STDIFEKDTETWRQRVDTYWDLLSPKIQSD---------------TVRNIMDMKASMGSF 468
Query: 560 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 619
+AL K K VWVMNVVP G N L +I DRG +G +H WCEAF TYPRTYDL+HA ++
Sbjct: 469 AAAL--KEKDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAWDII 526
Query: 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDA----RVIE 675
S + CS D+ E+DRILRP G+++IRD +++ + L W+A E
Sbjct: 527 S--DIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVDLVKKYLKALHWEAVETKTASE 584
Query: 676 IESNSDERLLICQKPFF 692
+ +SD +LI QK +
Sbjct: 585 SDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 227/623 (36%), Positives = 340/623 (54%), Gaps = 52/623 (8%)
Query: 96 FSLIAIVFLALTG--SFWWTISISTSSR-GHIYHGYRRLQEQLVSDLWDIGEISLGSSR- 151
F+ + + F+AL G ++ S + SR + G + L + +I L SR
Sbjct: 16 FTYVLVGFIALLGLTCLYYGSSFAPGSRKSDEFDGSNNRVRTGIGSLRN-RDIVLAVSRF 74
Query: 152 --SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQHCLVLPPVK 204
K + C +PC + + + L L S + + HC E + +CLV PPV
Sbjct: 75 EVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVG 134
Query: 205 YRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDY 263
Y+IPLRWP RD +W +N+ T L+ + M++ ++I+F F +G + Y
Sbjct: 135 YKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKY 191
Query: 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 323
+A+M+ + +R +LD+GCG SFGA+L S +++ M +A + +Q+Q
Sbjct: 192 IVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQF 251
Query: 324 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 383
LERG+P+ +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DR+L+PGGYFV+
Sbjct: 252 ALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 311
Query: 384 TSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 443
+S P+A+ + EN+K N + D + +CW++V+++D++V+W K SCY R PG
Sbjct: 312 SS----PEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGV 367
Query: 444 GPSICSKGNDVESPYYRPLQPCIGGTRNR----RWIPIEERRNWPSRANLNKNELAVYGV 499
P +C G+D ++ + ++ CI R RW + WP R L GV
Sbjct: 368 LPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP---WPRRLTAPPPRLEEIGV 424
Query: 500 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGF 559
PE+F EDTE W+ V +W LL P++ N +RNV+DM+++ GGF
Sbjct: 425 TPEQFREDTETWRLRVIEYWKLLKPMVQK---------------NSIRNVMDMSSNLGGF 469
Query: 560 NSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 619
+AL K VWVMNV+P + + +I DRG +G HDWCEAF TYPRT+DL+HA
Sbjct: 470 AAAL--NDKDVWVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTF 527
Query: 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE-- 677
+ E+ R CS D+ E+DRILRPEG+VIIRDT I + T LKWD E
Sbjct: 528 T-ETQARG-CSFEDLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPK 585
Query: 678 ----SNSDERLLICQKPFFKRQA 696
S DE +LI +K + A
Sbjct: 586 GDPLSTKDEIVLIARKKLWSLPA 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/534 (37%), Positives = 302/534 (56%), Gaps = 51/534 (9%)
Query: 153 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 207
+ C + +PC + + L L S + +RHC E + +CL+ PP Y++
Sbjct: 74 RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKV 133
Query: 208 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 266
P++WP RD +W N+ T L+ + M+++ ++I+F F G + Y
Sbjct: 134 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY--- 187
Query: 267 IAEMIGLRNESNFILAG---VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 323
IA M + N N +L +RT+ D+GCG SFG +L S ++LTM +A + +Q+Q
Sbjct: 188 IASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQF 247
Query: 324 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 383
LERG+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF +
Sbjct: 248 ALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAY 307
Query: 384 TSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 443
+S P+A+ +++E+ + W + VE +CW++ +++++TV+W+K CY R+PG+
Sbjct: 308 SS----PEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGT 363
Query: 444 GPSICSKGNDVESPYYRPLQPCIGG-------TRNRRWIPIEERRNWPSRANLNKNELAV 496
P +C ND ++ + ++ CI T+ P WP+R LA
Sbjct: 364 QPPLCRSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAP------WPARLTSPPPRLAD 417
Query: 497 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHF 556
+G F +DTE W+ V +W LLSP I SD VRN++DM A
Sbjct: 418 FGYSTGMFEKDTELWRQRVDTYWDLLSPRIESD---------------TVRNIMDMKASM 462
Query: 557 GGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 616
G F +AL E K VWVMNVVP G N L +I DRG +G +H WCEAF TYPRTYDL+HA
Sbjct: 463 GSFAAALKE--KDVWVMNVVPEDGPNTLKLIYDRGLMGAVHSWCEAFSTYPRTYDLLHAW 520
Query: 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 670
++S + CS +D+ E+DRILRP G++IIRD R+++ + L W+
Sbjct: 521 DIIS--DIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVDFVKKYLKALHWE 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/538 (37%), Positives = 302/538 (56%), Gaps = 33/538 (6%)
Query: 152 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 206
+K C + +PC + + L L S + +RHC E + +CL+ PP Y+
Sbjct: 81 AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140
Query: 207 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 265
+P++WP RD +W +N+ T L+ + M+ + E+ISF F G + Y
Sbjct: 141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197
Query: 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 325
IA M+ N+ +RT+LD+GCG SFGA+L + +++TM +A + +Q+Q L
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257
Query: 326 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385
ERG+PA +G +K+LPYPS SF+ HC+RC +DW Q+DG+LLLE+DRVL+PGGYF ++S
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSS 317
Query: 386 PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGP 445
P+A+ +++EN K W + VE +CW + ++++TVVW+K CY R+PG+ P
Sbjct: 318 ----PEAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQP 373
Query: 446 SICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEF 504
+C D ++ ++ CI +++ WP+R + LA +G + F
Sbjct: 374 PLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMF 433
Query: 505 AEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALL 564
+DTE WK V ++W+L+S + S N VRN++DM AH G F +AL
Sbjct: 434 EKDTELWKQQVDSYWNLMSSKVKS---------------NTVRNIMDMKAHMGSFAAAL- 477
Query: 565 EKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624
K K VWVMNVV G N L +I DRG +G H+WCEAF TYPRTYDL+HA + S
Sbjct: 478 -KDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNHNWCEAFSTYPRTYDLLHAWSIFS--DI 534
Query: 625 HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDE 682
CS D+ E+DRILRP G+VIIRD ++ES + L W+ E + S E
Sbjct: 535 KSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVESIKKYLQALHWETVASEKVNTSSE 592
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 204/556 (36%), Positives = 301/556 (54%), Gaps = 56/556 (10%)
Query: 153 KDLEFCSEDFENYVPCFN--ESRNLALGYSNGDEVDRHCGQE-LKQHCLVLPPVKYRIPL 209
+ E CSE+ Y+PC + E+ + G+ +R+C + + +C V P YR P+
Sbjct: 147 RKFEICSENMTEYIPCLDNVEAIKRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRSPI 206
Query: 210 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIA 268
WP RD +W +NV T L + + E ++ F F G + Y QI+
Sbjct: 207 PWPRSRDEVWFNNVPHTK---LVEDKGGQNWIYKENDKFKFPGGGTQFIHGADQYLDQIS 263
Query: 269 EMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 328
+MI + N R +LDIGCG SFGA+L S+ +LTM IA + +Q+Q LERG
Sbjct: 264 QMIPDISFGNH----TRVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERG 319
Query: 329 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388
+PAM+ +F +++L YPS +FD++HC+RC ++W + DGILLLEV+R+L+ GGYFVW +
Sbjct: 320 VPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA--- 376
Query: 389 NPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 448
+ K +++W + + LCW LV ++ +W+K +CY SR G P +C
Sbjct: 377 -QPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLC 435
Query: 449 SKGNDVESPYYRPLQPCIGGTRNRRWIPIEER------RNWPSRA-----NLNKNELAVY 497
+ +D ++ +Y L+ CI TR IEE WP+R L ++ Y
Sbjct: 436 NSEDDPDNVWYVDLKACI--TR------IEENGYGANLAPWPARLLTPPDRLQTIQIDSY 487
Query: 498 GVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG 557
E F +++ WK + N+ + L H K+ G +RNVLDM A FG
Sbjct: 488 IARKELFVAESKYWKEIISNYVNAL-------HWKQIG----------LRNVLDMRAGFG 530
Query: 558 GFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEG 617
GF +AL E WV+NV+P G N LP+I DRG +GV+HDWCE F TYPRTYDL+HA G
Sbjct: 531 GFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHAAG 590
Query: 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 677
L S+E R RC+ + E+DRILRP G V IRDT + + + ++W + E
Sbjct: 591 LFSIE---RKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETA 647
Query: 678 S--NSDERLLICQKPF 691
+S R+L+C+K F
Sbjct: 648 EGPHSSYRVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/559 (33%), Positives = 300/559 (53%), Gaps = 54/559 (9%)
Query: 151 RSKDLEFCSEDFENYVPCFNESRNLALGYSN--GDEVDRHCGQELKQ-HCLVLPPVKYRI 207
R K C E Y+PC + + + S G+ +RHC ++ K +CLV PP YR
Sbjct: 173 RIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPPKGYRQ 232
Query: 208 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQ 266
P+ WP RD +W SNV T L + + ++ + F F G + Y Q
Sbjct: 233 PIPWPKSRDEVWFSNVPHTR---LVEDKGGQNWISRDKNKFKFPGGGTQFIHGADQYLDQ 289
Query: 267 IAEMIGLRNESNFILAG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 325
+++M+ S+ +R +D+GCG SFGA+L S++++TM +A + +Q+Q L
Sbjct: 290 MSKMV-----SDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFAL 344
Query: 326 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385
ERG+PAM +FA+++L YPS +FD++HC+RC ++W + DGILLLE++R+L+ GGYF W +
Sbjct: 345 ERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAA 404
Query: 386 -PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSG 444
P+ + L +++W + + +LCW+LV ++ +W+K CY SR+ G+
Sbjct: 405 QPVYKHEPAL-----EEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTK 459
Query: 445 PSICSKGNDVESPYYRPLQPCIGGTRNRRW---IPIEERRNWPSRANLNKNELAV----- 496
P +C + +D ++ +Y L+PCI + + +P+ WP+R + + L
Sbjct: 460 PPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPL-----WPARLHTPPDRLQTIKFDS 514
Query: 497 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHF 556
Y E F +++ W +G + L +RNVLDM A F
Sbjct: 515 YIARKELFKAESKYWNEIIGGYVRALKWKKMK-----------------LRNVLDMRAGF 557
Query: 557 GGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 616
GGF +AL + WV++VVP G N LP+I DRG +GV+HDWCE F TYPRTYD +HA
Sbjct: 558 GGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHAS 617
Query: 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 676
GL S+E R RC I E+DRILRP G IRD+ +++ + +T + W + +
Sbjct: 618 GLFSIE---RKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDT 674
Query: 677 ES--NSDERLLICQKPFFK 693
++ R+L C+K +
Sbjct: 675 SEGPHASYRILTCEKRLLR 693
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (878), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 198/548 (36%), Positives = 296/548 (54%), Gaps = 50/548 (9%)
Query: 155 LEFCSEDFENYVPCF-NESRNLALGYSN-GDEVDRHCGQELKQHCLVLPPVKYRIPLRWP 212
L+ C + +Y+PC NE L ++ G+ +RHC ++ CL+ PP Y+ P++WP
Sbjct: 143 LKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQ-SLDCLIPPPDGYKKPIQWP 201
Query: 213 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIAEMI 271
RD IW +NV T L + + E+++ F F G + Y QI++MI
Sbjct: 202 QSRDKIWFNNVPHTR---LVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI 258
Query: 272 GLRNESNFILAGVRT--ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 329
I G RT LDIGCG SFGA L + T+ +A + +Q+Q LERG+
Sbjct: 259 P------DITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGV 312
Query: 330 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389
PAM+ FA+++L YPS SF+M+HC+RC ++W + DGILLLEV+R+L+ GGYFVW +
Sbjct: 313 PAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA---- 368
Query: 390 PQAFLRNKEN-QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 448
Q ++++N Q++W + D +CWEL+ ++ VW+K SCY SR+ G+ P +C
Sbjct: 369 -QPVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLC 427
Query: 449 SKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-----LNKNELAVYGVHPEE 503
+D + +Y ++PCI + + WP+R + L ++ Y E
Sbjct: 428 RPDDDPDDVWYVDMKPCITRLPDNGY--GANVSTWPARLHDPPERLQSIQMDAYISRKEI 485
Query: 504 FAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSAL 563
++ W V ++ + F +RNVLDM A FGGF +AL
Sbjct: 486 MKAESRFWLEVVESYVRVFRWKEFK-----------------LRNVLDMRAGFGGFAAAL 528
Query: 564 LEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623
+ G WVMN+VP G N LP+I DRG G +HDWCE F TYPRTYDL+HA L S+E
Sbjct: 529 NDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVE- 587
Query: 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES--NSD 681
+ RC+ +I E+DR+LRP G V IRD+ L++ + + + W A V + ++
Sbjct: 588 --KKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHAS 645
Query: 682 ERLLICQK 689
R+LIC K
Sbjct: 646 VRILICDK 653
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 697 | ||||||
| 225459280 | 696 | PREDICTED: probable pectin methyltransfe | 0.995 | 0.997 | 0.773 | 0.0 | |
| 449437010 | 690 | PREDICTED: probable pectin methyltransfe | 0.987 | 0.997 | 0.751 | 0.0 | |
| 255545748 | 656 | S-adenosylmethionine-dependent methyltra | 0.941 | 1.0 | 0.766 | 0.0 | |
| 356515784 | 690 | PREDICTED: probable pectin methyltransfe | 0.989 | 1.0 | 0.740 | 0.0 | |
| 356508083 | 690 | PREDICTED: probable pectin methyltransfe | 0.989 | 1.0 | 0.738 | 0.0 | |
| 356552890 | 693 | PREDICTED: probable pectin methyltransfe | 0.989 | 0.995 | 0.761 | 0.0 | |
| 297842599 | 683 | hypothetical protein ARALYDRAFT_895718 [ | 0.977 | 0.997 | 0.734 | 0.0 | |
| 356547964 | 694 | PREDICTED: probable pectin methyltransfe | 0.992 | 0.997 | 0.751 | 0.0 | |
| 42563316 | 684 | putative pectin methyltransferase QUA2 [ | 0.978 | 0.997 | 0.731 | 0.0 | |
| 357489679 | 675 | hypothetical protein MTR_5g064080 [Medic | 0.964 | 0.995 | 0.706 | 0.0 |
| >gi|225459280|ref|XP_002285784.1| PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera] gi|302141967|emb|CBI19170.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/699 (77%), Positives = 616/699 (88%), Gaps = 5/699 (0%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MSR + RGVSG+RISGN HD D +MK + EKED EK+ S+D + L+ +FP + +N
Sbjct: 1 MSRAMHRGVSGLRISGNSHDSRDSQMKVKTEKEDSEKNRSSDHTCLSFKFPS--VPFPDN 58
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
+S SK+GISENGF SD FS+G+PRSR TML LK SL+ IV LALTGSF WTISI+TSS
Sbjct: 59 SS-SKHGISENGFASDTFSAGSPRSRHKLTMLVLKLSLVLIVVLALTGSFLWTISITTSS 117
Query: 121 RGHIYH--GYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALG 178
RG I+H GYRRL EQLVSDLWDIGE+SLG +R K++EFC ++EN+VPCFN S +LALG
Sbjct: 118 RGQIFHSHGYRRLYEQLVSDLWDIGELSLGPARLKEVEFCPLEYENHVPCFNVSESLALG 177
Query: 179 YSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTK 238
YS+G+E++R CG ++Q+CL PPV YRIPLRWPTGRD+IWV+NVKITAQEVLSSGSLTK
Sbjct: 178 YSDGEELNRRCGHGIRQNCLFPPPVNYRIPLRWPTGRDIIWVANVKITAQEVLSSGSLTK 237
Query: 239 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 298
RMMMLEEEQISFRSASL+FDGVEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFG
Sbjct: 238 RMMMLEEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFG 297
Query: 299 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358
AHLFSKE+LTMCIA+YEASGSQVQLTLERGLPAMIGSF SKQ+PYP LSFDM+HCARCG+
Sbjct: 298 AHLFSKEILTMCIASYEASGSQVQLTLERGLPAMIGSFTSKQMPYPYLSFDMVHCARCGI 357
Query: 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418
DWDQKDGILL+EVDRVL+PGGYFVWTSPLTN Q FLRNKE QKRWNFVR+F ENLCWE++
Sbjct: 358 DWDQKDGILLIEVDRVLRPGGYFVWTSPLTNAQRFLRNKEMQKRWNFVRNFAENLCWEML 417
Query: 419 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 478
SQQDET VWKKTSK SCY+SRKPGSGPSICSK +D ESPYYRPL+ CIGGT++ RWIPI+
Sbjct: 418 SQQDETAVWKKTSKKSCYASRKPGSGPSICSKRHDGESPYYRPLEACIGGTQSSRWIPIK 477
Query: 479 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 538
R WPSRA LN +EL +Y +H EEFAEDT++W A+ N+WSLLSPLIFSDHPKRPGDED
Sbjct: 478 ARTTWPSRAKLNSSELQIYDLHSEEFAEDTQHWNLAIRNYWSLLSPLIFSDHPKRPGDED 537
Query: 539 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 598
PSPP+NM+RNVLDMNAH GGFNSALLE GKSVWVMNVVPTIG N+LP+ILDRGFVGVLHD
Sbjct: 538 PSPPFNMLRNVLDMNAHLGGFNSALLEAGKSVWVMNVVPTIGHNYLPLILDRGFVGVLHD 597
Query: 599 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 658
WCEAFPTYPRTYD+VHA GLLSLE+ + RC+ LD+FTEIDR+LRPEGWVI+RDT LI+
Sbjct: 598 WCEAFPTYPRTYDMVHAAGLLSLETSQQRRCTMLDLFTEIDRLLRPEGWVILRDTVSLID 657
Query: 659 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
SAR L TRLKWDARV+EIESNS+ERLL+CQKPFFKRQ +
Sbjct: 658 SARMLITRLKWDARVVEIESNSNERLLVCQKPFFKRQTN 696
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437010|ref|XP_004136285.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] gi|449496983|ref|XP_004160281.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/697 (75%), Positives = 593/697 (85%), Gaps = 9/697 (1%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQS-YLALRFPFRFLSHDN 59
MSRPL RG SG+++ G+G D WD +MK++ +KE++++ S D LA R PFR L DN
Sbjct: 1 MSRPLHRGASGVKVHGHGDDKWDSQMKDKTDKEEVDRKGSLDHGGNLAPRLPFRLLLPDN 60
Query: 60 NTSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTS 119
SPSKYG +ENGF SD F G RSRQ F + L+FSL+ I+ LALTGSFWWT+SIS S
Sbjct: 61 --SPSKYGGTENGFASDSFLVGNSRSRQQFILQMLRFSLVLIIILALTGSFWWTLSISGS 118
Query: 120 SRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGY 179
S+ I+HGYRRLQEQLVSDLWDIGEISLG SR K+LEFC +FENYVPCFN S
Sbjct: 119 SQVQIFHGYRRLQEQLVSDLWDIGEISLGPSRLKELEFCLPEFENYVPCFNSS------L 172
Query: 180 SNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKR 239
S DE DRHC +CL+ PP+KY+IPLRWPTGRDVIWVSNVKITA EVL SGSLTKR
Sbjct: 173 SQEDEYDRHCEPNSSLNCLIQPPLKYKIPLRWPTGRDVIWVSNVKITANEVLYSGSLTKR 232
Query: 240 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 299
MMMLEEEQISFRSAS +FDGVEDYSHQIAEMIGLRNESNF GVRTILDIGCGYGSFGA
Sbjct: 233 MMMLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREIGVRTILDIGCGYGSFGA 292
Query: 300 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359
HLFSK LLTMCIANYEASGSQVQLTLERGLPAM+GSF SKQLP+PSLS+DM+HCARCGVD
Sbjct: 293 HLFSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPFPSLSYDMVHCARCGVD 352
Query: 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419
WD KDG L+EVDRVLKPGGYFVWTSPLTN Q+ L KENQK WNF++DFVE LCWE+++
Sbjct: 353 WDNKDGRYLIEVDRVLKPGGYFVWTSPLTNTQSVLNKKENQKSWNFIQDFVEYLCWEMLN 412
Query: 420 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 479
QQDETVVWKKTSK++CYSSRKP S P IC KG+D+ESPYYRPLQ CIGG ++RRW+PI E
Sbjct: 413 QQDETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQDCIGGRKSRRWVPIYE 472
Query: 480 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 539
R+ WPSRANLNK+ELA++G+ ++ A+D+ NWK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 473 RQTWPSRANLNKSELALHGLALDDVADDSLNWKMAVKNYWSLLSPLIFSDHPKRPGDEDP 532
Query: 540 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 599
PPYNM+RNVLDMNAH+GGFNSALLE GKSVWVMNVVPT G NHLPMI+DRGF+GVLHDW
Sbjct: 533 LPPYNMLRNVLDMNAHYGGFNSALLEAGKSVWVMNVVPTDGPNHLPMIMDRGFIGVLHDW 592
Query: 600 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 659
CEAFPTYPR+YDLVHA GLLSLE+ + RCS LD+F+EIDR+LRPEGWVIIRDT LIES
Sbjct: 593 CEAFPTYPRSYDLVHAAGLLSLEAIKKPRCSMLDLFSEIDRLLRPEGWVIIRDTTTLIES 652
Query: 660 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
AR +TT+LKWDARVIEIE N+DER+LICQKPF KRQA
Sbjct: 653 ARTVTTQLKWDARVIEIEDNNDERVLICQKPFLKRQA 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545748|ref|XP_002513934.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547020|gb|EEF48517.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/697 (76%), Positives = 597/697 (85%), Gaps = 41/697 (5%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MSRPL RG+SGMRISGN +D WD +MK++ EKE+LEK+ S+DQSYLALRFPFR L DN
Sbjct: 1 MSRPLHRGISGMRISGNSNDLWDSQMKDKPEKEELEKNRSSDQSYLALRFPFRVLFPDN- 59
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
SPSKYG +ENG SD FS GTPRSR FT+L LK SL+ I+ LALTGSFWWTISI+TSS
Sbjct: 60 VSPSKYGSTENGIASDPFSIGTPRSRHKFTLLLLKLSLVVILVLALTGSFWWTISITTSS 119
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RG I+H YRRLQEQLVSDLWDIGE+SLGSSR K++EFC + +ENYVPC+N S N+
Sbjct: 120 RGQIFHNYRRLQEQLVSDLWDIGELSLGSSRLKEVEFCPQQYENYVPCYNVSENI----- 174
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
+G+E DR+CG +Q CL LPP Y+IPLRWPTGRDVIWV+NVKITAQEVLSSGSLTKRM
Sbjct: 175 DGNENDRYCGLGSRQSCLALPPTNYKIPLRWPTGRDVIWVANVKITAQEVLSSGSLTKRM 234
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MML++EQISFRSAS+ FD VEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGAH
Sbjct: 235 MMLDQEQISFRSASM-FDSVEDYSHQIAEMIGLRNESNFIKAGVRTILDIGCGYGSFGAH 293
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
LF ++LLTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLP+PSLSFDMLHCARCG+DW
Sbjct: 294 LFQRQLLTMCIANYEASGSQVQLTLERGLPAMIGSFTSKQLPFPSLSFDMLHCARCGIDW 353
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
DQ KEN KRW+FVR F EN+CWE++SQ
Sbjct: 354 DQ----------------------------------KENLKRWDFVRGFAENMCWEMLSQ 379
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKT+K SCYSSRKPGSGPSICS+G+DVESPYYRPLQ CI GT++RRWIPIEER
Sbjct: 380 QDETVVWKKTAKKSCYSSRKPGSGPSICSRGHDVESPYYRPLQACIAGTQSRRWIPIEER 439
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
WPSR++L+KNELA+YG+HPEEF ED+E+W+T++ N+WSLLSPLIFSDHPKRPGDEDPS
Sbjct: 440 TIWPSRSHLSKNELAIYGLHPEEFTEDSESWRTSISNYWSLLSPLIFSDHPKRPGDEDPS 499
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNAHFGGFNSALLE GKSVWVMNVVPT G N+LPMILDRGFVGVLHDWC
Sbjct: 500 PPYNMLRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTSGPNYLPMILDRGFVGVLHDWC 559
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESA 660
EAFPTYPRTYDLVHA GLLSLE+G +HRC+ LDIFTE+DR+LRPEGW+II DTA LIESA
Sbjct: 560 EAFPTYPRTYDLVHAAGLLSLETGQQHRCTMLDIFTEVDRLLRPEGWMIIHDTAPLIESA 619
Query: 661 RALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
RALT RLKWDARVIEIESNSDERLLICQKPFFK+QAS
Sbjct: 620 RALTARLKWDARVIEIESNSDERLLICQKPFFKKQAS 656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515784|ref|XP_003526578.1| PREDICTED: probable pectin methyltransferase QUA2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/697 (74%), Positives = 590/697 (84%), Gaps = 7/697 (1%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MSRPL RGVS N +D WD + K+++EKE L++ S+ LR PFR L DN
Sbjct: 1 MSRPLHRGVSIRIPDSNNNDLWDSQSKDKSEKEGLDRRGSSGHPS-PLRSPFRLLFSDN- 58
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
S SKYGISENGF+SD F GTPRSR +LFL+FSL+ IV LAL GSFWWTISIST+S
Sbjct: 59 -SNSKYGISENGFSSDPFIIGTPRSRLKLVLLFLRFSLVFIVILALAGSFWWTISISTAS 117
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RGHIYHGYRRLQE+LVSDL DIGEIS SR K+LEFCSE+FENYVPCFN S NLALG+S
Sbjct: 118 RGHIYHGYRRLQEKLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFS 177
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
+G+E DR C EL+Q+CLVL P Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRM
Sbjct: 178 DGNEFDRQCRHELRQNCLVLSPPNYKIPLRWPTGRDIIWIANTKITAQEVLSSGSFTKRM 237
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MML+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAH
Sbjct: 238 MMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAH 297
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
LF +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DW
Sbjct: 298 LFQSQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDW 357
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
D+KDGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW ++ F ENLCW+++SQ
Sbjct: 358 DRKDGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKIIQSFAENLCWDMLSQ 413
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKT K +CYSSRK S P +C KG DVESPYYR LQ CIGGT + RWI ++ER
Sbjct: 414 QDETVVWKKTIKRNCYSSRKNSSPPPLCGKGYDVESPYYRELQNCIGGTHSSRWISVKER 473
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
+ WPSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 474 QTWPSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDPP 533
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNAH GGFNSALL+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDWC
Sbjct: 534 PPYNMLRNVLDMNAHVGGFNSALLQAGKSLWVMNVVPLSGLNYLPLIQDRGYVGVLHDWC 593
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESA 660
EAFPTYPRTYDLVHA GLLSLE + RC+ LD+F EIDR+LRPEGW+IIRD LIESA
Sbjct: 594 EAFPTYPRTYDLVHAAGLLSLEFAQQRRCTMLDMFIEIDRLLRPEGWIIIRDIVPLIESA 653
Query: 661 RALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
RALTTRLKWDARV+EIES+SD+RLLICQKP FKRQA+
Sbjct: 654 RALTTRLKWDARVVEIESDSDQRLLICQKPLFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508083|ref|XP_003522790.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/697 (73%), Positives = 587/697 (84%), Gaps = 7/697 (1%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MSRPL RGVS N +D WD + K++ EKE L++ S LR PF+ L DN
Sbjct: 1 MSRPLHRGVSIRIPDSNNNDLWDSQSKDKTEKEGLDRRGSFGHPS-PLRSPFKLLFSDN- 58
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
S SKYGI ENGF+SD F GTPRSR +LFLKFSL+ IV LAL GSFWWTISIST+S
Sbjct: 59 -SNSKYGIGENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTAS 117
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RGHIYHGYRRLQE LVSDL DIGEIS SR K+LEFCSE+FENYVPCFN S NLALG+S
Sbjct: 118 RGHIYHGYRRLQENLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFS 177
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
+G+E DR C EL+ +CLVL P Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRM
Sbjct: 178 DGNEFDRQCHHELRPNCLVLSPPNYKIPLRWPTGRDIIWIANAKITAQEVLSSGSFTKRM 237
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MML+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAH
Sbjct: 238 MMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAH 297
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
LF +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DW
Sbjct: 298 LFQSQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDW 357
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
D+KDGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW F++ F ENLCW+++SQ
Sbjct: 358 DRKDGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKFIQSFAENLCWDMLSQ 413
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKTSK +CYSSRK S P +C +G DVESPYYR LQ CIGGT + RWI ++ER
Sbjct: 414 QDETVVWKKTSKRNCYSSRKNSSPPPLCGRGYDVESPYYRELQNCIGGTHSSRWISVQER 473
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
WPSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 474 ETWPSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDPP 533
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNAH GGFNSA+L+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDWC
Sbjct: 534 PPYNMLRNVLDMNAHVGGFNSAMLQAGKSIWVMNVVPLSGLNYLPLIQDRGYVGVLHDWC 593
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESA 660
EAFPTYPRTYDLVHA GLLSLE + C+ LD+F EIDR+LRPEGW+IIRDT LIESA
Sbjct: 594 EAFPTYPRTYDLVHAAGLLSLEFAQQRSCTMLDMFIEIDRLLRPEGWIIIRDTVPLIESA 653
Query: 661 RALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
RALTTRLKWDARV+EIES+SD+RLLICQKPFFKRQA+
Sbjct: 654 RALTTRLKWDARVVEIESDSDQRLLICQKPFFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552890|ref|XP_003544795.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/700 (76%), Positives = 596/700 (85%), Gaps = 10/700 (1%)
Query: 1 MSRPLLRGV-SGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDN 59
MSRPL RGV G+R+ G+D WD + K++ EKEDL+K S D S ALRFP R L
Sbjct: 1 MSRPLQRGVLGGVRVPERGYDLWDSQSKDKIEKEDLDKRGSADHSPFALRFPLRVLL--G 58
Query: 60 NTSPSKYG--ISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISIS 117
N S SKYG +ENGF SD F GTPRS +L LKFSL+ IV LALTGSFWWT+SIS
Sbjct: 59 NNSESKYGNVKAENGFASDPFMVGTPRSLLKLMLLSLKFSLVFIVVLALTGSFWWTLSIS 118
Query: 118 TSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLAL 177
+SSRGHIYHGYRRLQE+LVSDL DIGE S G R K+ EFCSE+FEN+VPC+N S N+ L
Sbjct: 119 SSSRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKESEFCSEEFENFVPCYNVSENVEL 178
Query: 178 GYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLT 237
G S+G+EVDR CG+EL+Q+CLVLPPV Y+IPLRWPTG+DVIWV+NVKI+AQEVLSSGSLT
Sbjct: 179 GVSDGNEVDRQCGRELRQNCLVLPPVNYKIPLRWPTGKDVIWVANVKISAQEVLSSGSLT 238
Query: 238 KRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSF 297
KRMMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES I AGVRTILDIGCGYGSF
Sbjct: 239 KRMMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYLIQAGVRTILDIGCGYGSF 298
Query: 298 GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCG 357
GAHLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG
Sbjct: 299 GAHLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCG 358
Query: 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWEL 417
+DWDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL
Sbjct: 359 IDWDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFIQDFTLTLCWEL 414
Query: 418 VSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPI 477
+SQQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR L CIGGT++ RW+PI
Sbjct: 415 LSQQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELLNCIGGTQSSRWVPI 474
Query: 478 EERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDE 537
E+R WPSRANLN NELA+Y + P+E ED+++WK AV N+WSL+SPLIFSDHPKRPGDE
Sbjct: 475 EKRERWPSRANLNNNELAIYVLQPDELTEDSDSWKIAVQNYWSLMSPLIFSDHPKRPGDE 534
Query: 538 DPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH 597
DPSPPYNM RNVLDMNAHFGGFNSALL+ KSVWVMNVVP G N+LP+I DRGFVGVLH
Sbjct: 535 DPSPPYNMFRNVLDMNAHFGGFNSALLQARKSVWVMNVVPISGLNYLPLIQDRGFVGVLH 594
Query: 598 DWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLI 657
DWCEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LI
Sbjct: 595 DWCEAFPTYPRTYDLVHAAGLLSLET-EKHRCSILDLFIEIDRILRPEGWVIIRDTVPLI 653
Query: 658 ESARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
ESAR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 654 ESARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 693
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842599|ref|XP_002889181.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] gi|297335022|gb|EFH65440.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/697 (73%), Positives = 587/697 (84%), Gaps = 16/697 (2%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MS PL RG+SG+R+S + D D +MK++ E+ +H L LRFPF FL N
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLSDSQMKDKTERPRSSDNH------LTLRFPFGFL-FTNQ 53
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
+S G ENGF++D +S+ RSR ++FLK SL+ IV +AL GSFWWTISISTSS
Sbjct: 54 SSSKHGGGGENGFSADPYSA---RSRHRLMLMFLKISLVLIVVIALAGSFWWTISISTSS 110
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RGH+YH YRRLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYS
Sbjct: 111 RGHVYHNYRRLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYS 170
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
NGDE DR CG KQ CLVLPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRM
Sbjct: 171 NGDENDRFCGPGSKQECLVLPPVKYRVPLRWPTGKDIIWYSNVKITAQEVVSSGSITKRM 230
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAH
Sbjct: 231 MMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAH 289
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
L SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DW
Sbjct: 290 LLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDW 349
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
DQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++Q
Sbjct: 350 DQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQ 405
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R
Sbjct: 406 QDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGR 465
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPS
Sbjct: 466 TRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPS 525
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLHDWC
Sbjct: 526 PPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHDWC 585
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIRDTARLIES 659
E FPTYPRTYDLVHA+ LLSL++ R + C +DIFTEIDR+LRPEGWVIIRDT +L+ES
Sbjct: 586 EPFPTYPRTYDLVHADNLLSLQTSQRRKSCRLIDIFTEIDRLLRPEGWVIIRDTVQLVES 645
Query: 660 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
ARAL T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 646 ARALVTQLKWEARVIEVESSSEQRLLICQKPFTKRQS 682
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547964|ref|XP_003542374.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/699 (75%), Positives = 594/699 (84%), Gaps = 7/699 (1%)
Query: 1 MSRPLLRGVSG-MRISGNGHDP-WDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHD 58
MSRPL RGVSG +R+ +GHD WD + K++ EKEDL+ S+D S LRFP R L +
Sbjct: 1 MSRPLQRGVSGGVRVPESGHDDLWDSQSKDKTEKEDLDTRGSSDHSPFTLRFPLRVLLGN 60
Query: 59 NNTSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISIST 118
N+ S GI+ENGF SD F GTPRSR +L LKFSL+ IV LALTGSFWWT+SIS+
Sbjct: 61 NSDSKYGNGIAENGFASDPFMVGTPRSRLKLMLLSLKFSLVFIVVLALTGSFWWTLSISS 120
Query: 119 SSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALG 178
SSRG IYHGYRRLQE+LVSD+ DI E S G R K+ EFCSE+FEN+VPC+N S ++ LG
Sbjct: 121 SSRGQIYHGYRRLQEKLVSDILDISEFSHGPLRLKESEFCSEEFENFVPCYNISEDVELG 180
Query: 179 YSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTK 238
S+ +EVDR C EL+Q+CLVLPPV Y+IPLRWPTG+DVIWV+NVKI+AQEVLSSGSLTK
Sbjct: 181 VSDNNEVDRQCSHELRQNCLVLPPVNYKIPLRWPTGKDVIWVANVKISAQEVLSSGSLTK 240
Query: 239 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 298
RMMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES FI AGVRTILDIGCGYGSFG
Sbjct: 241 RMMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYFIQAGVRTILDIGCGYGSFG 300
Query: 299 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358
AHLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+
Sbjct: 301 AHLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGI 360
Query: 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418
DWDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL+
Sbjct: 361 DWDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFMQDFTLTLCWELL 416
Query: 419 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 478
SQQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR LQ CIGG ++ RW+PIE
Sbjct: 417 SQQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELQNCIGGIQSSRWVPIE 476
Query: 479 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 538
+R WPSRANLN N LA+YG+ P+E ED+++WKTA+ N+WSL+SPLIFSDHPKRPGDED
Sbjct: 477 KRERWPSRANLNNNNLAIYGLQPDELTEDSDSWKTALQNYWSLMSPLIFSDHPKRPGDED 536
Query: 539 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 598
PSPPYNM RNVLDMNAHFGGFNSALL+ KS WVMNVVP G N+LP+I DRG+VGVLHD
Sbjct: 537 PSPPYNMFRNVLDMNAHFGGFNSALLQARKSAWVMNVVPISGPNYLPLIQDRGYVGVLHD 596
Query: 599 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 658
WCEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LIE
Sbjct: 597 WCEAFPTYPRTYDLVHAAGLLSLET-EQHRCSMLDLFIEIDRILRPEGWVIIRDTVPLIE 655
Query: 659 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 697
SAR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 656 SARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 694
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563316|ref|NP_177948.3| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|238479105|ref|NP_001154475.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|292630946|sp|Q9C9Q8.2|PMTT_ARATH RecName: Full=Probable pectin methyltransferase QUA2; AltName: Full=Protein OVERSENSITIVE TO SUGAR 1; AltName: Full=Protein QUASIMODO 2; AltName: Full=Protein TUMOROUS SHOOT DEVELOPMENT 2 gi|332197964|gb|AEE36085.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|332197965|gb|AEE36086.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/697 (73%), Positives = 585/697 (83%), Gaps = 15/697 (2%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MS PL RG+SG+R+S + D D +MK++ E+ ST+ + L LRFPF FL N
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERA-----RSTENNNLTLRFPFGFL-FSNQ 54
Query: 61 TSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSS 120
+S G ENGF++D +S+ RSR +LFLK SL+ IV +AL GSFWWTISISTSS
Sbjct: 55 SSSKHGGGGENGFSADPYSA---RSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSS 111
Query: 121 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYS 180
RGH+YH YRRLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYS
Sbjct: 112 RGHVYHNYRRLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYS 171
Query: 181 NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240
NGDE DR CG KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRM
Sbjct: 172 NGDENDRFCGPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRM 231
Query: 241 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAH 300
MM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAH
Sbjct: 232 MMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAH 290
Query: 301 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360
L SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DW
Sbjct: 291 LLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDW 350
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420
DQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++Q
Sbjct: 351 DQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLNQ 406
Query: 421 QDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
QDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE R
Sbjct: 407 QDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEGR 466
Query: 481 RNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPS 540
WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDPS
Sbjct: 467 TRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDPS 526
Query: 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWC 600
PPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+WC
Sbjct: 527 PPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNWC 586
Query: 601 EAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 659
E FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 587 EPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVEK 646
Query: 660 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 647 ARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357489679|ref|XP_003615127.1| hypothetical protein MTR_5g064080 [Medicago truncatula] gi|355516462|gb|AES98085.1| hypothetical protein MTR_5g064080 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/698 (70%), Positives = 570/698 (81%), Gaps = 26/698 (3%)
Query: 1 MSRPLLRGVSG-MRISGN-GHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHD 58
MSRPL RGVSG R+ N D WD + K+++EK+D ++ S+D + LALR P + S
Sbjct: 1 MSRPLHRGVSGGARVLENINDDTWDSQSKDKSEKDDFDRRGSSDHTPLALRSPLKLFSD- 59
Query: 59 NNTSPSKYGISENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISIST 118
ENGF SD S G+PRSR M +KFSL+ IV AL GSF WT+++S+
Sbjct: 60 ----------KENGFASDPISVGSPRSRFKLMMFLVKFSLVFIVVFALVGSFLWTLNLSS 109
Query: 119 SSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALG 178
SSRG +YHGYRRLQE+LVSDL DIGEIS G+SR K+LE CS + EN+VPCFN
Sbjct: 110 SSRGRVYHGYRRLQEKLVSDLLDIGEISRGASRWKELESCSPELENFVPCFN-------- 161
Query: 179 YSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTK 238
S+G+E +R C E Q+CLVLPPV Y++PLRWPTG+DVIWV+NVKITAQEVLSSGSLTK
Sbjct: 162 VSDGNEFERKCEYEQSQNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTK 221
Query: 239 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 298
RMMML+EEQISFRSAS +FDGVEDYSHQIAEMIGLRNES+FI AG+RT+LDIGCGYGSFG
Sbjct: 222 RMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFIQAGIRTVLDIGCGYGSFG 281
Query: 299 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358
AHLF ++LT+CIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+
Sbjct: 282 AHLFDSQILTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGI 341
Query: 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418
DWDQKDG LL+E DR+L+PGGYFVWTSPLTN RNKENQKRW V DF ENLCWE++
Sbjct: 342 DWDQKDGNLLIEADRLLRPGGYFVWTSPLTNA----RNKENQKRWKIVHDFTENLCWEML 397
Query: 419 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 478
SQQDETVV+KK SK +CY+SRK GS P +C +G DVESPYYR LQ CIGGT+ RRW+ IE
Sbjct: 398 SQQDETVVFKKASKKNCYTSRKKGSRP-LCGRGLDVESPYYRELQNCIGGTQTRRWLSIE 456
Query: 479 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 538
+R WPSRANLNKNELA++G+ P+E ED+++WK AV N+WSLLSP+IFSDHPKRPGDED
Sbjct: 457 KREKWPSRANLNKNELAIHGLLPDELGEDSDSWKAAVQNYWSLLSPVIFSDHPKRPGDED 516
Query: 539 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 598
PSPPYNM RNVLDMNA+FGGFNSALL+ KSVWVMNVVP G N+LP+I DRGFVGVLHD
Sbjct: 517 PSPPYNMFRNVLDMNANFGGFNSALLQARKSVWVMNVVPRSGPNYLPLIQDRGFVGVLHD 576
Query: 599 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 658
WCEAFPTYPRTYDLVHA G+LSLE RC+ LD+F EIDR+LRPEGW+IIRDT LIE
Sbjct: 577 WCEAFPTYPRTYDLVHAAGILSLEFSQPLRCTMLDLFIEIDRLLRPEGWIIIRDTIPLIE 636
Query: 659 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
SAR L +LKW+ARVIEIESNS+E+LLICQKPFFK+ A
Sbjct: 637 SARVLAAQLKWEARVIEIESNSEEKLLICQKPFFKKHA 674
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 697 | ||||||
| TAIR|locus:2032130 | 684 | TSD2 "TUMOROUS SHOOT DEVELOPME | 0.977 | 0.995 | 0.719 | 2.2e-279 | |
| TAIR|locus:2063798 | 606 | QUL2 "QUASIMODO2 LIKE 2" [Arab | 0.571 | 0.656 | 0.537 | 9.3e-189 | |
| TAIR|locus:2014789 | 603 | QUL1 "QUASIMODO2 LIKE 1" [Arab | 0.832 | 0.961 | 0.547 | 2.7e-180 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.535 | 0.609 | 0.361 | 1.1e-103 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.532 | 0.595 | 0.348 | 2.5e-100 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.520 | 0.594 | 0.354 | 8.6e-100 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.519 | 0.595 | 0.356 | 8.6e-100 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.497 | 0.529 | 0.341 | 7.8e-94 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.503 | 0.593 | 0.356 | 9e-90 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.503 | 0.585 | 0.349 | 2.4e-89 |
| TAIR|locus:2032130 TSD2 "TUMOROUS SHOOT DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2685 (950.2 bits), Expect = 2.2e-279, P = 2.2e-279
Identities = 502/698 (71%), Positives = 578/698 (82%)
Query: 1 MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALRFPFRFLSHDNN 60
MS PL RG+SG+R+S + D D +MK++ E+ ST+ + L LRFPF FL +N
Sbjct: 1 MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERA-----RSTENNNLTLRFPFGFLF--SN 53
Query: 61 TSPSKYGIS-ENGFTSDIFSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFXXXXXXXXX 119
S SK+G ENGF++D +S+ RSR +LFLK SL+ IV +AL GSF
Sbjct: 54 QSSSKHGGGGENGFSADPYSA---RSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTS 110
Query: 120 XRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGY 179
RGH+YH YRRLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGY
Sbjct: 111 SRGHVYHNYRRLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGY 170
Query: 180 SNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKR 239
SNGDE DR CG KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKR
Sbjct: 171 SNGDENDRFCGPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKR 230
Query: 240 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 299
MMM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGA
Sbjct: 231 MMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGA 289
Query: 300 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359
HL SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+D
Sbjct: 290 HLLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGID 349
Query: 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419
WDQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++
Sbjct: 350 WDQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLN 405
Query: 420 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 479
QQDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE
Sbjct: 406 QQDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEG 465
Query: 480 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 539
R WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDP
Sbjct: 466 RTRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDP 525
Query: 540 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 599
SPPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+W
Sbjct: 526 SPPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNW 585
Query: 600 CEAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 658
CE FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 586 CEPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVE 645
Query: 659 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 646 KARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
|
| TAIR|locus:2063798 QUL2 "QUASIMODO2 LIKE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 9.3e-189, Sum P(2) = 9.3e-189
Identities = 220/409 (53%), Positives = 280/409 (68%)
Query: 75 SDIFSSGTPRSRQNFTMLFLKFSLIAIV-FLALTGSFXXXXXXXXXXRGHIYHGYRRLQE 133
S +F PR R +LF ++A+V LA S +IY YRR++E
Sbjct: 10 SSVFGL-RPRIRG---LLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKE 65
Query: 134 QLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL 193
Q D D+ +SLG+S K+ FC ++ E+YVPC+N + NL G G+E+DRHC E
Sbjct: 66 QAAVDYLDLRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFER 124
Query: 194 -KQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRS 252
K+ C+V PP Y+IPLRWP GRD+IW NVKIT + LSSG++T R+M+LEE QI+F S
Sbjct: 125 EKERCVVRPPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHS 184
Query: 253 AS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCI 311
L+FDGV+DY+ QIAEMIGL +++ F AGVRT+LDIGCG+GSFGAHL S +L+ +CI
Sbjct: 185 EDGLVFDGVKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICI 244
Query: 312 ANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEV 371
A YEA+GSQVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG WD KD +LLLEV
Sbjct: 245 AEYEATGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIKDAMLLLEV 304
Query: 372 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS 431
DRVLKPGGYFV TSP Q L + + V + + +CW L +QQDET +W+KTS
Sbjct: 305 DRVLKPGGYFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLTAQQDETFLWQKTS 364
Query: 432 KASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER 480
+SCYSSR S P +C G+ V PYY PL PCI GT ++RWI I+ R
Sbjct: 365 DSSCYSSRSQASIP-LCKDGDSV--PYYHPLVPCISGTTSKRWISIQNR 410
|
|
| TAIR|locus:2014789 QUL1 "QUASIMODO2 LIKE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
Identities = 335/612 (54%), Positives = 433/612 (70%)
Query: 91 MLFLKFSLIAIVFLALTGSFXXXXXXXXXXR-GHIYHGYRRLQEQLVSDLWDIGEISLGS 149
+LFL +IA++ + + S +IY Y R++EQ D D+ SLG
Sbjct: 16 LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75
Query: 150 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC--GQELKQHCLVLPPVKYRI 207
+R K+ C ++ +NYVPC+N + E DR+C +E ++ CLV PP Y+I
Sbjct: 76 NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFARE-EERCLVRPPRDYKI 123
Query: 208 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQ 266
PLRWP GRD+IW NVKIT + LSSG++TKR+M+LEE QI+F S LIFDGV+DY+ Q
Sbjct: 124 PLRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQ 183
Query: 267 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326
IAEMIGL +++ F AG+RT+LDIGCG+GSFGAHL S ++ +CIA YE SGSQVQL LE
Sbjct: 184 IAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALE 243
Query: 327 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386
RGLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD KD +LLLEVDRVLKPGGYFV TSP
Sbjct: 244 RGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAMLLLEVDRVLKPGGYFVLTSP 303
Query: 387 LTNPQAFLRNKENQKRWNF---VRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGS 443
+ Q N + K+ + V + + +CW L QQDET +W+KT+ +CYSSR S
Sbjct: 304 TSKAQG---NSPDTKKTSISTRVDELSKKICWSLSGQQDETFLWQKTADPNCYSSRSQAS 360
Query: 444 GPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN-LNKNELAVYGVHPE 502
P +C + V PYY PL PCI GT+++RWIPI+ R SRA+ + +EL ++G+ PE
Sbjct: 361 IP-VCKDDDSV--PYYHPLVPCISGTKSKRWIPIQNR----SRASGTSLSELEIHGIKPE 413
Query: 503 EFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSA 562
EF ED + W++A+ N+WSLL+PLIFSDHPKRPGDEDP PP+ M+RN +DMNA +G N A
Sbjct: 414 EFDEDIQVWRSALKNYWSLLTPLIFSDHPKRPGDEDPVPPFYMIRNAMDMNARYGNLNQA 473
Query: 563 LLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622
LL +GKSVWVMNVVP N LP+ILDRGF G LHDWCE FPTYPRTYD++HA LL+
Sbjct: 474 LLNQGKSVWVMNVVPVKARNTLPIILDRGFTGALHDWCEPFPTYPRTYDMLHANELLTHL 533
Query: 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDE 682
S R CS +D+F E+DRILRPEGWV++ D +IE AR L R++W+ARVI+I+ SD+
Sbjct: 534 SSER--CSLMDLFLEMDRILRPEGWVVLSDKLGVIEMARTLAARVRWEARVIDIQDGSDQ 591
Query: 683 RLLICQKPFFKR 694
RLL+CQKP K+
Sbjct: 592 RLLVCQKPLLKK 603
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 143/396 (36%), Positives = 224/396 (56%)
Query: 144 EISLGSSR---SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQ 195
+I L SR K + C +PC + + + L L S + + HC E +
Sbjct: 66 DIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125
Query: 196 HCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASL 255
+CLV PPV Y+IPLRWP RD +W +N+ T L+ + M++ ++I+F
Sbjct: 126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGT 182
Query: 256 IF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANY 314
F +G + Y +A+M+ + +R +LD+GCG SFGA+L S +++ M +A
Sbjct: 183 HFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPN 242
Query: 315 EASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRV 374
+ +Q+Q LERG+P+ +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DR+
Sbjct: 243 DVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRL 302
Query: 375 LKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKAS 434
L+PGGYFV++SP +A+ + EN+K N + D + +CW++V+++D++V+W K S
Sbjct: 303 LRPGGYFVYSSP----EAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNS 358
Query: 435 CYSSRKPGSGPSICSKGNDVESPYYRPLQPCIG--GTR--NRRWIPIEERRNWPSRANLN 490
CY R PG P +C G+D ++ + ++ CI R RW + WP R
Sbjct: 359 CYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVP---WPRRLTAP 415
Query: 491 KNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLI 526
L GV PE+F EDTE W+ V +W LL P++
Sbjct: 416 PPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMV 451
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
Identities = 134/385 (34%), Positives = 218/385 (56%)
Query: 152 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 206
+K C + +PC + + L L S + +RHC E + +CL+ PP Y+
Sbjct: 81 AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140
Query: 207 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 265
+P++WP RD +W +N+ T L+ + M+ + E+ISF F G + Y
Sbjct: 141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197
Query: 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 325
IA M+ N+ +RT+LD+GCG SFGA+L + +++TM +A + +Q+Q L
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257
Query: 326 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385
ERG+PA +G +K+LPYPS SF+ HC+RC +DW Q+DG+LLLE+DRVL+PGGYF ++S
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSS 317
Query: 386 PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGP 445
P +A+ +++EN K W + VE +CW + ++++TVVW+K CY R+PG+ P
Sbjct: 318 P----EAYAQDEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQP 373
Query: 446 SICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEF 504
+C D ++ ++ CI +++ WP+R + LA +G + F
Sbjct: 374 PLCRSDADPDAVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMF 433
Query: 505 AEDTENWKTAVGNFWSLLSPLIFSD 529
+DTE WK V ++W+L+S + S+
Sbjct: 434 EKDTELWKQQVDSYWNLMSSKVKSN 458
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 135/381 (35%), Positives = 216/381 (56%)
Query: 158 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 212
C + +PC + + L L S + +RHC E + +CL+ PP Y+IP++WP
Sbjct: 82 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKWP 141
Query: 213 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 271
RD +W N+ T L+ + M+++ E+I+F F G + Y +A M+
Sbjct: 142 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANML 198
Query: 272 GLRNESNFILAG--VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 329
N N + G +RT LD+GCG SFG +L + E++TM +A + +Q+Q LERG+
Sbjct: 199 NFPN--NVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGI 256
Query: 330 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389
PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++SP
Sbjct: 257 PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSP--- 313
Query: 390 PQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICS 449
+A+ +++E+ + W + V +CW + +++++TV+W+K CY R+PG+ P +C+
Sbjct: 314 -EAYAQDEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCN 372
Query: 450 KGNDVESPYYRPLQPCIGGTRNR-RWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDT 508
+D ++ Y ++ CI + WP+R LA +G + F +DT
Sbjct: 373 SDSDPDAVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDT 432
Query: 509 ENWKTAVGNFWSLLSPLIFSD 529
E W+ V +W LLSP I SD
Sbjct: 433 ETWRQRVDTYWDLLSPKIQSD 453
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
Identities = 136/382 (35%), Positives = 217/382 (56%)
Query: 158 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 212
C + +PC + + L L S + +RHC E + +CL+ PP Y++P++WP
Sbjct: 79 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKWP 138
Query: 213 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 271
RD +W N+ T L+ + M+++ ++I+F F G + Y IA M
Sbjct: 139 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY---IASMA 192
Query: 272 GLRNESNFIL--AG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 328
+ N N +L G +RT+ D+GCG SFG +L S ++LTM +A + +Q+Q LERG
Sbjct: 193 NMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERG 252
Query: 329 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388
+PA +G +K+LPYPS SF++ HC+RC +DW Q+DGILLLE+DRVL+PGGYF ++SP
Sbjct: 253 IPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSP-- 310
Query: 389 NPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSIC 448
+A+ +++E+ + W + VE +CW++ +++++TV+W+K CY R+PG+ P +C
Sbjct: 311 --EAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLC 368
Query: 449 SKGNDVESPYYRPLQPCIGGTRNR-RWIPIEERRNWPSRANLNKNELAVYGVHPEEFAED 507
ND ++ + ++ CI + WP+R LA +G F +D
Sbjct: 369 RSDNDPDAVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKD 428
Query: 508 TENWKTAVGNFWSLLSPLIFSD 529
TE W+ V +W LLSP I SD
Sbjct: 429 TELWRQRVDTYWDLLSPRIESD 450
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 7.8e-94, Sum P(3) = 7.8e-94
Identities = 126/369 (34%), Positives = 201/369 (54%)
Query: 155 LEFCSEDFENYVPCF-NESRNLALGYSN-GDEVDRHCGQELKQHCLVLPPVKYRIPLRWP 212
L+ C + +Y+PC NE L ++ G+ +RHC ++ CL+ PP Y+ P++WP
Sbjct: 143 LKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENYERHCPKQ-SLDCLIPPPDGYKKPIQWP 201
Query: 213 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVEDYSHQIAEMI 271
RD IW +NV T + V G + + E+++ F F G + Y QI++MI
Sbjct: 202 QSRDKIWFNNVPHT-RLVEDKGG--QNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI 258
Query: 272 GLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA 331
+ F + R LDIGCG SFGA L + T+ +A + +Q+Q LERG+PA
Sbjct: 259 P---DITFG-SRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPA 314
Query: 332 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 391
M+ FA+++L YPS SF+M+HC+RC ++W + DGILLLEV+R+L+ GGYFVW + Q
Sbjct: 315 MVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAA-----Q 369
Query: 392 AFLRNKEN-QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSK 450
++++N Q++W + D +CWEL+ ++ VW+K SCY SR+ G+ P +C
Sbjct: 370 PVYKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRP 429
Query: 451 GNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTEN 510
+D + +Y ++PCI + + WP+R L+ + + + + E
Sbjct: 430 DDDPDDVWYVDMKPCITRLPDNGYGA--NVSTWPAR--LHDPPERLQSIQMDAYISRKEI 485
Query: 511 WKTAVGNFW 519
K A FW
Sbjct: 486 MK-AESRFW 493
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
Identities = 136/381 (35%), Positives = 208/381 (54%)
Query: 155 LEFCSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPL 209
+ C +F Y+PC N + L +L S ++++RHC E + CLV PP Y+IP+
Sbjct: 72 MNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPNDYKIPI 131
Query: 210 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQI 267
RWPT RD +W SNV T + G + + E+ Q F F G +Y ++
Sbjct: 132 RWPTSRDYVWRSNVNHTHLAQVKGG----QNWVHEQGQFWWFPGGGTHFKHGAAEYIQRL 187
Query: 268 AEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326
M + NE+ + AGV +LD+GCG SF A+L + T+ A + +Q+Q LE
Sbjct: 188 GNM--MTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245
Query: 327 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386
RG+ AMI + A+KQLPYP+ SF+M+HC+RC VDW DGILL EV R+L+P G+FV++SP
Sbjct: 246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSP 305
Query: 387 LTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPS 446
P A+ ++KE W+ + + +CW+L+S++ +T +W K K C + S
Sbjct: 306 ---P-AYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLIS 361
Query: 447 ICSKGNDVESPYYR-PLQPC--IGGTRNRRWIPIEERRN-WPSRANLNKNELAVYGVHPE 502
+C DV P ++ PL+ C I G R + ER + +P A L K G+ +
Sbjct: 362 LCDV-EDVLKPSWKVPLKDCVQISGQTEERPSSLAERLSAYP--ATLRK-----IGISED 413
Query: 503 EFAEDTENWKTAVGNFWSLLS 523
E+ DT W+ V ++W L++
Sbjct: 414 EYTSDTVFWREQVNHYWRLMN 434
|
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| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 131/375 (34%), Positives = 205/375 (54%)
Query: 158 CSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 212
C F Y+PC N + + L +L S +E++RHC E + CLV PP Y+IP+RWP
Sbjct: 86 CPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPIRWP 145
Query: 213 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQIAEM 270
T RD +W SNV T + G + + E+ Q+ F F G +Y ++ M
Sbjct: 146 TSRDYVWRSNVNHTHLAEVKGG----QNWVHEQGQLWWFPGGGTHFKHGAPEYIQRLGNM 201
Query: 271 IGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 329
NE+ +L AGV +LD+GCG SF A+L + TM A + +Q+Q LERG+
Sbjct: 202 T--TNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALERGI 259
Query: 330 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389
AMI + A+KQ+PYP+ SFDM+HC+RC VDW + DG+L+ EV+R+L+P GYFV+++P
Sbjct: 260 RAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFVYSAP--- 316
Query: 390 PQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICS 449
P A+ ++K+ W+ + + +CW+L+S++ +T +W K +C +IC
Sbjct: 317 P-AYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELITICG 375
Query: 450 KGNDVESPYYR-PLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDT 508
DV ++ PL+ C+ + NR+ P + R + L G+ +EF DT
Sbjct: 376 V-EDVSKASWKVPLRDCVDISENRQQKP----SSLTDRLSSYPTSLREKGISEDEFTLDT 430
Query: 509 ENWKTAVGNFWSLLS 523
W+ V +W L++
Sbjct: 431 NFWREQVNQYWELMN 445
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C9Q8 | PMTT_ARATH | 2, ., 1, ., 1, ., - | 0.7317 | 0.9784 | 0.9970 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00015222001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (691 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 697 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-175 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 7e-05 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 7e-05 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 509 bits (1314), Expect = e-175
Identities = 211/546 (38%), Positives = 295/546 (54%), Gaps = 60/546 (10%)
Query: 164 NYVPCF--NESRNLALGYSNGDEVDRHC-GQELKQHCLVLPPVKYRIPLRWPTGRDVIWV 220
+Y+PC + + L + +RHC E K CLV PP Y+ P+ WP RD +W
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 221 SNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNF 279
+NV T G + + +E ++ F F G + Y +A+MI
Sbjct: 61 ANVPHTKLAEEKGG---QNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWG-- 115
Query: 280 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIA---NYEASGSQVQLTLERGLPAMIGSF 336
VRT LD+GCG SFGA+L S+++LTM A +EA QVQ LERG+PAM+G
Sbjct: 116 --GRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEA---QVQFALERGVPAMLGVL 170
Query: 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 396
+++LPYPS SFDM HC+RC + W DGILLLEVDRVL+PGGYFV + P +
Sbjct: 171 GTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARD---E 227
Query: 397 KENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVES 456
++ Q+ W + ++LCW+LV+++ + +W+K SCY+ R+PG P +C +D ++
Sbjct: 228 EDLQEEWKAMEALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDA 287
Query: 457 PYYRPLQPCI------GGTRNRRWIPIEERRNWPSRANLNK-----NELAVYGVHPEEFA 505
+Y P++ CI W+ WP R L + GV E F
Sbjct: 288 AWYVPMEACITPLPEVSHEVGGGWLE-----KWPER--LTAVPPRLASGQIGGVSAEAFK 340
Query: 506 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLE 565
DTE WK V + LL LI VRNV+DMNA FGGF +AL++
Sbjct: 341 ADTELWKRRVSKYKRLLKLLIDKGR---------------VRNVMDMNAGFGGFAAALID 385
Query: 566 KGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625
VWVMNVVP + LP+I DRG +G+ HDWCE F TYPRTYDL+HA+ L SL
Sbjct: 386 DP--VWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHADHLFSLY--- 440
Query: 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSD--ER 683
+ RC+ DI E+DRILRP G VIIRD +++ + + ++W+ R+ + E E+
Sbjct: 441 KKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEVRITDTEDGPHDPEK 500
Query: 684 LLICQK 689
+LI QK
Sbjct: 501 ILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 288 LDIGCGYGSFGAHLFSKELLTMCIANY---EASGSQVQLTLER-GLPAMIGSFASKQLPY 343
LD+GCG G L ++ L A + S + L +R ++G LP+
Sbjct: 1 LDVGCGTG-----LLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAE--DLPF 53
Query: 344 PSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
P SFD +LH D ++ L E+ RVLKPGG V
Sbjct: 54 PDESFDVVVSSLVLHHLP---DPER----ALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 287 ILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 334
ILD+GCG G L SKE L + G +V+ ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVR--------FVVA 52
Query: 335 SFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEVDRVLKPGG 379
+ LP+ SFD++ CA +D ++ LL E R+L+PGG
Sbjct: 53 DA--RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA--S 338
+ +LD GCGYGS L ++ + + Y S Q ++ ER GL I F S
Sbjct: 1 KRVLDFGCGYGSDLIDL-AERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59
Query: 339 KQLPYPS-----LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390
+ P+P F+++H + D L + R LK GG+ V + N
Sbjct: 60 AKDPFPDTYDLVFGFEVIHHIK---DKMD----LFSNISRHLKDGGHLVLADFIANL 109
|
Length = 224 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM---IGSFAS 338
+LD+GCG G L K + + S ++ E G + G
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 339 -KQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSP 386
QL SFD++ V D +L E+ RVLKPGG + + P
Sbjct: 66 LPQLQLEDNSFDVVISN--EVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 697 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.74 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.7 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.67 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.65 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.65 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.52 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.51 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.5 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.49 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.48 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.48 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.46 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.45 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.45 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.42 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.42 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.42 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.4 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.4 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.37 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.36 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.34 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.33 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.3 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.28 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.26 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.26 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.25 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.25 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.24 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.24 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.24 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.24 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.23 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.22 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.21 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.21 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.19 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.19 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.15 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.14 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.13 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.13 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.12 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.12 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.1 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.09 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.07 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.07 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.07 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.06 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.05 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.02 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.02 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.01 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.01 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.0 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.99 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.99 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.96 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.95 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.95 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.94 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.92 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.92 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.92 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.92 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.89 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.89 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.89 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.89 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.89 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.88 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.87 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.87 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.87 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.86 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.85 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.84 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.83 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.83 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.81 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.81 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.79 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.76 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.76 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.75 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.75 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.7 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.67 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.66 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.66 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.65 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.63 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.62 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.62 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.61 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.58 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.57 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.56 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.55 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.55 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.55 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.53 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.53 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.52 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.51 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.47 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.44 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.44 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.4 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.39 | |
| PLN02366 | 308 | spermidine synthase | 98.38 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.37 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.36 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.36 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.34 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.34 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.33 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.33 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.28 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.28 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.27 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.26 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.2 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.16 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.15 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.15 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.12 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.07 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.07 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.06 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.05 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.99 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.97 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.96 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.93 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.92 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.9 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.89 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.88 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.85 | |
| PLN02476 | 278 | O-methyltransferase | 97.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.82 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.8 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.77 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.77 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.76 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.76 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.74 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.74 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.74 | |
| PLN02823 | 336 | spermine synthase | 97.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.72 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.72 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.7 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.68 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.67 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.65 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.65 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.63 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.61 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.6 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.58 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.55 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.55 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.54 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.53 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.5 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.49 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.46 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.46 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.44 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.41 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.39 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.39 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.39 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.38 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.37 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.37 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.34 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.34 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.32 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.31 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.3 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.29 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.29 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.25 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.22 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.2 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.19 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.17 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.15 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.15 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.15 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.14 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.11 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.09 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.09 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.07 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.07 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.05 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.05 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 97.05 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.0 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.98 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.96 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 96.88 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.76 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.72 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.71 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.7 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.68 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.67 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.63 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 96.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.58 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.57 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.57 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 96.56 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 96.54 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.54 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.5 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.49 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.47 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 96.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.47 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.44 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.44 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 96.43 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.41 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.37 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 96.36 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.34 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.34 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.33 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.33 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.3 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.3 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.26 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.25 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.23 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.21 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.2 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.2 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.19 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.07 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 96.06 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.04 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 96.03 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.0 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.0 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.96 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.95 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.95 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.89 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.87 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.87 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.87 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 95.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.76 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 95.74 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.73 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.73 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 95.7 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 95.62 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 95.61 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.55 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.5 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.43 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.4 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.39 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.39 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 95.39 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 95.37 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.31 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.2 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.09 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 95.08 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.03 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.87 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 94.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.74 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.53 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 94.5 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.41 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.29 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.21 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.19 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 94.14 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.06 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.02 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.93 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.76 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.71 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.71 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 93.6 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 93.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 93.52 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 93.44 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 93.33 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.25 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.16 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 93.04 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 92.81 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 92.69 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 92.56 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 92.34 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 92.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 92.19 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 92.1 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.01 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.66 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 91.62 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 91.5 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 91.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 91.2 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.63 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 90.08 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 89.91 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 89.43 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 89.39 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 89.21 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.2 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 89.09 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 89.02 | |
| cd04789 | 102 | HTH_Cfa Helix-Turn-Helix DNA binding domain of the | 88.98 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 88.75 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 88.72 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.61 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 88.47 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.38 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.32 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 88.1 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 87.81 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 87.57 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.21 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 87.2 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 86.79 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 86.64 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 86.53 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 86.51 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 86.02 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 85.66 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 85.62 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.39 | |
| cd04775 | 102 | HTH_Cfa-like Helix-Turn-Helix DNA binding domain o | 85.04 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 84.95 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 84.02 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 83.87 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 83.85 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 83.77 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 83.3 | |
| PHA01634 | 156 | hypothetical protein | 83.29 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 83.27 | |
| PLN02476 | 278 | O-methyltransferase | 82.8 | |
| cd04790 | 172 | HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma | 82.3 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 81.8 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 81.02 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 80.9 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 80.85 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 80.79 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 80.57 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 80.15 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-140 Score=1149.73 Aligned_cols=496 Identities=45% Similarity=0.906 Sum_probs=468.8
Q ss_pred CccccCCchhhhhh--ccccccccccCCCC-ccccccccCCCCCCCCCCCCCCCCcccccccccchhHhhhhcccccccc
Q 005432 164 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 240 (697)
Q Consensus 164 ~~~PC~d~~~~~~~--~~~r~~~~er~C~~-~~r~rCL~~~p~gy~~P~~WP~srd~~W~~Nvp~~~~~~ls~~k~~q~W 240 (697)
|||||+|+++++++ .++|++|+|||||+ +++.+||+|+|.||+.|++||+|||++||+|+||++ |+++|..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999999 89999999999999 679999999999999999999999999999999999 6789999999
Q ss_pred cccchhhhccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005432 241 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 319 (697)
Q Consensus 241 ~~~d~~~~~F~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ 319 (697)
+..+++.+.|++++++| +++.+|++++.++++... .....+++||||||+|+|+++|+++++.+++++..|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999998 789999999999998621 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHh
Q 005432 320 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 399 (697)
Q Consensus 320 ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 399 (697)
++++|++||+++.+..+...+|||++++||+|||+.|++.|.++.+.+|.|++|+|||||+|+++.|..+. ..+++.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888889999999999999999999999988889999999999999999999998772 244567
Q ss_pred hhhhhhhhhhhhccceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccccCccccccCCCC-cccCCc
Q 005432 400 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 478 (697)
Q Consensus 400 ~~~W~~l~~la~~~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~~L~~Ci~~~p~~-~~~~~~ 478 (697)
...|+.|+.+++++||++++++++++|||||.+++||.+|+....|++|++.+|++++||++|++||+++|.. .++.++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 7899999999999999999999999999999999999999998889999999999999999999999999965 467789
Q ss_pred ccCCCCcccccCCcccee---cccCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccC
Q 005432 479 ERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH 555 (697)
Q Consensus 479 ~~~~WP~rl~~~~~~l~~---~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g 555 (697)
.+++||+||+++|+||.. .|.+++.|.+|+++|+++|++|++++...+ .+++||||||||||
T Consensus 311 ~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i---------------~~~~iRNVMDMnAg 375 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAI---------------KWGRIRNVMDMNAG 375 (506)
T ss_pred CCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccc---------------cccceeeeeeeccc
Confidence 999999999999999975 889999999999999999999999886444 56789999999999
Q ss_pred chhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCCCCCCCcchhh
Q 005432 556 FGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIF 635 (697)
Q Consensus 556 ~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l 635 (697)
||||||||.+ +|||||||||++++|||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++||
T Consensus 376 ~GGFAAAL~~--~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~---~rC~~~~il 450 (506)
T PF03141_consen 376 YGGFAAALID--DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK---DRCEMEDIL 450 (506)
T ss_pred ccHHHHHhcc--CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc---ccccHHHHH
Confidence 9999999987 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCC--CccEEEEEc
Q 005432 636 TEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 689 (697)
Q Consensus 636 ~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~--~~~~li~~K 689 (697)
+||||||||||++||||+.+++++|++||++|||+++++++|+++ +||||||||
T Consensus 451 lEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 451 LEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999999999986 699999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=371.74 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=175.4
Q ss_pred ccccccCCCCcccCCcccCCCCccc------ccCCccceeccc---------CccccccchhhHHHHHHHHHHhhccccc
Q 005432 463 QPCIGGTRNRRWIPIEERRNWPSRA------NLNKNELAVYGV---------HPEEFAEDTENWKTAVGNFWSLLSPLIF 527 (697)
Q Consensus 463 ~~Ci~~~p~~~~~~~~~~~~WP~rl------~~~~~~l~~~~~---------~~~~f~~d~~~w~~~v~~Y~~~l~~~~~ 527 (697)
..|++|+|.+|++|+ +||++. |+++++|+.++. +...|++++++|+++|.+|++.|.+|+.
T Consensus 35 ~~CLVp~P~gYk~P~----~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~ 110 (506)
T PF03141_consen 35 LRCLVPPPKGYKTPI----PWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIP 110 (506)
T ss_pred CccccCCCccCCCCC----CCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhh
Confidence 789999999999999 999966 788888876653 4577999999999999999999999883
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc---ccccccccccC
Q 005432 528 SDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAF 603 (697)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f 603 (697)
.. ...+.||++||+|||+|||||+|++ ++|.+|+++|.+.| +|+|||+|||+ ||++.+...||
T Consensus 111 ~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 111 LI-----------KWGGGIRTALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred cc-----------ccCCceEEEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC
Confidence 21 2347899999999999999999998 99999999999999 99999999998 66667778888
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc----------CHHHHHHHHHHHhhcCceeEE
Q 005432 604 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----------TARLIESARALTTRLKWDARV 673 (697)
Q Consensus 604 ~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----------~~~~~~~~~~~~~~~~W~~~~ 673 (697)
|. +|||||||++|...|.. .- ..+|+|+|||||||||||++. ..+++++|+++|++|||+..+
T Consensus 178 p~--~~fDmvHcsrc~i~W~~---~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 178 PS--NAFDMVHCSRCLIPWHP---ND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred Cc--cchhhhhcccccccchh---cc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 77 99999999999999983 22 469999999999999999963 358899999999999999999
Q ss_pred eeeccCCCccEEEEEccc
Q 005432 674 IEIESNSDERLLICQKPF 691 (697)
Q Consensus 674 ~~~e~~~~~~~li~~K~~ 691 (697)
.+ +++.|||||.
T Consensus 251 ~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 251 EK------GDTAIWQKPT 262 (506)
T ss_pred ee------CCEEEEeccC
Confidence 85 7799999985
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=188.35 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc--CCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~--~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..|++.+ ..++++|+++.|++.+++.. .++.+.+.++. .+++++++||+|+|..+ +
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~-l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL-L 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh-H
Confidence 3689999999999999999874 46899999999998876532 24556666764 57888899999999988 5
Q ss_pred ccccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++.++ ...++++++|+|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 55444 3689999999999999999987543
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=171.37 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
.+.+|||||||||.++..+++... ..+|+++|+|+.|++.|+++... +.++.+|+++|||+|++||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 348999999999999999998843 68899999999999999987543 67889999999999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+++.++.+++|+|++|||||||.+++.+.....
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 888899999999999999999999998865543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-17 Score=167.16 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
.+.+|||+|||||.++..++++......|+++|+|+.|++.|+++ + .++.+.++|++++|+++++||+|+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg- 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG- 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh-
Confidence 347999999999999999988744557899999999999999865 2 3678899999999999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++..+|..++|+|++|+|||||.+++.+...
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 7777889999999999999999999988643
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=161.23 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=90.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
+..+|||||||+|.++..++++......|+++|+|++|++.|+++. .++.+.+++++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3479999999999999988876223357999999999999997652 24668888999999999999999999
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++ +|+.+++..+|+|+.|+|||||++++.+....
T Consensus 153 ~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 153 YG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 88 77778899999999999999999999987653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=134.81 Aligned_cols=93 Identities=30% Similarity=0.463 Sum_probs=79.3
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--cEEEeecccCCCCCCCCccEEEeccccccccccHH
Q 005432 288 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 365 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~--~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~ 365 (697)
||||||+|.++..++++ ...+++++|+++++++.++++... ..+...+.+.+|+++++||+|++..+ ++|.+++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHH
Confidence 89999999999999998 356799999999999999987543 34788899999999999999999998 66668889
Q ss_pred HHHHHHHHhccCCeEEEE
Q 005432 366 ILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 366 ~~L~El~RvLKPGG~Lvi 383 (697)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-16 Score=158.76 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=110.2
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005432 249 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 328 (697)
Q Consensus 249 ~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg 328 (697)
.|++.+..|+..+..++.+++.+..... .....+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 6888888887766666666555432221 1235789999999999999998764 46899999999999999876
Q ss_pred CCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 329 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 329 l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
....+.++|.+.+|+++++||+|+++.+ ++|.+++..+|.++.++|||||.++++.+....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 5566778899999999999999999987 889999999999999999999999999987654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=131.55 Aligned_cols=98 Identities=30% Similarity=0.577 Sum_probs=82.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+ +++.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDV-LEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESS-GGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHH-Hhhcc
Confidence 358999999999999999988864 79999999999988 3333444444556677899999999998 77778
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++..+|+++.++|||||+++++++...
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999999999998753
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-14 Score=142.58 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=102.5
Q ss_pred ccchhhhHHHHHHHHhcccc--------ccccccCCCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHH
Q 005432 257 FDGVEDYSHQIAEMIGLRNE--------SNFILAGVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQL 323 (697)
Q Consensus 257 yd~~~~y~~~l~~lL~l~~~--------~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~-----~~sV~gvD~S~~ml~~ 323 (697)
|+.++.+++.+.+.+.++.. ..+.+....++||++||||..+..+.++-.. ...|+..|+++.|+..
T Consensus 66 F~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 66 FESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAV 145 (296)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHH
Confidence 34445555555555544433 1233556789999999999999999887322 2679999999999988
Q ss_pred HHHcC----C----CcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 324 TLERG----L----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 324 A~erg----l----~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|. + .+.+..+|++.|||++++||+.+..+. +....+++++|+|++|||||||+|.+-++..
T Consensus 146 gkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 146 GKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 87653 2 256788899999999999999999988 7777889999999999999999999877643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-14 Score=144.42 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=85.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.. +...++++|+|+.|++.|++++ +.+.++|++.++ ++++||+|+|+.+ +||.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-hhhCC
Confidence 34899999999999999998873 3467999999999999998875 455667777775 5679999999988 78888
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++..++++++++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 8999999999999999999998764
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=139.08 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=148.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|.|+|||+|..|..|+++ ++...|+|+|.|++|++.|+++.+++.|..+|...+. ++..+|+++++.+ +||.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhcc
Confidence 4589999999999999999988 5778899999999999999999999999988988774 4568999999987 99999
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecCceEEEEecc-cccccccCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKP 441 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~~~~IwqK~~-~~~Cy~~R~~ 441 (697)
+...+|..+...|.|||.|.+..|....+ .....|++.+++..|+........ .+++. ..+-|-+.-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL- 174 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL- 174 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh-
Confidence 99999999999999999999998854321 234556677777777666554333 23332 233333221
Q ss_pred CCCCCCCCCCCCCCCCccccCccccccCCCCcccCCcccCCCCcccccCCccceecccCccccccchhhHHHHHHHHHHh
Q 005432 442 GSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSL 521 (697)
Q Consensus 442 ~~~p~lC~~~~d~~~~wY~~L~~Ci~~~p~~~~~~~~~~~~WP~rl~~~~~~l~~~~~~~~~f~~d~~~w~~~v~~Y~~~ 521 (697)
.+.-|. .+.++..||++|..-- +--.|+.+..+.+|=++| |++.|+.-...|..+
T Consensus 175 --a~~~~r-vDiW~T~Y~h~l~~a~---aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 175 --APLACR-VDIWHTTYYHQLPGAD---AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLAL 229 (257)
T ss_pred --Ccccce-eeeeeeeccccCCCcc---chhhheeccccceecccc-------------------CHHHHHHHHHHHHHH
Confidence 133443 6678999999764321 112344444444333333 667888888999988
Q ss_pred hcccc
Q 005432 522 LSPLI 526 (697)
Q Consensus 522 l~~~~ 526 (697)
|..-.
T Consensus 230 l~~aY 234 (257)
T COG4106 230 LAEAY 234 (257)
T ss_pred HHHhC
Confidence 87654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-14 Score=144.58 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=92.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|||||||.|.++..|++.| ..|+|+|.++.+++.|+.+ ++.+.+.+..++++....++||+|+|..+ +
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-l 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-L 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-H
Confidence 34799999999999999999997 5699999999999988744 56666777777888777789999999999 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhh
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA 392 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~ 392 (697)
+|.++++.+++.+.+.+||||.+++++++.....
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 7789999999999999999999999999876543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=138.03 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=91.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
...+|||||||+|.++..+++.+ ....++++|+++.+++.++++.. ++.+...+...+++++++||+|++..+ +||.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhc
Confidence 34789999999999999998875 34568999999999998887643 456777888899998999999999988 7888
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.++..++.++.++|||||.++++++....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88999999999999999999999876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=147.08 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=88.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||||||+|.++..|++.. ...|+++|+|+.|++.|+++ ++ ++.+.++|+..+|+++++||+|+|..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45799999999999999998863 35799999999999887653 43 467888899999999999999999988
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++.++...+++++.|+|||||.|++.+..
T Consensus 196 -~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 -GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred -hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 555678889999999999999999998764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=140.38 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||||||||.++..+++.. ..+++|+|+|++|++.|+++. .+.+++++.+|+++++||+|+|+++ +|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFA-LHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecCh-hhccCC
Confidence 4799999999999999998873 357999999999999998763 3456789999999999999999998 677889
Q ss_pred HHHHHHHHHHhccCC
Q 005432 364 DGILLLEVDRVLKPG 378 (697)
Q Consensus 364 ~~~~L~El~RvLKPG 378 (697)
++++++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999999995
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=135.89 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=88.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++.......++++|+++.|++.|+++ +. ++.+..++...+++++++||+|++..+ +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~-l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG-L 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc-c
Confidence 47999999999999999987632345799999999999888754 22 456777888888998899999999987 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++.++..++++++.++|+|||++++.++..
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 777888899999999999999999987654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=147.66 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..|++.+ ..|+++|+++.|++.|+++. ..+.+.+++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45799999999999999998764 46899999999999987642 1466778888899988899999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
++|..++..+|+++.++|||||.+++++++...
T Consensus 208 -LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 208 -IEHVANPAEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred -HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 666788999999999999999999999986643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=139.33 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc--eeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~--~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
...+|||||||+|.++..+++.... ...++|+|+|+.|++.|.++..++.+.++++..+|+++++||+|++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999998865211 2368999999999999998877788888999999999999999998754
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhh
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 395 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr 395 (697)
...+.|+.|+|||||+|++..+......+++
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 1246899999999999999999877655443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-13 Score=139.71 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+|||||||+|..+..+++.. ...++++|+|+.|++.|+++.. .+.+...|+...|+++++||+|++..+++|+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 3799999999999999987652 3579999999999999987632 4667778888899999999999998875665
Q ss_pred c-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 361 D-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. .+...++++++++|||||+|+++++..
T Consensus 131 ~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 131 SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 4 367889999999999999999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-13 Score=137.50 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..+++.. ....++++|+|+.|++.|+++..++.+..+|+..+. ++++||+|+|+.+ +||.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCC
Confidence 34799999999999999998763 446799999999999999988666777777877665 4569999999988 78888
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+...+++++.++|||||.+++..+.
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8889999999999999999998653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=141.42 Aligned_cols=199 Identities=17% Similarity=0.221 Sum_probs=131.6
Q ss_pred cccccchhhhccccccccccchhhhHHHHHHHHhcccccccc-ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC
Q 005432 239 RMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFI-LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 317 (697)
Q Consensus 239 ~W~~~d~~~~~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~-~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S 317 (697)
+|++...+...+-+.+.||--... ++.+++..... .+. .....++||||+|.|..+..++.. ..+|++.|.|
T Consensus 53 ~~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~-~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S 125 (265)
T PF05219_consen 53 SWFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGF-SWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEAS 125 (265)
T ss_pred HHHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhcc-CCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCC
Confidence 466666666677788888854433 34444443211 111 124578999999999999999876 4569999999
Q ss_pred HHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH
Q 005432 318 GSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 397 (697)
Q Consensus 318 ~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~ 397 (697)
..|....+++|..+. +..++.-.+.+||+|.|.++ +....+|..+|++|++.|+|+|.++++...|.. +..
T Consensus 126 ~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~----pyV 196 (265)
T PF05219_consen 126 PPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR----PYV 196 (265)
T ss_pred HHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc----ccE
Confidence 999999999986533 33444444578999999998 777889999999999999999999999866643 122
Q ss_pred Hhhh-hhhhhhhhhhc--cceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccc
Q 005432 398 ENQK-RWNFVRDFVEN--LCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYR 460 (697)
Q Consensus 398 e~~~-~W~~l~~la~~--~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~ 460 (697)
|.-. .|.+..+..+- ..|+..+... + +...+..++.....+.||+|+ +|...+||+
T Consensus 197 E~~~g~~~~P~e~l~~~g~~~E~~v~~l----~-~v~~p~GF~v~~~tr~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 197 EFGGGKSNRPSELLPVKGATFEEQVSSL----V-NVFEPAGFEVERWTRLPYLCE--GDLYQSYYV 255 (265)
T ss_pred EcCCCCCCCchhhcCCCCCcHHHHHHHH----H-HHHHhcCCEEEEEeccCcccc--CcccCceEE
Confidence 2211 23333333221 2222221111 1 122233444455666799999 889999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=137.12 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=86.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-fpd~sFDlV~~~~ 355 (697)
...+|||||||+|.++..+++.+ .+|+++|+|+.|++.|+++ ++ ++.+.++++..++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999999885 4689999999999988765 32 3567777777764 6678999999998
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+ +++.+++..++.++.++|||||++++..++..
T Consensus 121 v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 V-LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred H-HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 8 77778888999999999999999999877643
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-13 Score=126.25 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=87.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~ 355 (697)
...+|||+|||+|.++..|++...+...++++|.++.|++.|+++ +. ++.+.+.|..+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 457999999999999999995433456799999999999998863 44 4788889998887 66 7999999998
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ +++..++..+++++.++|++||.+++.++.
T Consensus 82 ~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 V-LHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp T-GGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-hhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8 677788889999999999999999999886
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=132.13 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
...+|||||||+|.++..++++. .+...++++|+|+.|++.|+++ ..++.+...++..++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 34789999999999999988752 2356799999999999998765 12467788888888875 489999998
Q ss_pred ccccccc--cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~--d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +|+.+ +...++++++|+|||||.++++++..
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8 55553 34679999999999999999998754
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=129.52 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=88.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.......++++|.++.+++.++++ ...+.+...+...+++++++||+|++..+ ++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV-LQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech-hh
Confidence 37999999999999999988642446799999999999998876 33466777788888888899999999988 66
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..++..+++++.++|||||++++.++.
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 6778899999999999999999998864
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-13 Score=118.92 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecc-cCCCCCCCCccEEEecc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da-~~LPfpd~sFDlV~~~~- 355 (697)
..+|||||||+|.++..++++. ....++++|+|+.|++.|+++. .++.+.+.+. ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 4789999999999999999931 2456999999999999887653 4677777787 333343 4699999998
Q ss_pred cccccc--ccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~--~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..++. ++...+++++.+.|+|||++++.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 422232 3456899999999999999999763
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=137.57 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=86.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+...+++.+++++++||+|+++.+ +++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hhhC
Confidence 4799999999999998887752 2357999999999999988753 2456777888899999999999999988 6666
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..+|+++.|+|||||.+++..+.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 78889999999999999999987654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=126.99 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..|++++ .+|+++|+|+.|++.+++. ++. +.+.+.+...++++ ++||+|+|+.+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVV-L 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecc-h
Confidence 3789999999999999999985 3689999999999887643 333 55666777777775 57999999988 5
Q ss_pred cccc--cHHHHHHHHHHhccCCeEEEEE
Q 005432 359 DWDQ--KDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 359 h~~~--d~~~~L~El~RvLKPGG~Lvis 384 (697)
|+.+ +...++.++.++|||||++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5443 3468999999999999996654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-13 Score=117.54 Aligned_cols=93 Identities=25% Similarity=0.402 Sum_probs=74.4
Q ss_pred EEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 287 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g--~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
|||+|||+|..+..+++.. .....++++|+|++|++.++++. .++.+.++|..++++.+++||+|+|.++.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998763 12368999999999999998764 78899999999999989999999996663554
Q ss_pred ccc--HHHHHHHHHHhccCCe
Q 005432 361 DQK--DGILLLEVDRVLKPGG 379 (697)
Q Consensus 361 ~~d--~~~~L~El~RvLKPGG 379 (697)
..+ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 433 3679999999999998
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-12 Score=125.20 Aligned_cols=97 Identities=15% Similarity=0.304 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.+|||+|||+|.++..+++++ ..|+++|+|+.|++.+++ .++++.+..++....+++ ++||+|+|+.+ +|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~-~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVV-FM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecc-cc
Confidence 3689999999999999999885 468999999999987654 356666666676666665 58999999988 44
Q ss_pred cc--ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 360 WD--QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 360 ~~--~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+. ++...++++++++|||||++++.+
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 44 234679999999999999966653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-12 Score=136.27 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=82.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~--er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++.+. ..|+|+|+|+.|+..+. ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v- 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV- 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-
Confidence 47999999999999999998863 35999999999886432 22 2356778888899998 789999999988
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++|..++..+|++++++|+|||.+++.+.
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 55677888999999999999999999864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-12 Score=142.14 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|..+..+++.. ...++++|+|+.|++.|+++. ..+.+.++|...+++++++||+|+|..+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 35799999999999999998762 357999999999999987652 2466778888888998899999999988 5
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|.+++..++++++|+|||||.++++++..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 666788899999999999999999998754
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=128.99 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
...+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+.+.++..+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4478999999999999888763 12456899999999999999865 22 466777888888775 499999998
Q ss_pred cccccccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +|+.++ ...++++++++|||||.|++++...
T Consensus 134 ~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred H-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8 555543 2579999999999999999998543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-12 Score=131.19 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=86.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...+|||||||+|..+..+++.......++++|+++.|++.|+++ +. ++.+...+.+.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 347999999999998877666522335799999999999998864 33 456777888899999899999999876
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.++...+++++.|+|||||+|++++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 7777888899999999999999999987643
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=131.96 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--c----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--R----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--r----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|||||||+|.++..++..+. ..|+|+|+|+.|+..+.. + ...+.+..++.+.+|.. ++||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 348999999999999999988753 368999999999865421 1 12445666777788865 48999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++|..++..+|++++++|||||.|++.+..
T Consensus 198 -L~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 -LYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred -hhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 555678889999999999999999998653
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-12 Score=116.24 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=58.6
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCC--CCCCCccEEEeccccccc
Q 005432 288 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LP--fpd~sFDlV~~~~~llh~ 360 (697)
||||||+|.++..++++. +..+++++|+|+.|++.|+++ . .............. ...++||+|++..+ +||
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhh
Confidence 799999999999998874 678899999999999766554 1 12222322322222 12259999999998 666
Q ss_pred cccHHHHHHHHHHhccCCeEE
Q 005432 361 DQKDGILLLEVDRVLKPGGYF 381 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~L 381 (697)
.++...+++.++++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 688899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=121.42 Aligned_cols=100 Identities=16% Similarity=0.049 Sum_probs=81.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..|++.. ...+++|+|+|+.|++.|+++...+.+.++++.. |+++++||+|+|..+++|..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 34789999999999999998762 2457999999999999998865556677778777 889999999999998666543
Q ss_pred -cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 363 -KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 363 -d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..++++++.|++ ++++++.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 2367999999998 568888775
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=127.04 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHHcC--------C-----------------
Q 005432 283 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------L----------------- 329 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~gvD~S~~ml~~A~erg--------l----------------- 329 (697)
...+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34799999999996 4555555422 2468999999999999998631 1
Q ss_pred -------CcEEEeecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 330 -------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 -------~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.+.+.|....++++++||+|+|.++++++. ++..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35677788888888888999999999855543 233579999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=121.70 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=84.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCcE-EEeecccCCC-CCCCCccEEEecccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~~-~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
..|||||||||..-.++--. +..+|+++|+++.|-+++.++ ..++. +++++.+++| .+++|+|+|+|..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV- 154 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-
Confidence 46899999999986666432 456799999999998776543 34455 7889999999 89999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+--..++.+.|+|+.|+|||||.+++.+++..
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 44467899999999999999999999988654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=118.26 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=90.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+.+|||||||+|..+..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999888642 356899999999999877643 44 36677888888777 679999998743
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
.+...++.++.++|||||++++...... -..+..+++..+|.+..+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeee
Confidence 4567899999999999999999875421 123566677778887644
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=125.91 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||||||+|.++..|++.| ..|+++|.|+.+++.+++ .++++.+...|....++ +++||+|++..+ +++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v-l~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVV-LMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcch-hhh
Confidence 589999999999999999886 468999999999987754 35666666667666555 678999999987 554
Q ss_pred cc--cHHHHHHHHHHhccCCeEEEEEe
Q 005432 361 DQ--KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 361 ~~--d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+ +...+++++.++|+|||++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 43 34679999999999999977654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=122.41 Aligned_cols=99 Identities=28% Similarity=0.420 Sum_probs=81.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+|||||||+|.++..+++.. ...+++++|+|+.+++.++++ ++ .+.+...|....|++ ++||+|++..+ ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 69999999999999998864 335799999999999888764 33 345666677666665 48999999988 55
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..+...+++++.++|||||++++.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6677889999999999999999998874
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=139.84 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=84.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP--fpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++. .+...++|+|+|+.|++.|+++ +.+..+.++|+..+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999999888875 3557899999999999988765 345566777888888 888999999999874
Q ss_pred cccc------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++. .+...+|+++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4332 24468999999999999999998853
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=118.50 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
...+|||+|||+|.++..+++.......++++|+++.+++.++++. ..+.+...++..+++++++||+|++..+ ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-LR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-eC
Confidence 3479999999999999999887533257999999999999888764 2456777888888888889999999887 66
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+..++..+++++.++|+|||++++.+..
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6778889999999999999999987753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=126.35 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEe
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~ 335 (697)
...+.+.+.+.+.++ .+|||||||.|.++.+++++. .++|+++.+|+++.+.++++ |+. +.+..
T Consensus 49 ~k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 334444444454444 899999999999999999982 35699999999999888654 543 55666
Q ss_pred ecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 336 FASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|..+++. +||.|++..++.|.. .+...+++++.++|||||.+++.....
T Consensus 119 ~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 119 QDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp S-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred eeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 67666543 999999999966664 455789999999999999999876644
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-11 Score=130.58 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+.+|||||||+|.++..++++. ...|+++|+|++|++.|+++. +.+.+...+...+ +++||+|++..++.|..
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCC
Confidence 3799999999999999998762 347999999999999998763 4455555565544 46899999998844432
Q ss_pred -ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 362 -QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 362 -~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+...+++++.++|||||++++.+...
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 334689999999999999999987643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=117.49 Aligned_cols=104 Identities=25% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|.++..+++.+....+++++|.++.+++.++++. .++.+...+...+++++++||+|++..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~- 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG- 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc-
Confidence 478999999999999999887532468999999999999887752 2456777788888888889999999887
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++..+|.++.++|+|||.+++.+...
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 6667788899999999999999999877543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-11 Score=118.75 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=84.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
++.+|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++.-..++..--.|++++||.|+++.+ ++...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt-LQ~~~ 89 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT-LQAVR 89 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH-HHhHh
Confidence 3489999999999999999886 35678999999999999999999987776664323499999999999998 77778
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+.+|.|+.|+ |...+++.|+.
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCh
Confidence 899999999887 55778887764
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-11 Score=120.37 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=82.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecc-cCCC--CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da-~~LP--fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ +. ++.+.+.++ +.++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4789999999999999998763 446799999999999988753 33 466777887 7776 7788999999986
Q ss_pred ccccccc--------cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~--------d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ..|.. ....+++++.++|||||+|+++....
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 5 34322 13578999999999999999987643
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=125.02 Aligned_cols=100 Identities=23% Similarity=0.308 Sum_probs=81.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---------cEEEeecccCCCCCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---------AMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---------~~~~~~da~~LPfpd~sFDlV~ 352 (697)
+++|||+|||+|.++..|++.| ..|+|+|.++.|++.|+++.- | ..+.+.+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4789999999999999999986 569999999999999987621 1 11233333333 24599999
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|+.+ ++|..|+..++..+.++|||||.+++++.+...
T Consensus 164 csev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999 777889999999999999999999999986544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=116.23 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|.++..|++. .....+++++|+|+.|++.|+++. .++.+...++..+++++++||+|+|+.+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~- 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF- 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe-
Confidence 4579999999999998888753 112357999999999999998763 2345556677778888889999999998
Q ss_pred ccccccH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+.+++ ..+|+++.|+++ |.+++.+...
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 6666554 469999999998 6667766544
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=113.13 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+++||+|||.|.++..|+.+ .-.++++|.|+..++.|++|- ..+.+.+++.... .|+++||+|+++.+++.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 3478999999999999999988 467999999999999999873 3466777765443 57889999999999665
Q ss_pred ccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 360 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.+ +...++..+...|+|||.|++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 543 235789999999999999999876
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=113.36 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.++||+|||.|..+.+|+++|+ .|+++|.|+..++.+ .+.++++...+.|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 47999999999999999999985 489999999888644 45688888888888877776 58999999866444
Q ss_pred cccc-HHHHHHHHHHhccCCeEEEEEeC
Q 005432 360 WDQK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..++ ...++..+...++|||++++...
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 3332 35789999999999999998654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=114.23 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-C
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~LPfp-d 345 (697)
..+|||+|||.|..+.+|+++|. .|+|+|+|+.+++.+. +.++ .+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 36999999999999999999975 5899999999998753 3332 455677787777643 4
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005432 346 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.||.|+-..+++|..++. ..++..+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799999887755554333 5699999999999998666644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=115.04 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..++++......|+++|+++ |. ...++.+.++|+...+ +.+++||+|+|..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 47899999999999999988754446799999987 21 1234667777877753 6678999999986
Q ss_pred ccccccccH-----------HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d~-----------~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ .++..++ ..+|.++.++|||||.|++..+..
T Consensus 126 ~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 A-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred C-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 5 4443321 358999999999999999987643
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=99.77 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++++. ....++++|.++.+++.+++. +. ++.+...+... ++...++||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3689999999999999998863 236799999999999887643 22 34555555443 3333468999999765
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+ ....+++++.++|||||+|++...
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 235899999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-10 Score=118.92 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=94.7
Q ss_pred ccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 249 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 249 ~F~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
.|....... +......+.+.+.+.+.+| .+|||||||-|.++.+++++. .+.|+|+++|++|.+.++++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHH
Confidence 344443333 3335556677777777766 999999999999999999983 46799999999999887663
Q ss_pred ----CCC--cEEEeecccCCCCCCCCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 328 ----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 328 ----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
|++ +.+...| .+...+.||-|++...+.|... +...+++.++++|+|||.+++.+.+..
T Consensus 115 ~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 115 IAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred HHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 655 3443333 3433456999999999666553 357899999999999999999876553
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-10 Score=112.87 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeec-ccC
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA-SKQ 340 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d-a~~ 340 (697)
...+...+++.+..+ ...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++-+...+...| .+.
T Consensus 35 em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~G 105 (270)
T KOG1541|consen 35 EMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEG 105 (270)
T ss_pred HHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC
Confidence 333444455544332 46789999999999999998886 45899999999999999876654443333 377
Q ss_pred CCCCCCCccEEEecccccccc-------ccHH----HHHHHHHHhccCCeEEEEEeCCCC
Q 005432 341 LPYPSLSFDMLHCARCGVDWD-------QKDG----ILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 341 LPfpd~sFDlV~~~~~llh~~-------~d~~----~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+||..++||.|++..+ ++|. .++. .++..++.+|++|+..++...+.+
T Consensus 106 lpfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999999876 6765 2222 467789999999999999877544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.7e-10 Score=109.35 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+.+|||||||+|.++..++... ....++++|.++.|++.+++ .++ ++.+.++++..++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 4799999999999999887653 34679999999999876653 344 46777788877643 57999999864 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+...+++.+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3455788999999999999998754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=105.45 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++++ ....++++|+++.+++.+++. ++. +.+...|... +.++++||+|+|+-- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 3789999999999999999885 445699999999999888653 454 5555555432 344689999999965 4
Q ss_pred ccccc-----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQK-----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d-----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+...+ ...++.+..+.|||||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 43332 35789999999999999977554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-09 Score=118.29 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++ .+.+...|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999999888652 346799999999999988764 33 24455555432 2345689999996421
Q ss_pred ccc---------------------ccc----HHHHHHHHHHhccCCeEEEEEe
Q 005432 358 VDW---------------------DQK----DGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~---------------------~~d----~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+.. ..+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 110 011 1246778899999999999864
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.99 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.+ ..++|+|++++|++.|+++. . ++.+.+.+...++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35899999999999999998874 46899999999999887652 2 4567777777665 78999999988
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEE
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis 384 (697)
++|+. ++...++.++.+++++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 55554 23467899999999988776664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-10 Score=116.60 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=83.0
Q ss_pred ccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC
Q 005432 251 RSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 329 (697)
Q Consensus 251 ~~~~~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl 329 (697)
...+..| +....|....-+.+..... ..+.++|||||+|..+..++++ .-+|+++|+|++|++.|++.-.
T Consensus 6 ~~~a~~Y~~ARP~YPtdw~~~ia~~~~------~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 6 DKQAADYLNARPSYPTDWFKKIASRTE------GHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred cccHHHHhhcCCCCcHHHHHHHHhhCC------CcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCC
Confidence 3344445 2334454444444433332 3458999999999777777766 3568999999999999987532
Q ss_pred C------cEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCe-EEEEEeC
Q 005432 330 P------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSP 386 (697)
Q Consensus 330 ~------~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG-~Lvis~p 386 (697)
. ......+...|--.++|.|+|+|..| +||.+ .+.++++++|+||+.| .+++=..
T Consensus 77 ~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 77 VTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWFD-LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred cccccCCccccccccccccCCCcceeeehhhhh-HHhhc-hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 1 11222222233334899999999999 99984 5689999999999866 6665433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-10 Score=112.33 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC---CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP---fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..++++. +...++++|.++.+++.|+++ ++ ++.+..+++..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887643 33 5667777876654 5667999999886
Q ss_pred ccccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. .+|.... ..++.++.++|||||.|++.+..
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5 4554321 46899999999999999998764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=104.40 Aligned_cols=99 Identities=19% Similarity=0.168 Sum_probs=76.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..+++.+. +++++|.++.+++.++++ +..+.+...|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998753 799999999999888764 445566666654443 4589999999763332
Q ss_pred ccc--------------------HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 361 DQK--------------------DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~~d--------------------~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+. ...++.++.++|||||.+++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 211 2457999999999999999987644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=109.12 Aligned_cols=95 Identities=18% Similarity=0.079 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|..+..+++.......++++|.++++++.|+++ +.. +.+..+|........++||+|++..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 37999999999999998887522234799999999999888753 332 56677777665445679999999877
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.++ +..++.++|+|||+|++..
T Consensus 152 ~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 AST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cch------hhHHHHHhcCcCcEEEEEE
Confidence 332 2357889999999998864
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=110.24 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=82.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC-CCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
...+|||||||+|.++..+++.+ ..++++|+++.+++.++++ +..+.+...+...++ ..+++||+|++..+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 34789999999999999998874 4589999999999888764 344556656665554 34579999999988
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.++|+|||.++++.+..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 6666788899999999999999999987753
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=108.34 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-C-CCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-L-Pfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.. ...++++|+++++++.++++++. +.++++.. + ++++++||+|+|+.+ +++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT-LQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-hHcC
Confidence 3689999999999999987653 34578999999999999877654 44456544 4 477889999999988 6778
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..+|+++.|++++ ++++.+.
T Consensus 89 ~d~~~~l~e~~r~~~~---~ii~~p~ 111 (194)
T TIGR02081 89 RNPEEILDEMLRVGRH---AIVSFPN 111 (194)
T ss_pred cCHHHHHHHHHHhCCe---EEEEcCC
Confidence 8899999999887664 4555543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=116.00 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=76.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..++++. ....++++|+++.+++.|++ .++...+...|... ..++.||+|+|+.. +|.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-ccC
Confidence 589999999999999999874 34579999999999988864 24555555545432 23578999999987 554
Q ss_pred c-----ccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 361 D-----QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~-----~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ...+.++.++.+.|||||.|++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2236799999999999999998764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=113.76 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=73.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H-
Confidence 47999999999999998887753 4799999999999988764 33322221122123445679999999854 2
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.....++.++.++|||||+++++....
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 223578999999999999999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-11 Score=118.52 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-CCC-CCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-YPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~LP-fpd~sFDlV~~~~~llh~ 360 (697)
..+++||+|||||.++..|... ...++|+|+|++|++.|.++++--...++++. .++ ..++.||+|++..+ +.+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHh
Confidence 3689999999999999998766 45589999999999999999876555555544 233 55678999999998 666
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
..+.+.++.-....|+|||.|.||.-..
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 6778889999999999999999997543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=108.62 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
.....+.+.+...++ .+|||||||+|.++..+++......+++++|.++.+++.|+++ +. ++.+..+
T Consensus 63 ~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 63 HMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred HHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 334445555544443 8999999999999999887632345799999999999988764 33 4677778
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|+.....+.+.||+|++... .+ .....+.+.|||||.+++..
T Consensus 135 d~~~~~~~~~~fD~I~~~~~-~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAA-GP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcCCCcCEEEECCC-cc------cchHHHHHhhCCCcEEEEEE
Confidence 87766666789999998865 22 12346777999999999854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-09 Score=108.43 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=83.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC-CCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp-d~sFDlV~~~~~ 356 (697)
...+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...+...++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35789999999999999998764 3489999999999888764 34 466666777666654 378999999987
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++..+|.++.++|+|||.+++++...
T Consensus 122 -l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 122 -LEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -HHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6777888899999999999999999987654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=108.38 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ ++.+..+|........++||+|++..+ .
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~-~ 156 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA-G 156 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-c
Confidence 47999999999999999988743345699999999999888754 33 456677776655444568999998765 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. .+...+.+.|+|||++++..
T Consensus 157 ~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 157 P------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred c------cccHHHHHhcCcCcEEEEEE
Confidence 2 23456889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=113.37 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH--HHHc--CCCc--EEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER--GLPA--MIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~--A~er--gl~~--~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|||||||.|.++..|+.+|. ..|+|+|++.-..-. +.++ +... .......+.+|. .++||+|+|.++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 458999999999999999999873 468999999765422 1122 2222 223357788888 789999999999
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++| ..+|-..|.+++..|+|||.+++.+...
T Consensus 192 LYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 192 LYH-RRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hhc-cCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 555 5788899999999999999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-09 Score=111.50 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHh-hcCCceeEEEEecCCHHHHHHHHHcC-----C--CcEEEeecccCCCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLERG-----L--PAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La-~~g~~~~sV~gvD~S~~ml~~A~erg-----l--~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
.+++|+|||||.|.++..++ ....+...++++|.++++++.|++.. + .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 46899999999886655443 33345678999999999999887532 2 3677888877664345789999999
Q ss_pred ccccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 355 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 355 ~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++++|. ++...+|..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 757774 677899999999999999999986
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-09 Score=106.31 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-C
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~LPfp-d 345 (697)
..+|||+|||.|..+..|+++|+ .|+|+|+|+.+++.+. ++++ .+.+.++|...++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999875 5899999999998763 4443 245566777776533 2
Q ss_pred CCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEE
Q 005432 346 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
..||+|+-..++++..++. ..++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999887755544333 57999999999999975543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=114.05 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=73.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|||+|||+|.++..+++++ +..+|+++|.|+.+++.|++. +. .+.+...+... .+++++||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 689999999999999999874 457899999999999988754 22 23444444322 234568999999866
Q ss_pred cccccc-----cHHHHHHHHHHhccCCeEEEEEe
Q 005432 357 GVDWDQ-----KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~-----d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+|... ...+++.++.++|+|||.|++..
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 44321 12578999999999999999985
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=101.37 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ...+++++|.++.+++.|+++ ++ .+.+...+.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 4789999999999999998874 446799999999999888653 32 3445555542 3343 58999998765 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.....++.++.++|+|||++++....
T Consensus 108 ---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 108 ---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 23457899999999999999997653
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=110.37 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+...|....++++ +|+|++.++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 34799999999999999999884 4567899997 6788777543 44 3556677776666654 799999888
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|.++. ..+|++++++|||||++++.+...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 55555433 579999999999999999998643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=109.34 Aligned_cols=94 Identities=23% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||||||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+ .++..+.+||+|+|+.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~-~ 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANIL-A 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCc-H
Confidence 347999999999999988887753 3599999999999988764 221111 12222237999998754 1
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.....++.++.++|||||++++++...
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 223578999999999999999998753
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-09 Score=103.59 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=66.4
Q ss_pred EEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEE
Q 005432 312 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 312 ~gvD~S~~ml~~A~erg--------l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
+|+|+|+.|++.|+++. .++.+.++|++++|+++++||+|++.++ +++.+++..+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999996542 2467888999999999999999999988 67778899999999999999999999
Q ss_pred EeCCC
Q 005432 384 TSPLT 388 (697)
Q Consensus 384 s~p~~ 388 (697)
.+...
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 98754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=114.37 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC--CCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L--Pfpd~sFDlV~~~~~ 356 (697)
...+||||||+|.++..++.+. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4689999999999999999884 557899999999998776543 44 456777787654 578899999998876
Q ss_pred cccccccH------HHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~------~~~L~El~RvLKPGG~Lvis~p 386 (697)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5664332 4799999999999999999764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-09 Score=95.60 Aligned_cols=100 Identities=25% Similarity=0.400 Sum_probs=77.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.++.+ +. ++.+.+.|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999886 57899999999999988764 22 4677888877765 78899999999865
Q ss_pred cccccc-------cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~-------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332211 124689999999999999998765
|
... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-09 Score=106.27 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=96.9
Q ss_pred ccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCC-ceeEEEEecCCHHHHHHHHHcC-----
Q 005432 255 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERG----- 328 (697)
Q Consensus 255 ~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~-~~~sV~gvD~S~~ml~~A~erg----- 328 (697)
.+|....-....+-+++..... ...+||+||||.|.....+++... ....+.+.|.|+.+++..+++.
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~ 122 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES 122 (264)
T ss_pred cccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh
Confidence 3444444455566666654433 233899999999999988887531 2267999999999999887653
Q ss_pred -CCcEEEeecccC--CCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCCChhhhhhh
Q 005432 329 -LPAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 396 (697)
Q Consensus 329 -l~~~~~~~da~~--LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~ 396 (697)
..+.+..++... -|.+.+++|.|++++++....++. ..++.++.++|||||.+++.|.+......+|.
T Consensus 123 ~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred hhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 122233333333 356788999999999966655444 57999999999999999999998877665544
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=108.77 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccC-CCCCCCC---cc-EEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS---FD-MLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~-LPfpd~s---FD-lV~ 352 (697)
..+|||+|||+|..+..|++......+++++|+|++|++.++++ ++++...++|+.. ++++... .+ +++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999999988743246799999999999888764 2344556777765 4444332 23 333
Q ss_pred ecccccccccc--HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 353 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+..+ +++.+. ...+|++++++|+|||.|+|......
T Consensus 144 ~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 144 PGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred eccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3334 444432 35699999999999999998765543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=87.42 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=74.9
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCcEEEeecccCCCC-CCCCccEEEecccccc
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 359 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~~~~~~da~~LPf-pd~sFDlV~~~~~llh 359 (697)
+|||+|||+|.++..+++. ...+++++|.++.+++.+++. . ....+...+...... ..++||+|++..+ ++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-ee
Confidence 4899999999999999873 356799999999999887721 1 234455556555543 5578999999988 55
Q ss_pred c-cccHHHHHHHHHHhccCCeEEEEE
Q 005432 360 W-DQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 360 ~-~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
+ ......+++.+.+.|+|||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 566678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=107.83 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCCCCCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
+.+|||||||+|.++..+++.+ ..|+++|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4799999999999999999875 46999999999999988762 1234555554433 578999999
Q ss_pred ccccccccccH-HHHHHHHHHhccCCeEEE
Q 005432 354 ARCGVDWDQKD-GILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 354 ~~~llh~~~d~-~~~L~El~RvLKPGG~Lv 382 (697)
..+++|+.++. ..++..+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99966654333 245666654 45665544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=105.63 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccC----CCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQ----LPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~----LPfpd~sFDlV~~~~~ 356 (697)
+.+|||+|||+|.++..+++... ...|+++|.++.|++.+.++ ..++.+..+|+.. .+++ ++||+|++...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA 150 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC
Confidence 47999999999999999988632 34799999999988755332 1245555566543 1233 46999996533
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ......++.++.|+|||||.++++.+
T Consensus 151 -~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 151 -Q--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred -C--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 11124578999999999999999643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=102.51 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..|++.+ ..++++|+|+.|++.|+++ +. .+.+..++ ++..+++||+|+|..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34789999999999999999875 3499999999999998765 22 34455555 4555689999999988
Q ss_pred cccccc-cHHHHHHHHHHhccCCeEEE
Q 005432 357 GVDWDQ-KDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~~-d~~~~L~El~RvLKPGG~Lv 382 (697)
++|+.. +...+++++.+.+++++.+.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 555442 33568888888776544433
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=100.86 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
...+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...+... ++..++.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 347999999999999998876522345799999999999887654 32 34555566654 333346899999864
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 3 24567899999999999999998655
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=102.63 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=74.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.+ ...++++|.++.+++.++++ ++.+.+...|... .+++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4799999999999999998864 24789999999999877653 4555566666544 356679999999843221
Q ss_pred ccc--------------------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~--------------------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
... ....++.++.++|||||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0245788899999999999986553
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=105.34 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=81.6
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCcE
Q 005432 257 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAM 332 (697)
Q Consensus 257 yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~ 332 (697)
|..-+.|...++..+..... .+.-.+..+|||+|||+|.++.++++..-..-.|+++|+++.| ++.++++ .++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~ 184 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIV 184 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCE
Confidence 43334455555555432222 1112345799999999999999999873334579999999864 4555443 3455
Q ss_pred EEeecccC---CCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 333 IGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 333 ~~~~da~~---LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....|+.. +....++||+|++... . .++...++.++.++|||||+|+|...
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 55556542 2223458999998864 2 23344677799999999999999543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=105.50 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=91.9
Q ss_pred ccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005432 249 SFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 249 ~F~~~~~~y--d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
.|......| +..+.-.+.+.+.+..... .+|||+|||.|.++..+++.. +...++.+|.+...++.|++
T Consensus 130 ~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~ 200 (300)
T COG2813 130 TFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARK 200 (300)
T ss_pred EEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHH
Confidence 455555555 4445555667777665444 489999999999999999985 46789999999999998875
Q ss_pred c----CCCcEEEeecccCCCCCCCCccEEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeC
Q 005432 327 R----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 327 r----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ++....+..+....+.++ +||+|+|+-- +|-..+. .+++.+..+.|++||.|.|..-
T Consensus 201 Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPP-fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 201 NLAANGVENTEVWASNLYEPVEG-KFDLIISNPP-FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred hHHHcCCCccEEEEecccccccc-cccEEEeCCC-ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 4 344422223334455555 9999999977 4433222 3789999999999999999875
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=106.92 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCC-CCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd-~sFDlV~~~~~l 357 (697)
++.+|||+|||+|.++...++.| ...+.|+|+++-.++.|++. +++..........+..+. +.||+|+|+-.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 45899999999999999999987 34689999999999888764 344211111111222333 599999999541
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+-...+..++.+.|||||++++|....
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 113578999999999999999999753
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=106.37 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG- 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~l- 357 (697)
+.+|||+|||+|.++..++..+ ..++|+|+++.|++.|+++ ++. +.+...|+.++|+++++||+|+++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 4789999999999988876654 4689999999999877643 433 467788999999988899999996321
Q ss_pred ----ccc--c-ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 ----VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 ----lh~--~-~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
... . .....++.++.++|||||++++..+.
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 010 1 11357999999999999999998874
|
This family is found exclusively in the Archaea. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-10 Score=111.78 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=126.7
Q ss_pred chhhhccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 005432 244 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 323 (697)
Q Consensus 244 d~~~~~F~~~~~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~ 323 (697)
..+...|-+.++||-...+ ++++++..... .+. ..+.++||+|+|.|..+..++.. ..+|.+.+.|..|...
T Consensus 78 ~TdING~lgrGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~r 149 (288)
T KOG3987|consen 78 QTDINGFLGRGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDR 149 (288)
T ss_pred hhccccccccCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHH
Confidence 3444478888888754443 66777765532 222 23478999999999999999876 4568899999999999
Q ss_pred HHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccC-CeEEEEEeCCCChhhhhhhHHhhhh
Q 005432 324 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNPQAFLRNKENQKR 402 (697)
Q Consensus 324 A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKP-GG~Lvis~p~~~~~~~lr~~e~~~~ 402 (697)
.+.++-++.- .....-.+-+||+|.|.+. +..+.++.++|++++.+|+| .|.++++-..+..+.--. .....
T Consensus 150 L~kk~ynVl~----~~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~--N~~g~ 222 (288)
T KOG3987|consen 150 LKKKNYNVLT----EIEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVET--NTSGL 222 (288)
T ss_pred HhhcCCceee----ehhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeec--CCCCC
Confidence 9888755432 2222233457999999987 77778889999999999999 899888765554321100 01123
Q ss_pred hhhhhhhhhccceEEeeecCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCccccCcc
Q 005432 403 WNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQP 464 (697)
Q Consensus 403 W~~l~~la~~~~w~ll~~~~~~~IwqK~~~~~Cy~~R~~~~~p~lC~~~~d~~~~wY~~L~~ 464 (697)
|.+...+.+..+-.-..+ ..-+.....+..|........|++|+ +|++..+|+-.+.
T Consensus 223 ~~rPdn~Le~~Gr~~ee~---v~~~~e~lr~~g~~veawTrlPYLCE--GDm~ns~Y~L~Da 279 (288)
T KOG3987|consen 223 PLRPDNLLENNGRSFEEE---VARFMELLRNCGYRVEAWTRLPYLCE--GDMHNSFYWLIDA 279 (288)
T ss_pred cCCchHHHHhcCccHHHH---HHHHHHHHHhcCchhhhhhcCCeecc--cccccceEEecce
Confidence 444444443322211100 00000011122233344566799999 8999999985443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=98.74 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
.+.+|||||||+|.++..++++......++++|+++.+ ....+.+.+++..+.+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 34799999999999999988764344569999999865 1224455666665532 456789999986
Q ss_pred cccc---cccc-------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 355 RCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~ll---h~~~-------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+.. +|.. +...++.++.++|+|||++++..+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4311 1111 1257899999999999999997653
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-08 Score=95.13 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCCCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+|||+|||+|.++..+++++ .+++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 4789999999999999999873 5789999999999888643 332 5555555443 345568999998754
Q ss_pred ccccc--------------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~--------------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.. .....+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 22210 11245799999999999999887653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-08 Score=99.73 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++.. ....++++|+++.+++.|++. ++. +.+..++... ++++++||+|+|+....
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999998763 345799999999999888653 443 5666667654 46678999999964311
Q ss_pred c------cccc-------------------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h------~~~d-------------------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. +..+ ...++.++.++|+|||.+++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 0000 12578899999999999999753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=106.30 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
++.+|||||||+|.++...++.|. ..|+++|+++..++.|++. ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 447999999999999999998874 4689999999999888754 5544443322 22234589999999854 1
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+-...++..+.++|+|||+|++|....
T Consensus 236 ---~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 113468888999999999999998854
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-08 Score=97.43 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ..++++|.++.+++.|+++ ++ ++.+...+......+.++||+|++..+ .
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 4799999999999999887763 3689999999999888754 33 355666665433223478999999865 3
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ .+..++.+.|+|||.+++...
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEEc
Confidence 2 234567899999999998765
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-08 Score=104.01 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=96.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
...++|||||.|....+|..++ +..++-+|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 4679999999999999999886 45688999999999988754 44555678899999999999999999987 999
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhh
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 396 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~ 396 (697)
..+...-+..++..|||+|.|+-+......+.++|-
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~ 185 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC 185 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHH
Confidence 999999999999999999999999888877776654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-08 Score=95.70 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+...++.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4799999999999999987653 346799999999999888753 33 35566566543 222223467765432
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+...++.++.++|+|||++++..+.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234568999999999999999998764
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-08 Score=107.55 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCccEEEecc-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR- 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP--fpd~sFDlV~~~~- 355 (697)
++.+|||+|||+|..+..+++... ...|+++|.++.+++.++++ ++.+.+.+.|+..++ ++.++||.|++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 347999999999999999998742 25799999999999887654 556667777877654 3467899999532
Q ss_pred ---cc-c------ccccc----------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 356 ---CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 356 ---~l-l------h~~~d----------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. + .|... ...+|.++.++|||||++++++-...
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 11 1 11111 13689999999999999999986443
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=99.67 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++++. ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999863 346799999999999888754 44 35566666532 3455689999997211
Q ss_pred c------------cccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 V------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 l------------h~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ++.+ ....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 114578899999999999998765
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=105.37 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEE--EeecccCCCC--CCCCccEEEec-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHCA- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~~~da~~LPf--pd~sFDlV~~~- 354 (697)
+.+|||+|||+|..+..+++.. ....++++|.++.+++.++++ |+.+.+ ..++....++ ++++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4799999999999999998863 246799999999999877643 555333 4455544443 56789999952
Q ss_pred ---c-cccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 355 ---R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 ---~-~llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. ..++..++ ...+|.++.++|||||++++++-....
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 11222222 246899999999999999999876543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-08 Score=94.26 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||+|||.|.+...|++.+++ ..++|+|.|+..++.|+ .++.+ +.|.++|...-.+..+.||+|+--..
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 3459999999999999999999865 34899999999998775 33554 77888998877788889999985443
Q ss_pred c--cccccc-----HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 G--VDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 l--lh~~~d-----~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ +...++ +...+..+.+.|+|||+|+|..-+.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1 111111 1347888999999999999987653
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=98.20 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccC-CCCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-LPfpd~sFDlV 351 (697)
.+.+||+||||.|..+..++++. ...+|+++|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998762 3457999999999999988641 234555666544 23346789999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... -++.+. ...+++.+.+.|+|||.+++....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98643 333222 146789999999999999986543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=101.02 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.......|+++|.++.+++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 37999999999999999987632223589999999999888753 43 355666776665555578999998754 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .....+.+.|+|||.+++...
T Consensus 160 ~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred H------HhHHHHHHhcCCCCEEEEEeC
Confidence 2 233457789999999988653
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=94.98 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=80.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCcEEEeecccCCCCC--
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 344 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e-----------------rgl~~~~~~~da~~LPfp-- 344 (697)
..+||+.|||.|.-+.+|+++|+. |+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 479999999999999999999854 8999999999988754 234667888888888642
Q ss_pred -CCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005432 345 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+.||+|+=..++++..++. .+..+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 25899998777756655444 5799999999999999887765
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=105.24 Aligned_cols=107 Identities=22% Similarity=0.161 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC----CCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP----fpd~sFDlV~~ 353 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+..+|+..++ +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 347999999999999999987632345799999999999877643 44 3567777877766 45679999996
Q ss_pred c----c-cccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 354 A----R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 354 ~----~-~llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
. . ..++..++ ...+|.++.++|||||+++.++-...
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 3 1 11222222 24689999999999999999986543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.63 E-value=8e-08 Score=104.29 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCcEEEeecccC------C
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ------L 341 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~------L 341 (697)
...+|||+|||.|.-+.-....+ +..++|+|++...++.|++|. ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 45899999999888666665554 567999999999999998774 233445554432 2
Q ss_pred CCCCCCccEEEeccccccccccH---HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 342 PYPSLSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 342 Pfpd~sFDlV~~~~~llh~~~d~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.....||+|-|-+++++..... ..+|..+...|+|||+|+.+.|..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 22235999999999955444444 358999999999999999999843
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=97.02 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..++... ....++++|+++.+++.|++.. .++.+...|... ++++++||+|+++.-..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4689999999999999998874 3467999999999999887641 245566566532 33457999999964311
Q ss_pred cc------c-------------------ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~------~-------------------~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.. . .....++.++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 0 112457888889999999999954
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=93.45 Aligned_cols=142 Identities=21% Similarity=0.336 Sum_probs=93.3
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCcEE--EeecccC--CCC------CCCCccEE
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMI--GSFASKQ--LPY------PSLSFDML 351 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~--~~~da~~--LPf------pd~sFDlV 351 (697)
+|||||||||..+.+++++ ++.....+.|..+..+. ...+.+++... ..+|+.. .|. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999987 45677888898877652 22333332111 1223333 333 25699999
Q ss_pred EeccccccccccH--HHHHHHHHHhccCCeEEEEEeCCCCh-----------hhhhhhHH---hhhhhhhhhhhhhccce
Q 005432 352 HCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP-----------QAFLRNKE---NQKRWNFVRDFVENLCW 415 (697)
Q Consensus 352 ~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~-----------~~~lr~~e---~~~~W~~l~~la~~~~w 415 (697)
+|.++ +|..+-. +.+++.+.++|+|||.|++-.|.... ..+++... ...+.+.+..++.+.++
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99998 7765433 57999999999999999998875421 11222211 12233667788888888
Q ss_pred EEeeec-----CceEEEEe
Q 005432 416 ELVSQQ-----DETVVWKK 429 (697)
Q Consensus 416 ~ll~~~-----~~~~IwqK 429 (697)
++.... +...||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 776542 24566664
|
The function of this family is unknown. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=91.54 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+...|+..+++++.+||.|+++.- ++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3789999999999999999883 46999999999999987763 2466788899999888878999998854 443
Q ss_pred cccHHHHHHHHHHh--ccCCeEEEEEe
Q 005432 361 DQKDGILLLEVDRV--LKPGGYFVWTS 385 (697)
Q Consensus 361 ~~d~~~~L~El~Rv--LKPGG~Lvis~ 385 (697)
. ...+..+... +.++|.+++..
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 2333333332 45888888864
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=103.53 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEe----
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC---- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~---- 353 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+. +.+.+.|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 347999999999999988887522234799999999999877643 543 566777777665 5578999995
Q ss_pred cccc-cc------cccc----------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 354 ARCG-VD------WDQK----------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ~~~l-lh------~~~d----------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+... +. |... ...+|.++.++|||||++++++-....
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2211 10 1111 135899999999999999999876543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6e-07 Score=99.78 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=72.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCC-CCCccEEEecccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfp-d~sFDlV~~~~~llh 359 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.++.+.+.|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999888652 346799999999999988754 45566777776443332 458999999754211
Q ss_pred cc--------------------cc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 360 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~--------------------~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ++ ...++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 00 01 12567777889999999887654
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=96.63 Aligned_cols=111 Identities=18% Similarity=0.148 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 335 (697)
......+.+.+.+.++ .+|||||||+|.+++.|+........|+++|..+..++.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4455566666666655 8999999999999999988643445789999999999888765 44 566777
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 336 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|....--....||.|++..+ .. . .-..+.+.||+||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~---~---ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VP---E---IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BS---S-----HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cc---h---HHHHHHHhcCCCcEEEEEEc
Confidence 776544334568999999876 32 1 12346777999999998544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=96.85 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=73.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc-
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l- 357 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999998863 346799999999999888754 343 5666666543 3455589999997211
Q ss_pred -----------ccccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 -----------lh~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11111 224678899999999999998765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-07 Score=95.39 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~sFDlV~~~~ 355 (697)
..+|||+|||+|..+..++++- ....++++|+.+.+.+.|++. ++ .+.+.+.|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5899999999999999999883 347899999999999998764 11 3456667766654 3445799999985
Q ss_pred cccccc-----------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~-----------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-.+.-. -+.+..++-..++|||||++.+.-+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 422211 12346788889999999999998764
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=102.31 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEEec--
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA-- 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~~~-- 354 (697)
++.+|||+|||+|..+.++++.......|+++|.++.+++.++++ |+. +.+...|+..++ +.+++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 347899999999999999987632345799999999999887644 543 456777877776 556789999963
Q ss_pred --cc-cccccc----------------cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 355 --RC-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 --~~-llh~~~----------------d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.. .+...+ ...++|.++.+.|||||++++++-....
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 11 111111 1135799999999999999999876543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-07 Score=92.20 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
...|-|+|||.+.++..+.+. ..|.-.|.-.. +..+..+|+.++|.++++.|+|++..++ +..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSL--MGTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhh--hCCC
Confidence 468999999999999776432 34666676431 2235667999999999999999987553 4577
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC
Q 005432 364 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
...++.|..|+|||||.|.|.+..... ..-+.+....+.+++++..+..
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred cHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEeccc
Confidence 889999999999999999999874321 1123344556788999887643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=98.15 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=73.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+|||+|||+|.++..++... ....++++|+|+.+++.|++. ++ .+.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 689999999999999998763 446799999999999888754 43 35666666533 23456899999973211
Q ss_pred ------------cccc------------cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 ------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 ------------h~~~------------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++.+ ....++.++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0111 014678999999999999998644
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.3e-07 Score=94.91 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccC-CCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
.+.+|||||||+|.++..+++.. +..+++++|+++++++.|++.. .++.+..+|+.. +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999998763 4578999999999999998752 234556666533 222236899999863
Q ss_pred cc-ccccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CG-VDWDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~l-lh~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ..... ....+++++.++|+|||.+++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 10 11111 125799999999999999999654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-07 Score=95.31 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||+|||+|.++..++.+. ...+++++|+++.|++.++++...+.+.+.|+..+.. +.+||+|+++....+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3689999999999998887752 2357999999999999998875567777788776653 4689999998774442111
Q ss_pred -------------------HHHHHHHHHHhccCCeEEEEE
Q 005432 364 -------------------DGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 364 -------------------~~~~L~El~RvLKPGG~Lvis 384 (697)
...++.....+|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 134667788999999977665
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.1e-07 Score=93.91 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecc--
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR-- 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~-- 355 (697)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+...|+..++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 347899999999999999887632234799999999999877643 44 34566677766665566799999631
Q ss_pred --c-ccc--------ccc--------cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 356 --C-GVD--------WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 356 --~-llh--------~~~--------d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. .+. +.+ ....+|.++.+.|||||+++.++-....
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 011 110 1134899999999999999999865443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-07 Score=97.46 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CCCcEEEeecccC-CCCCCCCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl~~~~~~~da~~-LPfpd~sFD 349 (697)
.+.+||+||||+|..+..++++. ....|+.+|+++++++.|++. ...+.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45899999999999998888763 456799999999999999861 1244555566554 334456899
Q ss_pred EEEeccccccccc---c--HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 350 MLHCARCGVDWDQ---K--DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 350 lV~~~~~llh~~~---d--~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+|++... -.... . ...+++.+++.|+|||.+++....
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9998742 11110 0 145899999999999999987543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=89.01 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 335 (697)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..+...+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 3344556666666555 899999999999999999873 3789999999999888764 44 566677
Q ss_pred ecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 336 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|...---+...||.|+...+ ..-. | ..+...|||||.+++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaa-a~~v--P----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAA-APEV--P----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeec-cCCC--C----HHHHHhcccCCEEEEEEc
Confidence 775443233478999999876 3222 2 235667999999998544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-08 Score=84.20 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=59.5
Q ss_pred EecccCchhhhhhhhcc-CCCeEEEEeecCCCCCchhhHhccCccc---ccccccccCCCCCCccccccccCccccccCC
Q 005432 550 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 550 mDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~~~l~~i~~RGlig---~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
||+|||.|-+++.|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.+|.-+.+||+|++..+|...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 79999999999999985 33344443332 3444444433211 2222233444435999999999998865
Q ss_pred CCCCCcchhhhhhcccccCCcEEEE
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
.....++-|+-|+|||||+++|
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 2456899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-07 Score=91.24 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||+|.|.++..++++. +..+++..|. +..++.+++ ...+.+..+|.. -++|. +|+++..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 45789999999999999999874 5678899998 777888777 556778877876 66766 999999999777764
Q ss_pred cH-HHHHHHHHHhccCC--eEEEEEeCCC
Q 005432 363 KD-GILLLEVDRVLKPG--GYFVWTSPLT 388 (697)
Q Consensus 363 d~-~~~L~El~RvLKPG--G~Lvis~p~~ 388 (697)
+. ..+|+.+++.|+|| |.|+|.+...
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 44 57999999999999 9999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=97.96 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
+.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 47899999999999999988632345799999999999877653 44 3566677776653 33 68999997521
Q ss_pred -----cccccc------c----------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 -----GVDWDQ------K----------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 -----llh~~~------d----------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.+...+ . ...+|.++.++|||||.+++++....
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 011001 0 13479999999999999999876543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=92.14 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||+||||+|.++..++++. ...+++.+|+++.+++.|++.. ..+.+...|+.. +....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999999888764 3457999999999999887641 123344444322 122246899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+... ....+. ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8654 222222 24688999999999999999744
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-07 Score=94.71 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=79.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCcEEEeecc------cCCCCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------l~~~~~~~da------~~LPfpd 345 (697)
.++.++|+|||.|.-+...-+.|+ ..++++|+++..++.|++|. .++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 457899999999998777766664 35899999999999998762 2455665653 2356677
Q ss_pred CCccEEEecccccccc-ccH---HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 346 LSFDMLHCARCGVDWD-QKD---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~-~d~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+||+|-|-+| +|+. ... ..+|+.+.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 67999999999 5543 332 458999999999999999988854
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=90.01 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
....|-|+|||-+.++..- ...|...|... ++-.+...|+.++|.+|++.|++++..+ -+..
T Consensus 180 ~~~vIaD~GCGEakiA~~~------~~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE------RHKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc------ccceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 3467999999999987622 12355666532 2344666799999999999999987644 4567
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
+...++.|++|+|||||.++|...-... .+ -..+..-.+.+++.......
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf----~d------v~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRF----SD------VKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhc----cc------HHHHHHHHHHcCCeeeehhh
Confidence 8889999999999999999998874322 11 11134445678887766543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=4e-06 Score=90.38 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-C-CCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-P-YPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-P-fpd~sFDlV 351 (697)
++.+||+||||.|..+..++++ .....++.+|+++.+++.|++.. ..+.+...|+... . .+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4689999999999999999887 34567999999999999988742 2355566665322 1 235689999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++-.. .++.+. ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98643 332221 13689999999999999987654
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-06 Score=83.26 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-CCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-PYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-Pfpd~sFDlV~~~~~ 356 (697)
+..+++|||||+|+.+..++.. .+...++++|-++++++..++. ++ ++.+..+++-.. +-.+ +||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC
Confidence 4589999999999999999843 4667899999999998765432 43 344555554332 2222 7999998876
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
...+.+|..+...|||||.+++.....
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 346689999999999999999987643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-06 Score=97.57 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCcEEEeecccC-CCCCCCCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQ-LPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~-LPfpd~sFD 349 (697)
++++|||||||+|..+..++++. ...+++.+|+++++++.+++.. ..+.+...|+.. +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45799999999999999998763 2368999999999999998721 234556666554 223346899
Q ss_pred EEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 350 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|++... ....+.. ..+++.+.+.|||||.+++....+
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 9999754 3322221 358899999999999999976433
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=88.86 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC--ceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~--~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|++....+.+...|....++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 46999999999999998876421 2457999999999999999776567777778766655 46899999985422111
Q ss_pred -c---------c-HHHHHHHHHHhccCCeE
Q 005432 362 -Q---------K-DGILLLEVDRVLKPGGY 380 (697)
Q Consensus 362 -~---------d-~~~~L~El~RvLKPGG~ 380 (697)
. . ...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 1 23578888887777776
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=89.77 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...++||.|||.|..|..++-.- .-.|..+|+.+..++.|++.-.. ..+.+...+.+..+.++||+|++--|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46799999999999999886653 45689999999999999854222 334555666665556799999999997
Q ss_pred ccccccH-HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHh---hhhhhhhhhhhhccceEEeeec
Q 005432 358 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 358 lh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~---~~~W~~l~~la~~~~w~ll~~~ 421 (697)
.|..++. -.+|+.+...|+|||.+++-+.........-+.+. ...-+.+..+.+..+.+++.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 7766433 57999999999999999997755433211112211 1223456666777777777654
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=87.55 Aligned_cols=100 Identities=29% Similarity=0.426 Sum_probs=73.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccC-CC--CCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~-LP--fpd~sFDlV~~~~~ 356 (697)
..+||||||.|.++..+|... +...+.|+|+....+..+.+ .++ ++.+.++|+.. ++ ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 379999999999999999875 56789999999988866643 355 56677777766 32 56789999998876
Q ss_pred cccccccH--------HHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.|.... ..+|.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5554221 3699999999999999999764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=89.02 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccC-CCC-CCCCccEEEeccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~-LPf-pd~sFDlV~~~~~llh~ 360 (697)
.+|||+|||+|.++..+++.. ....++++|.++.+++.|++.- ....+.+.|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999988752 3357899999999999887541 123556566543 221 13579999998532210
Q ss_pred ------c---------------cc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 361 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ------~---------------~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .+ ...++..+.++|||||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 12567778899999999998765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-06 Score=87.03 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-----CCCCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-----fpd~sFDlV 351 (697)
.++|||||||+|..+..++..-.....++++|.++++++.|++. ++ .+.+..+++... + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 47999999999998888876532345799999999999888754 44 345555665432 1 124689999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++-.- .+....++.++.++|||||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87532 23345789999999999999887653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=89.76 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=81.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCC-CcEEEeecccCCC---CCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl-~~~~~~~da~~LP---fpd~sFDlV~~~~~ 356 (697)
..+||||||.|.+...+|++. +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 456899999998776554 45688 8888888876543 45669999999987
Q ss_pred cccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-.|.... ..+|+.+.++|+|||.|.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6776333 36899999999999999997643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=86.21 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-cCC----------------CcEEEeecccCCCCCC-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGL----------------PAMIGSFASKQLPYPS- 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e-rgl----------------~~~~~~~da~~LPfpd- 345 (697)
..+||..|||.|.-...|+++| ..|+|+|+|+..++.+.+ ++. .+.+.++|.-.++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3689999999999999999997 468999999999998843 332 2345566766665433
Q ss_pred CCccEEEecccccccccc-HHHHHHHHHHhccCCeEEEEE
Q 005432 346 LSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d-~~~~L~El~RvLKPGG~Lvis 384 (697)
++||+|+=..++....++ ..+..+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 479999976654444433 467999999999999994443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=84.16 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCch----HHHHHhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 005432 283 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 329 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~--~--g~~~~sV~gvD~S~~ml~~A~er--------gl----------------- 329 (697)
..-+|+-.||++|. ++..|.+ . ......|.|+|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999995 3444444 1 12257899999999999999742 11
Q ss_pred --------CcEEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEe
Q 005432 330 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 --------~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.|...+....+.+.+.||+|+|-++++++.+.. .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13455556555334557899999999977766443 579999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.9e-06 Score=71.56 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=71.9
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---cEEEeecccC--CCCCC-CCccEEEeccccc
Q 005432 287 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 358 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---~~~~~~da~~--LPfpd-~sFDlV~~~~~ll 358 (697)
++|+|||+|... .+.........++++|.+..++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333321111357789999999987554431 1 3455556554 78877 589999 666646
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++.. ....+.++.++|+|+|.+++......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 6555 67899999999999999999887654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=83.57 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=85.2
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 005432 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 339 (697)
Q Consensus 266 ~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 339 (697)
.|...+.+.++ .+|||.|.|+|.++.+|+..-....+++.+|..++..+.|++. ++ .+.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45555555555 8999999999999999996544557899999999999999865 22 2455556666
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 340 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 340 ~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
..-+++ .||+|+.- .++|-.++..++.+|||||.+++-.|+.+
T Consensus 157 ~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 157 EGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 665655 89999854 26788999999999999999999888653
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=91.26 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..+++.+ ..++++|.|+.|++.|++. ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4799999999999999999874 5799999999999888753 33 46677777643 34556789999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
--.. . ....+..+.+ ++|++.++++..
T Consensus 375 PPr~---g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 375 PPRA---G-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCc---C-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 4311 1 2345555555 699999999874
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=83.73 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcE-EEeecccCCC-----CCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQLP-----YPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~-~~~~da~~LP-----fpd~sFDlV~~~~~ 356 (697)
...+|||+|||||.|+..+++.| ...++++|.++.|+.........+. +...+...+. ..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 45789999999999999999986 3569999999998876554443332 2222333222 12236777776644
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..|..+.+.|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 358889999999 7776654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.5e-06 Score=86.33 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=68.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+|||||||+|..+..++... ....|+++|+|+..++.|++. ++ ..+......-+.--.++||+|+|+--.+.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 79999999999999999885 446899999999999888654 43 2222222211221224899999985322211
Q ss_pred -----c-----cH--------------HHHHHHHHHhccCCeEEEEEeC
Q 005432 362 -----Q-----KD--------------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 -----~-----d~--------------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ +| ..++.++.+.|+|||.+++..-
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 0 11 2568889999999999998654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.4e-06 Score=98.60 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-CCCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-Pfpd~sFDlV~~~~ 355 (697)
+.+|||+|||+|.++..++..|. .+|+++|.|+.+++.|++. ++ .+.+..+|+... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999998753 3699999999999988754 33 356666675432 11146899999964
Q ss_pred ccccc----------cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDW----------DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~----------~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.+.- ..+...++..+.++|+|||.++++.-
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 31111 12234678889999999999988754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=84.18 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCch----HHHHHhhcC---CceeEEEEecCCHHHHHHHHHc--------CC-------------------
Q 005432 284 VRTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL------------------- 329 (697)
Q Consensus 284 ~~~VLDIGCGtG~----~a~~La~~g---~~~~sV~gvD~S~~ml~~A~er--------gl------------------- 329 (697)
.-+|+..||.||. ++..+.+.. .....|+|+|+|+.+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999996 344444421 1146799999999999988752 11
Q ss_pred ---------CcEEEeecccCCCCC-CCCccEEEecccccccccc-HHHHHHHHHHhccCCeEEEEEe
Q 005432 330 ---------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 330 ---------~~~~~~~da~~LPfp-d~sFDlV~~~~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+.|...+....+++ .+.||+|+|.++++++.+. ..+++..+++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 112444455444443 5789999999997776533 3679999999999999988854
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=83.28 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------C-----------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------P----------------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~----------------------- 330 (697)
.+..+|||||-.|.++..+++. +....+.|+|+++..++.|++..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999987 334569999999999999986420 0
Q ss_pred --------cE-----EEeecccCCCCCCCCccEEEeccc----cccccccH-HHHHHHHHHhccCCeEEEEE
Q 005432 331 --------AM-----IGSFASKQLPYPSLSFDMLHCARC----GVDWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 331 --------~~-----~~~~da~~LPfpd~sFDlV~~~~~----llh~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
+. ++.-..+-+.+....||+|+|..+ -+.|.++. ..++..+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 000001112234567999999754 23344443 57999999999999999984
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=89.39 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCCC----CCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP----YPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~LP----fpd~sFDlV~ 352 (697)
+.+|||+|||+|.++..++..+ ..+|+++|.++.+++.|++. ++ .+.+..+|+...- -..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999988766554 34799999999999888753 44 3456667765431 1356899999
Q ss_pred ecccccccc--------ccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~--------~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.--.+.-. .+...++....++|+|||.++...-
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 884422111 1123455567899999999997653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=85.13 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+|||||||+|.++..+++++. .++++|+++.|++.++++. .++.+..+|+..+++++-.+|.|+++--
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 37899999999999999999852 6899999999999988753 3567788888888876533688888744
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=83.71 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC-CCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPf-pd~sFDlV~~~~~l 357 (697)
+.+|||+|||+|.++..+++.+ ..|+++|.++.+++.|++. ++ ++.+.++|+..+.. ..+.||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3789999999999999999874 4699999999999887643 44 46777788766542 34579999987431
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. .....+.++...++|++.++++.-..
T Consensus 251 ---~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 ---R-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred ---C-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 1 11223334445578888888876543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=75.92 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-----CCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP-----fpd~sFDlV~~~~~l 357 (697)
.+.-|||+|.|||.+|..++++|+...++++++.+++.+....++...+.+..+|+..+. +.+..||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 346899999999999999999999999999999999999988888777767777776664 677889999998665
Q ss_pred ccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.+.... -++|+++...|.+||.++--...+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 5544333 468999999999999999776654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-06 Score=81.14 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=63.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
-.+|||+|||.|.|+..|.+ .+. .|+-+|.. ..+.. +-.....++-.++.. -+++||+|.|..+|.+..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~--~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~-~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK--RGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPF-PDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH--TTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHC-HSSSEEEEEEESSGGGSS-
T ss_pred CCEEEEEcCCCCHHHHHHHH--hCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhc-cccchhhHhhHHHHhhcc-
Confidence 45999999999999999976 333 44444443 22222 222222221112211 238999999999998764
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 -----d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 -----DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3668999999999999999998653
|
... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=81.55 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 338 (697)
...+.+.+.+.... ..+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+..+|+
T Consensus 16 ~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~ 84 (258)
T PRK14896 16 RVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEecc
Confidence 44455555554333 3789999999999999999884 46899999999999987653 2466778888
Q ss_pred cCCCCCCCCccEEEeccccccc
Q 005432 339 KQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 339 ~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..++++ .||.|+++.. ++.
T Consensus 85 ~~~~~~--~~d~Vv~NlP-y~i 103 (258)
T PRK14896 85 LKVDLP--EFNKVVSNLP-YQI 103 (258)
T ss_pred ccCCch--hceEEEEcCC-ccc
Confidence 888776 4899999865 443
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.4e-06 Score=86.65 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
...+||+|||.|..+..- +...+.+.|.+...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999764321 334688999999988888876643 45557999999999999999999885554422
Q ss_pred --HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 364 --DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 364 --~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...+++|+.|+|||||...+....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 257999999999999998876653
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.9e-05 Score=74.60 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C-----CCcEEEeecccC-C--C-CCCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G-----LPAMIGSFASKQ-L--P-YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---g-----l~~~~~~~da~~-L--P-fpd~sFDl 350 (697)
...+|||+|||+|..+..++... ....|+..|..+ .++..+.. + ..+.+..++-.. . . ...++||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45899999999999998888872 346788999988 66554432 1 122333322111 1 0 23468999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+++.| ++.....+.++.-+.++|+|+|.++++...
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999999 444566678999999999999998887663
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.4e-05 Score=85.02 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..+++.. ..|+++|.++.+++.|++. ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4789999999999999998863 4689999999999888753 33 45677777654 23445689999976
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-... .-...++..+.+ ++|++.++++..
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4311 112456666554 899998888753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=73.82 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++.++ ..+++++|.++..++.+++. ++ ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 3689999999999998766664 35799999999998877643 33 35566666543 2223457999998855
Q ss_pred ccccccHHHHHHHHHH--hccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~R--vLKPGG~Lvis~p 386 (697)
+.. .-...++..+.. +|+|+|.++++..
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 221 122345555554 4899999998865
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=77.53 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHH---------cCCC---------------
Q 005432 283 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLE---------RGLP--------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~----~a~~La~~g~----~~~sV~gvD~S~~ml~~A~e---------rgl~--------------- 330 (697)
..-+|.-.||+||. ++..|.+... ....|.|.|++...++.|++ ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999995 4555555542 25789999999999998873 1221
Q ss_pred ----------cEEEeecccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEe
Q 005432 331 ----------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 331 ----------~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1233333333332446799999999977766443 579999999999999999954
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.9e-05 Score=77.04 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=86.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc--ccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|+|+|||+|.++.+|... .+- ..|+-+|.. ..+. .+-+.|+ +-+++.-.+.++. ..+||+|-|.. +
T Consensus 47 ~~VLDiGcGtG~~al~la~~-~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~ 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA-RPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c
Confidence 46999999999988877642 221 245555553 3332 2223444 3444444445554 57999999843 1
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEee-ec-cC--CCccEEEEEcc
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE-IE-SN--SDERLLICQKP 690 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~-~e-~~--~~~~~li~~K~ 690 (697)
..+..++-++-|+|||||.+++-+......++.++++.+-|++..+- .| +| ++..+.|.+|+
T Consensus 122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 23557888999999999999999888888899999999999965442 11 11 23446666664
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=76.60 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCcc---EEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFD---lV~~~~~ 356 (697)
..+|||||||+|.++..|++++ ..++++|.++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 4799999999999999999885 24899999999999887652 3466777888888775 466 7777644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.4e-05 Score=76.15 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-----CCCCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-----fpd~sFDlV 351 (697)
+++|||||+++|..+.++++.-.....++.+|.+++..+.|++. |+ .+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999999999997633456899999999999888642 43 34555555533 12 123589999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. ..+....+..+.++|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 96643 344567889999999999999997653
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=78.03 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccC-CC-C----CCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-Y----PSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-LP-f----pd~sFDl 350 (697)
++.+|||||+|+|..+..++..-.....++.+|.+++..+.|++. |+. +.+..+++.. |+ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 358999999999999999987422234689999999999888643 543 4555555433 22 1 2368999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.-.- ..+...++..+.++|+|||.+++...
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 986532 23346789999999999999998654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.7e-05 Score=78.08 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 005432 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 339 (697)
Q Consensus 266 ~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 339 (697)
.|...+.+.++ .+|||.|.|+|.++..|+..-.+...|..+|.+++..+.|++. ++ .+.+...|..
T Consensus 31 ~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 31 YILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 45566666666 9999999999999999997644556899999999999888754 44 3566666765
Q ss_pred CCCCC---CCCccEEEeccccccccccHHHHHHHHHHhc-cCCeEEEEEeCCC
Q 005432 340 QLPYP---SLSFDMLHCARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 388 (697)
Q Consensus 340 ~LPfp---d~sFDlV~~~~~llh~~~d~~~~L~El~RvL-KPGG~Lvis~p~~ 388 (697)
.-.|+ ++.||.|+.- .++|-.++..+.++| ||||++++-.|+.
T Consensus 103 ~~g~~~~~~~~~DavfLD------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD------LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp CG--STT-TTSEEEEEEE------SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccccccCcccEEEEe------CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 44442 3679999754 256668999999999 9999999988864
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.5e-05 Score=86.84 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CcEEEeecccCCC--CCCCCccEEEec
Q 005432 282 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLP--YPSLSFDMLHCA 354 (697)
Q Consensus 282 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~LP--fpd~sFDlV~~~ 354 (697)
.....+||||||.|.++..++... +...+.|+|.+...+..+. +.++ ++.+...++..+. ++++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 346789999999999999999885 5578999999988776554 3354 3334444543332 788999999999
Q ss_pred cccccccccH--------HHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+. -.|.... ..+|..+.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 87 6664322 3689999999999999998754
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.5e-05 Score=80.17 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=61.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCc---ccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-+|||+|||.|.++..|.+.+..|..+-+.| ..+.. +-++|+ -....|..+ + .++.+||+|-|..+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~----~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNP----MSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 4799999999999999987444444443322 22222 233444 223344432 2 235789999998877
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
... +.-....++-+|-|.|+|||++++
T Consensus 106 ~~~----~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL----EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC----CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 543 223456799999999999999654
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=69.88 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCEEEEeCCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC-CCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~-~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfp-d~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|. ++..|++.| ..|+++|+++..++.+++.++.+... |..+-.+. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~d--Dlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVD--DLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEEC--cCCCCCHHHHhcCCEEEEeCC----C
Confidence 3789999999996 888888876 46899999999999999887655443 44433322 356999998876 2
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++....+.++.+.+ |.-++|..
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEc
Confidence 33334555555544 34455543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.3e-05 Score=83.36 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc-c-cccccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl-i-g~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+|||+|||.|.++.+|.+.+. .|+-+|.. .-+. .+-+.|+ + -...|.-+ .+ .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhh
Confidence 799999999999999987433 33444443 3232 2334565 1 11122222 11 268899999988876
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE---cCH-----------HHHHHHHHHHhhcCceeEEe
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~ 674 (697)
... +-.+..++-+|-|+|+|||++++- ++. -.-++++++.+. |++...
T Consensus 196 ~l~----~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 196 FLN----RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hCC----HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 543 235668999999999999996552 111 113455555554 888776
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.8e-05 Score=86.42 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=60.8
Q ss_pred eeEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCCCchhh----HhccCccc----ccccccc-cCCCCCCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPM----ILDRGFVG----VLHDWCE-AFPTYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~~~l~~----i~~RGlig----~~~~~~e-~f~typrtyDl~H~ 615 (697)
-..|||+|||.|+++..|.+. +..|..+.+.| .++.. +-++|+.. +..|..+ +|+ +.+||+|.+
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s 192 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWS 192 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEE
Confidence 457999999999999999862 12333333322 33332 22345421 1223322 333 389999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
...+.++. +...+|-||-|+|||||.++|.+
T Consensus 193 ~~~~~h~~------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMP------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77766554 23478999999999999999853
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=78.36 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchhh----HhccCcc--cccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGli--g~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+.+. .|+-+|-. ..+.. +-+.|+- ....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999987433 34444443 33332 2234541 2222322 222 35689999998887
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
.... .-....++-++.|+|+|||++++
T Consensus 105 ~~~~----~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFLQ----AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence 6543 23456899999999999999554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.3e-05 Score=91.80 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-----------------CcEEEeecccCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-----------------PAMIGSFASKQLP 342 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-----------------~~~~~~~da~~LP 342 (697)
+.+|||+|||+|.++..+++.. ....++++|+|+.+++.|++. ++ ++.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999998874 335799999999999888543 11 245666665433
Q ss_pred CCC--CCccEEEecccccccc---------------------------------ccH----HHHHHHHHHhccCCeEEEE
Q 005432 343 YPS--LSFDMLHCARCGVDWD---------------------------------QKD----GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 343 fpd--~sFDlV~~~~~llh~~---------------------------------~d~----~~~L~El~RvLKPGG~Lvi 383 (697)
+.+ ..||+|+++--.+... +|. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999974321100 111 3577888899999999988
Q ss_pred EeC
Q 005432 384 TSP 386 (697)
Q Consensus 384 s~p 386 (697)
..-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00024 Score=77.10 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=63.8
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 005432 259 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 331 (697)
Q Consensus 259 ~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~ 331 (697)
....|+..+++++..............+|||||||+|.....|+.+. ...+++++|+++.+++.|++. ++. +
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35778888888876432111222345789999999998888777653 346799999999999988743 232 2
Q ss_pred EEE-eecccCCC----CCCCCccEEEeccc
Q 005432 332 MIG-SFASKQLP----YPSLSFDMLHCARC 356 (697)
Q Consensus 332 ~~~-~~da~~LP----fpd~sFDlV~~~~~ 356 (697)
.+. +.+...+. .+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 222 12222221 24678999999966
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=73.65 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EEe-ecccC-CC-CCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~-~da~~-LP-fpd~sFDlV~~ 353 (697)
++.+|||||.+.|..+.+|+..-.....++.+|.++++.+.|++. |+... ... +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999999999987633256799999999999999754 44332 222 23221 11 45689999985
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.. ..+...++..+.++|+|||.+++...
T Consensus 139 Dad----K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 DAD----KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eCC----hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 432 34446899999999999999998754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.7e-05 Score=76.55 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=57.8
Q ss_pred eEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHh----ccCc--ccccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~----~RGl--ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.- ..|..+-+.| +.+..+- +.++ +-+++.=.+.++.-+.+||+|++..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 479999999999999887521 1233322221 3332222 2233 2222211222331137999999877
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.... ....+|-|+-|+|+|||++++.+
T Consensus 123 ~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 123 GLRNVP------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ccccCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 665433 23468899999999999999865
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=83.27 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHH----HcC--CCcEEEeecccCCCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTL----ERG--LPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~----erg--l~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
...|||||||+|.+....++.+ .....|++++-++.++...+ +.+ -.+.+...+++.+..+. ..|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4679999999999976665542 13568999999887664432 333 35778888999988775 89999997
Q ss_pred ccccccc--ccHHHHHHHHHHhccCCeEEE
Q 005432 355 RCGVDWD--QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 355 ~~llh~~--~d~~~~L~El~RvLKPGG~Lv 382 (697)
-.. .+. +--...|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 222 222457889999999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00028 Score=74.04 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEe-
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGS- 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~- 335 (697)
+.+.+.+.+.+..... .....+||+|||+|..+..++.. .....++++|.|+.++..|.+. ++..++.+
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555566555543222 13358999999999999998765 4567899999999999877654 33322221
Q ss_pred -ecc-----cCCCCCCCCccEEEeccccccccccH--------------------------HHHHHHHHHhccCCeEEEE
Q 005432 336 -FAS-----KQLPYPSLSFDMLHCARCGVDWDQKD--------------------------GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 336 -~da-----~~LPfpd~sFDlV~~~~~llh~~~d~--------------------------~~~L~El~RvLKPGG~Lvi 383 (697)
.++ ...+...+.+|+++|+--.+. .+|. -.++.-+.|.|+|||.+.+
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 111 223355789999999854221 1111 1245567899999999999
Q ss_pred EeCC
Q 005432 384 TSPL 387 (697)
Q Consensus 384 s~p~ 387 (697)
....
T Consensus 284 e~~~ 287 (328)
T KOG2904|consen 284 ELVE 287 (328)
T ss_pred Eecc
Confidence 8764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=77.51 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||.||+|.|..+..++++. ...+++.+|+++.+++.|++.. ..+.+...|+.. +.-.+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45799999999999999888763 3467999999999999998642 233455555433 233457899999
Q ss_pred ecccccccccc------HHHHHH-HHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d------~~~~L~-El~RvLKPGG~Lvis~p 386 (697)
+-.. -.+... ...+++ .+.+.|+|||.+++..-
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8632 211100 135777 89999999999988643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=79.22 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC-CCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP-fpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++..+ ..++++|.++.+++.|++. ++ ++.+..+++.... -..++||+|++.--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3689999999999999999764 4699999999999887753 34 4567777765432 122469999987441
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..-...++..+. .++|++.++++..
T Consensus 311 ---~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 ---RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999998864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.3e-05 Score=83.35 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...++|+|||.|....+++.. ....++++|.++..+..+... ++ ...+...+....||++++||.+.+..+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~- 187 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV- 187 (364)
T ss_pred cccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee-
Confidence 347999999999999998766 345688999999888666543 22 223466788889999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.++...+++|++|+++|||+++..+..
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 566788999999999999999999986553
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=74.18 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=93.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHHHc----C-------------------------CC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTLER----G-------------------------LP 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml---~~A~er----g-------------------------l~ 330 (697)
+..+||==|||.|.++..++.+|+ .+.+.|.|--|+ ++.... + +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 456899999999999999999975 479999999996 233221 0 00
Q ss_pred -------------cEEEeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhh
Q 005432 331 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 394 (697)
Q Consensus 331 -------------~~~~~~da~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~l 394 (697)
.....+|...+..++ ++||+|++.+- +.-..+.-..|..|.++|||||+++=..|....-...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 001112222222233 69999998865 6656667789999999999999887777755432211
Q ss_pred --hh-HHhhhhhhhhhhhhhccceEEeeecC
Q 005432 395 --RN-KENQKRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 395 --r~-~e~~~~W~~l~~la~~~~w~ll~~~~ 422 (697)
.+ ...+-.|+++..+++..+|+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 01 11345799999999999999986543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.5e-05 Score=78.21 Aligned_cols=95 Identities=23% Similarity=0.405 Sum_probs=61.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---cc-ccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
+.|||+|||.|+++..+.+....+ +|+-++-. +++..+-+ .|+-+ ++ .|..+ . .+|.+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887631122 22323322 44443333 45522 22 22211 1 2367899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. +...++-++.|+|+|||++++.+
T Consensus 76 ~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIK------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCC------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 877654 24578999999999999999875
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.6e-05 Score=80.96 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=63.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-------c--ccccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-------l--ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|.+.-.+-. +|+-+|-. +-|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988875211111 34444544 5555554442 1 222222234454323799999998
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
..+.... +...+|-||-|+|||||.+++.|
T Consensus 153 ~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7776543 34678999999999999998864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=72.35 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=69.7
Q ss_pred CEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CcEEEeecccCCCCCCCCc
Q 005432 285 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSLSF 348 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~erg---l------------~~~~~~~da~~LPfpd~sF 348 (697)
.+.||||.|+|.++..++.. +.......|+|..++.++.+++.- + ...+.++|....--+.+.|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999998887743 333333489999999998876531 1 2345677777776778899
Q ss_pred cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 349 DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|.|||... ..+..+++...|+|||.+++-.
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 99999854 2346677788899999998854
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.7e-05 Score=71.18 Aligned_cols=98 Identities=26% Similarity=0.391 Sum_probs=59.4
Q ss_pred eEEEecccCchhhhhhhhc--cCCCeEEEEeecCCCCCchhhHhc----cCcccc----cccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLE--KGKSVWVMNVVPTIGTNHLPMILD----RGFVGV----LHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~--~~~~vwvmnv~p~~~~~~l~~i~~----RGlig~----~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++.+|.+ ....|..+=..| ..+..+-+ .+.-.- ..|+ ..-...+..||+|.+.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP----EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 3689999999999999987 433333332211 33332222 333222 2333 2224445569999999
Q ss_pred C-ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 G-LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~-~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. .+..+. +......+|=++-+.|+|||+++|.+
T Consensus 78 ~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLL---PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCC---HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccc---chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 333232 11233456788999999999999975
|
... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=78.92 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCc--EEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPA--MIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~--~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++...++.| ...|+++|.|.-+ +.|. ..+... .+..+..+.+-+|-++.|+|++...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45899999999999999999997 4578999988654 5444 344433 3344445555455679999999754
Q ss_pred ccccc--ccHHHHHHHHHHhccCCeEEE
Q 005432 357 GVDWD--QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~--~d~~~~L~El~RvLKPGG~Lv 382 (697)
.+-.. .....+|-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22211 223556777789999999876
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=77.24 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEe
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~ 335 (697)
...+.+.+.+...+ ..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + .++.+..
T Consensus 23 ~i~~~Iv~~~~~~~--------~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--------TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 34445555544333 3789999999999999999874 4589999999999988764 2 2466777
Q ss_pred ecccCCCCCCCCccEEEecccccccc
Q 005432 336 FASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.|+...+++ .||+|+++.- ++..
T Consensus 92 ~Dal~~~~~--~~d~VvaNlP-Y~Is 114 (294)
T PTZ00338 92 GDALKTEFP--YFDVCVANVP-YQIS 114 (294)
T ss_pred CCHhhhccc--ccCEEEecCC-cccC
Confidence 787666553 6899998754 4443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00024 Score=73.07 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C---CCcEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G---LPAMI 333 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g---l~~~~ 333 (697)
+.+.+.+++.-..++ ..+.+|||...|-|.++...+++|. ..|..++-++..++.|.-. + ..+.+
T Consensus 118 dP~~Dt~~Kv~~V~~------~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKV------KRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheecc------ccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 455556655544333 2568999999999999999999974 3577788888888877632 2 13445
Q ss_pred EeecccCC--CCCCCCccEEEecccccccccc--HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhh
Q 005432 334 GSFASKQL--PYPSLSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 409 (697)
Q Consensus 334 ~~~da~~L--Pfpd~sFDlV~~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~l 409 (697)
..+|+.++ .|+|.+||+|+----.+..... -+.+.+|++|+|||||.++--+-.+..... - ......+.+.
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr--G---~d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR--G---LDLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc--c---CChhHHHHHH
Confidence 55665554 3889999999854322222211 257899999999999999876654443211 1 1222334444
Q ss_pred hhccceEEee
Q 005432 410 VENLCWELVS 419 (697)
Q Consensus 410 a~~~~w~ll~ 419 (697)
..+.+|+.+.
T Consensus 265 Lr~vGF~~v~ 274 (287)
T COG2521 265 LRRVGFEVVK 274 (287)
T ss_pred HHhcCceeee
Confidence 5566776543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.8e-05 Score=77.30 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=61.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cc-ccccccccCCCCCCccccccccCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig-~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..+|||+|||.|.++..|.+....|.. .|-. ..+..+-+++- +. +..|. +.++..+.+||+|-++..+. |
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~-----~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTA-----LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEE-----EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 467999999999999988763333333 3332 44444444432 11 12232 34444447999999876654 2
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. -+...+|-||-|+|+|||++++.
T Consensus 116 ~-----~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 C-----GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2 24567999999999999999986
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=71.54 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=75.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-cc-ccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-ig-~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||.|.++.+|.+.. + .|+-+|-. ..+..+-+ .|+ +- +..|+.+.+ +.+||+|-++-.|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCC
Confidence 459999999999999998732 2 33333332 22222211 222 11 223444432 4689999987665
Q ss_pred ccccCC---------------CCCCCcchhhhhhcccccCCcEEEEEcCHHH-HHHHHHHHhhcCceeEEee
Q 005432 620 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIE 675 (697)
Q Consensus 620 ~~~~~~---------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~ 675 (697)
...... ..++.+..+|-++.|+|+|||.+++-+.... ..++.++++..-|+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 432210 0122356789999999999999998765544 6677777777788887775
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00052 Score=74.60 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEE-
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIG- 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~- 334 (697)
..+.+.+.++.....+ ..|||==||||+++....-. ...++|.|++..|++-|+.. ++. ..+.
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3444455555554444 79999999999998777554 45689999999999888754 222 2233
Q ss_pred eecccCCCCCCCCccEEEeccc-----ccccc--cc-HHHHHHHHHHhccCCeEEEEEeC
Q 005432 335 SFASKQLPYPSLSFDMLHCARC-----GVDWD--QK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~-----llh~~--~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..|+..+|+++++||.|.+-.- ..... +. ..++|..+.++||+||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3499999999999999998532 01111 11 25789999999999999999888
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.3e-05 Score=78.39 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=64.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
..|||+|||.|.++.+|.+. .|- ..|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|++..+|....
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~-~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARR-WPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC--
Confidence 67999999999999999863 121 134444443 666667777742222332 2222 236899999998886543
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+...+|-|+-|+|+|||++++.
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEE
Confidence 2357899999999999999986
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=3.6e-05 Score=80.32 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---ccc-cccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~~-~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+.. +.+ |..+--+..+.+||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4899999999999999987433 34444443 44444333 34422 111 22221112347999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
++.... +...+|-|+-|+|+|||++++-
T Consensus 121 vl~~~~------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVA------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 887554 2347899999999999999874
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00072 Score=76.99 Aligned_cols=108 Identities=22% Similarity=0.350 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEE----
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH---- 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~---- 352 (697)
.+.+|||++||+|.=+.++++.--....++++|+++.-++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 458999999999999999987632335799999999887666543 554 345556666553 2345799999
Q ss_pred eccccc---------ccccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 353 CARCGV---------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 353 ~~~~ll---------h~~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|+.... .|.+. ..++|....+.|||||+|+.++-....
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 663311 11110 035788999999999999999876544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=6e-05 Score=81.77 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=58.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cc---ccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Gl---ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+.|||+|||.|.|+..|++.+ +-.|.-|=|.... .+...+ .+ +. |-+...=-+.+|. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 689999999999999998742 2222222221110 010111 11 10 1111111134454 78999999988876
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+. -+...+|-++-|+|+|||.+|+.
T Consensus 201 H~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HR------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 34567999999999999999985
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00041 Score=69.49 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+++|+|+|||||.++...+-.| ...|+++|+++++++.+++. +..+.+.++|..+. +..||.|+.+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPP 117 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPP 117 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCC
Confidence 45789999999999988887776 35689999999999988754 23577777776665 367899988743
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00052 Score=68.31 Aligned_cols=100 Identities=23% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCcee--------EEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCcc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTM--------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~--------sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFD 349 (697)
...|||--||+|++....+..+.... .+.|.|+++.+++.|++. ++ .+.+.+.|+..+++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 47899999999999866654432222 388999999999887654 33 35577889999998888999
Q ss_pred EEEeccccccc-ccc---H----HHHHHHHHHhccCCeEEEEE
Q 005432 350 MLHCARCGVDW-DQK---D----GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 350 lV~~~~~llh~-~~d---~----~~~L~El~RvLKPGG~Lvis 384 (697)
.|+++-- +-. ... . ..+++++.++|++...++++
T Consensus 109 ~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999843 211 111 1 25789999999994444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.2e-05 Score=74.19 Aligned_cols=114 Identities=11% Similarity=0.230 Sum_probs=71.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc--ccccc-cccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--ig~~~-~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++ -+.|+ |-+++ |.. .++ ...+||+|-+..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~-~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA-RPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc-ccCCccEEEehh-
Confidence 58999999999887766532 111 123333433 322222 22344 22222 222 222 347999998754
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcC-ceeEEee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~~ 675 (697)
+ ..+.+++-++.|+|+|||.+++........++..+.+++| |.....+
T Consensus 118 ~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 118 L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 2 2344678888999999999999988878888888888766 6666554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.46 E-value=4.5e-05 Score=80.95 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=63.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCcccccccccccCCCCCCccccccccCcccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.|||+|||.||++-.+.+. ..+=|.-|.. +++|+.. |-++||-....--+.-|...+-+||-|=+-+.|.+..
T Consensus 65 ~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 65 RVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred EEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 8999999999999999973 3553333332 2255554 4578885544433444444455899988888877652
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+-....++-.++|+|+|||.+++.
T Consensus 142 ----~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 ----RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 244567899999999999999975
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.2e-05 Score=79.25 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=60.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccc-ccccc-ccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWC-EAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~-~~~~~-e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||+|+++..|... .. ..|+-+|-. +.+..+-+|- -+-. ..|.. .+|+ +.+||+|++..++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 46999999999999888642 22 133333333 4444444431 1111 12221 2333 2799999997665
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.+.. ......+|-|+-|+|+|||++++.|-
T Consensus 128 ~h~~----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHLS----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5432 12455789999999999999999753
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00054 Score=71.79 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-----CCCCccE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-----PSLSFDM 350 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-f-----pd~sFDl 350 (697)
.++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.. |+ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 57999999999999999986532346799999999998888643 43 34455554432 22 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.-.- .......+..+.+.|+|||.+++...
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 986532 23345688888999999999887643
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=73.57 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=61.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cccccc----ccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~----~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..+.+.-.+- -+|+-+|.. +.+..+-++ +..... .|.. .++.-+.+||+||+..+|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechh
Confidence 479999999999999887521010 133333433 555555554 111111 1221 122213689999999888
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.... +...++-++-|+|+|||++++.+
T Consensus 98 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7654 34578999999999999999854
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=64.19 Aligned_cols=99 Identities=15% Similarity=0.001 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-CCC-CccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PSL-SFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-f-pd~-sFDlV~~ 353 (697)
..+|||++||+|.++..++.+|. ..++++|.++.+++.+++. +. .+.+...|+.. +. + ... .||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 47899999999999999999974 3689999999998877643 33 24566666633 22 1 122 4788776
Q ss_pred ccccccccccHHHHHHHHH--HhccCCeEEEEEeC
Q 005432 354 ARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p 386 (697)
--- +.. .....++..+. .+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 543 221 22334444443 47899998888654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=65.67 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+..+||||||+|..+..|++.-.......++|+++.+++.. +..+..+..++.|...- ...++.|+++.+.-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 357899999999999999998755566678999999987654 33455544554443221 2337888888764311
Q ss_pred c--------------cc--cc----HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 359 D--------------WD--QK----DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 359 h--------------~~--~d----~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
. |. .+ ..+++..+..+|.|.|.|++.....+.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1 11 11 135677788889999999998765443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=72.49 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=75.0
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCC-C-CCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~t-y-prtyDl~H~ 615 (697)
-.+|||+|||.|.++..|.+. .+- .+|+-+|-. ..+..+-+ -|+ +- +..|..+.++. + +.+||+|-+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 468999999999999988752 111 123333332 33332221 233 11 22233233441 3 478999987
Q ss_pred cCcccccc---CCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005432 616 EGLLSLES---GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 616 ~~~~~~~~---~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
..... |. ....+.....+|-++.|+|+|||++++. +.......+.+....--|.+.+.
T Consensus 118 ~~~~p-~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDP-WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCC-CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 54321 21 0002234567899999999999999996 66777777777777777877643
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0025 Score=67.42 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCCCCCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
++++||=||.|.|..+..++++. .+|+.+|+++.+++.+++-- ..+.+.. .. ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 57999999999999999999984 38999999999999998731 1222221 11 1112368999997
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
-.. ....+.+.++|.|+|||.++...-.+
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 633 23578899999999999999976544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00024 Score=70.59 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=69.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccccccccc-ccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWC-EAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~-e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++... .+- .+|+-.|-. ..+..+-+ .|+-. +.-.+ .....++..||+|.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~-~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQ-FPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 47999999999999888753 111 123333332 23333221 23211 11111 1112345789999985433
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCce
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 670 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 670 (697)
..+..++-++-|+|+|||++++.. ..+..+++.++.+...++
T Consensus 108 --------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 --------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred --------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 234568888999999999999976 456677888888888885
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00024 Score=74.92 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccc-ccccc-ccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWC-EAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~-~~~~~-e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||.|.+++.|.+.-.+.=..+|+-.|-. +.+..+-+|.- +.. ..|-. .+|+ +.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~~--~~-- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIRI--YA-- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEEe--cC--
Confidence 56999999999999998752111101244555554 66666655531 111 12222 2343 3799999862 22
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
...+-|+.|+|+|||++|+..
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEe
Confidence 124679999999999999864
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0005 Score=71.76 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=66.3
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCCCchhhHhc----cCcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~~~l~~i~~----RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|..+.++...+.. |..+-+-| ..+..+-+ .|+-...+ ++.-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 57999999999888877653222 33322222 33333322 23311111 1110116999998543222
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
+..++-++-|+|+|||++|+++- .+..+++.+..+...++....
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 23577799999999999999864 344667777777777876654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00026 Score=75.54 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=66.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCC-CCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~t-yprtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++...+. -.|+-+|-. ..+..+.++ |+-..+...+..... .+..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 5899999999998877764221 123333332 333333322 221112222221222 246899999965433
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. ..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 237 ~l---------~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 VI---------KELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HH---------HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 22 3688899999999999999753 23455666655555 766544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0003 Score=69.38 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc------cCCC--C--CCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLP--Y--PSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da------~~LP--f--pd~sFDlV~ 352 (697)
...+|||+||++|.|+..+++++.....+.++|..+.. ....+...++|. ..+. + ..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45899999999999999999996556789999997651 001111111111 1111 1 226899999
Q ss_pred eccccccccc----cH-------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQ----KD-------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~----d~-------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|-.+ ..... +. ...+.-+...|+|||.+++-...
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 9763 22111 11 13455566789999999987764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=73.23 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
.+|||++||+|.++..++... ....|+++|.++..++.+++. ++. ..+...|+..+....+.||+|++.--
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 589999999999999997753 234799999999999887653 343 33566666543221457999997631
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+..++....+.+++||++.++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 234568888788899999999994
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=64.86 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=69.4
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC-cEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~-~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
+++|||+|.|.-+..|+=. .+...++.+|....-+.+.+ +-++. +.+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 7999999999988777654 24567999999987765443 44665 6676667776 555679999999866
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEe
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 446688999999999999988764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.002 Score=68.51 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=91.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHH----HHcCCCc--EEEeecccCC---CCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQL---PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~L---Pfpd~sFDlV~ 352 (697)
.+-+||||.||.|......++.... ..+|.-.|.|+..++.. +++|+.. .|.+.|+-+. .--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4578999999999988777665322 46889999999988654 4567653 5666665332 21233579999
Q ss_pred eccccccccccH---HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH---Hhh--hhh-------hhhhhhhhccceEE
Q 005432 353 CARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---ENQ--KRW-------NFVRDFVENLCWEL 417 (697)
Q Consensus 353 ~~~~llh~~~d~---~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~---e~~--~~W-------~~l~~la~~~~w~l 417 (697)
.+.. +...+|. ...|.-+.+.+.|||+++.+.-+..++-++-.. .++ ..| .+|..+.+.-+++.
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9987 6666553 457999999999999999987433322111111 111 234 66777777777765
Q ss_pred eee
Q 005432 418 VSQ 420 (697)
Q Consensus 418 l~~ 420 (697)
+.+
T Consensus 294 ~~q 296 (311)
T PF12147_consen 294 IDQ 296 (311)
T ss_pred hhh
Confidence 533
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00015 Score=73.34 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=60.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC---cccccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG---lig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..|||+|||.|.|...|.+....+ .|+-+|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998632111 12222322 2232232321 11122222 2334445899999998887643
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. +...+|-++.|+|+|||++++..
T Consensus 112 ~------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 35579999999999999999863
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=73.49 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=93.2
Q ss_pred ccccc-ccccchhhhHHHHHHHHhccccccccccCCC-EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 250 FRSAS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVR-TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 250 F~~~~-~~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~-~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
|...+ ..|+.+.+|......++..... .. ++|-+|||.-.+...+.+.|+. .|+.+|.|+..++....+
T Consensus 20 f~~rg~~~~ewY~~~l~l~~~i~~~~~p-------~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~ 90 (482)
T KOG2352|consen 20 FQPRGSDPFEWYGALLSLSGSIMKYLSP-------SDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVR 90 (482)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhhch-------hhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhc
Confidence 44432 4455555555544444432221 23 8999999999999999998754 689999999998888776
Q ss_pred CC----CcEEEeecccCCCCCCCCccEEEeccccccccccH---------HHHHHHHHHhccCCeEEEEEeC
Q 005432 328 GL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD---------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 328 gl----~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~---------~~~L~El~RvLKPGG~Lvis~p 386 (697)
+. ...+...++..+.|++++||+|+-.+.+.+...+. ...+.++.|+|+|||+++....
T Consensus 91 ~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 91 NAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 63 23467789999999999999999988744443322 2457899999999999887665
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00017 Score=80.16 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=62.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
..|||+|||.|+++..|.+. ..+ .|+-+|-. .++..+-+| |+ . ..-.+..+...+.+||.|.+...|.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 37999999999999988752 232 34444433 666666554 32 1 1111222222357899999988876542
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.-....++-++.|+|+|||++++.
T Consensus 243 ----~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 ----PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234557899999999999999985
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=66.92 Aligned_cols=104 Identities=17% Similarity=0.103 Sum_probs=65.9
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcE---E-EeecccCCCCCCCCccEEEec
Q 005432 282 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---I-GSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 282 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~---~-~~~da~~LPfpd~sFDlV~~~ 354 (697)
..+.+|||+|||+|..+..+.+.--...+++.+|.|+.|++.++.- ..... . ...-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3568999999999986655544311345789999999999877642 11111 0 00111123333 34999999
Q ss_pred ccccccccc-HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+++.+..+. ...+++.+.+.+.+ +|+|.+++..
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 997766542 23466666666655 9999998754
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=66.66 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=83.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC---CCCCccEEEecccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPf---pd~sFDlV~~~~~llh~~ 361 (697)
-++|||||=.......- . ....|+++|.++. ...+...|....|. +++.||+|.|+.+ +.+.
T Consensus 53 lrlLEVGals~~N~~s~--~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--S--GWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCcccc--c--CceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 68999999755443221 2 2345899998752 11233345555555 4679999999988 8888
Q ss_pred ccH---HHHHHHHHHhccCCeE-----EEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecCc----eEEEEe
Q 005432 362 QKD---GILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE----TVVWKK 429 (697)
Q Consensus 362 ~d~---~~~L~El~RvLKPGG~-----Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~~----~~IwqK 429 (697)
+++ ..+++.+++.|+|+|. |++..|.+-.... + .-.-+.+..+.+.+++..+..+.. ..+|++
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS-R----y~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS-R----YMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc-c----ccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 877 4699999999999999 9998886532110 0 112245566788889988766432 245555
Q ss_pred c
Q 005432 430 T 430 (697)
Q Consensus 430 ~ 430 (697)
.
T Consensus 193 ~ 193 (219)
T PF11968_consen 193 S 193 (219)
T ss_pred c
Confidence 3
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0002 Score=77.85 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=66.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||+|||.|.|+.+|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=|..+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 3799999999999998876332 45555554 555555443 22 22222223455544579999999888
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. +...+|-|+-|+|+|||.+++.+
T Consensus 208 LeHv~------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHVA------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87664 34679999999999999999874
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00026 Score=76.71 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=58.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+.|||+|||.|.++.+|+..+ .--|.-|=|.... .+...+- ..+-+.+...=-+.++. +.+||+|-|.+++.+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 689999999999998887632 2223333332221 1211110 11111111111122332 248999999988865
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. -+...+|-|+-|+|||||.+|+.
T Consensus 201 ~------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 4 35568999999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00094 Score=69.87 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=79.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc---Cc----ccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R---Gl----ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|+|+|||.|.++.+|... .+- .+|+-+|.. ..+..+-+. +. -=+..|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~-~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKE-RPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 36999999999999999863 221 233444433 333333322 22 112234544443 378999988543
Q ss_pred cccccCC----C-------------CCCC---cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeecc
Q 005432 619 LSLESGH----R-------------HRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 678 (697)
Q Consensus 619 ~~~~~~~----~-------------~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 678 (697)
+.....- . .... +..++-++-++|+|||++++.-....-+.++.+.+...+.......+-
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 3211000 0 0000 125667788999999999996444445667777777666533332344
Q ss_pred CCCccEEEEEc
Q 005432 679 NSDERLLICQK 689 (697)
Q Consensus 679 ~~~~~~li~~K 689 (697)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 55788888765
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0008 Score=66.92 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred eEEEecccCchhhhhhhhccCC---CeEEEEeecCCCCCchhhHhccCccccccccccc---------CCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~---~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~---------f~typrtyDl~H 614 (697)
.+|||+|||.|+++.++..... .|+..=+.|.. .+ .|+--+.+|..+. ++ +.+||+|=
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~--~~~~D~V~ 103 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVG--DDKVDVVM 103 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhC--CCCccEEE
Confidence 4899999999999887765211 24443333321 00 1222222344332 22 25799988
Q ss_pred ccCcc--cc-ccC--CCCCCCcchhhhhhcccccCCcEEEEE-cC----HHHHHHHHHHHhhcCceeEEeeecc---CCC
Q 005432 615 AEGLL--SL-ESG--HRHRCSTLDIFTEIDRILRPEGWVIIR-DT----ARLIESARALTTRLKWDARVIEIES---NSD 681 (697)
Q Consensus 615 ~~~~~--~~-~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~~e~---~~~ 681 (697)
++... +. |.- ....+.+..+|-++-|+|+|||.+++- .. .+++++++. .+ |+..+...-. .+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 75431 11 100 001123457899999999999999993 22 233333333 32 5555543222 245
Q ss_pred ccEEEEE
Q 005432 682 ERLLICQ 688 (697)
Q Consensus 682 ~~~li~~ 688 (697)
|..+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8888885
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=70.44 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
..+.|||||||.|.++...++.|. .+|++++.| +|.+.|++. .+ .+.+..+..+++.+|+ ..|+|++.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccc
Confidence 457899999999999998888873 468999987 477877653 22 2334445566666664 8999998765
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEE
Q 005432 357 GVDWDQKD-GILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvi 383 (697)
..-..... -...-..++.|||.|.++=
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 33322211 1233345699999999873
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0033 Score=68.26 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-cEE--EeecccC----CCC--CCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLS 347 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~ergl----~-~~~--~~~da~~----LPf--pd~s 347 (697)
...|+|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ .+++... ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 3589999999999877766541 123568999999999988765422 2 333 3344322 221 2245
Q ss_pred ccEEEeccccccccccH--HHHHHHHHH-hccCCeEEEEEeC
Q 005432 348 FDMLHCARCGVDWDQKD--GILLLEVDR-VLKPGGYFVWTSP 386 (697)
Q Consensus 348 FDlV~~~~~llh~~~d~--~~~L~El~R-vLKPGG~Lvis~p 386 (697)
..+++..+..+...+.. ..+|+++.+ .|+|||.|+|..-
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 78888777656655444 368999999 9999999998753
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0053 Score=65.64 Aligned_cols=103 Identities=17% Similarity=0.068 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------CcEEEeecccCC-CCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQL-PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~~~~~~~da~~L-Pfpd~sFDlV~ 352 (697)
.+++||-||-|.|..+..++++. ....++.+|+.+..++.+++.-. .+.+...|.... .-..++||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999985 36789999999999999987521 123333343322 21233899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+-.. -.-.+. ...+++.+++.|+++|.++...-.
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 8643 221111 157999999999999999998443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00085 Score=67.29 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-----cccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-----lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.++... .+. .-.++-.|.. ..+..+-++. +--+..|-.+ .+.-+.+||+|++...+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~-~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKS-APD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHh-cCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 58999999999999998863 221 0123333322 3333333332 1111122222 222236899999876664
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 345678999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00078 Score=70.06 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=66.7
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cccc-ccccccCCCCCCccccccccCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~-~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-.+|||+|||.|.++..|.+. .+- -+|+=+|-. ..+..+-++-- +.++ .|-.+..+ +.+||+|+++.+|...
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQP--PQALDLIFANASLQWL 106 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccCC--CCCccEEEEccChhhC
Confidence 468999999999999988762 111 123333332 33333322210 1111 12111122 3689999999888644
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcC--H--HHHHHHHHHHhhcCcee
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--RLIESARALTTRLKWDA 671 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~~~~~~~~~~~~~~W~~ 671 (697)
. +...+|-+|-|+|+|||.+++.-. . .....+++++....|..
T Consensus 107 ~------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 107 P------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 3 245789999999999999998621 1 11223445555555553
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00046 Score=73.84 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCCCCceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhcc-CcccccccccccC--CCCCCcccc
Q 005432 539 PSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDL 612 (697)
Q Consensus 539 ~~~~~~~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f--~typrtyDl 612 (697)
..+..+. +|||+|||.|+|...|.+. +-.|+.+-+.|.-..+.+.++-+| +++.+..|-+.+. ...+-++|+
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3445553 7999999999999998863 123555544432222344555444 6777788876542 111246888
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|-++-.. . + ....+++|+.|+|+|||+|+|.
T Consensus 206 V~~Dva~-p-----d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-P-----D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-c-----c--hHHHHHHHHHHhccCCCEEEEE
Confidence 8664421 1 1 1224678999999999999983
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00034 Score=61.83 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=46.2
Q ss_pred EecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--ccccc-cccccCCCCC-CccccccccCccc
Q 005432 550 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 550 mDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig~~~-~~~e~f~typ-rtyDl~H~~~~~~ 620 (697)
||+|||.|.+..+|++. . -...++=.|-. +-+..+-+| +. .-... +--+.+...+ .+||+|.+..+++
T Consensus 1 LdiGcG~G~~~~~l~~~-~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE-L--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHH-C---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHh-C--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999973 2 22334444433 444222222 21 11111 1122233333 5999999999998
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWV 648 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~ 648 (697)
+.. .+..+|-.+-++|+|||.+
T Consensus 78 ~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHHHTTT-TSS-EE
T ss_pred hhh------hHHHHHHHHHHHcCCCCCC
Confidence 763 4568899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00092 Score=68.72 Aligned_cols=134 Identities=21% Similarity=0.318 Sum_probs=78.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc--ccc-cccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--ig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.|+.+|.+. .+- .+|+-+|-. ..+..+ -..|+ +-+ ..|+-+.++ +.+||+|-|+--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 36999999999999999863 121 134444432 333222 22344 112 224334443 278999998655
Q ss_pred cccccCC---CCCCC-----------------cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeecc
Q 005432 619 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 678 (697)
Q Consensus 619 ~~~~~~~---~~~c~-----------------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 678 (697)
|...... ...+. ...++-++-|+|+|||.+++.......++++++.....|+......+-
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEeCC
Confidence 4431100 00000 125677899999999999998766667788888888787654443333
Q ss_pred CCCccEE
Q 005432 679 NSDERLL 685 (697)
Q Consensus 679 ~~~~~~l 685 (697)
.+..+++
T Consensus 244 ~~~~r~~ 250 (251)
T TIGR03534 244 AGKDRVV 250 (251)
T ss_pred CCCcCee
Confidence 3344443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0034 Score=65.68 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-CCCCC-CccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSL-SFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-Pfpd~-sFDlV 351 (697)
.+.+||=||-|.|..+..++++. ...+++.+|+++..++.|++-. .++.+...|+... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56899999999999999998874 3567999999999999987531 2445555554332 12223 89999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. -...+. ...+++.+++.|+|||.+++....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 97543 221111 147999999999999999998643
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=69.58 Aligned_cols=101 Identities=23% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.....+|+|.|.|..+..+... ++ .+.+++.....+-.++... ..+..+-+|+-+- .|. -|+|++-.++.||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3578999999999999999884 34 4778888877765554433 3344443443322 333 35999999988887
Q ss_pred ccH-HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 362 QKD-GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 362 ~d~-~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++. .++|+.++..|+|||.+++.+....
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 544 6899999999999999999987544
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0021 Score=67.79 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--------------------rgl~------------ 330 (697)
++.++||||||+-.+-..-+.. ...+|+..|.++.-++..++ .|-.
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997663333323 35678999999877653321 0100
Q ss_pred -c-EEEeecccCCC-CCC-----CCccEEEeccccccccccHH---HHHHHHHHhccCCeEEEEEeCCC
Q 005432 331 -A-MIGSFASKQLP-YPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 331 -~-~~~~~da~~LP-fpd-----~sFDlV~~~~~llh~~~d~~---~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ .+...|..+.+ +.. ..||+|++.+|+.....+.+ .+++.+.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0 13334544433 322 25999999999666666664 68999999999999999987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00029 Score=71.12 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc--Cccc---ccccccccCCCCCCccccccccC
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R--Glig---~~~~~~e~f~typrtyDl~H~~~ 617 (697)
...+++++++|||-|-|.+.|...-+.+.++-++|. -|..+-+| |+.. .-.+-.+..| +.+|||||++-
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~SE 114 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVLSE 114 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEEeh
Confidence 467999999999999999999875556666666543 22222222 2211 1112233334 38999999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEE---EcCH-------HHHHHHHHHHhhcCceeEEeeeccCC-CccEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTA-------RLIESARALTTRLKWDARVIEIESNS-DERLLI 686 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~-------~~~~~~~~~~~~~~W~~~~~~~e~~~-~~~~li 686 (697)
++--+. +.-.+..++-.|...|+|||.+|+ ||.. .--+.|.++....-=++.-.....++ +|.-|+
T Consensus 115 VlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T PF05401_consen 115 VLYYLD---DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLL 191 (201)
T ss_dssp -GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEE
T ss_pred HhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEe
Confidence 987765 445566778888899999999998 4322 12355555555554444444333333 455554
Q ss_pred E
Q 005432 687 C 687 (697)
Q Consensus 687 ~ 687 (697)
+
T Consensus 192 ~ 192 (201)
T PF05401_consen 192 A 192 (201)
T ss_dssp E
T ss_pred e
Confidence 4
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00071 Score=69.77 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=59.0
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhcc----Cc---c-cccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GF---V-GVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~R----Gl---i-g~~~~~~e~f~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++..|.+.- .+- .+|+-+|-. +-+..+-++ +. + =+..|.++ ++. ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VEI--KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC--CCCCEEeee
Confidence 479999999999998887520 111 134444433 333333222 21 1 12223322 221 358999887
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
..+.... . -....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~---~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP---P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC---H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7766543 1 1234789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=63.76 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=75.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---------hccCcccccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---------~~RGlig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|...+. +|+-.|-. ..+..+ -+||+.-+.+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 4799999999999999987433 33333433 333333 123355566777777654 589998655
Q ss_pred Ccccccc---------------CCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 617 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~---------------~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.-+.... +......+..++-++.|+|+|||++++--. ....+++.++.....|+....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 4332200 000122245688999999999999876422 233567778888888876554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00031 Score=68.56 Aligned_cols=135 Identities=16% Similarity=0.304 Sum_probs=87.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCC--cEEEe-------ecccCCCCCCCCccEEEec
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP--AMIGS-------FASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~--~~~~~-------~da~~LPfpd~sFDlV~~~ 354 (697)
++||++|.|.-.++..|.....+..+|...|-++..++..++- ..+ ..+.. ....+.....++||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 7899999996555555554445677889999999888665432 111 00000 0111222345689999999
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeeecC-ceEEEEecc
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD-ETVVWKKTS 431 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~~~-~~~IwqK~~ 431 (697)
.| +-+.+..+.+++.|++.|+|.|..++..|-... .-+.+..+....++....+.. +..|||+..
T Consensus 111 DC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-----------sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 111 DC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-----------SLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred cc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc-----------hHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99 555555678999999999999998888774321 223344456666777766643 456777643
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.003 Score=66.56 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc
Q 005432 263 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK 339 (697)
Q Consensus 263 y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~ 339 (697)
..+.+.+.....+ .++|||||+|.|.+|..|++++ ..|+++++++.+++..+++. .+..+..+|+.
T Consensus 18 v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaL 86 (259)
T COG0030 18 VIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchh
Confidence 3455555554433 3899999999999999999985 44899999999999888763 35667788888
Q ss_pred CCCCCCC-CccEEEeccc
Q 005432 340 QLPYPSL-SFDMLHCARC 356 (697)
Q Consensus 340 ~LPfpd~-sFDlV~~~~~ 356 (697)
..++++. .++.|+++--
T Consensus 87 k~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 87 KFDFPSLAQPYKVVANLP 104 (259)
T ss_pred cCcchhhcCCCEEEEcCC
Confidence 8888754 6899998854
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=65.33 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||+-||.|.|+..+++.+ ....|.++|.++..++.+++. ++. +....+|+..+.- .+.||.|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 34899999999999999999842 345699999999988766542 343 4456778777755 789999998743
Q ss_pred cccccccHHHHHHHHHHhccCCeEEE
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lv 382 (697)
.....+|..+.+++|+||.+.
T Consensus 179 -----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCcEEE
Confidence 223368889999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0024 Score=68.41 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc------CCceeEEEEecCCHHHHHHHHHc----CCC
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP 330 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~------g~~~~sV~gvD~S~~ml~~A~er----gl~ 330 (697)
....+.+.+++... ...+|||-.||+|.|...+.+. ......+.|+|+++.++..|+.. ++.
T Consensus 32 ~~i~~l~~~~~~~~--------~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--------KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcc--------ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 34444555555333 3478999999999998887763 12356799999999998877632 322
Q ss_pred c---EEEeecccCCCC-C-CCCccEEEeccccccc--c-----------------ccH-HHHHHHHHHhccCCeEEEEEe
Q 005432 331 A---MIGSFASKQLPY-P-SLSFDMLHCARCGVDW--D-----------------QKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 331 ~---~~~~~da~~LPf-p-d~sFDlV~~~~~llh~--~-----------------~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
. .+...+.-..+. . ...||+|+++--.-.. . ... -.++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1 244445433332 2 4789999997431111 0 011 247888999999999998888
Q ss_pred C
Q 005432 386 P 386 (697)
Q Consensus 386 p 386 (697)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 7
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00074 Score=70.38 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=67.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cc-----ccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig-----~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-+|||++||+|=+|..+.+. .+ .-.|+-.|-. +-|-++-+|-- .| ..+.==|.+|.-.+|||++=++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 47999999999999999873 22 3455555544 66666666643 12 1222234555334999999998776
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-+.. +++..|=||-|||+|||-+++=
T Consensus 130 rnv~------d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNVT------DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcCC------CHHHHHHHHHHhhcCCeEEEEE
Confidence 6543 5678999999999999988774
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00061 Score=70.77 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=58.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc--cccccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli--g~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||++||+|-++..|.+.-.+ .-.|+-.|-. +-|.++-+| |.. =....=.|.+|.-..|||.|=|+..+.
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~--~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGP--NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCC--ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 8999999999999888752111 1245555554 666666554 332 112222344553238999999877766
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. ++....|-||=|||||||.++|=
T Consensus 128 n~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 128 NF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp G-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 44 34667999999999999999984
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0052 Score=67.86 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=63.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-C-CC-------------
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 344 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-P-fp------------- 344 (697)
.+|||++||+|.++..+++.. ..|+++|.++.+++.|++. ++ ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888762 4799999999999888754 44 456666665442 1 10
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 345 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...||+|+.---. ..-...++..+.+ |++.++++.-.
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 2258999875331 1112345555543 78888888653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.007 Score=66.62 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--------C---C----
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--------Y---P---- 344 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--------f---p---- 344 (697)
.+|||++||+|.++..|++.. ..|+++|.++.+++.|++. ++ ++.+...++..+- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 3799999999999888754 34 4556666654421 1 0
Q ss_pred -CCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 345 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 345 -d~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...||+|+.---. ..-...++..+. +|++.++++..+
T Consensus 276 ~~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 276 KSYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred ccCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcCH
Confidence 1137988765321 011134445443 478888888653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=63.55 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=56.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---cccc-ccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
..|||+|||.|.++..+.+. .+- .-.|+-+|-. +.+..+-++ ++ +-+. .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~-~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKA-VGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHH-cCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 46999999999998888752 110 0123333322 222222221 11 1111 22221 222136899999877
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++... .....+|-++-++|+|||.+++.+
T Consensus 130 ~l~~~------~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV------PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC------CCHHHHHHHHHHhccCCcEEEEEE
Confidence 65433 456688999999999999998753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00098 Score=67.49 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=57.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cccc-ccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~-~~~~e~f~typrtyDl~H~~~~ 618 (697)
-+|||+|||.|.++..|.+.... ++=++.. ..+..+-+ -|+ +-.. .+..+-....+.+||+|.+..+
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 47999999999999988753222 2222322 22222222 122 1111 1111111122578999999887
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... ....+|-++.++|+|||.+++.+
T Consensus 122 l~~~~------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 76443 45578999999999999999875
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0013 Score=67.77 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=60.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
.+|||+|||+|-++.+|.+.. . -+|+-+|-. +-|..+-+++ ...+.-.+.+|.=+.+||+|-++..+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 479999999999999987621 1 256666655 5565555553 12233334455334899999998776433
Q ss_pred CCCCCcchhhhhhcccccCCc
Q 005432 626 RHRCSTLDIFTEIDRILRPEG 646 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G 646 (697)
-+.+..|-||.|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 346789999999999954
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0025 Score=63.98 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=68.3
Q ss_pred EEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCCCccccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.|+|||||.|.|+.++... +.. -.|+-+|.. ..+..+-+ -|+.. +..|..+..+.++..||.|.+..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~~---~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGET---GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 7999999999998766431 011 123333332 22332211 23211 11233333333445788887632
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEee
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
....+..++-++-|+|+|||.+++. -..+.+.++...++.+.++..+.+
T Consensus 120 ---------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 120 ---------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred ---------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEEE
Confidence 1134457888999999999999983 345667777777777777666554
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0009 Score=69.69 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=58.4
Q ss_pred eEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCC-CccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typ-rtyDl~H~~~~~ 619 (697)
..|||+|||.|.++.+|... ..+-+ .|+=+|.. .-+..+-+| |+..-..-.|..+...| ..||+|-+...+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 46999999999998887641 01211 23334432 333333222 32111111122222222 358988877666
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.... ......++-||-|+|+|||.+++.|.
T Consensus 136 ~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLE----PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCC----HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5543 12345799999999999999999863
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0052 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~ 334 (697)
...-+.+-+.+... . ..+.++||+=||+|.++...+.+|. ..++.+|.+...++..++. +.. ..+.
T Consensus 26 drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 26 DRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp HHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred HHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 44445555666533 0 1358999999999999999999984 4689999999988766543 332 3444
Q ss_pred eeccc-CCC---CCCCCccEEEeccccccccccHHHHHHHHH--HhccCCeEEEEEeC
Q 005432 335 SFASK-QLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 386 (697)
Q Consensus 335 ~~da~-~LP---fpd~sFDlV~~~~~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p 386 (697)
..|+. .++ .....||+|++--- +........++..+. .+|+++|.+++...
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ccCHHHHHHhhcccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 44422 221 24679999998754 332211256777776 79999999999765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0048 Score=65.70 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=81.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc----ccccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl----ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
..|+|+|||.|.++.+|... .+- .+|+-+|-. ..+.++-+ -|+ -=+..||.++++. ..||+|=++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~-~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE-FPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999863 221 134444443 44444433 233 1233677776643 4799987752
Q ss_pred cccccc----------CCCCCC---------CcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHh-hcCceeEEeeec
Q 005432 618 LLSLES----------GHRHRC---------STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWDARVIEIE 677 (697)
Q Consensus 618 ~~~~~~----------~~~~~c---------~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 677 (697)
-+.... -+...+ .+..++-+.-++|+|||++++--....-+.++++.. ...|......-+
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 211100 000000 133677888999999999999765555567777665 456753322223
Q ss_pred cCCCccEEEEEc
Q 005432 678 SNSDERLLICQK 689 (697)
Q Consensus 678 ~~~~~~~li~~K 689 (697)
-.+.++++++++
T Consensus 271 ~~g~~R~~~~~~ 282 (284)
T TIGR00536 271 LNGKERVVLGFY 282 (284)
T ss_pred CCCCceEEEEEe
Confidence 445788888764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0017 Score=68.13 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=55.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc--c-cccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig--~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|..+..+...-.+- ..|+=+|-. ..+..+-++ |+-. . ..|. +.++.-+.+||+|++...
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~--~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPT--GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 499999999987544332210110 123333332 344444332 3211 0 1222 223322379999998776
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. +...++-|+-|+|||||.+++.|
T Consensus 156 ~~~~~------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 23578999999999999999964
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0028 Score=63.60 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=67.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccc--c-ccccccC-CCCC-Ccccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV--L-HDWCEAF-PTYP-RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~--~-~~~~e~f-~typ-rtyDl~H~~ 616 (697)
+.|||+|||.|.|+.+|... .|- .||+=+|-. .-+..+ -..|+-.+ . .|.-+-. ..+| .++|.|+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~-~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ-NPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh-CCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 57999999999999999863 221 133333332 222222 23343111 1 1111111 1134 489999875
Q ss_pred CccccccC---CCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhh-cCcee
Q 005432 617 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDA 671 (697)
Q Consensus 617 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~-~~W~~ 671 (697)
.. ..|.. ...|.....+|-|+-|+|+|||.+++. |.....+.+.+.... -+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 32 12211 114556678899999999999999986 666556665554433 33554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0011 Score=77.64 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-ccccccccccCCC-C-CCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT-Y-PRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~~~~~e~f~t-y-prtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|... .+ ..+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 47999999999998888642 22 1244444443 334433332 21 1111111223442 2 489999998876
Q ss_pred cccccC----CCC---CCCcchhhhhhcccccCCcEEEEEcC
Q 005432 619 LSLESG----HRH---RCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 619 ~~~~~~----~~~---~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+..+-. .+. .-.+..+|-|+-|+|+|||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 654310 001 12455789999999999999999874
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=66.43 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccC--C---CCCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ--L---PYPSL 346 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~-------~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~--L---Pfpd~ 346 (697)
..+|||.|||+|.+...++++.. ....+.++|+++..+..++.. + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999988876521 136789999999999887654 1 122222222111 1 11125
Q ss_pred CccEEEeccc
Q 005432 347 SFDMLHCARC 356 (697)
Q Consensus 347 sFDlV~~~~~ 356 (697)
.||+|+++--
T Consensus 112 ~fD~IIgNPP 121 (524)
T TIGR02987 112 LFDIVITNPP 121 (524)
T ss_pred cccEEEeCCC
Confidence 7999999843
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0035 Score=68.70 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=73.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc---ccccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
..|||+|||.|.++..|.+. .+- -+|+=+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+...+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887652 111 134444443 44554444321 112221122233324799999888777655
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------------HHHHHHHHHHhhcCceeEEe
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
. +...+|-|+-|+|+|||.+++.+.. ...+++.+++++..++....
T Consensus 192 ~------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 P------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 2246899999999999999875321 12366777778877875444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=66.04 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-C---CCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-P---fpd~sFDlV~ 352 (697)
+++|||+=|=||.|+.+.+..|. .+++.+|.|...++.|++. |+ ...+.++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 58999999999999999998863 3689999999999999865 33 245666665332 1 2345999999
Q ss_pred eccccccc--------cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~--------~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.---.+.- ..+...++..+.++|+|||.++++.-..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 75322221 1233468899999999999999987543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.042 Score=61.18 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cC-----cccccccccccCCCCC-Cccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-----FVGVLHDWCEAFPTYP-RTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RG-----lig~~~~~~e~f~typ-rtyDl~H~ 615 (697)
..|||+|||+|-.+.+|.+. .|-. .|+-+|.. .-+..+-+ -+ -+-+++ ...++..+ .+||+|-|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-NPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence 47999999999999998863 2221 22333332 22222211 01 122222 22333333 58999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+-.|..-... ..-....++-+.-|+|+|||.+++-
T Consensus 305 NPPfh~~~~~-~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 305 NPPFHQQHAL-TDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcCcccCccC-CHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8777532200 0001236788899999999999985
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=62.40 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CC----cEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP----AMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~----~~~~ 334 (697)
....+++.+-...++ ++.|||||.|||.+|..|++.+ ..|++++.++.|+....+|. .+ ..+.
T Consensus 44 p~v~~~I~~ka~~k~--------tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKP--------TDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCC--------CCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 344445554444444 4899999999999999999985 45899999999998887763 33 2344
Q ss_pred eecccCCCCCCCCccEEEeccc
Q 005432 335 SFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|....++| .||.++++--
T Consensus 113 ~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 113 HGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred ecccccCCCc--ccceeeccCC
Confidence 5565555554 5999998743
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.012 Score=64.38 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
.+.++|||||++|.++..|+++|. .|+++|..+ |-... .....+.+...+.....-+.+.+|+++|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 568999999999999999999974 689999654 32222 2233455554454433222678999998855 5
Q ss_pred cHHHHHHHHHHhccCC--eEEEEEeC
Q 005432 363 KDGILLLEVDRVLKPG--GYFVWTSP 386 (697)
Q Consensus 363 d~~~~L~El~RvLKPG--G~Lvis~p 386 (697)
.|..++.-+.+.|..| ..+++.--
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 5777778888888776 45666543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=60.29 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=54.1
Q ss_pred eEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHhccCcccccccccc---------cCCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e---------~f~typrtyDl~H 614 (697)
.+|||+|||.|+|...|++.. ..|..+-+.|.. .+ .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---PI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---CC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 379999999999988776531 124444443311 11 122222233332 233 26899999
Q ss_pred ccCccccccCCCCC--------CCcchhhhhhcccccCCcEEEEE
Q 005432 615 AEGLLSLESGHRHR--------CSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 615 ~~~~~~~~~~~~~~--------c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
++....... .. +....+|-|+=|+|+|||.|++.
T Consensus 123 S~~~~~~~g---~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSG---TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred cCCCCccCC---ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 865322111 11 11246889999999999999995
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0066 Score=62.01 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=62.3
Q ss_pred ccccch-hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------
Q 005432 255 LIFDGV-EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------ 327 (697)
Q Consensus 255 ~~yd~~-~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------ 327 (697)
..|-+. ......+.+.+.+.+ .+..+|||||.|......+-.- ......|+++.+...+.|...
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--------~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--------DDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--------T-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCC--------CCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 345332 333444445554443 4899999999999876665431 234478999998876555421
Q ss_pred -----CC---CcEEEeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEE
Q 005432 328 -----GL---PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 328 -----gl---~~~~~~~da~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
|. ++.+..+|....++.. ..-|+|++++.. +.++....|.++..-||+|-+++-.
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 22 2233444432222110 236999998763 3455567788888999998876643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0013 Score=66.57 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=73.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCC--CCCCccccccccCccccccCC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP--TYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~--typrtyDl~H~~~~~~~~~~~ 625 (697)
.|||+|||-|--|-+|.+.+.+|-..=..+..-.....++-++||- ++.++--+. .+|..||+|-+..+|-...
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-- 108 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-- 108 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC--
Confidence 7999999999999999986655444333332222233355667874 333333222 2468999999877776553
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE---c--------CHHHHHHHHHHHhhcC-ceeEEee
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIR---D--------TARLIESARALTTRLK-WDARVIE 675 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~---d--------~~~~~~~~~~~~~~~~-W~~~~~~ 675 (697)
+-.+..|+-.|-.-++||||+++- + +.+..-+-.+|..-.. |++...+
T Consensus 109 --~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~ 168 (192)
T PF03848_consen 109 --RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYN 168 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEE
Confidence 456778899999999999999983 1 1233333344444443 9987653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0057 Score=65.78 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
...+||.+||.|..+..+++.......|+|+|.++.+++.|+++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 37999999999999999998753356799999999999999875
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0018 Score=66.28 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=60.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc--ccccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig--~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||+|||.|.++..|.+.. .+|+-++.. +.+..+-++ |+-. ...++.+-....+.+||+|.++.++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG-----ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC-----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 59999999999999987632 244444443 334333332 3311 12223222112236899999988877
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
... +...+|-++.|+|+|||.+++..
T Consensus 126 ~~~------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVP------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 543 34578999999999999999874
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0026 Score=60.87 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhc-cCCCeEEEEeecCCCC-CchhhHhc----cCcc--c-ccccccccCCC-CCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAFPT-YPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~-~~~~vwvmnv~p~~~~-~~l~~i~~----RGli--g-~~~~~~e~f~t-yprtyDl~H~~ 616 (697)
-+|||+|||.|-+.-.|.+ .....=++. +|-. ..+..+-. .|+- = ...|+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~g---vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIG---VDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEE---EESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEE---EECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999999883 111222333 3333 34443333 3442 1 1233333 332 44789999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
..+... .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888433 44557889999999999999998765
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0024 Score=68.43 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=62.9
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCcccccccccccC--CCCCCccccccccC
Q 005432 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAF--PTYPRTYDLVHAEG 617 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGlig~~~~~~e~f--~typrtyDl~H~~~ 617 (697)
...+.|+|+|||.|.++.++.+. .|-. +++-.|-+..+.. +-+.|+-.-+.-.+--| ..+| .+|++-.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-FPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-CCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 34679999999999999999873 3322 2333343433433 33446533222222222 1234 379987777
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++..|.. -....+|-++-|.|+|||.++|-|
T Consensus 224 ~lh~~~~----~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 224 ILYSANE----QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhcCCh----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7766641 122358889999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0041 Score=63.64 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=68.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-.|||+|||.|.++..+... .. -+|+-+|-. ..+..+-+ .|+ .-+..|+.+.++ +.+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA--GA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCC
Confidence 37999999999998888752 21 123333322 33332222 233 122345555444 2689999997544
Q ss_pred ccccC--------------CC-CCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005432 620 SLESG--------------HR-HRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 620 ~~~~~--------------~~-~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
..-.. .. ..+.+..++-++-|+|+|||.+++- .+....+++.++.++-.|++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 32110 00 0112446777899999999999983 22223445555555556655443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0091 Score=61.79 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=50.5
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchh----hHhcc-CcccccccccccC--CCCCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~----~i~~R-Glig~~~~~~e~f--~typrtyDl~H~~~~ 618 (697)
.|||+|||.|++...|.+.- ..|+.+-+-| .-|. .+-+| ++.-+..|-.++. ...+.+||.|=++..
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 69999999999999997621 1233332222 1121 22222 3344444544431 112456887643111
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. .+ ....+|-|+-|+|||||+++|
T Consensus 151 ~-p~-------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 151 Q-PN-------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred C-hh-------HHHHHHHHHHHhcCCCcEEEE
Confidence 0 00 112346799999999999999
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=59.03 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-cEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+++|||.|.|.-+..|+=. .+...++-+|....-+.+. .+-+++ +.+...-++.+.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 579999999999988887622 2445689999987665443 344666 77777777777543222999998866
Q ss_pred cccccHHHHHHHHHHhccCCeEEEE
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
.+...++.=+...+|+||.+++
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchh
Confidence 3455677778899999998765
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=66.02 Aligned_cols=138 Identities=10% Similarity=0.091 Sum_probs=83.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cccccccccc-CCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEA-FPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~-f~typrtyDl~H~~~~~ 619 (697)
+|+|+|||.|.++.+|... .+- .+|+-+|-. ..+..+-+ .|+ .=+-.|+.+. ++. ...||+|-|+--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999888742 221 234444443 44443332 232 1223455443 221 2479999996654
Q ss_pred cccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCC
Q 005432 620 SLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 680 (697)
Q Consensus 620 ~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~ 680 (697)
.... +..+... +..++-+.-+.|+|||++++--..+.-++++++++...|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 2211 0000000 22566667789999999998655566778888888888876544445556
Q ss_pred CccEEEEEc
Q 005432 681 DERLLICQK 689 (697)
Q Consensus 681 ~~~~li~~K 689 (697)
.++++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 799998874
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0053 Score=64.86 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=79.0
Q ss_pred CccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCch----hhhhhhhccCC--CeEEE
Q 005432 500 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG----GFNSALLEKGK--SVWVM 573 (697)
Q Consensus 500 ~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g----~Faaal~~~~~--~vwvm 573 (697)
+...|--|..+|..-.+.....+ +... ..+.--.|+|+|||+| +.|-.|.+... .-|..
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l---~~~~------------~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~ 133 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLL---IASR------------RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDV 133 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHH---HHhc------------CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCe
Confidence 34557778888887665544322 2100 0112357999999999 46666654211 12334
Q ss_pred EeecCCCC-CchhhHhccCcc-----------------------------------cccccccccCCCCCCccccccccC
Q 005432 574 NVVPTIGT-NHLPMILDRGFV-----------------------------------GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 574 nv~p~~~~-~~l~~i~~RGli-----------------------------------g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.|+-+|-. .-|..+- +|+- =..||-.+.-+ -+..||+|.|..
T Consensus 134 ~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crn 211 (264)
T smart00138 134 KILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRN 211 (264)
T ss_pred EEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEech
Confidence 55555544 3343322 2210 01244444322 137899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHH
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 655 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~ 655 (697)
+|.... .-....++-++-|+|+|||++++-....
T Consensus 212 vl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 212 VLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 876653 1223469999999999999999976543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0068 Score=58.51 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=56.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+..++|+|||.|-+.....-. ....+.|+|+.++.++.+... .+++.+.+++...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4578999999999987444332 345789999999999988654 35566778888888888899999998754
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.031 Score=58.12 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEE-EeecccCCC---CCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~LP---fpd~sFDlV~~~~~ll 358 (697)
+++.+||||+-||.||..++++| ...|+++|..-.++..-.+....+.. ...++..+. +. +..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence 46899999999999999999997 45799999999888777665554443 222333332 22 2678999876533
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhh--------hhhhHH-hhhhhhhhhhhhhccceEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA--------FLRNKE-NQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~--------~lr~~e-~~~~W~~l~~la~~~~w~ll 418 (697)
. ...+|..+..+++|+|.++.-.-+....+ -.++.+ ....-..+..++...+|...
T Consensus 156 S----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 156 S----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred h----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 3 45799999999999999887654332211 112222 23344666777777788765
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.006 Score=64.00 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=77.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCC-CCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~t-yprtyDl~H~~~~~~ 620 (697)
.+|+|+|||.|.++-+|... .+- .+|+-+|-. ..+..+-+ -|+--+-.|+.+.++. +...||+|=++--+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~-~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA-LDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888752 221 133334432 33333222 2321133455544432 234699998765443
Q ss_pred cccC----------CCCCCC----------cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccC
Q 005432 621 LESG----------HRHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 679 (697)
Q Consensus 621 ~~~~----------~~~~c~----------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 679 (697)
.... ...++. +..++-...++|+|||.+++--..+...++..+.+...|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 2110 000111 2367778889999999999865555677888888888888888775543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0043 Score=63.37 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=60.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
--.|=|||||-|-.|+++-. +..|.-.-.|..+..=| +-|= ---|++. .+.|++=+ |+|+-.
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vt---acdi--------a~vPL~~--~svDv~Vf--cLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVT---ACDI--------ANVPLED--ESVDVAVF--CLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S----EEEEESS-SSTTEE---ES-T--------TS-S--T--T-EEEEEE--ES---S--
T ss_pred CEEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEE---EecC--------ccCcCCC--CceeEEEE--EhhhhC--
Confidence 34899999999999999853 23455555555433211 1110 0123333 78888655 565533
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEcCHHHH---HHHHHHHhhcCceeEEeee
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIEI 676 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~~ 676 (697)
=+..+.|.|..|||||||.++|-+-..-. +.-.+..+++-.+....|.
T Consensus 135 ---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 135 ---TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp ---S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ---CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 34558999999999999999997654443 3334566778888887753
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0051 Score=68.45 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=72.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-----CchhhHhccCcc---ccccccc---ccCCCCCCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFV---GVLHDWC---EAFPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGli---g~~~~~~---e~f~typrtyDl~H~ 615 (697)
..++|+|||.|.|..+|.... |= .|++=.+-. ....-+..+|+- -+..|-- +.|+. .++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~-P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~--~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN-PN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS--NSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC-CC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC--CceeEEEE
Confidence 479999999999999998632 21 133333332 222344556651 1223332 34443 79999997
Q ss_pred cCccccccCCCCC-CCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhc-Ccee
Q 005432 616 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 671 (697)
Q Consensus 616 ~~~~~~~~~~~~~-c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 671 (697)
... ..|...++| =-...+|-|+-|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 422 335433332 12257899999999999999986 6666666655554443 5554
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0035 Score=63.85 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred eEEEecccCchhhhhhhhccCCC---eEEEEeecCCCCCchhhH----hccCc---ccccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~---vwvmnv~p~~~~~~l~~i----~~RGl---ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.+++.|.+.-.+ |..+-+-| ..+..+ -+.|+ .=+..|..+.++. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 37999999999999998763222 33332222 222222 22343 1122344443333 2579999985
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc------------cccHHHHHhcCcCcEEEEE
Confidence 4332 2344566889999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.029 Score=61.86 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHH----cCCCc-EEEeecccCCC--CC-CCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLP--YP-SLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A~e----rgl~~-~~~~~da~~LP--fp-d~sFDlV~~ 353 (697)
++.+|||+.++.|.=|.++++..-. ...|+++|.++.-++...+ .|+.. .+...|+..++ .+ .+.||.|++
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 4589999999999999999887432 2346999999877755543 36553 45556665554 22 235999985
Q ss_pred ----ccc-ccc------c--ccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 354 ----ARC-GVD------W--DQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ----~~~-llh------~--~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+.. .++ | .+. ..++|....++|||||.|+.++-....
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 221 121 1 111 125789999999999999999865543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.015 Score=64.57 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=70.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEEeccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~~~~~ll 358 (697)
-+|||+-||+|..+..++.+......|+++|.++..++.+++. ++. +.+.+.|+..+- ...+.||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4899999999999999998722235699999999999877653 232 455555655432 1235799998653 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+..++..+.+.+++||++.++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 234579999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0035 Score=63.48 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCccc---cc-ccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVG---VL-HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGlig---~~-~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||+|.+++.|.+. +..|..+-+.|.-....-.-+...|+-. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 36999999999999887642 1123333333221110001122345422 22 244444443 3689999986554
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. +.=|+-|+|+|||.+++-
T Consensus 153 ~~------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch------------hhHHHHHhcCcCcEEEEE
Confidence 32 223677999999999984
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0019 Score=66.58 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHhhc-ccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh
Q 005432 508 TENWKTAVGNFWSLLS-PLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM 586 (697)
Q Consensus 508 ~~~w~~~v~~Y~~~l~-~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~ 586 (697)
.+.|...+..+.+... ..+.. .+++..+++|+|+|+|.|.|+++++.. .|=+ .++-.|-|..+..
T Consensus 73 ~~~f~~~m~~~~~~~~~~~~~~-----------~~d~~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~v~~~ 138 (241)
T PF00891_consen 73 AKRFNAAMAEYSRLNAFDILLE-----------AFDFSGFKTVVDVGGGSGHFAIALARA-YPNL--RATVFDLPEVIEQ 138 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HSTTTTSSEEEEET-TTSHHHHHHHHH-STTS--EEEEEE-HHHHCC
T ss_pred HHHHHHHHHhhhhcchhhhhhc-----------cccccCccEEEeccCcchHHHHHHHHH-CCCC--cceeeccHhhhhc
Confidence 4566666666654433 22211 234677899999999999999999974 5533 2344455544444
Q ss_pred Hhcc-CcccccccccccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCC--cEEEEEc
Q 005432 587 ILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPE--GWVIIRD 652 (697)
Q Consensus 587 i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~--G~~i~~d 652 (697)
+.+. .+--+=||. |.++|. +|++...+++..|.. +.|. .||--+=+.|+|| |.++|-|
T Consensus 139 ~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh~~~d--~~~~--~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 139 AKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLHDWSD--EDCV--KILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHHTTTEEEEES-T---TTCCSS-ESEEEEESSGGGS-H--HHHH--HHHHHHHHHSEECTTEEEEEEE
T ss_pred cccccccccccccH---Hhhhcc-ccceeeehhhhhcch--HHHH--HHHHHHHHHhCCCCCCeEEEEe
Confidence 4441 122233333 355566 999999999999973 3343 5899999999999 9999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0028 Score=53.63 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=56.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh---ccCc---cccc-ccccccCCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~---~RGl---ig~~-~~~~e~f~typrtyDl~H~~~~~ 619 (697)
+|+|+|||.|++...+.+ .+. .++.-.|.. +.+..+. +.+. +-.+ .|+...-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999985 111 223333322 2222221 1111 1111 22222221134789999998887
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... -....++-.+.+.|||||++++.
T Consensus 77 ~~~~-----~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLV-----EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehh-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6521 13346888889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.034 Score=58.61 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeec
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 337 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 337 (697)
....+.+.+.+....+ ..|||||+|+|.+|..|++.+ ..++++|.++.+++..+++. .++.+...|
T Consensus 16 ~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 16 PNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecc
Confidence 4566677777765444 899999999999999999985 57899999999999888753 466777788
Q ss_pred ccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccC
Q 005432 338 SKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 377 (697)
Q Consensus 338 a~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKP 377 (697)
+..+..+. +.-..|+++-- ++. ...++..+...-+.
T Consensus 85 ~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 85 FLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred hhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 87776554 44556666633 221 23566666664343
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.034 Score=57.41 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCcEEEee
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAMIGSF 336 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~~~~~ 336 (697)
..+...++..+..+.. .+.-.++.+||-+|+.+|....++++--.....|++++.|+.. +..|++|. ++.-...
T Consensus 52 ~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~ 129 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILE 129 (229)
T ss_dssp -TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES
T ss_pred CchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeec
Confidence 4455556665543322 1222356899999999999999988763334568999999854 45666653 4433334
Q ss_pred cccCCC----CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 337 ASKQLP----YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 337 da~~LP----fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+. .| .--+..|+|++--+ ..+..+.++.++...||+||.++++..
T Consensus 130 DAr-~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DAR-HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TT-SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 543 33 11247999998633 223345688889999999999999854
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0063 Score=55.05 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=53.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccc---ccc--ccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV---LHD--WCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~---~~~--~~e~f~typrtyDl~H~~ 616 (697)
.+|+|+|||.|.++..+.+. .+- .+|+-.|-. ..+..+ -..|+-.+ ..| |+.+ .-+.+||.|=+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARL-VPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 48999999999999999863 221 234444432 223221 12232111 112 2222 223579988664
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..... +..++-++-|+|+|||++++.
T Consensus 96 ~~~~~---------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGL---------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccchh---------HHHHHHHHHHHcCCCCEEEEE
Confidence 43322 237899999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0045 Score=63.55 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred eeEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhccCc---ccccccccccCCCCCCccccccccCccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.++..|.+.- +.-...+|+-+|-. +.+..+.++.- +-+...=++.++.-+.+||+|-|+.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 4689999999999988876310 00112356667765 66666655421 1111111234444358999999999887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.. +. .+..+|-||-|++| |.+++.|
T Consensus 141 h~~---d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLD---DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCC---hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 765 21 24468999999999 5566554
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0035 Score=64.98 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=77.5
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccc--------cccCCCCCCccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDW--------CEAFPTYPRTYDLVHA 615 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~--------~e~f~typrtyDl~H~ 615 (697)
.-|.+.|+|||.| +||..+.. . -=+|+-+|-. .+|.++ .-+.--+||.- -+++..=+.+-|||-|
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae-~---~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAE-H---YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCC-cchHHHHH-h---hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 4679999999999 88877642 1 2267777766 777744 33333333333 3444444799999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCc-EEE---EEcCHHHHHHHHHHHhhcCce
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 670 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G-~~i---~~d~~~~~~~~~~~~~~~~W~ 670 (697)
..|+. =|+++..+-++-|||||.| .+. .+|+.-.+-++.++..+++|+
T Consensus 107 Aqa~H-------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAVH-------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhHH-------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 99874 3778889999999999999 222 355555556666666777765
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.005 Score=67.54 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=59.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccccccccccCCCCCCccccccccCccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.|+|+|||.|.++++|.+. .+-. .|+-+|.. .-|..+ -+.|+-+.++ +...++..+..||+|-++-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~-~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-SPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999999863 2311 12333332 222111 1223322221 223344345889999998877532
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. ...-....++-++-|.|+|||.++|-.
T Consensus 275 ~~-~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 275 IQ-TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cc-ccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 10 011234578999999999999998853
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.061 Score=55.68 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CcEEEeeccc-CCC-----CCCCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFASK-QLP-----YPSLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~da~-~LP-----fpd~sFDlV 351 (697)
++++||||.=||..+..++..-.....++++|++++..+.+.+ .|+ .+.+..+.+. .|+ .+.++||+|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4899999988888777776654445679999999988877643 233 2333333321 111 356899999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+. -+|-++-...+.++.++||+||.+++.-
T Consensus 154 Fv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 84 3445555678999999999999999864
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.043 Score=56.31 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=80.1
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----Cc
Q 005432 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PA 331 (697)
Q Consensus 256 ~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~ 331 (697)
|-.....+++..++.+.. ++.+||+||-|-|.....+.+.... .-.-++.++..++..+.-|- ++
T Consensus 83 Mm~WEtpiMha~A~ai~t---------kggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nV 151 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIST---------KGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENV 151 (271)
T ss_pred hhhhhhHHHHHHHHHHhh---------CCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccce
Confidence 333345677777777662 4579999999999998888776432 23557899999988887653 23
Q ss_pred EEEeecc-cCCC-CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 332 MIGSFAS-KQLP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 332 ~~~~~da-~~LP-fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.+..+-- ..++ ++|+.||-|.---- -.+-++...+...+.|+|||+|.|-+--
T Consensus 152 iil~g~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 152 IILEGRWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred EEEecchHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3222211 1122 67889999985422 2344566678889999999999987643
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.077 Score=58.23 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||+=||.|.|+..+++.+.. .|.++|+++..++..++. ++. +...++|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 478999999999999999998744 399999999999877654 333 34567888888766579999998754
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.+...++....+.+++||.+.+-...+..
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 33457888899999999999998876543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.016 Score=62.10 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccC-CC--CCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~-LP--fpd~sFDlV~~ 353 (697)
..+|||+=|=||.|+.+.+..| ..+++.+|.|..+++.+++. ++ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999988775 45689999999999988764 33 33455555432 11 12468999998
Q ss_pred cccccc-----ccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 354 ARCGVD-----WDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh-----~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
---.+. ...+...++..+.++|+|||.++++.-..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 532221 11233568889999999999998876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.032 Score=56.93 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
++.+|+|+||-+|+++..+++.......|+++|+.+-- ....+.+.++|...-+ +....+|+|+|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 35899999999999999999875444458899986521 1123555556654432 344457999975
Q ss_pred ccc---ccccccH-------HHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~l---lh~~~d~-------~~~L~El~RvLKPGG~Lvis~p 386 (697)
..- -++.-|. ..++.-...+|+|||.|++-++
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 331 1121111 2456667789999999999876
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0025 Score=61.95 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=45.4
Q ss_pred cccCCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCCChh
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQ 391 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~~~ 391 (697)
.....+|.++|.|+|.|.+++.|..-+. ..++++++|+|||||+|-++.|.....
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3456789999999999999977765433 469999999999999999999876553
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.007 Score=60.48 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=53.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCC-CccccccccCccccccCC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typ-rtyDl~H~~~~~~~~~~~ 625 (697)
+|||+|||.|.+..+|.+. ..+ +++-+|.. ..+..+.++|+--+..|..+.++.++ ++||+|-+...|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 7999999999999999752 222 12222322 44545556675333444444333343 7999999998886554
Q ss_pred CCCCCcchhhhhhcccccC
Q 005432 626 RHRCSTLDIFTEIDRILRP 644 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP 644 (697)
+...+|-||-|++++
T Consensus 90 ----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ----NPEEILDEMLRVGRH 104 (194)
T ss_pred ----CHHHHHHHHHHhCCe
Confidence 244567777666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0021 Score=66.23 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=92.5
Q ss_pred CCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCccc-ccccccccCC--CCCCccccccccC
Q 005432 542 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFP--TYPRTYDLVHAEG 617 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig-~~~~~~e~f~--typrtyDl~H~~~ 617 (697)
+.+.+|.++|+|||+|=++-+|.+. +=-+.=+|-. |-|-.+.|+|+-- .+|-=-..|. .=+.-+|||-+..
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~-----a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM-----ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH-----HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 3456999999999999999999862 1122334434 8899999999821 1111112244 3468899999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeee-----
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI----- 676 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~----- 676 (697)
+|.-. -.++.++.=..+.|.|||.|+++-.. .--..|+.+.++---+++.++-
T Consensus 197 Vl~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~ 270 (287)
T COG4976 197 VLPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRR 270 (287)
T ss_pred HHHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchh
Confidence 98744 46778999999999999999997221 1124566677776676654421
Q ss_pred ccC-C-CccEEEEEcc
Q 005432 677 ESN-S-DERLLICQKP 690 (697)
Q Consensus 677 e~~-~-~~~~li~~K~ 690 (697)
+.+ + ...+.|++|+
T Consensus 271 d~g~pv~G~L~iark~ 286 (287)
T COG4976 271 DAGEPVPGILVIARKK 286 (287)
T ss_pred hcCCCCCCceEEEecC
Confidence 112 2 4566777764
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.022 Score=60.12 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=74.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCC-CCchhhHhcc-Cccc-------ccccccccCCCCCCcccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDR-GFVG-------VLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~-~~~l~~i~~R-Glig-------~~~~~~e~f~typrtyDl~H~~ 616 (697)
-++|||+|||.|+++.+|... .|- +.|+-++- +..+.++-+. ++.+ +..|--+-+...|.+||+|=++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 568999999999999888752 232 22333333 2333333332 1111 1123323334456789999765
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE---cCHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
. |+.... ........++-++-++|+|||.+++- .+...-+.++.+.....-.+.+...+.. ..-++++.|
T Consensus 144 ~-~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~-~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESH-GNVAVFAFK 216 (262)
T ss_pred C-CCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCC-ccEEEEEEC
Confidence 2 332110 01122357888999999999999972 3333333344454444433334333222 246777876
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.022 Score=54.37 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=59.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------cEEEeecccCCCCCCCCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~-----~g~~~~sV~gvD~S~~ml~~A~ergl--~------~~~~~~da~~LPfpd~sFD 349 (697)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.- . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 457999999999999999988 3 45779999999998877765421 1 111111111111 144566
Q ss_pred EEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 350 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.. |-..+. ..+|+.+.+ |+-.+++..|.=
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 66644 434444 345555555 666666666643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0086 Score=60.80 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=59.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.|+.+|.+... .|+-+|.. +.+..+-++ |+-..++-....++.-+.+||+|.+..++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 35899999999999999986322 24444433 444444332 221112222222444457899999988886
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
++. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 653 13455777888888766665555443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.014 Score=61.15 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCCCC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRH 627 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~ 627 (697)
.|-|||||-|-.|..- ..+|--|-+|+++..=+.--| .+ -|+. .+|-|++-+ |+|+--
T Consensus 183 vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm---------~~--vPl~--d~svDvaV~--CLSLMg---- 240 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDM---------RN--VPLE--DESVDVAVF--CLSLMG---- 240 (325)
T ss_pred EEEecccchhhhhhcc---ccceeeeeeecCCCceeeccc---------cC--CcCc--cCcccEEEe--eHhhhc----
Confidence 6889999999888743 368999998888775222100 00 2333 488998654 677643
Q ss_pred CCCcchhhhhhcccccCCcEEEEEcCHHHHHHHH---HHHhhcCceeEEee
Q 005432 628 RCSTLDIFTEIDRILRPEGWVIIRDTARLIESAR---ALTTRLKWDARVIE 675 (697)
Q Consensus 628 ~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~---~~~~~~~W~~~~~~ 675 (697)
-++-+.+.|.+|||+|||.++|-+-......++ .-.+.|..++...+
T Consensus 241 -tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 241 -TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred -ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 466799999999999999999975544433333 33456777776665
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.011 Score=60.44 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=48.7
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhc----cCcccccccccccCCCCC--CccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~----RGlig~~~~~~e~f~typ--rtyDl~H~~~ 617 (697)
.+|||+|||+|.+++.|.+. +..|..+-+-| ..+..+-+ -|+-.+---....+..++ ..||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 47999999999999877642 01333333322 22222221 233111111122222222 6799999854
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc------------cchHHHHHhhCCCcEEEEE
Confidence 432 2334556689999999884
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.086 Score=55.83 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=78.9
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeec
Q 005432 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFA 337 (697)
Q Consensus 264 ~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~d 337 (697)
+..+..+|...++ .+|||-|.|+|+++..+++.-.++.++...|.++.-.+.|++. ++ ++.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 3456677777776 8999999999999999998766777899999998877777643 43 34454445
Q ss_pred ccCCCC--CCCCccEEEeccccccccccHHHHHHHHHHhccCCe-EEEEEeCC
Q 005432 338 SKQLPY--PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPL 387 (697)
Q Consensus 338 a~~LPf--pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG-~Lvis~p~ 387 (697)
.....| .+..+|.|+.-. +.|-.++--++.+||.+| +|+--.|+
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHH
Confidence 554444 467899997542 445567777888999866 66554454
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.063 Score=64.42 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc----c-ccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----G-VLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli----g-~~~~~~e~f~typrtyDl~H~~ 616 (697)
+.|||++||+|+|+-++...+-. .|+-+|.. .-+..+-+ -|+- - +-.|..+.+..+.++||+|=++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 58999999999999999863211 24444543 33332222 2331 0 1223222222235789999886
Q ss_pred Cc-cccccCC----CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeee
Q 005432 617 GL-LSLESGH----RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 617 ~~-~~~~~~~----~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
-- |+.-... ...-....++-..=|+|+|||.+++......+....+.+..-.+++.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 43 2211000 000123467777789999999999976655555556677777888877753
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.008 Score=60.65 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=86.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCC-CccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typ-rtyDl~H~~~~~~~~~~~ 625 (697)
-.|||.|||.|.+-++|.+. +.|=..-|= -.+..+.-..+||+-=+-+|.-+-++.|| .+||.|=.++-+.+..
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 36999999999999999984 666665442 12356778899999888889999999999 7999999988876654
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE------------------------------cCH----HHHHHHHHHHhhcCcee
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIR------------------------------DTA----RLIESARALTTRLKWDA 671 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------------d~~----~~~~~~~~~~~~~~W~~ 671 (697)
.-+.+|-|| ||=|.-.|++ |++ -.+...+++.+.+..++
T Consensus 90 ----~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 90 ----RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred ----HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 244789999 5557778874 232 33677778888887766
Q ss_pred EE
Q 005432 672 RV 673 (697)
Q Consensus 672 ~~ 673 (697)
.-
T Consensus 163 ~~ 164 (193)
T PF07021_consen 163 EE 164 (193)
T ss_pred EE
Confidence 53
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.025 Score=60.43 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---c-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|... .+- .+|+-+|-. ..+.++-+ .|+- - +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~-~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYA-FPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 47999999999999999863 221 134444443 34433332 3542 1 2244444443 25899999863
Q ss_pred cccccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeE
Q 005432 618 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 672 (697)
Q Consensus 618 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 672 (697)
-+.... +..+... ...++-++-+.|+|||++++--.... ++++++.....|.-.
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 221100 0000011 23678888999999999998543333 677777776554433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.047 Score=58.36 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCcccccccccccCCCCCCccccccccCccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
+|+|||||+|--|.+|... .+. .+|+-+|-. .-|.++ -.-|+.-++.-.+.-|+..+.+||+|=++--.-..
T Consensus 113 ~ilDlGTGSG~iai~la~~-~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE-GPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhh-CcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCC
Confidence 9999999999999999873 333 455555544 444433 23454222222223455544589998775432111
Q ss_pred c------------------CCCCCCCc---chhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCc-eeEEeeeccCC
Q 005432 623 S------------------GHRHRCST---LDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW-DARVIEIESNS 680 (697)
Q Consensus 623 ~------------------~~~~~c~~---~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W-~~~~~~~e~~~ 680 (697)
. + ...++ ..++-+..++|+|||++++.-....-+.++++.....+ ........-.+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~--g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVG--GGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred cccccChhhhccCHHHHHcc--CccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 0 1 11222 27788899999999999998776677888888888885 22222112234
Q ss_pred CccEEEEEc
Q 005432 681 DERLLICQK 689 (697)
Q Consensus 681 ~~~~li~~K 689 (697)
.+++.+.++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666554
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.14 Score=51.74 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCC-CCCCC--CccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~L-Pfpd~--sFDlV~~ 353 (697)
.+.++||+=+|+|.++...+.+|. ..++.+|.+...++..++. + ....+...|+... +-... .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 358999999999999999999974 4678999999988777654 3 2344444554422 22222 4999998
Q ss_pred cccccccc-ccHHHHHHH--HHHhccCCeEEEEEeC
Q 005432 354 ARCGVDWD-QKDGILLLE--VDRVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~-~d~~~~L~E--l~RvLKPGG~Lvis~p 386 (697)
--- ++.. -+....+.. -..+|+|+|.+++...
T Consensus 121 DPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 754 3321 111233333 5678999999999765
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.011 Score=63.15 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=70.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh-hHhccCcc----cccccccccCCCCCCccccccccCcccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP-MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~-~i~~RGli----g~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+|||+|||-|+++-++.+ .++|=|.-|.-..+. ...+ -|-++|+- -.++||...=.+ ||=|=+-+.|.+
T Consensus 75 ~lLDiGCGWG~l~~~aA~-~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDrIvSvgmfEh 149 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAE-EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDRIVSVGMFEH 149 (283)
T ss_pred EEEEeCCChhHHHHHHHH-HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cceeeehhhHHH
Confidence 799999999999999987 357766666554433 2222 46779996 447777665444 787877777776
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. .-...+++-=+.++|+|||-+++.
T Consensus 150 vg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 150 VG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 53 355668889999999999999974
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.099 Score=55.84 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCchHHHHHhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCcEEEeecccCCCCCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~-~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
+++|+=||||.=-+|..+.. +....+.|+++|.+++.++.+++- +....+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999998777666554 322456789999999999887531 2345677777776665556899999875
Q ss_pred cccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 356 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 356 ~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. ..+. .+-..+|..+.+.++||..+++..
T Consensus 201 l-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 L-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred h-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4 3322 244689999999999999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.087 Score=59.69 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC---CCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp---d~sFDlV~~~ 354 (697)
+..+|||+=||.|.|+..|+++ ...|+|+|+++++++.|++. ++ ++.+..++++...-. ...||.|+.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 3479999999999999999976 46799999999999887643 43 467777777776532 3578999864
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
--. .--...+++.+. .++|-..+++|..+
T Consensus 370 PPR---~G~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 370 PPR---AGADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CCC---CCCCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 210 001124455444 46777888888754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.013 Score=63.14 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=62.8
Q ss_pred eEEEecccCch--hhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccc-cccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~-~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||+| +.||+++-. +.|...-+=|..-.++..-+-.-|+-.-+. ...+.++. ..||+|=|+=+.....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL~ 239 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVLL 239 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHHH
Confidence 49999999999 556777653 345544443332222222233344422111 02233343 7899999855554443
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCceeEEe
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 674 (697)
.++=++.+.|+|||++|++.-. +..++|.+..+. .|++...
T Consensus 240 ---------~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 240 ---------ELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---------HHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred ---------HHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 4666789999999999997321 223444444455 6665444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.012 Score=59.93 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-..|||+|||.|-+..+|.+. .+- .+++-+|-. ..+..+-++ ++-=...|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 356999999999999999762 111 234444543 555555443 22111234344554 3899999999998876
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
. .-.+..++-||-|++ +++++|.
T Consensus 119 ~----p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N----PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C----HHHHHHHHHHHHhhc--CcEEEEE
Confidence 4 234567889999998 5788874
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.013 Score=57.79 Aligned_cols=142 Identities=22% Similarity=0.331 Sum_probs=68.4
Q ss_pred CCCceeEEEecccCchhhhhhhhccC---CCeEEEEeecCCCCCchhhHhccCcc---cccccccccCCCCCCccccccc
Q 005432 542 PYNMVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~~~l~~i~~RGli---g~~~~~~e~f~typrtyDl~H~ 615 (697)
+.+.-.+|||+||+-|||..++++.. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-|
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 34568999999999999999999854 33555666655333222222 2211 1112222333211257999999
Q ss_pred cCccccccC--CCCCCCcchhhh---hhcccccCCcEEEEE-----cCHHHHHHHHHHHhhcCceeEEeeecc---CCCc
Q 005432 616 EGLLSLESG--HRHRCSTLDIFT---EIDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDE 682 (697)
Q Consensus 616 ~~~~~~~~~--~~~~c~~~~~l~---E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~---~~~~ 682 (697)
+..+..-.. ..+--.+..++- =+-..|+|||.+|+. +..+++..++..=+ ++.++.... .+.|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~----~v~~~Kp~~sr~~s~E 173 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFS----KVKIVKPPSSRSESSE 173 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHH----HEEEEE-TTSBTTCBE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCe----EEEEEECcCCCCCccE
Confidence 885432210 000001111222 223569999988874 22344444444222 244444332 2357
Q ss_pred cEEEEEc
Q 005432 683 RLLICQK 689 (697)
Q Consensus 683 ~~li~~K 689 (697)
..+||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 7788764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.018 Score=56.57 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=65.9
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---ccccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|||+|||+|-.+.+|... .+-.. |+-+|-. .-+..+.+ -|+ --+.+|+.+.++ +..||+|=++-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~-~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR-GPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT-STCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred CCeEEEecCChHHHHHHHHHh-CCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 456999999999999999873 34433 2333332 33333322 232 234567777666 48999998865
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEE--EEcCHHHHHHHHHHHh
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTT 665 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i--~~d~~~~~~~~~~~~~ 665 (697)
-|..-. ......+..++-+.=++|+|||.++ ++.....-..++++..
T Consensus 107 P~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 543211 0012335678889999999999774 4544433333444433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.014 Score=59.39 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=61.4
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccccccccccCCCCCCccccccccCccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
-.+|||+|||.|.|+.+|.+. .. .|+=+|.. +.+..+.+|- +..-..-.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 468999999999999999863 21 33444443 4555554442 10001111222222347899998776665
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
++. ...+..++-++.|+++|++++.+...
T Consensus 131 ~~~----~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP----ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC----HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 542 23456789999999999888887543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.024 Score=61.25 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=66.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|... .+. .+|+-+|-. ..+..+-+ .|+ |- +..|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999863 232 245555543 44443332 344 22 2345555554 36899999863
Q ss_pred cccccc------------------CCCCCCC-cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhc
Q 005432 618 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 667 (697)
Q Consensus 618 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 667 (697)
-+.... +..+... ...++-+.-++|+|||++++--..+ .+++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 221110 0000001 2367888999999999999853222 33466655543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.0069 Score=54.34 Aligned_cols=96 Identities=19% Similarity=0.100 Sum_probs=38.8
Q ss_pred EEeCCCCchHHHHHhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CcEEEeecccCC-C-CCCCCccEEEeccccc
Q 005432 288 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL-P-YPSLSFDMLHCARCGV 358 (697)
Q Consensus 288 LDIGCGtG~~a~~La~~g~~~--~sV~gvD~S~---~ml~~A~ergl--~~~~~~~da~~L-P-fpd~sFDlV~~~~~ll 358 (697)
||||+..|..+..+++.--.. ..++++|..+ ...+..++.++ .+.+...+.... + +++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999988887642112 3689999988 33344443333 344555443321 1 33578999997643
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|-.+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 323444568899999999999999865
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.03 Score=59.89 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcE-EEeecccCC-C-CCCCCccEEEe--
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAM-IGSFASKQL-P-YPSLSFDMLHC-- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~-~~~~da~~L-P-fpd~sFDlV~~-- 353 (697)
+..+|||+.++.|.-+.++++.-.....+++.|.+..-+....+ .|+... ....|+... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 45789999999999999998874445679999999987765543 355443 333555544 1 23346999995
Q ss_pred --ccc-ccccccc---------H-------HHHHHHHHHhc----cCCeEEEEEeCC
Q 005432 354 --ARC-GVDWDQK---------D-------GILLLEVDRVL----KPGGYFVWTSPL 387 (697)
Q Consensus 354 --~~~-llh~~~d---------~-------~~~L~El~RvL----KPGG~Lvis~p~ 387 (697)
+.. .+...++ . .++|....+.+ ||||+++.++-.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 221 1111111 1 25789999999 999999999863
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.027 Score=56.97 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=71.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-----CchhhHhccCcccccccccccCC---C-C-CCccccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFVGVLHDWCEAFP---T-Y-PRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-----~~l~~i~~RGlig~~~~~~e~f~---t-y-prtyDl~H~~~ 617 (697)
.+||+|||.|.|..+|....-+. |++=++-. ..+.-+..+||-.+.--.+.+.- . . |.+.|.||-..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 89999999999999998643333 33333332 34456667787333333333322 1 1 47888887632
Q ss_pred ccccccCCC--CCCCcc-hhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhc--CceeE
Q 005432 618 LLSLESGHR--HRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 672 (697)
Q Consensus 618 ~~~~~~~~~--~~c~~~-~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 672 (697)
- ..|-..+ +|..+. ..|-++-|+|+|||.+.++ |..+..+.+.+..... .++..
T Consensus 97 P-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 P-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred C-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 1232111 244443 7788999999999999985 7777777777776664 55544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.057 Score=54.02 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc--ccccc-cccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--ig~~~-~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|+|+|||.|.++..+....... .|+-+|-. ..+..+- +.|+ +-+++ |-.+.++..+-.+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 369999999999988775321111 22223321 2222221 1233 11111 1111111111224554431
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcC
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 668 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~ 668 (697)
....+..++-++-|+|+|||++++-.. .+.+.++.+..+.+.
T Consensus 117 --------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 117 --------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred --------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 113456899999999999999998753 334455555555543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.11 Score=57.85 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCCCccEEEeccccccccccHH--------------------------------------HHHHHHHHhccCCeEEEEE
Q 005432 343 YPSLSFDMLHCARCGVDWDQKDG--------------------------------------ILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 343 fpd~sFDlV~~~~~llh~~~d~~--------------------------------------~~L~El~RvLKPGG~Lvis 384 (697)
||+++.+++|++.+ +||..... .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 89999999999998 88874211 1233334567899999998
Q ss_pred eCCCC
Q 005432 385 SPLTN 389 (697)
Q Consensus 385 ~p~~~ 389 (697)
..+..
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 87653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.0035 Score=55.76 Aligned_cols=93 Identities=26% Similarity=0.268 Sum_probs=56.0
Q ss_pred EEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----c-cc-ccccccccCCCCCCccccccccCc-cc
Q 005432 549 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VG-VLHDWCEAFPTYPRTYDLVHAEGL-LS 620 (697)
Q Consensus 549 vmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l-ig-~~~~~~e~f~typrtyDl~H~~~~-~~ 620 (697)
|||+|||.|....+|.+.-+.--...+.-.|-. ..|..+.++. + += +..|. +.++..-.+||+|=|+++ +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 799999999999999862100011345555544 5666565555 2 11 11222 223333369999999777 55
Q ss_pred cccCCCCCCCcchhhhhhcccccCCc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEG 646 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G 646 (697)
+ - ..-.+..+|=++=|+|||||
T Consensus 80 ~-~---~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 H-L---SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp G-S---SHHHHHHHHHHHHHTEEEEE
T ss_pred C-C---CHHHHHHHHHHHHHHhCCCC
Confidence 5 3 44556789999999999998
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.027 Score=56.99 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=48.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc--ccc-ccccccCCCCC--Ccccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVL-HDWCEAFPTYP--RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli--g~~-~~~~e~f~typ--rtyDl~H~~ 616 (697)
..|||+|||+|.+++.|.+... .|+-++.. +-+..+-++ |+- -+. .|. +.++| .+||+|.++
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVT 151 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEc
Confidence 4799999999999987765211 23333322 223322221 331 111 121 22232 689999986
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..+.. +.-++-+.|+|||.+++.
T Consensus 152 ~~~~~------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAAPE------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCchh------------hhHHHHHhcCCCcEEEEE
Confidence 54432 233456899999999985
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.35 Score=49.47 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=72.4
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCC-CccEEEecccccc
Q 005432 287 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSL-SFDMLHCARCGVD 359 (697)
Q Consensus 287 VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~-sFDlV~~~~~llh 359 (697)
|.||||--|.+..+|++++ ....++++|+++..++.|++. ++. +.+..+|... +++.+ ..|.|+.+++.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999997 456789999999999888754 433 3444445322 23333 3788887765211
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
-....|.+....++..-.|++.-. .....++.+....+|.+..+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~--------------~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPN--------------THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEES--------------S-HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCC--------------CChHHHHHHHHHCCCEEEEe
Confidence 124567777777777667777533 22345677888889988754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.02 Score=61.49 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------Cc--ccccccccccCCCCCCcc----c-c
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF--VGVLHDWCEAFPTYPRTY----D-L 612 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Gl--ig~~~~~~e~f~typrty----D-l 612 (697)
.+|||+|||.|.++..|++.-.. .-+|++.|-. .-|..+.++ ++ .++..|.++.++. |..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEE
Confidence 46999999999999999863111 2467888876 666666553 22 3556677665432 2333 2 3
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.+...|.... +-....+|-++=+.|+|||.+++.
T Consensus 142 ~~~gs~~~~~~----~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT----PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33333333322 223447899999999999999973
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.13 Score=52.22 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+++|||+|+|.|..+...+..|. ..+...|+.+...+.. ...++.+.+...+. -..+..||+|+...+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEeeceec
Confidence 358999999999999888877763 3467778776655433 23344555543332 23677899999998855
Q ss_pred cccccHHHHHHHHHHhccC-CeEEEEEeCCCCh
Q 005432 359 DWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNP 390 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKP-GG~Lvis~p~~~~ 390 (697)
.+. ...+++. +.+.|+. |-.+++-+|...+
T Consensus 154 ~~~-~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHT-EADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cch-HHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 543 2345666 5555555 5555566665443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.47 Score=52.77 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=83.6
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCce---------------------------
Q 005432 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLT--------------------------- 308 (697)
Q Consensus 256 ~yd~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~--------------------------- 308 (697)
.+++.+..-+.++..+-...+ |. ....++|==||+|++....+-.+...
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 344555556666665544443 22 22589999999999987776553210
Q ss_pred ----e-------EEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc-cccccc--HH---
Q 005432 309 ----M-------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--DG--- 365 (697)
Q Consensus 309 ----~-------sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l-lh~~~d--~~--- 365 (697)
. .++|.|+++.+++.|+.. |+. +.|.++++..++-+-+.+|+|+|+--. .-.... .+
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 1 377999999999988743 554 667888998887554799999998431 111111 12
Q ss_pred -HHHHHHHHhccCCeEEEEEeC
Q 005432 366 -ILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 366 -~~L~El~RvLKPGG~Lvis~p 386 (697)
.+...+++.++--+.++|+..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 345566677777788888876
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.2 Score=53.19 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=59.1
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCC--cEEEeecccCCC--CC----CCCcc
Q 005432 283 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP--YP----SLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCG--tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~--~~~~~~da~~LP--fp----d~sFD 349 (697)
+.+..|||||| |-..+...++...+...|.-+|+.+..+..++.. ... ..++.+|..+.. +. .+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 57899999999 4445666766645667899999999888755432 233 456666654421 00 11222
Q ss_pred -----EEEeccccccccc---cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 350 -----MLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 350 -----lV~~~~~llh~~~---d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.|+...+ +|+.+ ++..++..+...|.||.+|+|+.....
T Consensus 148 ~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 3334444 66664 457899999999999999999987654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.069 Score=50.11 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
++||||||.|.++..+++.+ ...+++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 334799999999998877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.041 Score=56.43 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=55.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccc--------------cccccccCCCCC----C
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGV--------------LHDWCEAFPTYP----R 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~--------------~~~~~e~f~typ----r 608 (697)
..|||.|||.|-.|.+|.+.+..|.-+=++|.--. + +.-+.|+-.. +.-+|--|-.++ -
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~-~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE-Q--FFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH-H--HHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 48999999999999999998778887777665221 0 1112232110 111222221111 2
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+||+|=...+|.+.. ...-..++-.|-|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~----~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP----EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 455554444443332 12223578889999999997444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.14 Score=51.73 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+.+.|+|+|+|.++...++. .-.|++++.++.....|.+. | .+..++.+|+....| ...|+|+|...--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 68999999999988777665 34589999999888888765 1 356677788887777 46899999754111
Q ss_pred cccc-HHHHHHHHHHhccCCeEEEE
Q 005432 360 WDQK-DGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 360 ~~~d-~~~~L~El~RvLKPGG~Lvi 383 (697)
.... .-.++..+...||-.+.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 22467777778888888773
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.16 Score=56.05 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 340 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~ 340 (697)
..|||+=||.|.++..|++. ...|+|+|.++++++.|++. ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 37999999999999999987 35699999999999888643 44 45666555443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.069 Score=52.78 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=44.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCC-ccEEEec
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 354 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~s-FDlV~~~ 354 (697)
..|+|+.||.|..+..+++.. ..|+++|+++..++.|+.. |+ ++.+.++|..++. +..+. ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999873 4689999999999888754 44 4567777755432 22122 8999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.34 Score=52.39 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHH----HcCC---------------------CcEE-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERGL---------------------PAMI- 333 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml---~~A~----ergl---------------------~~~~- 333 (697)
...+||==|||.|.++..|+..|+. +.|.+.|--|+ .++. ..+- ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 4467999999999999999988754 57778887775 2332 1110 0000
Q ss_pred --Ee--------------ecccCC---CCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhh
Q 005432 334 --GS--------------FASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 394 (697)
Q Consensus 334 --~~--------------~da~~L---Pfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~l 394 (697)
.. +|..+. +-..++||+|+..+. +.-..+.-..|..|..+|||||+++=..|....-..-
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 00 010000 011246999987754 5545556679999999999999999777754331110
Q ss_pred hh----HHhhhhhhhhhhhhhccceEEeeec
Q 005432 395 RN----KENQKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 395 r~----~e~~~~W~~l~~la~~~~w~ll~~~ 421 (697)
.. ....-..+.+..+++..+|+++.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 00 0112356778888999999998765
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.039 Score=57.47 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=67.5
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccccccccc----cCCCCC-CccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCE----AFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~~~~~e----~f~typ-rtyDl~H~~~~~~ 620 (697)
.|||+|||-|.++-.|...+ -+|.-.|.. ..+.++-.+.+ -|+.-+|.. .+-. . -+||.|=|..+..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-~~~~FDvV~cmEVlE 135 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG-----ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-AGGQFDVVTCMEVLE 135 (243)
T ss_pred eEEEecCCccHhhHHHHHCC-----CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-cCCCccEEEEhhHHH
Confidence 48999999999999999855 477777876 67777665444 233323321 1111 0 4799999988888
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+.. +...++.+..+.+||||-++++.-
T Consensus 136 Hv~------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVP------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 764 344699999999999999999753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.67 Score=48.81 Aligned_cols=128 Identities=18% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|+|||||.=-++....... ....++++|++..++++... .+++..+...|...-+ +....|+++..-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-L 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-H
Confidence 36899999999999999887653 34589999999999987653 3556666666644433 3457999998766 5
Q ss_pred cccccH--HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhh-hhhhhhhhhccceEE
Q 005432 359 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR-WNFVRDFVENLCWEL 417 (697)
Q Consensus 359 h~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~-W~~l~~la~~~~w~l 417 (697)
+..+.. ...++-+.. ++ .=.+++|.|....-+ |.+..... -..++.++...+|..
T Consensus 182 p~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~g--R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLGG--RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHSTTHHHHHHHH-SC-ESEEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhcchHHHHHHH-hC-CCeEEEecccccccc--CccccccCHHHHHHHhcccCCcee
Confidence 544322 122332333 32 226677777543211 22222222 245677777788874
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.32 Score=53.55 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCcEEEeecccCC-CCCCCCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--------l~~~~~~~da~~L-Pfpd~sFD 349 (697)
+.++||=+|.|.|..+..+.+. ....+|+-+|.++.|++.++.. . ..+.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4578999999999999999876 2467899999999999988732 1 1233343343322 23446899
Q ss_pred EEEeccccccccccH-----HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 350 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~-----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.++++.-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9986532 1111111 256777899999999999986544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.2 Score=52.76 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=81.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC----CchhhHh----ccC--cccccccccccCCCCCCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL----DRG--FVGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~----~~l~~i~----~RG--lig~~~~~~e~f~typrtyDl~H~ 615 (697)
...|+|+|||.|.-+=+|.+...++=+.-| -.+.. .+-.+.+ ||- +=+=+..|+.++.. .+||+|=|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~V-Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGV-EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEE-EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEe
Confidence 889999999999877777653122322211 11111 1111111 221 12334567777776 57999999
Q ss_pred cCccccccCC------------CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEE
Q 005432 616 EGLLSLESGH------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 673 (697)
Q Consensus 616 ~~~~~~~~~~------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 673 (697)
+--|-.-... ...|.+++++-=--++|+|||++.+=-..+.+.++-++++++.|....
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 8765332210 134667777777889999999999998999999999999999998653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.15 Score=57.62 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=53.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---hcc-Cccc----cccccccc-CCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GFVG----VLHDWCEA-FPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---~~R-Glig----~~~~~~e~-f~typrtyDl~H~~ 616 (697)
.+||||+||.||++.+|.+. .+ .-.|+-.|-. ..+..+ ++| |+-- +-.|..+. +..-+.+||.|-++
T Consensus 240 ~~VLDlcag~G~kt~~la~~-~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILEL-AP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 48999999999999988762 11 0123333333 333332 222 4310 11122111 10013689999864
Q ss_pred CccccccCCCC--CC-------C-------cchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRH--RC-------S-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~--~c-------~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
--.|....-++ .+ . -..+|-++=|+|||||.+|++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 32221100000 00 0 126888999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.02 Score=51.63 Aligned_cols=97 Identities=25% Similarity=0.340 Sum_probs=55.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-------ccccccccccCCCCCCccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-------VGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-------ig~~~~~~e~f~typrtyDl~H~ 615 (697)
.|||++||.|.|+.++++.. .-+++=+|-. ..+.++-. .|+ .|=+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHC----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998732 2233333322 11111110 111 3333344445554 88999999
Q ss_pred cCccccccCC--CCCCCcchhhhhhcccccCCcEEEE
Q 005432 616 EGLLSLESGH--RHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 616 ~~~~~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+--|...... ..+-....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8888653210 0112345778899999999999886
|
... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.061 Score=55.87 Aligned_cols=132 Identities=13% Similarity=0.205 Sum_probs=67.4
Q ss_pred ceeEEEecccCchh----hhhhhhccCCCeEEEEeecCCCCCchhhHhccCc---cc-ccccccccCCCC-----CCccc
Q 005432 545 MVRNVLDMNAHFGG----FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGF---VG-VLHDWCEAFPTY-----PRTYD 611 (697)
Q Consensus 545 ~iRnvmDm~~g~g~----Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGl---ig-~~~~~~e~f~ty-----prtyD 611 (697)
.-++|||+|||+|. +|+++.. +-.|.++=+-|....-.-..+-.-|+ |- +..|..+.++.. ..+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 36789999998886 3444432 12344433322111100111222343 11 122333333321 25899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc---------C----H----HHHHHHHH----HHhhcCce
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------T----A----RLIESARA----LTTRLKWD 670 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---------~----~----~~~~~~~~----~~~~~~W~ 670 (697)
+|-++.-=..|. .++-++=|+|||||.+|+-+ . . .....+++ |...=+|+
T Consensus 147 ~VfiDa~k~~y~---------~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 147 FAFVDADKPNYV---------HFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred EEEECCCHHHHH---------HHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 998754433333 56667789999999999621 1 0 12334444 33344565
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005432 671 ARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K~ 690 (697)
+.+... .+.++|+.|+
T Consensus 218 ~~~lp~----gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI----GDGVTLCRRL 233 (234)
T ss_pred EEEEEe----CCccEEEEEe
Confidence 555532 3678888875
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.064 Score=58.33 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCccc--c-cccccccCCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig--~-~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.|||.+||.|+|...+...+. +|+=.|.. ..+..+ -.-|+-. + ..|-. .++.-+.+||+|=++--|
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 799999999999654433222 23333332 222211 1124432 1 12222 233223689999886444
Q ss_pred ccccCC-CC--CCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCc
Q 005432 620 SLESGH-RH--RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 669 (697)
Q Consensus 620 ~~~~~~-~~--~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W 669 (697)
...... .+ ......+|-|+-|+|+|||++++--... .+++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321100 01 1224689999999999999988753322 144566777666
|
This family is found exclusively in the Archaea. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=52.40 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=31.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
-.+.|||||.|.+...|+.. ++..-+.|.++--..-++.++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 35899999999999999887 466778899886555444443
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.6 Score=47.52 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----------HHHHHHHcCC-CcEEEeecccCCCCCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~----------ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~ 352 (697)
..+|+|+=.|.|.++..+...-.....|+++-..+. +-..+++... +..........++ +.+..|+++
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccc
Confidence 489999999999999999876323334555433322 1122222211 1111111111222 223444444
Q ss_pred e--------ccccccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHH--hhhhhhhhhhhhhccceEEeeec
Q 005432 353 C--------ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE--NQKRWNFVRDFVENLCWELVSQQ 421 (697)
Q Consensus 353 ~--------~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e--~~~~W~~l~~la~~~~w~ll~~~ 421 (697)
. ... +| .....++..++++.|||||.+++.++....-..+++.. ++-.-..+...++.-++.+..+.
T Consensus 128 ~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 128 TAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred cchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 3 322 23 33446899999999999999999987554311122221 12222334455666777766553
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.057 Score=55.61 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=57.3
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh-hHhccCccccc--------------ccccccCCCC---C-C
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P-R 608 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~-~i~~RGlig~~--------------~~~~e~f~ty---p-r 608 (697)
.|||.|||.|--|.+|.+.+..|.-+=++|.- +. ++-++|+.... .-+|.-+..+ + -
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~A----i~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELA----VEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHH----HHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 89999999999999999866655555444431 22 23456653221 1122222211 1 2
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+||+|-...+|.+.. ...-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~----~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP----EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 567776666655442 12234688999999999996443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.13 Score=55.39 Aligned_cols=97 Identities=25% Similarity=0.357 Sum_probs=65.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccc-ccc-----ccCCCCCCccccccccCcc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~-~~~-----e~f~typrtyDl~H~~~~~ 619 (697)
=|.|||+|||-|-|.=.|+.. .+-.|+-+=|..- -.+|+-+-+-++|.-. -.. |..|. ..+||+|-|.|++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 479999999999999888864 4545555554433 3344333334443211 011 33455 6899999999998
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-+ |-+-.+.|.++=..|||||-+|+.
T Consensus 193 YH------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 74 445557889999999999999973
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.11 Score=54.90 Aligned_cols=90 Identities=23% Similarity=0.458 Sum_probs=61.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCch-hhHhccCc--ccccccccccCCCCCCccccccccCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHL-PMILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l-~~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
+..++||+|||-|+--+.|... .=.|.-++..-.. ----+||+ +... +|.+. +..||+|-|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-----f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL-- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-----FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL-- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-----cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh--
Confidence 4678999999999998888531 1133334433222 12346887 4433 47643 4569999996665
Q ss_pred ccCCCCCCCcc-hhhhhhcccccCCcEEEEE
Q 005432 622 ESGHRHRCSTL-DIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~-~~l~E~dRiLRP~G~~i~~ 651 (697)
+||.-. .+|-+|-+.|+|+|.+|+.
T Consensus 162 -----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578755 6778999999999999983
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.23 Score=53.68 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=62.1
Q ss_pred ceeEEEecccCchhhhhhhhccC-CCeEEEEeecCCC-CCchhhHhc----cCcccccccccccCCCCC--Ccccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAE 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~-~~~l~~i~~----RGlig~~~~~~e~f~typ--rtyDl~H~~ 616 (697)
.-+||||+|||+|=+|-|.++.+ .+|. -+|- +-.+.++.| -|+--+.+.-+-.-++.| +.||+|=|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~-----g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVV-----GVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEE-----EecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 36899999999998876655421 1222 2221 123333333 111111122222222333 489999884
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCceeEEee
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~ 675 (697)
=+=.-. ..+.=++-|.|+|||++|++.-- +..+.|.+-..+=.|++.-+.
T Consensus 237 ILA~vl---------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 237 ILAEVL---------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hhHHHH---------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 321111 13445678999999999998632 123444554545567766553
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.21 Score=52.68 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEE------EEeecCCC-CCchhhHhcc----Ccccc-cccc-c-----ccCCCCCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWV------MNVVPTIG-TNHLPMILDR----GFVGV-LHDW-C-----EAFPTYPR 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwv------mnv~p~~~-~~~l~~i~~R----Glig~-~~~~-~-----e~f~typr 608 (697)
=.||||.||+|--|=.+++. |=. -+|+-.|- +++|.+...| ||-.- ---| | .|||+ .
T Consensus 102 m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--D 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--C
Confidence 68999999999888777741 221 23333343 3677766555 44211 1123 2 35555 8
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+||+.--+.-.-.+. .++..|-|+-|+|+|||-|.+=+
T Consensus 177 s~D~yTiafGIRN~t------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999876543333222 36689999999999999988743
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.13 Score=58.39 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||||||.|+++.+|.+.-.+- ..|+-.|-. +.+..+-+ .|+- -+-.|..+....++.+||+|=++--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 579999999999998887521010 123333332 33333322 2431 1234444433345578999865432
Q ss_pred cccccC---------CCCCCCc-------chhhhhhcccccCCcEEEEE
Q 005432 619 LSLESG---------HRHRCST-------LDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~---------~~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 651 (697)
.|.... ..+.-.+ ..+|-++=|+|||||.+|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111100 0000111 24788889999999999975
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.24 Score=43.18 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred EEecccCchh--hhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-------cccccccccc-cCCCCC-Ccccccccc
Q 005432 549 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------FVGVLHDWCE-AFPTYP-RTYDLVHAE 616 (697)
Q Consensus 549 vmDm~~g~g~--Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-------lig~~~~~~e-~f~typ-rtyDl~H~~ 616 (697)
++|+|||.|. +.+.+.. ....+.. .+.. ..+.....+. +-.+..+... .++.-. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG--RGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCC--CCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 5555543 2223333 2222 2222222111 1233334433 133322 389999 76
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
.....+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~---~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL---P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC---C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 6555443 2 568999999999999999987543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.22 Score=52.56 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=53.0
Q ss_pred EEEecccCchhhhhhhhccCC-CeEEEEeecCCCC-CchhhHhc----cCc--cccc-ccccccCCCCCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~-~~~~e~f~typrtyDl~H~~~~ 618 (697)
.||||+||.|+++.+|.+.-. .- .|+-.|-. .-+..+-+ -|+ |-++ +|- ..++.....||.|-++--
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAP 149 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCC
Confidence 599999999999987764200 11 24444443 33332222 243 1222 222 223332346999876433
Q ss_pred ccccc---CC------CCCCC-------cchhhhhhcccccCCcEEEEE
Q 005432 619 LSLES---GH------RHRCS-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~---~~------~~~c~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.|..- .. ...-. -..+|-++=++|||||++|++
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22210 00 00000 125888899999999999997
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1 Score=49.54 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--HcCCC-----cEEEeecccCCCCC-CCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ERGLP-----AMIGSFASKQLPYP-SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~--ergl~-----~~~~~~da~~LPfp-d~sFDlV~~~ 354 (697)
.+.+|||+|.|+|.-+..+-.--..--+++-++.|+..-+..- ++++. ..-......+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4577999999999765555332111223445566665433321 22211 11111222344443 2367777766
Q ss_pred ccccccccc-H-HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVDWDQK-D-GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d-~-~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.-+++.... + ...++.+..++.|||.|+|.+++..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 554443311 1 2378889999999999999998653
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.69 Score=50.83 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
++.+|+=+|+| .|..+..+++.- ..+|+++|.+++-++.|++-|....+...+.....--.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 34788888877 566788888742 3779999999999999999886655542232223222234999986522
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...+....+.||+||.+++....
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 35788889999999999998765
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.41 Score=48.96 Aligned_cols=134 Identities=21% Similarity=0.325 Sum_probs=85.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchh----hHhccCc----cccccccccc-------CCCCCCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF----VGVLHDWCEA-------FPTYPRTYD 611 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~----~i~~RGl----ig~~~~~~e~-------f~typrtyD 611 (697)
.||.+++|+|--|+++.. ..|-+ ---|.|-. +.++ -+-+-|+ ..+.-|-+.+ -+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 799999999987776664 24432 34677765 3323 2445665 2333333322 334678999
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE------------------------cC---HHHHHHHHHHH
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR------------------------DT---ARLIESARALT 664 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------d~---~~~~~~~~~~~ 664 (697)
.|-|..++.--. ....+-++-+.-|+|+|||.+++- |. ..-++.|.++|
T Consensus 105 ~i~~~N~lHI~p----~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHISP----WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhcC----HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 999988753211 112357899999999999999972 11 13367888999
Q ss_pred hhcCceeEEeeeccCCCccEEEEEc
Q 005432 665 TRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 665 ~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
.+-..+.... ++=-...++||++|
T Consensus 181 ~~~GL~l~~~-~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEED-IDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcc-cccCCCCeEEEEeC
Confidence 9877765432 12122588999997
|
The function of this family is unknown. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.72 Score=51.70 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=73.3
Q ss_pred ccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCcE-EEeecccCCC---CCCCCccE
Q 005432 279 FILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAM-IGSFASKQLP---YPSLSFDM 350 (697)
Q Consensus 279 l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~~-~~~~da~~LP---fpd~sFDl 350 (697)
+.|..+.+|||+.+-+|.=|.+++..--.+..|.+.|.+..-+.... +.|+... +...|...+| |+. +||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 34557789999999999877777654223456899998877765443 4466544 3455666555 555 8999
Q ss_pred EE----eccccccc-------cc----------cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 351 LH----CARCGVDW-------DQ----------KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 351 V~----~~~~llh~-------~~----------d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
|. |+...+.. .. -..++|......+++||+|+.++-...
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 98 44411111 00 013578889999999999999986543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.25 Score=51.39 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=61.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc---c----Ccccc-cccccccCCCCCCcccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD---R----GFVGV-LHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~---R----Glig~-~~~~~e~f~typrtyDl~H~~ 616 (697)
=++|||+|||.|+|.-.|++. .+ -.|+-+|.. ++|---+. | +..-+ +.+|-+-.+ |++-|+
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~--ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~------d~~~~D 145 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK--GA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP------DFATFD 145 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc--CC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC------Cceeee
Confidence 358999999999999999873 21 123333332 33332111 1 22111 235555432 444444
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEE-------------------EcCH---HHHHHHHHHHhhcCceeEEe
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-------------------RDTA---RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-------------------~d~~---~~~~~~~~~~~~~~W~~~~~ 674 (697)
-.|.... .+|-.|.++|+| |.+|+ +|+. .+++++...+.++.|++.-.
T Consensus 146 vsfiS~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 146 VSFISLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred EEEeehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 3343222 356677777777 66663 3432 56777888888888886544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.41 Score=54.09 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=55.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH---hcc-Cc-c-cccccccccCCCC-CCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GF-V-GVLHDWCEAFPTY-PRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i---~~R-Gl-i-g~~~~~~e~f~ty-prtyDl~H~~~~~ 619 (697)
.|||+|||.|+++.+|.+.... -.|+-.|-. ..+..+ ++| |+ + =+.+|-.+....+ +.+||.|=++--.
T Consensus 247 ~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 247 RVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred EEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 6999999999999998863211 123333433 333333 222 33 1 1223433322222 3689999854432
Q ss_pred ccccC-CCC--------C-------CCcchhhhhhcccccCCcEEEEEc
Q 005432 620 SLESG-HRH--------R-------CSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 620 ~~~~~-~~~--------~-------c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... .++ . .....+|-+.=++|+|||.+++..
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22100 000 0 011257888999999999999863
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.31 Score=55.74 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=41.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASK 339 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~ 339 (697)
..+||+-||||.++..+++. +..|.|+++++..+..|... |+ ++.|.++-++
T Consensus 385 k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 78999999999999999876 56799999999999888653 33 4556655333
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.25 Score=53.89 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=46.9
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHh----ccCcc---cccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMIL----DRGFV---GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~----~RGli---g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.+++.|.+.-.. --| +-++-. .-+..+- ..|+- =+..|-.+..+. ...||+|.++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~V---vgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLV---VSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEE---EEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 37999999999999988752111 012 222222 2222221 23431 112232222222 24699998742
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-.. .+.-.+-|.|+|||.+++-
T Consensus 158 g~~------------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 GVD------------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred chH------------HhHHHHHHhcCCCCEEEEE
Confidence 221 2333456789999998884
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.5 Score=49.14 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=72.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCC--CCchhhHhccCc--cccc-ccccccCCCCC-C-ccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--TNHLPMILDRGF--VGVL-HDWCEAFPTYP-R-TYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~--~~~l~~i~~RGl--ig~~-~~~~e~f~typ-r-tyDl~H~~~~~ 619 (697)
..+++||||.|.|-++|...+=.+-..-|=+... -.-+.-|-+.|| |-++ +|=-+-+..++ . +.|-|+- .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 4899999999999999987432232222222221 144556777887 4444 22233344443 3 7888776 45
Q ss_pred c-cccCCCC--CCC-cchhhhhhcccccCCcEEEEE-cCHHHHHH-HHHHHhh
Q 005432 620 S-LESGHRH--RCS-TLDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 666 (697)
Q Consensus 620 ~-~~~~~~~--~c~-~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~-~~~~~~~ 666 (697)
. .|...+| |-- -...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3 3554334 333 337788899999999999996 55555555 5554444
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.43 E-value=2.9 Score=44.14 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH--HHHHH--------cCCCcEEEeecccCC---CCCCCC-cc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLE--------RGLPAMIGSFASKQL---PYPSLS-FD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml--~~A~e--------rgl~~~~~~~da~~L---Pfpd~s-FD 349 (697)
..+||++|+|+|..+...+... ...+...|...... +.... .|..+.+..++-... .+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4679999999998777776642 34456666654332 22211 122233322221111 111122 99
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|+++.|.++ ....+.++.-+...|-.+|.+++..+..
T Consensus 165 lilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999444 5566788999999999999777776643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.68 Score=47.50 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=53.2
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHH-HHHc---CCCcEEEeecccCCC-------C-CCCCc
Q 005432 284 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQL-TLER---GLPAMIGSFASKQLP-------Y-PSLSF 348 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~-A~er---gl~~~~~~~da~~LP-------f-pd~sF 348 (697)
++.|+|+|.=.|..+..+++. -.....|.++|+....... +.+. .-.+.+.+++..... . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 489999999998877766542 1134679999995433322 2222 135566666654332 1 11233
Q ss_pred cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 349 DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+|+- .+ .|..++..+.|+....++++|+|+++.|..
T Consensus 113 vlVil-Ds-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 113 VLVIL-DS-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEEE-SS-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred eEEEE-CC-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 34443 33 555567778888899999999999997754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.2 Score=47.08 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----C-c----cccc-ccccccCCCCCCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-F----VGVL-HDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----G-l----ig~~-~~~~e~f~typrtyDl~ 613 (697)
-++||++|||.|+++..+++. .++- +|+-++-. +.+..+-+. | + +-+. .|-.+-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 458999999999999888752 2222 23333322 222221110 1 0 1111 12212122335789999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
=++.... ... ....-....+-.+-|+|+|||.+++.
T Consensus 150 i~D~~~~-~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDP-VGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCC-CCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 7654321 110 00111234556788999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.1 Score=47.30 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=65.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----C-CC-CCCCccEEEecc
Q 005432 284 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----L-PY-PSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----L-Pf-pd~sFDlV~~~~ 355 (697)
..+||.+|||. |..+..+++.. ....+++++.+++.++.+++.+ ...+....... + .+ ....+|+|+-.-
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 47899999987 88888888762 1235889999999999998873 12222111110 1 12 234699998642
Q ss_pred cc--------------ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CG--------------VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~l--------------lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ++-..+....+.++.+.|+|+|.+++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 01112345688999999999999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.09 E-value=3.8 Score=42.15 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=72.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCcEEEeec
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFA 337 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~d 337 (697)
.+...++..+..+.. .+.-..+.+||=+|+-+|....+++.-- ....+++++.|+.+. ..|.+|. ++.-...|
T Consensus 56 p~RSKLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~D 132 (231)
T COG1889 56 PRRSKLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILED 132 (231)
T ss_pred cchhHHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cceeeecc
Confidence 333444444433222 2233456899999999999999988752 234589999998764 4555542 22222234
Q ss_pred ccCCC----CCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005432 338 SKQLP----YPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 338 a~~LP----fpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
+ +.| +--+..|+|++--+ .++. +-+..++...||+||+++++.-
T Consensus 133 A-~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 133 A-RKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred c-CCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 3 233 11245899887533 2333 4578889999999998887753
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.51 Score=53.52 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=55.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCC-CCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPT-YPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~t-yprtyDl~H~~~~ 618 (697)
+||||+||.||.+.+|.+.-.+- -.|+-.|-. .-|..+-+ .|+- -+.+|... ++. .+.+||.|=++--
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDAP 316 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECCC
Confidence 69999999999988776521010 134444544 44443322 2541 22234432 231 2367999876433
Q ss_pred cccccCCCCC----C-----C-------cchhhhhhcccccCCcEEEEE
Q 005432 619 LSLESGHRHR----C-----S-------TLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~~~~~----c-----~-------~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-|....-+.+ . . -..+|-+.=+.|+|||.+++.
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221100000 0 0 125677888999999999986
|
|
| >cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.02 Score=51.93 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=43.9
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCCCCcc
Q 005432 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL 193 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C~~~~ 193 (697)
.+|||.|++.++.++..|+.+..-|. +++++.. |++......++.++.+++++.+...+
T Consensus 33 ~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~l~ 91 (102)
T cd04789 33 ANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIARKQ 91 (102)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888 7777766 44443344555666677776666544
|
Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.73 Score=52.36 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=53.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc---ccccccccccCCCCCCcccccccc--
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE-- 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl---ig~~~~~~e~f~typrtyDl~H~~-- 616 (697)
..||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+ -..|+ --+.+|.....+ +.+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcCC
Confidence 469999999999887765410000 023334433 333322 22354 122234333222 2579998753
Q ss_pred --Ccccc-------ccCCCCCCCc-------chhhhhhcccccCCcEEEEEc
Q 005432 617 --GLLSL-------ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 --~~~~~-------~~~~~~~c~~-------~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... |.. ....+ ..+|-++=|+|||||.+++..
T Consensus 328 csg~g~~~r~p~~~~~~--~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKL--TPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22111 110 00111 158889999999999999974
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.56 Score=50.67 Aligned_cols=141 Identities=12% Similarity=0.131 Sum_probs=73.4
Q ss_pred ceeEEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchh-hHh--ccCccc----ccccccccCCCCCCccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP-MIL--DRGFVG----VLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~-~i~--~RGlig----~~~~~~e~f~typrtyDl~H~ 615 (697)
.-+.|+|+|||-|++.|.++... ...-+.|+=.......+. -.+ +.|+=. ..+|--+..+ -...||+|-|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEE
Confidence 45889999999998865544210 122233332221111111 111 234411 1122223211 1267999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---HHHHHHHHHHhhcCceeEEeeeccCC-CccEEEEEccc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESARALTTRLKWDARVIEIESNS-DERLLICQKPF 691 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~~~~~~~~W~~~~~~~e~~~-~~~~li~~K~~ 691 (697)
. .+..+. +-.-..+|-.+=|.|||||++++|--. .++-.+-....-=.|+....-+-.++ -.-++|.+|+-
T Consensus 202 ~-ALi~~d----k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGMD----KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-cccccc----cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 8 443331 122347889999999999999999521 11111110111117887766544443 46688888864
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.4 Score=47.60 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--cE
Q 005432 260 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--AM 332 (697)
Q Consensus 260 ~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~~ 332 (697)
...|+..+++++...... ....-++||||+|..-.-..|..+- ...+++|.|+++..++.|++. ++. +.
T Consensus 82 R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 468888999988754430 1124689999999875543443331 256799999999999998753 232 22
Q ss_pred EEeec-ccC----CCCCCCCccEEEeccc
Q 005432 333 IGSFA-SKQ----LPYPSLSFDMLHCARC 356 (697)
Q Consensus 333 ~~~~d-a~~----LPfpd~sFDlV~~~~~ 356 (697)
+.... ... +-.+++.||+.+|+--
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE---
T ss_pred EEEcCCccccchhhhcccceeeEEecCCc
Confidence 32211 111 1223468999999966
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.28 Score=47.78 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=35.0
Q ss_pred cccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 600 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 600 ~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.+|.-+.+||+|=+...+..+. +....|-||-|+|+|||.+++-|
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 344554347999998876665443 34578999999999999999865
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.38 E-value=2.1 Score=41.41 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=49.4
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-C-CCCCccEEEecccccccc-----ccH---HHHHHHHHH
Q 005432 310 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDWD-----QKD---GILLLEVDR 373 (697)
Q Consensus 310 sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-f-pd~sFDlV~~~~~llh~~-----~d~---~~~L~El~R 373 (697)
.|.+.|+-+.+++.++++ ++ ++.+...+-+++. + +.+.+|+|+.+...+.-. ..+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 378999999999877755 33 3555554544444 2 335899999886644322 122 268999999
Q ss_pred hccCCeEEEEEeCCC
Q 005432 374 VLKPGGYFVWTSPLT 388 (697)
Q Consensus 374 vLKPGG~Lvis~p~~ 388 (697)
+|+|||.+.+....-
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999988654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.2 Score=45.13 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEecccc
Q 005432 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~~l 357 (697)
..+||..|+| .|..+..+++.. ...++.++.++...+.+++.++...+..-+ ... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 4688888877 477777777752 244788899999998887777543222110 000 123457998875422
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999997654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.35 Score=47.85 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=52.7
Q ss_pred ceeEEEecccCch--hhhhhhhccCCCeEEEEeecCCCCCchh---hHhcc------C-cccccccccccC--CCC-CCc
Q 005432 545 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLP---MILDR------G-FVGVLHDWCEAF--PTY-PRT 609 (697)
Q Consensus 545 ~iRnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~~~l~---~i~~R------G-lig~~~~~~e~f--~ty-prt 609 (697)
.-++||++|||.| |.++|.+. ....|+-+|.+..++ .-.++ + +--.-.+|.++. ... ++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhcc-----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 4579999999888 77777761 112444455443333 22222 1 234456897744 111 368
Q ss_pred cccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 610 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 610 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
||+|-|+.|+-... ..+.++-=++++|.|+|-+++.
T Consensus 120 ~D~IlasDv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYDEE------LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S-GG------GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccchHH------HHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999865432 2345666689999999998874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=2.5 Score=45.67 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=60.5
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEee--cccCCCCCCCCccEEEeccccccc
Q 005432 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~--da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+||=+||| .|.++..+++.- -...++++|.+++.++.+++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 4788888886 455666666551 122578899999999999887754332110 11111111235899875522
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+....+.|++||.+++...
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467888899999999998764
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.1 Score=45.21 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=66.3
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC----Cchh-hHhccCccc----ccccccccCCCCCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLP-MILDRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~----~~l~-~i~~RGlig----~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+|||.|||-|.+--.|++..-+- -++=+|=. ...+ ++-.+|+-- .-.|--.| ...+.-||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~---~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS---KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC---CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 89999999999998888633111 01111111 1122 233345421 11122222 233467999999888
Q ss_pred cccccC--CCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhc
Q 005432 619 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 667 (697)
Q Consensus 619 ~~~~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 667 (697)
|....- ....-.+.-++==++++|+|||.|+|..=.-..+++.+.-..-
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 876531 0011122345666899999999999987665666655544443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=3.6 Score=47.84 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc---------CCC----------
Q 005432 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP---------- 342 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~---------~LP---------- 342 (697)
.+.+|+=+|||. |..+...++.- ...|.++|.+++-++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999996 44555555541 23699999999999999887654221111000 010
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 343 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 343 fpd--~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.+ +.+|+|+.... ..-.+.+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999997744 32222343346999999999999887654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.6 Score=48.00 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHH-HH---------HHcCCCcEEEee-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQ-LT---------LERGLPAMIGSF- 336 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---------------g~~~~sV~gvD~S~~ml~-~A---------~ergl~~~~~~~- 336 (697)
+.-+|+|+||..|..+..+... ..+..+|.-.|.-..--. .. ... .+..+..+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 4568999999999988776543 112345666665322111 00 011 22333222
Q ss_pred --cccCCCCCCCCccEEEecccccccc
Q 005432 337 --ASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 337 --da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
+...=-||+++.|+++++.+ +||.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-
T ss_pred CchhhhccCCCCceEEEEEech-hhhc
Confidence 22222389999999999988 8885
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=1 Score=48.49 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccCC--CCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L--Pfpd~sFDlV 351 (697)
++++||=||-|.|.+....+++ -....+.-+|+....++..++- +..+.+..+|.-.+ ..+.+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5789999999999999888888 4566788888888877766542 22333333343222 1346899999
Q ss_pred EeccccccccccH----HHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.-.. -...+.. +.++..+.+.||+||+++...-.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 97643 2222221 34677899999999999987643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=86.64 E-value=1.4 Score=49.14 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=55.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc--------cC-c----c-cccccccccCCCCCCcc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD--------RG-F----V-GVLHDWCEAFPTYPRTY 610 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~--------RG-l----i-g~~~~~~e~f~typrty 610 (697)
.-++||++|||.|+.+..+++. .++-.+=+|-.+. .-+.++-+ +| + + -++.|-.+-...-++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4579999999999998888862 2232222232222 22222221 11 1 0 11222222222224679
Q ss_pred ccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 611 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 611 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
|+|=++- .........+---...+-.+-|.|+|||.+++...
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998863 22111000111112466788999999999998754
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=86.53 E-value=0.45 Score=47.00 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCCccEEEecccccccc----cc---H---HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 345 SLSFDMLHCARCGVDWD----QK---D---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 345 d~sFDlV~~~~~llh~~----~d---~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++||.+.|..+..|.. .| + ..++.++.++|||||.|+++.|.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 36899999987744432 11 1 378999999999999999999865
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.57 Score=50.05 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=53.8
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc------Cc-----cc-ccccccccCCCCCCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR------GF-----VG-VLHDWCEAFPTYPRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R------Gl-----ig-~~~~~~e~f~typrtyDl 612 (697)
.-++|||+|||.|+++..+++. .++-.+=+|=.+. ..+.++-+. |+ +- +..|-.+-..+-+.+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDE-RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCH-HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3578999999999999998862 2333222222222 222222111 11 11 112211112222468999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|=++. +..+.. ...---...+-++-|+|+|||.+++.
T Consensus 154 Ii~D~-~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDS-TDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 97642 222210 00001134566889999999999986
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.02 E-value=0.68 Score=48.52 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=63.7
Q ss_pred EEEecccCchhhhhhhhccCCC--eEEEEeecCCCCCchhhHh-------ccCcccccccccccC---CCCCCccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMIL-------DRGFVGVLHDWCEAF---PTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~--vwvmnv~p~~~~~~l~~i~-------~RGlig~~~~~~e~f---~typrtyDl~H~ 615 (697)
++|.+|||.|.--=-|++.+.+ +-||.. +. +++-+-+.- .|. -...+|-+.+= |.-+-+.|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666654333 444432 11 112221111 122 23333433322 222389999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
-.++|... .-.|..++-.+-|+|+|||.+++||=
T Consensus 151 IFvLSAi~----pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIH----PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccC----hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999985 35588899999999999999999963
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.5 Score=49.66 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=58.9
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc--c-ccccccccC---CCCCCcccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAF---PTYPRTYDLVHAE 616 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli--g-~~~~~~e~f---~typrtyDl~H~~ 616 (697)
.||||+||.||++.+|.+.-.+- -.|+-.|-. .-+..+-+ -|+- - +-.|-.+.. +..+.+||.|=++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 69999999999998887520000 023333433 33333322 2331 1 112221111 1223689988753
Q ss_pred CccccccCC-CC--------CCC-------cchhhhhhcccccCCcEEEEEc----CHHHHHHHHHHHhh
Q 005432 617 GLLSLESGH-RH--------RCS-------TLDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 666 (697)
Q Consensus 617 ~~~~~~~~~-~~--------~c~-------~~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~~ 666 (697)
--.|....- ++ ... -..+|-++=|+|||||.+|+.. ..+-.+.|+.+++.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 221110000 00 011 2377889999999999999863 22334445554443
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.62 E-value=1.8 Score=49.79 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHhcc-ccccccccCCCEEEEeCCCCchHHHHHhh---cCCceeEEEEecCCHHHHHHHHHcC-----CCc
Q 005432 261 EDYSHQIAEMIGLR-NESNFILAGVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTLERG-----LPA 331 (697)
Q Consensus 261 ~~y~~~l~~lL~l~-~~~~l~~~~~~~VLDIGCGtG~~a~~La~---~g~~~~sV~gvD~S~~ml~~A~erg-----l~~ 331 (697)
..|.+.+.+.+..+ +. . .......|+=+|+|-|-+.....+ .-...+.+++++-++.++-..+.+. -.+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd-~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V 423 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPD-E-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV 423 (649)
T ss_pred HHHHHHHHHHHHhhCcc-c-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCee
Confidence 45555665555433 22 0 111245688899999987654433 2234678999999988876555443 356
Q ss_pred EEEeecccCCCCCCCCccEEEeccccccccccH--HHHHHHHHHhccCCeEEEEE
Q 005432 332 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 332 ~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis 384 (697)
.+...|+..++-|..+.|++++... =.+.++. ...|.-+-+.|||.|..+=+
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSELL-GSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSELL-GSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred EEEeccccccCCchhhccchHHHhh-ccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 6777899999866789999998643 3344443 47899999999999877643
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.46 Score=43.96 Aligned_cols=37 Identities=19% Similarity=0.608 Sum_probs=27.5
Q ss_pred CccEEEecccccccc-----ccH-HHHHHHHHHhccCCeEEEEE
Q 005432 347 SFDMLHCARCGVDWD-----QKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 347 sFDlV~~~~~llh~~-----~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
.||+|+|..+ .-|+ ++. ..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999876 3332 222 46899999999999999995
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators | Back alignment and domain information |
|---|
Probab=85.04 E-value=0.043 Score=49.80 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=41.0
Q ss_pred ccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCchhhhhhccccccccccCCCCc
Q 005432 125 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQE 192 (697)
Q Consensus 125 ~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~~~~~~~~~r~~~~er~C~~~ 192 (697)
.+|||.|++.|+.++..|..+..-|. +++++.. |++.......+.++.+.+++.+...
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~-------~~~~~~~~~~l~~~~~~l~~~i~~l 90 (102)
T cd04775 33 EANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG-------CLAQPHVQAILEERLQSLNREIQRL 90 (102)
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999988888 6777765 4433323344455556666655543
|
Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.7 Score=42.30 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=80.7
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCch--hhhhhhhccCCCeEEEEeecCCCC--
Q 005432 506 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 581 (697)
Q Consensus 506 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~-- 581 (697)
...+.|.+.+-+-...+. .+. .... +++|+|+|-| |.--|++-++. +|+-.++.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~---------------~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLP---------------DFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS----------------CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhc---------------cCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCch
Confidence 446788877766665443 221 1111 6999999865 33334442221 23334432
Q ss_pred --Cchh-hHhccCc--ccccccccccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC---
Q 005432 582 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--- 653 (697)
Q Consensus 582 --~~l~-~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--- 653 (697)
+=|. ++-+=|| +=++|...|. +.++..||+|=| |.=+.+..++--+-+.|+|||.++.-.-
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----------RAVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE----------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe----------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555677 6688888888 777899999987 1334555666667889999999988543
Q ss_pred HHHHHHHHHHHhhcCceeEEe
Q 005432 654 ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 654 ~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.+.++++++-.+.+.++....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeee
Confidence 455555666666666665544
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=84.02 E-value=1.5 Score=47.77 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=52.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-c------cccccc-cccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-V------GVLHDW-CEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-i------g~~~~~-~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.+. +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3799999999999999987433 44555544 55555544421 0 011111 112233358899998888
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
++.++. . -.+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---H-HHHHHHHHHHHhh-cCCEEEE
Confidence 876654 1 1122344445443 4565544
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.87 E-value=4.1 Score=43.67 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=88.3
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cch
Q 005432 506 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL 584 (697)
Q Consensus 506 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l 584 (697)
-+|+.|-+.|-.=.+..+ - .+ +. .++|.|||.|.-+-+|+. ..+ ---|.-+|-. .-+
T Consensus 128 pETEE~V~~Vid~~~~~~--~-~~--------------~~--~ildlgtGSGaIslsll~-~L~--~~~v~AiD~S~~Ai 185 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSE--H-SK--------------HT--HILDLGTGSGAISLSLLH-GLP--QCTVTAIDVSKAAI 185 (328)
T ss_pred ccHHHHHHHHHHHHhhhh--h-cc--------------cc--eEEEecCCccHHHHHHHh-cCC--CceEEEEeccHHHH
Confidence 478899888865332221 1 01 11 799999999999999986 233 1111222221 223
Q ss_pred hhHhc-------cCccccccc--ccccCCCCC---CccccccccCcc--cccc----------------CCCCCCC--cc
Q 005432 585 PMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVHAEGLL--SLES----------------GHRHRCS--TL 632 (697)
Q Consensus 585 ~~i~~-------RGlig~~~~--~~e~f~typ---rtyDl~H~~~~~--~~~~----------------~~~~~c~--~~ 632 (697)
.++-| -|-|++.|. --+.|-+|| .+||+|=++--. +.-. ..+..|. +.
T Consensus 186 ~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 186 KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 33333 455888876 455666666 789998876432 2111 0001111 11
Q ss_pred hhhhhhcccccCCcEEEEE-----cCHHHHHHHHHHHhhcC-ceeEEeeeccCCCccEEEEEc
Q 005432 633 DIFTEIDRILRPEGWVIIR-----DTARLIESARALTTRLK-WDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 633 ~~l~E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~-W~~~~~~~e~~~~~~~li~~K 689 (697)
.+..=.-|.|+|||++++. +...++..+.....--+ |.+.++. +-...+++++..+
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~-Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVS-DFAGRPRFVIIHR 327 (328)
T ss_pred HHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheee-cccCCcceEEEEe
Confidence 4555567999999999985 33455555544333333 5555542 3334567766544
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=1.2 Score=49.95 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=66.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc-c----ccccccccCCCC---CCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G----VLHDWCEAFPTY---PRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli-g----~~~~~~e~f~ty---prtyDl~ 613 (697)
++|||++||+|+|+-+.+..+. -.|+-+|.. ..+..+-+ -|+- . +..|..+....+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 5799999999999855432211 123333433 23322211 1331 1 112332222222 2579999
Q ss_pred cccCcc-ccccCC--CCCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcCceeEEee
Q 005432 614 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 614 H~~~~~-~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
=++--+ +..+.. .......+++.-.-++|+|||+++.-.. .+..+.+.+-+..-..++++.+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 887543 211100 0012344566667799999999998432 4556666666766666776664
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=83.77 E-value=4.3 Score=44.17 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
+..++|.=||.|..+..+++.- ....++|+|.++.+++.++++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 3789999999999999999863 237799999999999999875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.30 E-value=8.3 Score=44.63 Aligned_cols=105 Identities=21% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCC-----CCCCcc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPY-----PSLSFD 349 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPf-----pd~sFD 349 (697)
..+|+|-.||+|.+.....+.- .....++|.|........|+.. ++. +.+...+...-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 3589999999999866654431 1125689999999998888753 444 2334444333332 336799
Q ss_pred EEEecccc--ccccc---------------------cH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 350 MLHCARCG--VDWDQ---------------------KD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 350 lV~~~~~l--lh~~~---------------------d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|+++.-. -.|.. .. ..++..+...|+|||+..|..+..
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99987432 11111 01 357899999999999777766543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=83.29 E-value=6.2 Score=37.83 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCc-EEE--eecccCCCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPA-MIG--SFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~-~~~--~~da~~LPfpd~sFDlV~ 352 (697)
...+|+|||++-|..+.+++-+|. -.|.+++.++...+..++. +.. .+. ......++-.-+.||+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCCCcceEE
Confidence 458999999999999999998874 4689999999998888763 221 111 011123443345688776
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=83.27 E-value=0.48 Score=52.00 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=35.5
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE--cCHHHHHHHHH
Q 005432 603 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESARA 662 (697)
Q Consensus 603 f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~ 662 (697)
|++-.+.||+|=|--.+.---. ..-....+|--+-..|||||+||.. |...+++++++
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 3432369999988555432110 2223446788899999999999986 66666566655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=82.80 E-value=1.5 Score=46.99 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred ceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCcc---c-ccccccccCCCC-----CCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---G-VLHDWCEAFPTY-----PRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGli---g-~~~~~~e~f~ty-----prtyDl 612 (697)
+-++||++|+++|..+.+|... +-.|.++=.-|....-.-..+-+-|+- = +..+-.+-++.+ +.+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 4689999999999999888751 112333332221111111122233431 1 111222222222 357999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHHH----HHhhcCceeEEeee
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----LTTRLKWDARVIEI 676 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~ 676 (697)
|-.+.-=.. ...++-+.=++|||||.+|+-+- ......+++ ++..=+++..+.-.
T Consensus 198 VFIDa~K~~---------Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKRM---------YQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHHH---------HHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 887543222 33566666689999999987311 111123333 44455577666532
Q ss_pred ccCCCccEEEEEcc
Q 005432 677 ESNSDERLLICQKP 690 (697)
Q Consensus 677 e~~~~~~~li~~K~ 690 (697)
.+.++|++|.
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 2678888874
|
|
| >cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators | Back alignment and domain information |
|---|
Probab=82.30 E-value=0.26 Score=48.98 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=44.6
Q ss_pred cccccccchhhhhHHHHhhhhhccCCCCcCCccccccCCCCccccCCch--hhhhhccccccccccCCCCcc
Q 005432 124 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNES--RNLALGYSNGDEVDRHCGQEL 193 (697)
Q Consensus 124 ~~~~yr~~~~~~~~~~~~~~~l~~g~~~~~~l~~C~~~~~~~~PC~d~~--~~~~~~~~r~~~~er~C~~~~ 193 (697)
..+|||.|++.|+.++..|..+...|. +++++.. |++.. .....+.++++++++++...+
T Consensus 33 ~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~-------ll~~~~~~~~~~L~~~~~~l~~ei~~L~ 94 (172)
T cd04790 33 SESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS-------LLQQPGDDATDVLRRRLAELNREIQRLR 94 (172)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH-------HHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999889 7888877 43322 122345667777777777644
|
Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.80 E-value=2.6 Score=38.56 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCccEEEeccccccccccHHH
Q 005432 293 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARCGVDWDQKDGI 366 (697)
Q Consensus 293 GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----P-fpd~sFDlV~~~~~llh~~~d~~~ 366 (697)
|.|.++..+++... ..|+++|.++.-++.+++.|....+.. ....+ . ..+..+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~-~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDY-SDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEET-TTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccc-cccccccccccccccccceEEEEecC-------cHH
Confidence 45788888887732 678999999999999998874333321 11110 1 23357999974422 146
Q ss_pred HHHHHHHhccCCeEEEEEeCCC
Q 005432 367 LLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 367 ~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+.+...+|+|||.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8999999999999999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.02 E-value=5.2 Score=44.40 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCce---eEEEEecCCHHHHHHHH---HcCC--CcEEEeecccCCC---------CCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLT---MCIANYEASGSQVQLTL---ERGL--PAMIGSFASKQLP---------YPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~---~sV~gvD~S~~ml~~A~---ergl--~~~~~~~da~~LP---------fpd 345 (697)
++.+|||+.+-+|+=++.|.+..... ..+++.|.+..-+.... .+-. ...+...++...| ...
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~ 234 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQ 234 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhh
Confidence 55899999999999998888763211 25888999876554332 2211 1222222222222 334
Q ss_pred CCccEEEecc-c----ccc---------cccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 346 LSFDMLHCAR-C----GVD---------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 346 ~sFDlV~~~~-~----llh---------~~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..||-|+|-- | .+. |... .-.+|..-.++||+||.+|.|+-..+.
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 5799998721 1 010 1100 124788899999999999999865443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=80.90 E-value=8.5 Score=43.08 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc---EEEeecccCCC-CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA---MIGSFASKQLP-YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~---~~~~~da~~LP-fpd~sFDlV~~~~ 355 (697)
.-+|||.=+|+|.=+.+++........|+..|++++.++..++. ++.. .+...|+..+= ...+.||+|=.--
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899999999998888887722356799999999998877653 4443 44455554432 2467899996431
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...+..+|....+.+|.||+|.++..
T Consensus 130 -----fGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 -----FGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -----CCCccHhHHHHHHHhhcCCEEEEecc
Confidence 23456799999999999999999864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=80.85 E-value=9.1 Score=40.61 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+||-+||| .|..+..+++.. ...++.++.+++.++.+.+.+....+.........-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 4788888987 677666666652 2457888888888888876663322211110000001246898875422
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.++.+.|+++|.++....
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEECC
Confidence 12467888999999999987653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.79 E-value=9.5 Score=41.18 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
.+.+||=.|+| .|.++..+++.. ...+++++.+++-++.+++.|....+. .... ..+.+|+++-...
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-----
Confidence 34789988975 444555566542 235788888888889998877543322 1111 1245887654322
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|++||.+++...
T Consensus 233 --~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 --AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --cHHHHHHHHHhhCCCcEEEEEec
Confidence 12478889999999999988764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=3.2 Score=48.29 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=60.7
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc---------Cc----cc-ccccccccCCCCCCccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR---------GF----VG-VLHDWCEAFPTYPRTYD 611 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R---------Gl----ig-~~~~~~e~f~typrtyD 611 (697)
-++|||+|||.|+.+..+++. .+|=.+=+|=.|. .-+..+-+. ++ +- +..|=.+-....+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 468999999999999888762 2221111122221 122222110 00 11 11121111223457899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc-----CHHHHHHHHHHHhhcCce
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD 670 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~ 670 (697)
+|-++- .........+=--..++-++-|+|+|||.+++.. ..+...++.+..++....
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 998862 2221100000001135557789999999999953 234445555555555443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=1.8 Score=46.43 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
..|||+|||.|.|+.+++.. .+- .+|+=+|-. ..+..+-++ ..--+..|-.+... +++||+|=++--|....
T Consensus 66 grVLDLGcGsGilsl~la~r-~~~--~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHR-CKP--EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES--NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc--cCCCcEEEEcCCccccC
Confidence 36999999999998888652 111 234444443 444444332 11111222222111 36899999988776522
Q ss_pred C--CCC--C---------C-CcchhhhhhcccccCCcEEEE
Q 005432 624 G--HRH--R---------C-STLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 624 ~--~~~--~---------c-~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. ++. + | .+...+-+.-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 1 001 1 1 135677888999999998775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 697 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 5e-09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-08 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-08 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 9e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 4e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 2e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 5e-06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 5e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 6e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 9e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 9e-06 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 2e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 2e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 2e-05 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 3e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 4e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 6e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 6e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 8e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 9e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 1e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 1e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 2e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 2e-04 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 3e-04 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 3e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 6e-04 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 245 EEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK 304
+S A+ + + ++ ++ +R +G R +LD+GCG G L
Sbjct: 37 GADVSVDDAT------DRLTDEMIALLDVR-------SGDR-VLDVGCGIGKPAVRL--- 79
Query: 305 ELLTMCIANYEA-------SGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD 349
+ S QV GL + LP+ SFD
Sbjct: 80 ------ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM--DLPFEDASFD 131
Query: 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 405
+ + L E+ RVL+PGG + KE +
Sbjct: 132 AVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRA 186
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 25/132 (18%)
Query: 287 ILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGS 335
+LD+ CG G F L S++++ A A + + G A
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGVDISEDMIR--KAREYAKSRESNVEFIVG-DAR--- 95
Query: 336 FASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV---WTSPLTNPQ 391
+L + +FD + V ++ + + EV RVLKP G F+ P+
Sbjct: 96 ----KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 392 AFLRNKENQKRW 403
QK W
Sbjct: 152 LKESLVVGQKYW 163
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--------------QLTLERGLPA 331
I DIGCG G TM +A QV + + GL
Sbjct: 49 LIADIGCGTGG----------QTMVLA--GHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 332 MI----GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
+ GS LP+ + D++ + + G L E + LK GGY
Sbjct: 97 RVTGIVGSMD--DLPFRNEELDLIWSEGAIYNIGFERG--LNEWRKYLKKGGYLA 147
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 5e-08
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 285 RTILDIGCGYGSFGAHLF------------SKELLTMCIANYEASGSQVQLTLERGLPAM 332
+T+LD G G +F S L + ++ +
Sbjct: 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNI--------S 76
Query: 333 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQ 391
G +LP+ S ++ + D + E+ RVLKPGG T +
Sbjct: 77 KGDIR--KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134
Query: 392 AFLRNKE 398
+ + ++
Sbjct: 135 RYNKGEK 141
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 9e-08
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 41/163 (25%)
Query: 242 MLEEEQISFRSASLIFD---------GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGC 292
M E ++ + + D + I G+ T +DIG
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG---------TCIDIGS 52
Query: 293 GYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ 340
G G+ L FSK + + + N + ++ + +G
Sbjct: 53 GPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG-DVH-------N 104
Query: 341 LPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV 382
+P D++ R V W+ E+ R+LK GG
Sbjct: 105 IPIEDNYADLIVS-RGSVFFWEDVAT-AFREIYRILKSGGKTY 145
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 286 TILDIGCGYGS--------FGAHL----FSKELLTMCIANYEASGSQVQLTLERGLPAMI 333
I DIGCG G + + + + N + ++ G
Sbjct: 49 KIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG-SMD- 106
Query: 334 GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
LP+ + D++ + + G + E + LK GG+
Sbjct: 107 ------NLPFQNEELDLIWSEGAIYNIGFERG--MNEWSKYLKKGGFIA 147
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 286 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 334
+LD+GCG G L S+ ++ E L+ +G
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPD----LSFIKG-DLS-- 108
Query: 335 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
LP+ + F+ + ++ L E+ RVLK GY
Sbjct: 109 -----SLPFENEQFEAIMAINSLEWTEEPLRALN-EIKRVLKSDGYAC 150
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 26/158 (16%)
Query: 269 EMIGLRNESNFI--------LAGVRTILDIGCGYGSFGAHL------------FSKELLT 308
+ I +RN +NFI ++LD+GCG G ++ +
Sbjct: 42 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 101
Query: 309 MCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILL 368
+ ++ K+ S F + + I
Sbjct: 102 DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYA----FSTSESLDIAQ 157
Query: 369 LEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFV 406
+ R L+PGGYF+ T P + L + + N
Sbjct: 158 RNIARHLRPGGYFIMTVP--SRDVILERYKQGRMSNDF 193
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 38/115 (33%)
Query: 286 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 334
ILD+G G G + HL + L+ + + + G
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------------SVTFHHG 91
Query: 335 SFASKQLPYPSLSFD-------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
+ L + ++H + D L+ + ++ GG +
Sbjct: 92 TIT--DLSDSPKRWAGLLAWYSLIHMGP----GELPD--ALVALRMAVEDGGGLL 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 32/158 (20%)
Query: 242 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV---RTILDIGCGYGSFG 298
M ++++ + + + + + + A + E+ I A ILD GCG G G
Sbjct: 2 MTTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIG 61
Query: 299 AHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS 347
+L L+ ++ ++G +
Sbjct: 62 GYLSKQGHDVLGTDLDPILIDYAKQDFP------------EARWVVGDLSV--DQISETD 107
Query: 348 FDMLHCARCGVDW---DQKDGILLLEVDRVLKPGGYFV 382
FD++ + V + L + R L G V
Sbjct: 108 FDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 23/110 (20%)
Query: 286 TILDIGCGYGSFGAHL-------------FSKELLTMCIANYEASGSQVQLTLERGLPAM 332
+L+ GCG G+ L S E L N E +G + + +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQA-NIF 97
Query: 333 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
LP+ SFD + + L + +VLKPGG
Sbjct: 98 -------SLPFEDSSFDHIFVCFVLEHLQSPEEA-LKSLKKVLKPGGTIT 139
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 48/168 (28%)
Query: 285 RTILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQ-VQLTLERGLPA 331
I+D+GCG+G F S+++L A +G + L++
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDK---- 100
Query: 332 MIGSFASKQLPYPSLSFD-------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV-- 382
L P SFD + + D + L V + L PGG+FV
Sbjct: 101 ---------LHLPQDSFDLAYSSLALHYVE----DVAR----LFRTVHQALSPGGHFVFS 143
Query: 383 WTSPLTNP---QAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVW 427
P+ + + E ++ W R VE + VV
Sbjct: 144 TEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEG--PRKTDWLAKGVVK 189
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 278 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA 337
I + +LDIGC G+ GA + I EA + E+ ++G
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIE 83
Query: 338 SKQLPYPSLSFDMLHCARCGVDWD----QKD-GILLLEVDRVLKPGGYFVWTSPLTNPQA 392
+ +PY FD + D D ++ +V +K G + + P + +
Sbjct: 84 TMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHIS 137
Query: 393 FL 394
L
Sbjct: 138 VL 139
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 9e-06
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 261 EDYSHQIAEMIG--LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 318
E+ E++ LR + R +LDIGCG G F + + ++ + + +
Sbjct: 18 EEKFRGSRELVKARLRRYIPYFKGC-RRVLDIGCGRGEFLELCKEEGIESIGV---DINE 73
Query: 319 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDML-------HCARCGVDWDQKDGILLLEV 371
++ E + P D + H ++ LL
Sbjct: 74 DMIKF-CEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL------DPERLFELLSLC 126
Query: 372 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 409
+K Y V SP NP + NF D
Sbjct: 127 YSKMKYSSYIVIESP--NPTSLY------SLINFYIDP 156
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPY 343
I DIG G G + L ++ L + E S Q + + G + L
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN--LAL 90
Query: 344 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 403
P S D + + + E+ R+++ G + T + Q W
Sbjct: 91 PDKSVDGVISILAIHHFSHLEKSFQ-EMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLW 149
Query: 404 NFVRDFV 410
F+
Sbjct: 150 EDALRFL 156
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 30/192 (15%)
Query: 255 LIFDGVEDYSHQIAEMIGLRNESNFI---LAGVRTILDIGCGYGSFGAHL---------- 301
+ ++ ++ + + ++ + + I DIGCG G+ L
Sbjct: 2 MAYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVD 61
Query: 302 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFD---MLHCARCGV 358
S+E+L + + V + +LP P D +L + +
Sbjct: 62 LSEEMLEIAQEKAMETNRHVDFWV--------QDMRELELPEP---VDAITILCDSLNYL 110
Query: 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418
+ R+L GG ++ + +P + N K + + + +
Sbjct: 111 QTEADVKQTFDSAARLLTDGGKLLFD--VHSP-YKMETLFNGKTYATHAEQSSYIWFADP 167
Query: 419 SQQDETVVWKKT 430
++ +VV + T
Sbjct: 168 GEEPLSVVHELT 179
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 33/162 (20%)
Query: 246 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---- 301
++++ S E+ S + R +L+ GCG+G A
Sbjct: 12 DRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTR-VLEAGCGHGPDAARFGPQA 70
Query: 302 -------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS-FDMLHC 353
FS ELL + AN + LP + F ++
Sbjct: 71 ARWAAYDFSPELLKLARANAPHADVYEWNGKGE-------------LPAGLGAPFGLIVS 117
Query: 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 395
R +L + + P +F++ P N
Sbjct: 118 RRGPTSV-------ILRLPELAAPDAHFLYVGPRLNVPEVPE 152
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 255 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 303
+ DY +I E+N LD+ CG G+ +L S
Sbjct: 12 KLIRADVDYKKWSDFIIEKCVENN---LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLS 68
Query: 304 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV---DW 360
+E+L+ + + G + +L ++ + FD++ C
Sbjct: 69 QEMLSEAENKFRSQGLKPRLAC--------QDISNLNINRK---FDLITCCLDSTNYIID 117
Query: 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 408
V LK GG F++ + + + N +N+ D
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFD--INSYYKLSQVLGNN-DFNYDDD 162
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 47/158 (29%)
Query: 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGS--------FGAHLFSKELL 307
I + +A + + + + LD+G GYG FG +
Sbjct: 59 IREASLRTDEWLASELAMTGV---LQRQAK-GLDLGAGYGGAARFLVRKFGVSI------ 108
Query: 308 TMCIANYEASGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD-------MLH 352
C+ + Q + + GL I GSF ++P S+D LH
Sbjct: 109 -DCLNI---APVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWSQDAFLH 162
Query: 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390
D + + E RVLKP G T P+
Sbjct: 163 SP----DKLK----VFQECARVLKPRGVMAITDPMKED 192
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 249 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV-RTILDIGCGYGSFGAHL------ 301
+ A+ +D + + ++A I S G L++G G G L
Sbjct: 4 ALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR 63
Query: 302 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA-- 354
+L + +VQ+ +P P S +
Sbjct: 64 YIALDADAAMLEVFRQKIAGVDRKVQVVQ--------ADAR--AIPLPDESVHGVIVVHL 113
Query: 355 -RCGVDWDQKDGILLLEVDRVLKPGGYFV--WTSPLTNPQAFLR 395
DW + +L E RVLKPGG + W +P+ L+
Sbjct: 114 WHLVPDWPK----VLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 45/276 (16%)
Query: 255 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 303
I D + A ++GL + G +LD+ CG G L S
Sbjct: 34 YIGDTRSRTAEYKAWLLGLLRQ-----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDAS 88
Query: 304 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV----- 358
++L A E + + ++ + + FD + C
Sbjct: 89 DKMLK--YALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 146
Query: 359 -DWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 416
DQ + L L + +++PGG V N L N + ++ +
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVID--HRNYDYILSTGCAPPGKNI---YYKSDLTK 201
Query: 417 LVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIP 476
++ TV K Y+ + PG+G + Y
Sbjct: 202 DITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSY--------------YPHC 247
Query: 477 IEERRNWPSRANLNKNELAVYG-VHPEEFAEDTENW 511
+ A + + +V G P +
Sbjct: 248 LASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPC 283
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 274 RNESNFILAGVR---TILDIGCGYGSFGAHLFSKELLTMCIANYEASG---SQVQLTL-- 325
R +F+ ++ +LD+G G G + + + +E S+ L +
Sbjct: 42 RLIGSFLEEYLKNPCRVLDLGGGTGKW-SLFLQE-------RGFEVVLVDPSKEMLEVAR 93
Query: 326 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-----DWDQKDGILLLEVDRVLKPGGY 380
E+G+ ++ + A LP+PS +F+ + A V + D+ E+ RVL P G
Sbjct: 94 EKGVKNVVEAKAED-LPFPSGAFEAV-LALGDVLSYVENKDK----AFSEIRRVLVPDGL 147
Query: 381 FVWTSPLTNPQAFLRNKENQKRWNFVRDFVE 411
+ T N FL+ + W+ + F++
Sbjct: 148 LIATVD--NFYTFLQQMIEKDAWDQITRFLK 176
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYP 344
IL++GCG G + + + S R G P F QL
Sbjct: 46 KILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLFH--QLDAI 100
Query: 345 SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV 382
++D + C + + + +L + R LKPGG F
Sbjct: 101 D-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 46/341 (13%), Positives = 94/341 (27%), Gaps = 111/341 (32%)
Query: 405 FVRDFVENL-CWELVSQQDET-VVWKKTSKASCYSSRKPGSGP-----SICSKGNDVESP 457
F FV+N C ++ QD + K S+ SG ++ SK ++
Sbjct: 25 FEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--- 78
Query: 458 YYR----PLQPCIGGTRNRRWI--PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENW 511
+ L+ N +++ PI+ + PS T +
Sbjct: 79 VQKFVEEVLRI------NYKFLMSPIKTEQRQPSM--------------------MTRMY 112
Query: 512 KTAVGNFWSLLSPLIFSDHP-KRPGDEDPSPPYNMVRNVLD------------MNAHFGG 558
++ +F+ + R PY +R L + G
Sbjct: 113 IEQRDRLYN--DNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGV----LG 160
Query: 559 FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGL 618
GK+ ++V + + + + W ++ E L
Sbjct: 161 S-------GKTWVALDVCLSYK------VQCKMDFKIF--WLN-LKNCNSPETVL--EML 202
Query: 619 LSL------------ESGHRHRCSTLDIFTEIDRILR----PEGWVIIRD--TARLIE-- 658
L + + I E+ R+L+ +++ + A+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 659 --SARAL-TTRLKWDARVIEIESNSDERLLICQKPFFKRQA 696
S + L TTR K + + + L +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK--QLP 342
+T+LD+GCG+G + E + + S + + ++ +
Sbjct: 46 KTVLDLGCGFGWHCIYA--AEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA 103
Query: 343 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 384
+++++ + + + + +V LK G F+++
Sbjct: 104 IEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 345
++IG G G F L K + + E S ++ +RG+ + G+ + LP
Sbjct: 50 RGVEIGVGTGRFAVPLKIK----IGV---EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 405
SFD + + L E R+LK GGY + ++N+++ F
Sbjct: 101 ESFDFALM-VTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 406 VRD 408
++
Sbjct: 160 YKN 162
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 32/158 (20%)
Query: 273 LRNESNFILAGVRTILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASG 318
L N I V I+D GCGYG G L + LL +
Sbjct: 13 LVNTVWKITKPVH-IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP 71
Query: 319 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPG 378
+ + G ++ +D+ C + +L ++ +K G
Sbjct: 72 YDSEF--------LEGDAT--EIELND-KYDIAIC-HAFLLHMTTPETMLQKMIHSVKKG 119
Query: 379 GYFV-----WTSPLTNPQAFLRNKENQKRWNFVRDFVE 411
G + W S + + + + ++ E
Sbjct: 120 GKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFE 157
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 41/114 (35%)
Query: 286 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 334
I+D GCG G + +L + L ++ ++I
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKE---------------VKEKFDSVIT 64
Query: 335 SFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 382
S P S D H D D K ++ EV R+LK G +
Sbjct: 65 L--SDPKEIPDNSVDFILFANSFH------DMDDKQH-VISEVKRILKDDGRVI 109
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 34/160 (21%)
Query: 256 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYE 315
I G + + +I I L S +LDIG G G ++ Y
Sbjct: 36 ISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYI---------NEKYG 78
Query: 316 A-------SGSQVQLTLER-GLPAMI----GSFASKQLPYPSLSFDMLHC--ARCGVDWD 361
A + V + ER I +P +FD+++ A + +
Sbjct: 79 AHTHGIDICSNIVNMANERVSGNNKIIFEANDIL--TKEFPENNFDLIYSRDAILALSLE 136
Query: 362 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK 401
K+ L + + LKP G + T + ++ +
Sbjct: 137 NKNK-LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY 175
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QL 341
LD G G G +L +K T + E ++ +G F
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 342 PYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 399
P ++D++ + D + + L P GY + + FL +KE+
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 246 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE 305
E + R A L + I + R + +LDIGCG G +
Sbjct: 53 EMMQARRAFLDAGHYQPLRDAIVAQLRER-----LDDKATAVLDIGCGEGYYTHAFADAL 107
Query: 306 LLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363
+ S ++ +R + + S +LP+ S D + + K
Sbjct: 108 PEITTFG-LDVSKVAIKAAAKRYPQVTFCVASSH--RLPFSDTSMDAIIR----IYAPCK 160
Query: 364 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 395
E+ RV+KPGG+ + +P L+
Sbjct: 161 ----AEELARVVKPGGWVITATPGPRHLMELK 188
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 25/113 (22%)
Query: 286 TILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASGSQVQLTLERGLPA 331
+ + CG+ S L + E L Q+TL R A
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ-DA 179
Query: 332 MIGSFASKQLPYPSLSFDMLHCARCG--VDWDQKDGILLLEVDRVLKPGGYFV 382
+L +D+L D + L + LKPGG V
Sbjct: 180 W-------KLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 281 LAGVR---TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLE 326
A R +LDIG G G +KE++ + + + G + + +
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQ 74
Query: 327 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV--- 382
+G A LP+P SFD++ C R + + EV RVLK G F+
Sbjct: 75 QG-TAE-------SLPFPDDSFDIITC-RYAAHHFSDVRKAVR-EVARVLKQDGRFLLVD 124
Query: 383 -WTSPLTNPQAFLRNKENQKRWNFVRDF 409
+ F+ + + + VR+
Sbjct: 125 HYAPEDPVLDEFVNHLNRLRDPSHVRES 152
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 49/189 (25%)
Query: 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP 342
+ D GCG A + +A+ + + + Q+P
Sbjct: 67 ASLVVADFGCGDCRL-ASSIRNPVHCFDLASLDPRVTVCDMA---------------QVP 110
Query: 343 YPSLSFDMLHC--ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ 400
S D+ + G + L E +RVLKPGG E
Sbjct: 111 LEDESVDVAVFCLSLMGTNIRD----FLEEANRVLKPGGLLKVA-------------EVS 153
Query: 401 KRWNFVRDFVENLC---WELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESP 457
R+ VR F+ + +++VS+ + + +K GP + +
Sbjct: 154 SRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFL------FDFQKT--GPPLVGPKAQLSGL 205
Query: 458 YYRPLQPCI 466
LQPC+
Sbjct: 206 ---QLQPCL 211
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 36/156 (23%)
Query: 285 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 333
+L+ G G G+ L S+E+ +
Sbjct: 47 GNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPK-----------EFSITE 95
Query: 334 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387
G F S P+ S D H D + + + + ++L GG V+ +
Sbjct: 96 GDFLS--FEVPT-SIDTIVSTYAFHHLT-----DDEKNVAIAKYSQLLNKGGKIVFADTI 147
Query: 388 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 423
Q + +L E ++
Sbjct: 148 FADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPV 183
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 34/147 (23%)
Query: 259 GVEDYSHQIAEM--------IGLRNESNFILAGVR---TILDIGCGYGSFGAHL------ 301
G + H M G +A ++ +LD+ G G
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 302 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 356
++++L + A E +G Q Q+ +G A Q+P+ F ++ C R
Sbjct: 62 VVAFDLTEDILKVARAFIEGNGHQ-QVEYVQG-DAE-------QMPFTDERFHIVTC-RI 111
Query: 357 GV-DWDQKDGILLLEVDRVLKPGGYFV 382
+ + E RVLK GG +
Sbjct: 112 AAHHFPNPASFVS-EAYRVLKKGGQLL 137
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 255 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 303
+ +E +I + + E VR +LD+ CG G L
Sbjct: 15 IYRRRIERVKAEIDFVEEIFKEDA--KREVRRVLDLACGTGIPTLELAERGYEVVGLDLH 72
Query: 304 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD-WDQ 362
+E+L + + +++ + ++ + + FD + + +D+
Sbjct: 73 EEMLRVARRKAKERNLKIEFLQGD----V------LEIAFKN-EFDAVTMFFSTIMYFDE 121
Query: 363 KDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 416
+D L +V LKPGG F+ P F ++ WN + + + +
Sbjct: 122 EDLRKLFSKVAEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMD 172
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 38/150 (25%)
Query: 285 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 333
+LD+GCG G L + L+ A
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQ-------- 105
Query: 334 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV--WTS 385
++ +D L D + LL + +L PGG V
Sbjct: 106 ---LAEAKVPVGKDYDLICANFALL----HQDIIE----LLSAMRTLLVPGGALVIQTLH 154
Query: 386 PLTNPQAFLRNKENQKRWNFVRDFVENLCW 415
P + ++ ++ + + + W
Sbjct: 155 PWSVADGDYQDGWREESFAGFAGDWQPMPW 184
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 19/128 (14%)
Query: 280 ILAGVRTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERG 328
+ ++D CG G+ L SK L IA E + + + L G
Sbjct: 53 LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALE--IAAKENTAANISYRLLDG 110
Query: 329 L-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387
L P S+ H + ++++ L + +L G
Sbjct: 111 LVPEQAAQIHSEIGDANIYMRTGFHH----IPVEKREL-LGQSLRILLGKQGAMYLIELG 165
Query: 388 TNPQAFLR 395
T F
Sbjct: 166 TGCIDFFN 173
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 697 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.66 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.6 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.53 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.53 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.52 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.52 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.52 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.51 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.49 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.49 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.48 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.48 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.48 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.47 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.47 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.47 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.47 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.47 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.46 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.46 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.44 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.44 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.43 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.43 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.43 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.43 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.43 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.43 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.42 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.42 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.42 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.42 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.41 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.4 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.4 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.38 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.38 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.37 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.36 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.36 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.35 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.34 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.34 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.34 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.33 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.33 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.32 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.32 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.31 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.31 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.31 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.29 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.28 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.28 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.28 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.27 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.26 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.25 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.24 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.24 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.24 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.23 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.23 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.21 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.21 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.21 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.2 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.2 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.18 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.18 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.16 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.16 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.16 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.15 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.15 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.15 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.15 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.14 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.14 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.13 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.13 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.13 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.13 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.13 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.13 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.13 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.12 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.12 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.12 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.11 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.11 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.11 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.11 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.11 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.1 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.1 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.1 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.09 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.09 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.09 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.09 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.09 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.07 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.07 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.07 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.07 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.05 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.05 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.05 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.05 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.05 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.04 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.03 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.03 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.02 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.02 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.02 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.02 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.02 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.01 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.0 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.0 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.0 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.99 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.99 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.98 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.98 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.98 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.98 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.98 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.98 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.97 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.97 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.96 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.96 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.96 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.95 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.95 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.95 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.95 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.92 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.92 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.91 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.9 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.9 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.9 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.9 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.9 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.89 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.89 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.89 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.88 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.88 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.88 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.87 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.85 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.85 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.85 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.84 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.82 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.81 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.8 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.8 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.79 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.79 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.78 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.78 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.78 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.78 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.76 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.76 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.75 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.75 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.71 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.71 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.65 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.65 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.63 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.62 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.59 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.59 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.59 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.59 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.58 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.58 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.58 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.56 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.56 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.54 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.51 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.48 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.48 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.43 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.42 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.41 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.3 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.29 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.28 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.24 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.23 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.22 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.21 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.19 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.19 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.19 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.16 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.16 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.16 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.14 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.14 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.13 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.11 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.1 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.09 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.09 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.07 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.06 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.05 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.05 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.04 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.02 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.02 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.01 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.0 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.99 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.99 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.99 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.98 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.98 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.98 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.98 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.95 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.95 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.94 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.94 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.93 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.93 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.93 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.92 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.91 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.9 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.9 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.87 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.87 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.87 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.86 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.86 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.86 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.85 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.84 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.84 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.84 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.84 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.83 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.83 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.83 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.83 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.82 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.81 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.81 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.81 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.81 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.8 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.8 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.8 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.79 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.79 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.78 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.78 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.78 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.77 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.76 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.75 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.74 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.73 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.72 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.71 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.69 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.68 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.68 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.68 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.68 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.68 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.68 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.67 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.66 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.66 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.66 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.65 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.64 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.64 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.64 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.63 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.63 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.63 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.62 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.62 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.6 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.58 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.58 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.57 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.57 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.57 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.57 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.55 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.54 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.54 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.51 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.51 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.49 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.49 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.48 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.46 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.46 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.45 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.45 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.44 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.44 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.43 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.43 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.43 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.43 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.42 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.41 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.4 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.39 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.38 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.38 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.38 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.37 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.36 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.35 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.35 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.34 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.34 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.32 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.32 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.32 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.3 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.29 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.28 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.28 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.27 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.27 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.27 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.23 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.22 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.21 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.21 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.2 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.18 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.17 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.16 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.14 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.14 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.14 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.13 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.12 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.12 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.11 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.11 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.1 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.1 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.1 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 97.09 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.09 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.09 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.09 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.07 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.06 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.06 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 97.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 96.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.98 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 96.95 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.94 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 96.93 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 96.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 96.88 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.87 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.84 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.81 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.8 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.79 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.78 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.78 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.77 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 96.74 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.72 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.67 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 96.67 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.59 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.59 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.57 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.51 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 96.49 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 96.48 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 96.48 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 96.47 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 96.44 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 96.39 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.38 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.35 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.29 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 96.27 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.23 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 96.13 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.12 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.06 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.06 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 96.04 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.03 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 96.02 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 95.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 95.94 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 95.93 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 95.92 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 95.92 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.92 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 95.9 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=165.52 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=96.2
Q ss_pred ccccccccccch-hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005432 249 SFRSASLIFDGV-EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 327 (697)
Q Consensus 249 ~F~~~~~~yd~~-~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er 327 (697)
.|++.+..|+.. ..|.+.+.+.+....+ ...+|||||||+|.++..|++++ .+|+|+|+|+.|++.|+++
T Consensus 10 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~------~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~ 80 (257)
T 4hg2_A 10 HFTPVADAYRAFRPRYPRALFRWLGEVAP------ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRH 80 (257)
T ss_dssp ----------CCCCCCCHHHHHHHHHHSS------CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhcC------CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhc
Confidence 366666677543 4455555555543322 34789999999999999999885 4689999999999988653
Q ss_pred CCCcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 328 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 328 gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++.+.+++++.+|+++++||+|+|..+ +||. ++..++.|+.|+|||||.|++.....
T Consensus 81 -~~v~~~~~~~e~~~~~~~sfD~v~~~~~-~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 -PRVTYAVAPAEDTGLPPASVDVAIAAQA-MHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp -TTEEEEECCTTCCCCCSSCEEEEEECSC-CTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CCceeehhhhhhhcccCCcccEEEEeee-hhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4678889999999999999999999988 6776 46789999999999999999987644
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=142.45 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++.. ++.+..+++..++++ ++||+|+|..+ +++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~-l~~~~ 120 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYA-FHHLT 120 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESC-GGGSC
T ss_pred CCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcc-hhcCC
Confidence 3799999999999999999884 469999999999999998755 677888899999988 89999999988 66666
Q ss_pred cHHH--HHHHHHHhccCCeEEEEEeCCCChhhhhhhH-------------Hhh-----hhhhhhhhhhhccceEEeeecC
Q 005432 363 KDGI--LLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK-------------ENQ-----KRWNFVRDFVENLCWELVSQQD 422 (697)
Q Consensus 363 d~~~--~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~-------------e~~-----~~W~~l~~la~~~~w~ll~~~~ 422 (697)
++.. +|+++.++|||||++++.++........... ... ..-+.+..+.++.+++......
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 7665 9999999999999999998755432211110 000 0124566677778887765544
Q ss_pred c
Q 005432 423 E 423 (697)
Q Consensus 423 ~ 423 (697)
.
T Consensus 201 ~ 201 (220)
T 3hnr_A 201 N 201 (220)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=148.65 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=93.3
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecc
Q 005432 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS 338 (697)
Q Consensus 264 ~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da 338 (697)
.+.+.+.+...+ ..+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ ++ ++.+.++|+
T Consensus 26 ~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~ 94 (260)
T 1vl5_A 26 LAKLMQIAALKG--------NEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94 (260)
T ss_dssp HHHHHHHHTCCS--------CCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHhCCCC--------CCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH
Confidence 345555555433 4799999999999999999885 3799999999999988765 33 477888999
Q ss_pred cCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 339 KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 339 ~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+|+++++||+|+|..+ ++|.+++..+|.++.|+|||||+|++.++.
T Consensus 95 ~~l~~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp -CCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HhCCCCCCCEEEEEEhhh-hHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 999999999999999998 666788899999999999999999998754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=143.53 Aligned_cols=136 Identities=18% Similarity=0.103 Sum_probs=104.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+.....++++|+++.+++.|+++ ++ ++.+..++...+++++++||+|++..+ +
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 116 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT-F 116 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC-G
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh-h
Confidence 37999999999999999998753446899999999999988765 33 477888899999999999999999998 6
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
++.+++..+++++.++|||||++++.++................-+.+..+.+..+|+.+..
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 66678889999999999999999999865432111011111122345566677778876543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=143.20 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+|||||||+|.++..+++.+. +++++|+|+.+++.|+++.. ++.+.++++..+ +++++||+|+|..+ +++.+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~-l~~~~ 117 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHV-LEHID 117 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESC-GGGCS
T ss_pred CCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhH-HHhhc
Confidence 46899999999999999998853 68999999999999998754 677788888887 57789999999998 66678
Q ss_pred cHHHHHHHHH-HhccCCeEEEEEeCCCCh
Q 005432 363 KDGILLLEVD-RVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 363 d~~~~L~El~-RvLKPGG~Lvis~p~~~~ 390 (697)
++..+|+++. |+|||||+++++++....
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 8899999999 999999999999986543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=148.09 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
++.+|||||||+|.++..|+++. .....|+|+|+|+.|++.|+++ + .++.+.++|+..+|++ .||+|+|+.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee
Confidence 45799999999999999998762 2346799999999999999875 2 3567888899888875 599999998
Q ss_pred ccccccccH--HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 356 CGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 356 ~llh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+ +|+.++. ..+|++++|+|||||.|++++....
T Consensus 148 ~-l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 148 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp C-GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred e-eeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 8 6665443 4689999999999999999987553
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=141.37 Aligned_cols=134 Identities=15% Similarity=0.086 Sum_probs=105.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc-c
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-Q 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~-~ 362 (697)
..+|||||||+|.++..+++.+. .++++|+++.|++.|+++...+.+.++++..+++++++||+|+|..++.|+. +
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 37899999999999999998853 6899999999999999987788899999999999999999999999844443 3
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHH---hhhhhhhhhhhhhccceEEeee
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE---NQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e---~~~~W~~l~~la~~~~w~ll~~ 420 (697)
+...+|+++.++|||||+++++++.......+.... ....-+.+..+.++.+|+.+..
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 778999999999999999999987654311111100 0112345666777778877644
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=140.71 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=103.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--CCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er--gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ ..++.+.+++...+++++++||+|+|..+ +++.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS-LEWT 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC-TTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh-Hhhc
Confidence 4799999999999999999985 3689999999999999887 34677888899999999999999999998 6666
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhh---------hhhhhhhhhhhccceEEee
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ---------KRWNFVRDFVENLCWELVS 419 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~---------~~W~~l~~la~~~~w~ll~ 419 (697)
+++..+|.++.++|||||+++++++.............. ..-..+..+.+..+|+.+.
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 888899999999999999999998765432111100000 0113466677778888764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=144.17 Aligned_cols=99 Identities=9% Similarity=-0.065 Sum_probs=81.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----------------CCCcEEEeecccCCCCCC-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLPYPS- 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----------------gl~~~~~~~da~~LPfpd- 345 (697)
..+|||+|||+|..+..|+++|. .|+|+|+|+.|++.|+++ ..++.+.++|+..+++++
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 47999999999999999999863 699999999999999876 236778899999999875
Q ss_pred CCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEe
Q 005432 346 LSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++||+|++..++.+..+ +...+++++.|+|||||++++..
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 79999999887444332 23569999999999999844443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-14 Score=136.92 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=90.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+|||||||+|.++..+++. ....++++|+++.+++.|+++ ++ ++.+.+++...+++++++||+|+|..+ +
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-l 121 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS-V 121 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC-G
T ss_pred CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch-H
Confidence 39999999999999999987 356899999999999988766 33 577888999999999999999999998 5
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
++.+++..+|+++.++|||||+++++++....
T Consensus 122 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 153 (219)
T 3dlc_A 122 FFWEDVATAFREIYRILKSGGKTYIGGGFGNK 153 (219)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred hhccCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence 66688899999999999999999999865543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=135.67 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=97.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++..++.+...+ +++++++||+|++..+ +++.++
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~-l~~~~~ 90 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANS-FHDMDD 90 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESC-STTCSC
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccc-hhcccC
Confidence 4799999999999999999885 38999999999999999886677777666 7888899999999998 666678
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 364 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
+..+++++.++|||||++++.++................-+.+..+.+ +|+.+..
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~ 145 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR 145 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc
Confidence 899999999999999999999875532111111111112234445555 7776644
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=143.56 Aligned_cols=103 Identities=26% Similarity=0.416 Sum_probs=89.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.. ..+++++|+|+.+++.++++ ++ .+.+..++...+|+++++||+|++..+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 34799999999999999998863 35799999999999988765 43 477888899999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.++|||||++++.++..
T Consensus 139 -l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 139 -LHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp -TTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred -hhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 6667788899999999999999999998643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-14 Score=137.06 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=89.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..+ +. ..++++|+++.+++.++++...+.+..++...+|+++++||+|++..+ +++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTT-LEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESC-TTTCS
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcCh-hhhcC
Confidence 4579999999999999888 22 268999999999999998866677888899999999999999999988 66677
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++..+|+++.++|||||.++++++...
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 889999999999999999999998654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=145.68 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL 341 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L 341 (697)
.+.+.+.+.+... +..+|||||||+|.++..+++.+ ..++++|+|+.|++.++++. ++.+.+.+++.+
T Consensus 21 ~~~~~l~~~~~~~--------~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~ 88 (261)
T 3ege_A 21 RIVNAIINLLNLP--------KGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHHCCC--------TTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCT-TEEEECCCTTSC
T ss_pred HHHHHHHHHhCCC--------CCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcc-CCEEEECchhhC
Confidence 3444555555432 34899999999999999999864 57999999999999887765 788888999999
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 342 PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 342 Pfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|+++++||+|+|..+ +++.+++..+++++.++|| ||++++.++..
T Consensus 89 ~~~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 89 ALPDKSVDGVISILA-IHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp CSCTTCBSEEEEESC-GGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred CCCCCCEeEEEEcch-HhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 999999999999998 6666889999999999999 99988888754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=143.45 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=90.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||||||+|.++..+++.+ ..++++|+|+.|++.++++..++.+..+++..+|+ +++||+|+|..+ +++.++
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~-l~~~~d 132 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAM-LHWVKE 132 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESC-GGGCSC
T ss_pred CCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcch-hhhCcC
Confidence 4799999999999999999853 57999999999999999886677788889999998 579999999988 777788
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 364 DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+..+|.++.|+|||||++++..+....
T Consensus 133 ~~~~l~~~~~~LkpgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 133 PEAAIASIHQALKSGGRFVAEFGGKGN 159 (279)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 999999999999999999999876543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=143.27 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 334 (697)
....+.+.+.+...+ ..+|||||||+|.++..+++.. ...++++|+|+.|++.|+++ ++ ++.+.
T Consensus 22 ~~~~~~l~~~~~~~~--------~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~ 91 (256)
T 1nkv_A 22 EEKYATLGRVLRMKP--------GTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 91 (256)
T ss_dssp HHHHHHHHHHTCCCT--------TCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhcCCCC--------CCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEE
Confidence 444555555554333 3799999999999999998873 34689999999999988754 44 47788
Q ss_pred eecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 335 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++++..+++ +++||+|+|..+ +++.+++..+|+++.|+|||||++++.++.
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~-~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCC-hHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 899999988 789999999988 566677889999999999999999998763
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=142.41 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
...+|||||||+|.++..+++.+.. .++++|+|+.+++.|+++. ..+.+.++++..+++++++||+|+|..+ +++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA-LHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESC-GGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchh-hhh
Confidence 4589999999999999999998642 7999999999999998874 4677888999999999999999999998 666
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+++..+|+++.++|||||+++++.+.+
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 6888999999999999999999987753
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=143.53 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=90.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+..+|||||||+|.++..+++.. ...++++|+|+.+++.|+++. .++.+.+.|...+|+++++||+|+|..+ ++
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 131 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDA-IL 131 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESC-GG
T ss_pred CCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHH-HH
Confidence 45799999999999999999873 357999999999999999875 4677888899999999999999999988 55
Q ss_pred cc--ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 WD--QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~--~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+. +++..+|+++.++|||||++++.++..
T Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 55 677889999999999999999998744
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=142.58 Aligned_cols=101 Identities=21% Similarity=0.181 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
++.+|||||||+|.++..+++. ....++++|+|+.+++.|+++ ++ .+.+.+.|...+|+++++||+|+|..+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 4589999999999999999988 345799999999999988765 43 377888999999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ ++. ++..+++++.++|||||+++++++.
T Consensus 124 ~-~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 124 I-YNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp G-GGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred c-eec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 4 444 6889999999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=144.74 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=88.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+..++...+|+++++||+|++..+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 34799999999999999998872 24799999999999988764 33 477888899999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.|+|||||++++.++..
T Consensus 160 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 160 -FLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 5556778899999999999999999998754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=139.89 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=91.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.. +...++++|+|+.|++.++++..++.+..+|...++ ++++||+|+|..+ ++|.+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 109 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAV-FQWVP 109 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESC-GGGST
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCc-hhhCC
Confidence 45789999999999999998872 234689999999999999988767888889999988 7889999999988 77778
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++..+|.++.++|||||+++++++..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 110 DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 89999999999999999999998754
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=139.53 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=88.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ ++ ++.+..+++..+|+++++||+|+|..+ +
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-l 97 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA-A 97 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC-G
T ss_pred CCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc-h
Confidence 4899999999999999999885 3799999999999888754 33 477888899999999999999999988 5
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++.+++..+|.++.++|||||++++.++..
T Consensus 98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 556788899999999999999999987654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=139.19 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|.++..+++.+ ..++++|+|+.|++.++++ ..++.+..++...+|+++++||+|++..+ +
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL-W 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC-G
T ss_pred CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc-h
Confidence 45799999999999999999874 4699999999999999877 34677888899999999999999999988 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEE
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
|+.++...++.++.++|||||++++.
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 77788899999999999999999988
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=140.32 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC--CCCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L--Pfpd~sFDlV~~~~~llh~ 360 (697)
+..+|||||||+|.++..+++.+. .++++|+|+.+++.++++ +.+..++...+ |+++++||+|+|..+ +++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~-l~~ 113 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHF-VEH 113 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESC-GGG
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCc-hhh
Confidence 357999999999999999998853 589999999999999887 66677777665 888999999999998 555
Q ss_pred cccH--HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 361 DQKD--GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 361 ~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.+++ ..+++++.++|||||+++++++....
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 5544 78999999999999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-14 Score=144.29 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPA 331 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~ 331 (697)
..+.+.+.+.+.... ..+|||||||+|.++..|++.+. +++++|+|+.|++.|+++. ..+
T Consensus 43 ~~~~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHG--------CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTT--------CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhcccC--------CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhccccccccee
Confidence 445555666655433 37999999999999999999853 7999999999999987642 245
Q ss_pred EEEeecccCCC---CCCCCccEEEec-ccccccccc-------HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 332 MIGSFASKQLP---YPSLSFDMLHCA-RCGVDWDQK-------DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 332 ~~~~~da~~LP---fpd~sFDlV~~~-~~llh~~~d-------~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+..++...++ +++++||+|+|. .+ +++..+ ...+|+++.++|||||+|+++.+..
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~-l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNS-FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTC-GGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred eEeecChhhCccccccCCCeEEEEEcChH-HhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 56777888887 888999999998 67 666666 7789999999999999999998753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=134.34 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=86.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
...+|||||||+|.++..+++.+ ..++++|+++.+++.|+++.. ++.+.+++...++ ++++||+|+|..+ ++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV-LY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC-GG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH-HH
Confidence 34799999999999999999884 579999999999999987642 5678888988888 6789999999988 66
Q ss_pred ccccH---HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 WDQKD---GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~~d~---~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.+++ ..+|.++.++|||||+++++++..
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 66665 467999999999999999988754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=140.25 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=89.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++... .+.++++..+++++++||+|+|..+++|+.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 34799999999999999999885 4699999999999999987653 3777888999999999999999987688877
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++..+|+++.++|||||.+++++++.
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 88899999999999999999998754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=134.28 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=87.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
..+|||||||+|.++..+++.+ .+++++|+++.+++.+++.+ .++.+..+|...+ +++++||+|+|..+ +++.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~-l~~~~ 121 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHW-LAHVP 121 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESC-GGGSC
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEech-hhcCC
Confidence 3699999999999999999884 46899999999999999877 4677888888888 78899999999998 55565
Q ss_pred cH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 KD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++ ..+|+++.++|||||.+++.++..
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 64 689999999999999999998765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=138.45 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++ ++. +.+.++|+..+|+++++||+|+|..+
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence 347999999999999999998853 3799999999999988765 443 77888999999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++. ++..+++++.++|||||+++++++.
T Consensus 124 -l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 124 -IYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp -SCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred -Hhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 4444 6889999999999999999999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=135.65 Aligned_cols=101 Identities=22% Similarity=0.348 Sum_probs=88.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--CcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..+|||||||+|.++..+++.+. ..++++|+++.+++.|+++.. .+.+...+...+++++++||+|++..+ +++.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~ 120 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA-LHYV 120 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESC-GGGC
T ss_pred CCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecc-cccc
Confidence 47999999999999999998853 279999999999999988753 467788888889998899999999988 6666
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++...+|+++.++|||||+++++++.
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 78889999999999999999999874
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-14 Score=140.00 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
...+|||||||+|.++..+++.+ ...++++|+|+.+++.|+++. ..+.+.+.+...+++++++||+|+|..+ ++
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~ 169 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT-AI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC-GG
T ss_pred CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcch-hh
Confidence 45799999999999999998875 346999999999999998875 3466788888899999999999999998 55
Q ss_pred cc--ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WD--QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~--~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+. ++...+|+++.++|||||++++.++.
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 55 34678999999999999999999863
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=134.47 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CcEEEeecccCCCCCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
..+|||||||+|.++..+++.+ ....++++|+++.+++.|+++. + .+.+.++++..+++++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 4799999999999999999874 3357999999999999998762 2 577788888778887789999999
Q ss_pred ccccccccccH--HHHHHHHHHhccCCeEEEEEeC
Q 005432 354 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis~p 386 (697)
..+ +++.+++ ..+++++.++|||||+++++..
T Consensus 109 ~~~-l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 109 IEV-IEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp ESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 998 5555554 6899999999999997776544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=149.81 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=91.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------C----CCcEEEeecccCC------CC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------G----LPAMIGSFASKQL------PY 343 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---------g----l~~~~~~~da~~L------Pf 343 (697)
++.+|||||||+|.++..+++.......++++|+|+.|++.|+++ | .++.+..+++..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 457999999999999999988632345799999999999999876 4 4678888888887 99
Q ss_pred CCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 344 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 344 pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++++||+|+++.+ +++.+++..+|+++.|+|||||+|+++++..
T Consensus 163 ~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 163 PDSSVDIVISNCV-CNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEccc-hhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 9999999999988 7777889999999999999999999987644
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=138.29 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=88.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+..+|||||||+|.++..+++.. +...++++|+|+.+++.|+++.. ++.+.++|...++++ ++||+|+|..+ ++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~-l~ 120 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALS-IH 120 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESC-GG
T ss_pred CCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCc-cc
Confidence 45899999999999999999873 34679999999999999987632 577888899999988 89999999998 55
Q ss_pred ccccHH--HHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 360 WDQKDG--ILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 360 ~~~d~~--~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+.+++. .+|+++.++|||||+++++++....
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 555554 5999999999999999999876543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=133.57 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CcEEEeecccCCCCCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
..+|||||||+|.++..+++.+ ....++++|+|+.+++.|+++. + .+.+.++++..+++++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 4799999999999999999875 3367999999999999998752 1 577888888888888889999999
Q ss_pred ccccccccccH--HHHHHHHHHhccCCeEEEEEe
Q 005432 354 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 354 ~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+ +++.+++ ..+++++.++|||||++++..
T Consensus 109 ~~~-l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 109 IEV-IEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp ESC-GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HHH-HHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 998 5555554 689999999999999666544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-14 Score=145.99 Aligned_cols=104 Identities=15% Similarity=0.090 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCchHHHHH----hhcCCcee--EEEEecCCHHHHHHHHHc-----CCC-c--EEEeecccCCC------
Q 005432 283 GVRTILDIGCGYGSFGAHL----FSKELLTM--CIANYEASGSQVQLTLER-----GLP-A--MIGSFASKQLP------ 342 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~L----a~~g~~~~--sV~gvD~S~~ml~~A~er-----gl~-~--~~~~~da~~LP------ 342 (697)
+..+|||||||+|.++..+ +.+. ... .++++|+|+.|++.|+++ +++ + .+..++++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4579999999999876543 3322 223 349999999999988765 222 2 23444554443
Q ss_pred CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 343 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 343 fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++++||+|+|..+ +||.+|+..+|++++|+|||||+|++..+..
T Consensus 131 ~~~~~fD~V~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeee-eeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 67889999999998 7888899999999999999999999987643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=131.91 Aligned_cols=103 Identities=27% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C------CcEEEeecccCCCCCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l------~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++. + .+.+...+...+++++++||+|++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4789999999999999999884 46999999999999998753 2 356778899999999999999999
Q ss_pred ccccccccccHH---HHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 354 ARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ~~~llh~~~d~~---~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..+ +++.+++. .+|+++.++|||||++++.++....
T Consensus 108 ~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (235)
T 3sm3_A 108 QAF-LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW 146 (235)
T ss_dssp ESC-GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCT
T ss_pred cch-hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcch
Confidence 988 66666666 8999999999999999999876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=141.42 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-fpd~sFDlV~~~~~ 356 (697)
+.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++ ++ .+.+..++...++ +++++||+|+|..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 5799999999999999999884 4689999999999998865 33 4667888988888 78899999999988
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.++|||||++++.++..
T Consensus 146 -l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 146 -LEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp -GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred -hhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 6667888999999999999999999998754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=139.37 Aligned_cols=99 Identities=10% Similarity=-0.016 Sum_probs=82.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------------CCcEEEeecccCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------------LPAMIGSFASKQL 341 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------------------l~~~~~~~da~~L 341 (697)
..+|||+|||+|..+..|+++|. .|+|+|+|+.|++.|+++. .++.+.++|+..+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 47999999999999999999874 5999999999999997542 3567888999999
Q ss_pred CCCC-CCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEe
Q 005432 342 PYPS-LSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 342 Pfpd-~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++++ ++||+|++..++.+..+ +...+++++.|+|||||+|++.+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8864 89999999887444432 34579999999999999997554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=136.40 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=86.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecc-cccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR-CGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~-~llh~~ 361 (697)
+..+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++...+.+.++|+..+++ +++||+|+|.. + +++.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~-l~~~ 124 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSS-IGHL 124 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTG-GGGS
T ss_pred CCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCch-hhhc
Confidence 34799999999999999999885 36899999999999999987788888899999988 67999999998 6 5555
Q ss_pred c---cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 362 Q---KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~---d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. +...+|+++.++|||||+|++...
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 3 456789999999999999999754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=141.44 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=86.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-------CCCcEEEeecccCCCCCC------CCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPS------LSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~LPfpd------~sFD 349 (697)
+..+|||||||+|.++..+++.......++++|+|+.|++.|+++ ..++.+.++++..+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 458999999999999999996311356799999999999999875 457788899999999887 8999
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+|+|..+ +||. ++..++.++.++|||||+|++.+
T Consensus 116 ~V~~~~~-l~~~-~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 116 MITAVEC-AHWF-DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEESC-GGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeHhhH-HHHh-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999998 6666 88999999999999999999843
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-14 Score=153.28 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEE---EeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI---GSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~---~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+..+|||||||+|.++..+++++. .++++|+|+.|++.|++++++... ...+...+|+++++||+|++..+ ++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v-l~ 182 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANT-LC 182 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESC-GG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECCh-HH
Confidence 347999999999999999998864 689999999999999998765542 23455667788899999999998 66
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.+++..+|++++++|||||++++.++..
T Consensus 183 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 183 HIPYVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 67789999999999999999999998753
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=138.13 Aligned_cols=104 Identities=22% Similarity=0.283 Sum_probs=90.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|.++..+++.+ +...++++|+++.+++.|+++ ++ ++.+...|...+++++++||+|++..+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV- 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC-
T ss_pred CCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech-
Confidence 45799999999999999999873 346799999999999988765 33 577888899999999999999999998
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..++.++.++|||||++++.++..
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 6677888899999999999999999988643
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=134.74 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=84.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ- 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~- 362 (697)
..+|||||||+|.++..+++.+ ..++++|+|+.+++.++++. .+.+..++...++ ++++||+|+|..+ +++.+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~~ 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHAC-LLHVPR 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSC-GGGSCH
T ss_pred CCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCc-hhhcCH
Confidence 4799999999999999999885 36899999999999998873 3445566788888 7889999999998 44454
Q ss_pred -cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 363 -KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 363 -d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+...+|+++.++|||||+++++.+...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 567899999999999999999976543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-13 Score=131.20 Aligned_cols=101 Identities=22% Similarity=0.256 Sum_probs=85.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||||||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+.+.|...+++++++||+|+|..++.+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 57999999999999999998853 799999999999988765 35678888899889988889999999977322
Q ss_pred -ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 -WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 -~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.++...+++++.++|||||.+++.++.
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 2345678999999999999999998874
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=130.96 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCEEEEeCCCCchHH-HHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFG-AHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a-~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++ ..+++.+ ..++++|+|+.+++.|+++ +.++.+.++++..+++++++||+|+|..++.
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 479999999999984 4555543 4699999999999888754 4567788889999999999999999998844
Q ss_pred ccc-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|+. ++...+++++.++|||||++++.++..
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 442 556789999999999999999998754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=133.10 Aligned_cols=128 Identities=15% Similarity=0.018 Sum_probs=95.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC------CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL------PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl------~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+|||||||+|.++..+++.+ ..++++|+|+.+++.|+++.. .+.+.++|...++ ++++||+|+|..+ +
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~-l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF-F 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS-T
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh-h
Confidence 599999999999999998764 569999999999999987642 3678888888877 4569999999988 5
Q ss_pred cccc--cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEee
Q 005432 359 DWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419 (697)
Q Consensus 359 h~~~--d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~ 419 (697)
++.+ +...+++++.++|||||++++.+.......... .....-+.+..+.+..+|+.+.
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP--PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS--SCCCCHHHHHHHHGGGTEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC--CccCCHHHHHHHHHHcCCeEEE
Confidence 5554 667899999999999999999876543210000 0001224455666777777653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=138.18 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=88.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|.++..+++.......++++|+|+.+++.|+++ +.++.+.+.|+..++++ ++||+|+|..+ +
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~-l 99 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF-L 99 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC-G
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh-h
Confidence 458999999999999999998732236799999999999988765 33577888899999885 59999999998 6
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++.+++..+++++.++|||||++++.++.
T Consensus 100 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 66788899999999999999999999986
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=128.41 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccccc-
Q 005432 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW- 360 (697)
Q Consensus 286 ~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~- 360 (697)
+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +..+.+.++++..+++++++||+|+|..+ |+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCC
Confidence 89999999999999999875 3799999999999988765 55778888899889998899999999643 33
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..+...++.++.++|||||++++.++....
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 245678999999999999999999876544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=135.49 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|.++..+++.+ ...++++|+++.+++.|+++.. .+.+...++..+++++++||+|+|..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV- 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch-
Confidence 35799999999999999998875 4579999999999999987642 356778888889998889999999988
Q ss_pred ccccccH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++ ..+|+++.++|||||++++.++..
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 5555554 489999999999999999988643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-13 Score=138.50 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=88.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..++++. ...++++|+++.+++.|+++ ++ ++.+..+|+..+|+++++||+|+|..+
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 45799999999999999999872 25699999999999988764 44 477888999999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+++. +...+|+++.++|||||++++.++...
T Consensus 195 -l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 195 -TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp -GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred -hhhC-CHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 5555 488999999999999999999886543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=130.93 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=83.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC---CCCC-CCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---Pfpd-~sFDlV~~~~~llh 359 (697)
+.+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ ....+...+...+ ++.. ++||+|+|..+ ++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~-l~ 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFA-LL 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESC-CC
T ss_pred CCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECch-hh
Confidence 3899999999999999999885 3689999999999999987 4455665665555 5544 45999999988 55
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..++..+++++.++|||||+++++++.+..
T Consensus 128 -~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 128 -HQDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp -SSCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred -hhhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 677889999999999999999999986543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=131.31 Aligned_cols=96 Identities=24% Similarity=0.297 Sum_probs=85.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||||||+|.++..+++. +++|+++.+++.++++ .+.+...+...+++++++||+|++..+ +++.++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTT-ICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESC-GGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcch-HhhccC
Confidence 478999999999999998764 8999999999999987 566777888889998899999999998 666788
Q ss_pred HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 364 DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+..+|.++.++|+|||+++++++...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRE 143 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence 89999999999999999999987654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=131.70 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=86.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~- 361 (697)
+..+|||||||+|.++..+++.+. .++++|+|+.|++.|+++..++.+...++..+++ +++||+|+|....+++.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCC
T ss_pred CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcC
Confidence 347999999999999999998853 6999999999999999887678888889888887 67999999766336655
Q ss_pred --ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 362 --QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 362 --~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++...+|+++.++|||||+++++++..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 344689999999999999999987643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=126.93 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=83.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ ++ ++.+..+|...+++ +++||+|++..+ +
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~-l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVV-L 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESC-G
T ss_pred CCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcch-h
Confidence 3799999999999999999884 3699999999999888754 44 57788889888888 789999999998 4
Q ss_pred cccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++.+ +...+++++.++|||||++++.++
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 5444 567899999999999999888764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.3e-13 Score=129.26 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
...+|||||||+|.++..+++.+.. .++++|+++.+++.|+++. ..+.+.++++..+++++++||+|++..++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3478999999999999999988642 7999999999999998764 3567788898889999899999999877432
Q ss_pred c--------------cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 W--------------DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~--------------~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ..+...++.++.++|||||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 2 1245689999999999999999999864
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=124.35 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~- 361 (697)
+..+|||||||+|.++..+++.+ ..++++|+++.+++.++++..++.+...+...+++++++||+|++....+++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 34799999999999999999884 46999999999999999887678888889888888889999999983335555
Q ss_pred -ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 362 -QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 362 -~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++...++.++.++|+|||.+++..+..
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 334689999999999999999987654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-13 Score=131.90 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=92.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeec
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA 337 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~d 337 (697)
.+.+.+.+.+.... .+..+|||||||+|.++..+++.+ ..++++|+++.|++.|+++ +..+.+.+.+
T Consensus 22 ~~~~~~~~~l~~~~------~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d 92 (246)
T 1y8c_A 22 KWSDFIIEKCVENN------LVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHHTTT------CCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred HHHHHHHHHHHHhC------CCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecc
Confidence 34445555554321 134799999999999999999885 4699999999999988765 3467888889
Q ss_pred ccCCCCCCCCccEEEecc-cccccc---ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 338 SKQLPYPSLSFDMLHCAR-CGVDWD---QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 338 a~~LPfpd~sFDlV~~~~-~llh~~---~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+..++++ ++||+|+|.. + +++. ++...+|+++.++|||||+++++.+.+
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~-l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDS-TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTG-GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccCCcc-CCceEEEEcCcc-ccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 9888887 7999999998 7 5555 456789999999999999999987753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=124.36 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=94.3
Q ss_pred ccccccccccch--hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005432 249 SFRSASLIFDGV--EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 249 ~F~~~~~~yd~~--~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
.|......|... ....+.+.+.+... +..+|||+|||+|.++..+++. ...++++|+++.+++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~ 92 (194)
T 1dus_A 24 KFKTDSGVFSYGKVDKGTKILVENVVVD--------KDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKE 92 (194)
T ss_dssp EEEEETTSTTTTSCCHHHHHHHHHCCCC--------TTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCcCCccccchHHHHHHHHcccC--------CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHH
Confidence 444444444322 23445555555433 3479999999999999999987 3579999999999998876
Q ss_pred c----CCC---cEEEeecccCCCCCCCCccEEEeccccccc-cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 327 R----GLP---AMIGSFASKQLPYPSLSFDMLHCARCGVDW-DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 327 r----gl~---~~~~~~da~~LPfpd~sFDlV~~~~~llh~-~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ ++. +.+...+... ++++++||+|++... +++ ..+...+++++.++|+|||.+++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 93 NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred HHHHcCCCccceEEEECchhc-ccccCCceEEEECCC-cccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 5 444 6777777665 455779999999877 554 3455789999999999999999998865
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=134.94 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=83.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+...|...+| ++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 34799999999999999998542 23799999999999998875 32 5667777887776 78999999998
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+.|+. ++...+|+++.++|||||.+++.++...
T Consensus 139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred hhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 55543 5678999999999999999999987643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=124.47 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC-CCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP-fpd~sFDlV~~~~~ 356 (697)
...+|||+|||+|.++..+++. ...|+++|+|+.|++.|+++ ++ ++.+.+.+...++ +.+++||+|+++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 4579999999999999999987 35799999999999988764 43 4566666666643 55789999998743
Q ss_pred cccc--------cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~--------~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++. ..+...++.++.++|||||++++.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 2332 1333578999999999999999987643
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-13 Score=133.69 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCC--CCCCCCccEEEe-cc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQL--PYPSLSFDMLHC-AR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~L--Pfpd~sFDlV~~-~~ 355 (697)
...+|||||||+|.++..+++.+ ...++++|+|+.|++.|+++. .++.+.++++..+ ++++++||+|++ .+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 34799999999999999998764 347999999999999998753 4567788888888 899999999999 44
Q ss_pred cc-ccc--cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CG-VDW--DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~l-lh~--~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. .+. ..+...++++++|+|||||+|++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 42 111 12234689999999999999998764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=135.18 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=83.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
+..+|||||||+|.++..+++. + ..++++|+|+.+++.|+++ ++ .+.+...|...+ +++||+|++..
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~ 145 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG 145 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEES
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcc
Confidence 3479999999999999999987 4 5699999999999988765 44 366777787766 68999999999
Q ss_pred ccccccccH---------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 356 CGVDWDQKD---------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 356 ~llh~~~d~---------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+ +++.+++ ..+++++.++|||||++++.++....
T Consensus 146 ~-~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 146 A-FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp C-GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred h-HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 8 5555443 68999999999999999999876543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.3e-13 Score=137.03 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=86.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|||||||+|.++..|++.+ ..++++|+|+.+++.|+++. .++.+.++|+..+++ +++||+|+|...
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 589999999999999999885 45899999999999988652 357788999999988 679999998766
Q ss_pred ccccccc--HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.+++.+. ...+|+++.++|||||+|++.++...
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 5776653 46899999999999999999998764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-13 Score=139.99 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-------cEEEeecc------cCC--CC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-------AMIGSFAS------KQL--PY 343 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-------~~~~~~da------~~L--Pf 343 (697)
...+|||||||+|..+..++..+ ...|+|+|+|+.|++.|+++ +.. +.+.+.++ ..+ ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 35799999999998666665553 34699999999999999875 222 33444544 323 46
Q ss_pred CCCCccEEEecccccccc---ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 344 PSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 344 pd~sFDlV~~~~~llh~~---~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++++||+|+|.++ +|+. .+...+|+++.|+|||||+|+++++.
T Consensus 126 ~~~~FD~V~~~~~-lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQFA-IHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEESC-GGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCeeEEEECch-HHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7789999999988 5543 34578999999999999999999885
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=127.86 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=86.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC--CCCCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--LPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~--LPfpd~sFDlV~~~~~llh~ 360 (697)
+..+|||||||+|.++..+++.+ ..++++|+++.+++.++++.. .+...+... +++++++||+|++..+ +++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~-l~~ 105 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDV-LEH 105 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESC-GGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECCh-hhh
Confidence 45799999999999999999884 579999999999999987653 455667665 6788899999999988 666
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.+++..++.++.++|||||+++++++...
T Consensus 106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 106 LFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp SSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 77888999999999999999999987653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=136.48 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..++........++++|+++.+++.|+++. +. +.+.++|+..++++ ++||+|+|..+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 4579999999999999999643335568999999999999998753 22 67888999999988 89999999988
Q ss_pred cccccccHHH---HHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGI---LLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~---~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++.. +++++.++|||||++++++...
T Consensus 197 -~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 197 -NIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp -GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred -hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 555555544 7999999999999999998654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=133.07 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccC--CCCCCCCccEEEec--
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ--LPYPSLSFDMLHCA-- 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~--LPfpd~sFDlV~~~-- 354 (697)
.+.+|||||||+|..+..++++. ..+++++|+|+.|++.|+++ +..+.+...+++. .++++++||.|++-
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 34799999999999999998874 45799999999999999865 3445566566544 35888999999752
Q ss_pred ---cccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 355 ---RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 355 ---~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.. .++..+...++.++.|+|||||.|++..
T Consensus 138 ~~~~~-~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGG-GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccc-hhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 22 3345667889999999999999998853
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=128.56 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=82.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecc-ccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-CGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~-~ll 358 (697)
..+|||||||+|.++..+++. ..++++|+|+.+++.|+++ +..+.+...++..++++ ++||+|+|.. + +
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~-~ 107 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDS-L 107 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTG-G
T ss_pred CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCc-h
Confidence 378999999999999999876 4799999999999988765 45677888898888877 7999999986 6 5
Q ss_pred ccc---ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWD---QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~---~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++. ++...+++++.++|||||.+++..+.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 554 34567999999999999999998764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=136.05 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--------------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-------------------------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-------------------------------- 330 (697)
.+.+|||||||+|.++..++.. ....|+++|+|+.|++.|+++...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 3579999999999955444433 234799999999999988763100
Q ss_pred ---cEEEeecccC-CCC-----CCCCccEEEeccccccc----cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 331 ---AMIGSFASKQ-LPY-----PSLSFDMLHCARCGVDW----DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 331 ---~~~~~~da~~-LPf-----pd~sFDlV~~~~~llh~----~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..+..+|+.. +|+ ++++||+|+|+.+ +++ .+++..+|+++.|+|||||+|++...
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC-LEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC-HHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhh-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2244457766 664 4567999999998 555 44678899999999999999999853
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-13 Score=136.08 Aligned_cols=104 Identities=16% Similarity=0.036 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------C---------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------L--------------------------- 329 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l--------------------------- 329 (697)
++.+|||||||+|.++..++..+ ..+|+++|+|+.|++.|+++. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45789999999999888777765 347999999999999887531 0
Q ss_pred -Cc-EEEeecccC-CCC---CCCCccEEEecccccccc---ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 330 -PA-MIGSFASKQ-LPY---PSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 330 -~~-~~~~~da~~-LPf---pd~sFDlV~~~~~llh~~---~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+ .+..+|... .|+ ..++||+|+|+.++++.. ++...+|++++|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 01 155667666 344 367999999999954433 344689999999999999999997543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=130.21 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=83.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||||||+|.++..+++.+. .++++|+++.+++.|+++ ++++.+.+.|+..+++ +++||+|+|..+ ++
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~-~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVV-FM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSS-GG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccc-hh
Confidence 47999999999999999999853 699999999999888754 5578888889988887 789999999998 45
Q ss_pred ccc--cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 360 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 360 ~~~--d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.+ +...+++++.++|||||++++...
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 443 345899999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=119.38 Aligned_cols=99 Identities=15% Similarity=0.009 Sum_probs=80.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+ ....++++|+++.+++.|+++ ++ ++.+...+........++||+|++..+ .
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~ 118 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS-G 118 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC-T
T ss_pred CCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC-C
Confidence 4799999999999999999884 346799999999999988764 43 466777777554444468999999876 3
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ +...++.++.++|||||++++..+.
T Consensus 119 ~---~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 119 G---MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp T---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 6778999999999999999998764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=127.18 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=83.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ +.++.+.++|+..++++ ++||+|+|..+.+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTI 116 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCch
Confidence 34799999999999999999885 3689999999999988754 56778888899888876 6899999875444
Q ss_pred ccc--ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWD--QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~--~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++. ++...+++++.++|||||.+++..+.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 443 34568999999999999999998764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=132.79 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=84.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.. ...++++|+|+.+++.|+++ ++ .+.+...|...+| ++||+|++..+
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~ 164 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA 164 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence 45799999999999999999872 24799999999999998875 33 3667777887775 78999999998
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+.|.. ++...+++++.++|||||++++.++....
T Consensus 165 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 165 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 44443 56789999999999999999999986644
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=131.46 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=85.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCC-CCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY-PSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPf-pd~sFDlV~~~~ 355 (697)
+..+|||||||+|.++..+++.+ ...++++|+|+.+++.|+++ +. ++.+.++++..+++ ++++||+|+|..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 34799999999999999988874 34799999999999998865 22 35678888888888 688999999998
Q ss_pred ccccc----cccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDW----DQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~----~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ +|+ .++...+|+++.++|||||++++.++.
T Consensus 142 ~-l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 142 S-FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp C-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred h-hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8 444 355678999999999999999999875
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=130.79 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=82.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C------------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P------------------------------ 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~------------------------------ 330 (697)
++.+|||||||+|.++..+++.+. ..|+++|+|+.|++.|+++.. +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 457899999999999999988753 579999999999999876521 1
Q ss_pred --c-EEEeecccCCC-CCC---CCccEEEecccccc---ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 331 --A-MIGSFASKQLP-YPS---LSFDMLHCARCGVD---WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 331 --~-~~~~~da~~LP-fpd---~sFDlV~~~~~llh---~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ .+..++...++ +++ ++||+|+|..++.+ +.++...+|.++.++|||||+|++.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 4 67777877754 355 89999999998442 3345678999999999999999998854
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=134.34 Aligned_cols=103 Identities=22% Similarity=0.355 Sum_probs=84.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCcEEEeecccCCC----CC--
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQLP----YP-- 344 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~LP----fp-- 344 (697)
...+|||||||+|.++..+++.+ ...++++|+|+.|++.|+++. .++.+.++|+..++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 34799999999999999998753 457999999999999887652 14567888888876 54
Q ss_pred CCCccEEEecccccccc-cc---HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 345 SLSFDMLHCARCGVDWD-QK---DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 345 d~sFDlV~~~~~llh~~-~d---~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++||+|+|..+ +||. .+ ...+|.++.++|||||+|+++++..
T Consensus 112 ~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 459999999998 7766 33 4689999999999999999998853
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=129.70 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=85.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--CcEEEeecccCCCCCC-----CCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPS-----LSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~~~~~~~da~~LPfpd-----~sFDlV~~~~ 355 (697)
...+|||||||+|.++..|++.+. +|+++|+|+.|++.|+++.. ++.+.++|+..+++.. ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 347899999999999999998864 68999999999999988743 5677788877765432 3499999998
Q ss_pred ccccccc--cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 356 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 356 ~llh~~~--d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+ +|+.+ +...+++++.++|||||++++.++....
T Consensus 133 ~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 133 G-FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp S-STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred h-hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 8 66665 5678999999999999999999876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=132.95 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------------------------- 328 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------------------------- 328 (697)
...+|||||||+|.++..++++. ....|+++|+++.|++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 45799999999999999999872 3457999999999999998752
Q ss_pred -----------------------------CCcEEEeecccCCC-----CCCCCccEEEeccccccccc------cHHHHH
Q 005432 329 -----------------------------LPAMIGSFASKQLP-----YPSLSFDMLHCARCGVDWDQ------KDGILL 368 (697)
Q Consensus 329 -----------------------------l~~~~~~~da~~LP-----fpd~sFDlV~~~~~llh~~~------d~~~~L 368 (697)
.++.+.++|....+ +.+++||+|+|..+ ++|.. +...++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v-l~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL-TKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH-HHHhhhcCCHHHHHHHH
Confidence 13556666665443 57789999999988 44432 456899
Q ss_pred HHHHHhccCCeEEEEEeC
Q 005432 369 LEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 369 ~El~RvLKPGG~Lvis~p 386 (697)
++++++|||||+|++...
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999999754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-12 Score=130.33 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=82.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH------HHHHHHHc----CC--CcEEEeec---ccCCCCCCCCc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS------QVQLTLER----GL--PAMIGSFA---SKQLPYPSLSF 348 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~------ml~~A~er----gl--~~~~~~~d---a~~LPfpd~sF 348 (697)
..+|||||||+|.++..++++......++++|+|+. +++.|+++ ++ ++.+...| ...+|+++++|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 479999999999999999987322357999999987 88887765 22 45667776 56677888999
Q ss_pred cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 349 DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|+|+|..+ +++.+++..+++.+.++++|||++++.+...
T Consensus 124 D~v~~~~~-l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 124 DRVVLAHS-LWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp SEEEEESC-GGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred EEEEEccc-hhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 99999998 5666777777777777777899999998654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=128.91 Aligned_cols=99 Identities=22% Similarity=0.347 Sum_probs=85.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..+++.. ....++++|+|+.+++.|++++..+.+...+...+|+++++||+|++..+ .
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~---- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P---- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C----
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h----
Confidence 34799999999999999998862 23579999999999999999887788888899999999999999998765 1
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.++.++.++|||||.+++.++....
T Consensus 159 ---~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 159 ---CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp ---CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred ---hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 3589999999999999999986543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-12 Score=130.40 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC-----CCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY-----PSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPf-----pd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..|++++ ..|+++|+|+.|++.|+++.... +...+...++. .+++||+|+|+.++.
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred cCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhhhH
Confidence 4799999999999999999985 46999999999999998874322 22334444433 257899999998855
Q ss_pred ccc-ccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 359 DWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 359 h~~-~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
|+. ++...++.++.++| |||.++++.....
T Consensus 122 ~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 122 RFTTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp GSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred hCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 554 33467999999999 9999999986543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=120.42 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 335 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 335 (697)
....+.+.+.+..... ....+|||+|||+|.++..+++.+ ...|+++|+++.|++.|+++ ++ ++.+.+
T Consensus 27 ~~~~~~l~~~l~~~~~-----~~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 99 (189)
T 3p9n_A 27 DRVRESLFNIVTARRD-----LTGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGLSGATLRR 99 (189)
T ss_dssp HHHHHHHHHHHHHHSC-----CTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE
T ss_pred HHHHHHHHHHHHhccC-----CCCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4444555555543110 134799999999999999888774 34699999999999988764 43 567788
Q ss_pred ecccCCC--CCCCCccEEEecccccccc-ccHHHHHHHHHH--hccCCeEEEEEeCCC
Q 005432 336 FASKQLP--YPSLSFDMLHCARCGVDWD-QKDGILLLEVDR--VLKPGGYFVWTSPLT 388 (697)
Q Consensus 336 ~da~~LP--fpd~sFDlV~~~~~llh~~-~d~~~~L~El~R--vLKPGG~Lvis~p~~ 388 (697)
+|+..++ +++++||+|++... +++. ++...++.++.+ +|||||++++..+..
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p-~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPP-YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCC-TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred ccHHHHHhhccCCCccEEEECCC-CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 8877664 45789999999877 5543 566789999999 999999999987643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=124.85 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=86.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++ ..++++|+++. .+.+..+++..+|+++++||+|+|..+ +|+ .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~-l~~-~ 128 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLS-LMG-T 128 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESC-CCS-S
T ss_pred CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehh-ccc-c
Confidence 34789999999999998884 35899999986 455677788889999999999999988 564 7
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
++..+|.++.++|+|||+++++++.... ..-+.+..+.+..+++.+..
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~i~~~~~~~----------~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSSRF----------EDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGGGC----------SCHHHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHhCCCCeEEEEEEcCCCC----------CCHHHHHHHHHHCCCEEEEE
Confidence 8889999999999999999999864311 12234455666677776543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=143.35 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=87.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----------C-CCcEEEeecccCCCCCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------G-LPAMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----------g-l~~~~~~~da~~LPfpd~sFDlV~ 352 (697)
..+|||||||+|.++..|++.+.....|+|+|+|+.|++.|+++ + .++.+.++|+..+++++++||+|+
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 48999999999999999998863446799999999999999762 2 246788999999999999999999
Q ss_pred eccccccccccHH--HHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~~d~~--~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|..+ +++.+++. .++.++.|+|||| .++++++..
T Consensus 802 ~~eV-LeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 802 CLEV-IEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EESC-GGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EeCc-hhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9998 55555554 5899999999999 889988765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=126.09 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-cCCCCC-CCCccEEEeccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYP-SLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da-~~LPfp-d~sFDlV~~~~~llh~ 360 (697)
...+|||||||+|.++..+++.+ ..++++|+|+.+++.++++..++.+.++|. +.+|++ +++||+|+|.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 34799999999999999999884 479999999999999999877788888888 678888 8999999987
Q ss_pred cccHHHHHHHHHHhccCCeEEE
Q 005432 361 DQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lv 382 (697)
.++..++.++.++|||||.++
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEE
Confidence 245578999999999999999
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=115.65 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecc-cCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS-KQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da-~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++. ..+...+. +.++..+++||+|++..+
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~- 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG- 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC--
T ss_pred CCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc-
Confidence 4799999999999999998873 356799999999999998865 443 12554554 333433379999999987
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++ ..+++++.++|||||++++.+...
T Consensus 104 ~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 104 LTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred ccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 443 579999999999999999988753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=113.72 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..+++. ...++++|+++.+++.|+++ ++ ++.+...+... ++++++||+|++..+
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-- 109 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-- 109 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTT---SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC--
T ss_pred CCEEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc--
Confidence 379999999999999999883 46799999999999988765 33 46677777766 677789999999876
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+...++.++.++ |||.+++.++.
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 5567899999999 99999999874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=129.45 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
++.+|||||||+|.++..++.+. ....|+++|++++|++.|+++ ++ ++.+.++|+..+| +++||+|++...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 45899999999998775544331 346799999999999998865 54 5678888888775 789999998644
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.++...+++++.|+|||||+|++...
T Consensus 198 ---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 46778999999999999999999874
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=118.61 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-fpd~sFDlV~~~~~ 356 (697)
..+|||+|||+|.++..+++.......++++|+++.+++.|+++ ++ ++.+.++|+..++ +.+++||+|++...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 47999999999999999988721234799999999999988765 33 5678888887776 66789999999865
Q ss_pred cccc--------cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~--------~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+.. ..+...++.++.++|||||++++.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 3221 1133579999999999999999987543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-11 Score=120.06 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=82.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
..+|||||||+|.++..+++.. +...++++|+++.+++.|+++ ++ ++.+..+++..++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 4789999999999999998873 346799999999999888764 44 5678888888877 77889999999865
Q ss_pred cccccc--------cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~--------d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..|.. ....++.++.++|||||.+++...
T Consensus 121 -~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 121 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred -CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 44332 125799999999999999999865
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=131.39 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||+|||+|.++..+++.+ ..|+++|+++.+++.|+++ ++.+.+...|....+.++++||+|+|+.. +
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp-~ 308 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPP-F 308 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCC-C
T ss_pred CCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCc-h
Confidence 34799999999999999999985 4799999999999888754 55678888898888887789999999977 5
Q ss_pred cc-----cccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DW-----DQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~-----~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|+ ..+...++.++.++|||||.++++....
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 55 3445689999999999999999987543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=120.74 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCcEEEeecccC----CCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
++.+|||||||+|.++..+++... ...|+++|+|+.|++ .|+++ .++.+...|+.. .+++ ++||+|+|.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 457999999999999999988742 357999999998654 34433 355666667665 3555 799999997
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. . ..+...++.++.|+|||||+|+++.+
T Consensus 134 ~~-~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 IA-Q--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp CC-S--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-C--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 32 2 22334569999999999999999853
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-11 Score=117.20 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|.++..+++. ...|+++|+++.+++.|+++ +++ +.+..+|+........+||+|++...
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~- 131 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG- 131 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC-
T ss_pred CCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc-
Confidence 479999999999999999988 35699999999999988764 444 67777887763333357999998864
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. +.. ++.++.++|||||+++++....
T Consensus 132 ~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 132 G----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp C----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred c----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 2 455 9999999999999999998753
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=121.44 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=82.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~~~ 356 (697)
..+|||||||+|.++..|++.. +...++|+|+|+.+++.|+++ ++ ++.+..+|+..++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 4689999999999999998873 346799999999999988764 44 5678888888776 78889999998765
Q ss_pred ccccccc--------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d--------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..|... ...++.++.++|||||.|++.+..
T Consensus 118 -~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred -CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 333321 257899999999999999998753
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=117.54 Aligned_cols=93 Identities=10% Similarity=0.022 Sum_probs=76.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
..+|||+|||+|.++..+++.+ .++++|+|+.|++. ..++.+.++|+.. ++++++||+|+|+.. +++.++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~-~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPP-YVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCC-CBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCC-CccCCc
Confidence 4699999999999999999885 79999999999987 3456677778776 677789999999877 554332
Q ss_pred ---------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 364 ---------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 364 ---------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
...++.++.+.| |||.+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 246899999999 99999998753
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=124.46 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-C--CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-P--fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..+++.. ....|+|+|+|+.+++.|+++ ++ ++.+.++|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 4789999999999999999874 346799999999999887654 44 577888887774 4 7889999999986
Q ss_pred ccccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. ..|.... ..++.++.|+|||||+|++++..
T Consensus 114 ~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 114 P-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp C-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred C-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 5 4443222 25999999999999999998764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-11 Score=112.48 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCC-CCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPS-LSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd-~sFDlV~~~~~ 356 (697)
..+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ ++ .+.+...+... ++++ ++||+|++..+
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence 4799999999999999999885 5799999999999988763 33 45666666555 3333 58999999876
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++ +...++.++.++|+|||.+++..+.
T Consensus 110 -~~---~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 110 -GG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp -TT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred -hH---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 32 3578999999999999999998874
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=124.83 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=81.5
Q ss_pred CCEEEEeCCCC---chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCC-----------CCCC
Q 005432 284 VRTILDIGCGY---GSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLP-----------YPSL 346 (697)
Q Consensus 284 ~~~VLDIGCGt---G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LP-----------fpd~ 346 (697)
..+|||||||+ |.++..+.+.. +...|+++|+|+.|++.|+++. ..+.+..+|+...+ ++.+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 47999999999 99877766542 3467999999999999998762 35677777775421 3335
Q ss_pred CccEEEecccccccccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 347 SFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 347 sFDlV~~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+||+|++..+ +|+.++ ...+|+++.++|||||+|++++...
T Consensus 157 ~~d~v~~~~v-lh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGM-LHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTT-GGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEech-hhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 8999999988 666555 6789999999999999999998765
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=121.49 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC---CCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp---d~sFDlV~~~ 354 (697)
...+|||||||+|.++..++... ....|+++|+++.|++.|++. ++ ++.+.++++..++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 45799999999999999998642 345799999999999888753 54 477888888888764 6799999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+ .+...++.++.++|||||++++...
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 5578899999999999999998753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=118.76 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...+|||||||+|.++..+++.+ ...++++|+++.+++.|+++ ++. +.+...|... +.+++||+|+++..
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~- 134 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANIL- 134 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESC-
T ss_pred CCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCc-
Confidence 34799999999999999998874 35799999999999988765 444 6677777654 44689999999876
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++ ...+++++.++|||||+++++++..
T Consensus 135 ~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 135 AEI---LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HHH---HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HHH---HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 332 4678999999999999999987643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=122.88 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----------CC-CcEEEeecccC-CC--CCCCCc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GL-PAMIGSFASKQ-LP--YPSLSF 348 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----------gl-~~~~~~~da~~-LP--fpd~sF 348 (697)
...+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++ +. ++.+..+|+.. ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34689999999999999999873 446799999999999887642 22 56788888876 67 788999
Q ss_pred cEEEecccccccccc--------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 349 DMLHCARCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 349 DlV~~~~~llh~~~d--------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|.|++.+. ..|... ...+|.++.++|||||.|++.+..
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99998754 333211 136999999999999999998764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=118.90 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCCC--CCCCC-ccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--YPSLS-FDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~LP--fpd~s-FDlV~~ 353 (697)
..+|||+|||+|.++..++.++. ..|+++|+|+.|++.|+++ ++ ++.+..+|+..+. +++++ ||+|++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 37899999999999998777753 4799999999999988764 43 5677777876643 24678 999999
Q ss_pred ccccccccccHHHHHHHH--HHhccCCeEEEEEeCCC
Q 005432 354 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El--~RvLKPGG~Lvis~p~~ 388 (697)
... ++ ..+...++.++ .++|||||.++++....
T Consensus 132 ~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 876 44 34566788888 77899999999987643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=117.29 Aligned_cols=102 Identities=17% Similarity=0.067 Sum_probs=80.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCC-CCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~L-Pfpd~sFDlV~~~~~ 356 (697)
+..+|||+||| +|.++..+++.. ...++++|+++.+++.|+++ ++++.+.++|+..+ ++++++||+|+|+..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 45899999999 999999999873 45799999999999888754 55677887776433 466789999999865
Q ss_pred ccccccc-------------------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQK-------------------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d-------------------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..+ ...++.++.++|||||++++..+.
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 133 -YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp -CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred -CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 332211 367899999999999999998664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-11 Score=116.51 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+ .+++++|+++.+++.|+++ ++ ++.+..+|....+.++++||+|++..+ .
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~ 153 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA-P 153 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB-C
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc-h
Confidence 4899999999999999999883 5799999999999988765 33 467778888777777789999999987 4
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++..+ ++.++|||||++++..+.
T Consensus 154 ~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhhH------HHHHhcccCcEEEEEEcC
Confidence 44443 689999999999999875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=121.62 Aligned_cols=103 Identities=15% Similarity=0.040 Sum_probs=80.1
Q ss_pred ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc---cCCCCCCCCccEEEec
Q 005432 281 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS---KQLPYPSLSFDMLHCA 354 (697)
Q Consensus 281 ~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da---~~LPfpd~sFDlV~~~ 354 (697)
..++.+|||+|||+|.++..+++.-.....|+++|+++.|++.++++. .++.....+. ...++..+++|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 345689999999999999999987335567999999999999887652 2344444443 3456777899999875
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .+..+...++.++.++|||||+++++..
T Consensus 155 ~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 155 V---AQPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp C---CCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c---cCChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 3 3345667899999999999999999864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=133.52 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----------C-
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G- 328 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----------g- 328 (697)
...+..+.+.+...++ .+|||||||+|.++..++... ....++|+|+++.+++.|++. |
T Consensus 159 ~~~i~~il~~l~l~~g--------d~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl 229 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK 229 (438)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455556666555444 899999999999999988652 233599999999998887641 3
Q ss_pred --CCcEEEeecccCCCCCC--CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 329 --LPAMIGSFASKQLPYPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 329 --l~~~~~~~da~~LPfpd--~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.++.+.++|+..+|+++ ..||+|+++.. + +.++....|.++.|+|||||.|+++++...
T Consensus 230 ~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~-~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 230 KHAEYTLERGDFLSEEWRERIANTSVIFVNNF-A-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHTCSEEEECCT-T-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CCCCeEEEECcccCCccccccCCccEEEEccc-c-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 35778889998888754 47999999865 3 346777899999999999999999876543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=120.18 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HH----cCC-CcEEEeecccCCCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LE----RGL-PAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A----~e----rgl-~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
..+|||||||+|.++..|++.. +...++++|+|+.|++.+ ++ .+. ++.+.++|+..+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 4789999999999999999873 346899999999988753 21 233 567888999999998877 887744
Q ss_pred ccc--c--cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCG--V--DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~l--l--h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
... . ++.+++..+|+++.|+|||||.++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 321 1 2445667899999999999999999753
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=127.60 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.+ ...|+++|+| +|++.|+++ ++. +.+..+++..+++++++||+|+|..+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCCEEEEEeccchHHHHHHHHCC--CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 34799999999999999999885 3479999999 488877653 444 77888999999999999999999653
Q ss_pred c--ccccccHHHHHHHHHHhccCCeEEEEE
Q 005432 357 G--VDWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 357 l--lh~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
. +++..+...++.++.|+|||||++++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2 334466788999999999999999743
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-11 Score=127.45 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||||||+|.++..+++.+ ...|+++|.++ |++.|+++ + ..+.+..+++..+++++++||+|++..+.
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 141 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence 4799999999999999999885 34799999996 88887654 3 35678888999999998899999997631
Q ss_pred --ccccccHHHHHHHHHHhccCCeEEE
Q 005432 358 --VDWDQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 358 --lh~~~d~~~~L~El~RvLKPGG~Lv 382 (697)
+.+..+...++.++.++|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3334556789999999999999998
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-11 Score=123.79 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=87.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEE-EeecccCCC---CCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~LP---fpd~sFDlV~~~~~ll 358 (697)
...+|||||||||.++..|++++ ...|+++|+|+.|++.+.++...+.. ...++..++ ++..+||+|+|..+ +
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s-f 161 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS-F 161 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCS-S
T ss_pred cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEee-H
Confidence 34799999999999999999885 34799999999999887654433322 222333333 34456999999876 3
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCCCChh--------hhhhhHH-hhhhhhhhhhhhhccceEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------AFLRNKE-NQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~--------~~lr~~e-~~~~W~~l~~la~~~~w~ll 418 (697)
+. ...+|.++.|+|||||.|++...+.... +..++.. +...-+.+..++...+|...
T Consensus 162 ~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 162 IS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp SC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred hh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 32 3679999999999999999974221110 0111111 22344556667777888764
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-11 Score=117.07 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
..+|||||||+|.++..+++.+ ..++++|+++.+++.|+++.. ++.+..++......++++||+|++..+ +++
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWAT-APT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSB-BSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCc-HHH
Confidence 4799999999999999999885 579999999999999987632 567777777663334679999999988 444
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.. .++.++|||||++++..+.
T Consensus 147 ~~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 147 LL------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CC------HHHHHTEEEEEEEEEEECS
T ss_pred HH------HHHHHHcCCCcEEEEEEcC
Confidence 32 3689999999999999764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=116.72 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----C-CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----g-l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.-.....++++|.++.+++.|+++ + ..+.+...|....++++++||+|++.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~--- 173 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD--- 173 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE---
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC---
Confidence 47999999999999999988711235799999999999988765 4 34667788888888888899999984
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+++..++.++.++|||||++++..+.
T Consensus 174 ---~~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 174 ---LMEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp ---SSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred ---CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 245568999999999999999999875
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=120.92 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCch----HHHHHhhc-CC-c-eeEEEEecCCHHHHHHHHHcC----------------------------
Q 005432 284 VRTILDIGCGYGS----FGAHLFSK-EL-L-TMCIANYEASGSQVQLTLERG---------------------------- 328 (697)
Q Consensus 284 ~~~VLDIGCGtG~----~a~~La~~-g~-~-~~sV~gvD~S~~ml~~A~erg---------------------------- 328 (697)
..+|||+|||||. ++..|++. +. . ...|+|+|+|+.|++.|++..
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3689999999998 55556554 21 1 257999999999999998641
Q ss_pred --------CCcEEEeecccCCCCC-CCCccEEEeccccccccccH--HHHHHHHHHhccCCeEEEEE
Q 005432 329 --------LPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 329 --------l~~~~~~~da~~LPfp-d~sFDlV~~~~~llh~~~d~--~~~L~El~RvLKPGG~Lvis 384 (697)
-.+.|.+.|....|++ .+.||+|+|.++++++ ++. .+++.+++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0355677777776665 5789999999985554 444 67999999999999999984
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-11 Score=112.50 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
...+|||+|||+|.++..+++.......++++|.++ +++. .++.+...+...++ +++++||+|++.
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 347999999999999999988711235799999998 6543 35667777887776 777899999998
Q ss_pred cccccccccH-----------HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d~-----------~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.+ +++..+. ..++.++.++|||||.+++.++...
T Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 96 MA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp CC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred CC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 76 5554444 5899999999999999999887543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=114.48 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..++.++. ..|+++|+++.|++.|+++ ++ ++.+.+.|+.. ++..+++||+|++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 37899999999999998877753 3799999999999988754 33 56778788766 5667789999999866
Q ss_pred ccccccHHHHHHHHHH--hccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDR--VLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~R--vLKPGG~Lvis~p~ 387 (697)
++ ......++.++.+ +|+|||+++++...
T Consensus 132 ~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 44 3456678888865 59999999998763
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=125.95 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+|||+|||+|.++..+++.+ +...|+++|+++.+++.|+++ ++ .+.+...|... ++++++||+|+|+..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 799999999999999999874 346799999999999888754 32 35567777665 567789999999977
Q ss_pred ccccc----cc-HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWD----QK-DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~----~d-~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+|.. .. ...++.++.++|||||.++++...
T Consensus 302 -fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 302 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp -C-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred -cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 4432 12 236899999999999999998653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=127.24 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=79.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~ 360 (697)
.+|||||||+|.++..+++.+ ....++++|+|+.+++.|+++ ++...+...|... +.+++||+|+|+.. +|+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--~~~~~fD~Iv~~~~-~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISNPP-FHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEECCC-CCS
T ss_pred CeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc--cccCCeeEEEECCC-ccc
Confidence 689999999999999999875 335799999999999888764 5566666666544 34679999999987 553
Q ss_pred -----cccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 361 -----DQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 361 -----~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+...+++++.++|||||.+++....
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 234468999999999999999998764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=124.96 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=83.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC--CCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL--PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L--Pfpd~sFDlV~~~ 354 (697)
+..+|||||||+|.++..++++. +...++++|. +.+++.|+++ ++ .+.+..+|.... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45799999999999999999863 4467999999 9999988865 32 467777887765 576 789999999
Q ss_pred ccccccccc-HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.++++|.++ ...+|++++++|||||++++.++...
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 985555533 25789999999999999999886543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=112.71 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++ ++.+...+...++ ++++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4799999999999999998763 345799999999999888754 44 3667777877766 4578999998643
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4567899999999999999999864
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=118.98 Aligned_cols=98 Identities=19% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC---CCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfp---d~sFDlV~~~ 354 (697)
...+|||||||+|..+..++... ....|+++|+++.+++.|++. ++ ++.+..++++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 45799999999999999998763 346799999999999888754 55 477888888887753 4799999997
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+ .+...++.++.++|||||+|++...
T Consensus 159 a~-----~~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 159 AV-----APLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp SS-----CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred Cc-----CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 54 3457899999999999999998654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=112.41 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccC-CC-C--CCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ-LP-Y--PSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~-LP-f--pd~sFDlV~~~~ 355 (697)
..+|||+|||+|.++..+++.+.. ++++|+++.+++.|+++ ++++.+.+.|+.. ++ + .+++||+|++..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 478999999999999999988633 99999999999888764 4467777777655 22 1 134899999987
Q ss_pred ccccccccHHHHHHHHH--HhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p~~ 388 (697)
. ++ .+...++..+. ++|||||.++++.+..
T Consensus 119 ~-~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 P-YA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp C-TT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred C-Cc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 6 43 34456777777 9999999999988754
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.7e-11 Score=112.37 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=85.5
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEE
Q 005432 260 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMI 333 (697)
Q Consensus 260 ~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~ 333 (697)
.....+.+.+.+... ....+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++ ++ ++.+
T Consensus 28 ~~~~~~~~~~~l~~~-------~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 98 (187)
T 2fhp_A 28 TDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEV 98 (187)
T ss_dssp CHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred HHHHHHHHHHHHHhh-------cCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcceEE
Confidence 344455555555311 134799999999999999888864 35799999999999888754 33 3667
Q ss_pred EeecccCC----CCCCCCccEEEeccccccccccHHHHHHHH--HHhccCCeEEEEEeCCC
Q 005432 334 GSFASKQL----PYPSLSFDMLHCARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 334 ~~~da~~L----Pfpd~sFDlV~~~~~llh~~~d~~~~L~El--~RvLKPGG~Lvis~p~~ 388 (697)
..+|+... ++++++||+|++... ++ ..+....+..+ .++|||||++++..+..
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 77776552 233679999999876 44 23456677777 89999999999987754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=121.22 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=84.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.. +...++++|++ .+++.|+++ ++ .+.+...|....+++++ ||+|++.++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 34799999999999999998873 34579999999 999888765 33 36778888877777764 999999998
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++++. ++...+|+++.++|||||++++.++...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 55553 2236899999999999999999987654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-11 Score=118.15 Aligned_cols=101 Identities=8% Similarity=-0.017 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCC-----CCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPS-----LSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~LPfpd-----~sFDlV~~ 353 (697)
...+|||+|||+|.++..+++.. ....++++|+++.+++.|+++. .++.+.++|+.. ++++ ++||+|+|
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVS 107 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEE
Confidence 34799999999999999999874 3467999999999999887652 245566666665 5555 89999999
Q ss_pred cccccccccc--------------------------HHHHHHHHHHhccCCeE-EEEEeC
Q 005432 354 ARCGVDWDQK--------------------------DGILLLEVDRVLKPGGY-FVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d--------------------------~~~~L~El~RvLKPGG~-Lvis~p 386 (697)
+.. ++...+ ...++.++.++|||||+ +++..+
T Consensus 108 npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 108 NPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp CCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred CCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 754 221111 05688999999999999 555443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-10 Score=116.49 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP--fpd~sFDlV~~~~ 355 (697)
..+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ ++ .+.+..+|+..++ +++++||+|+|+.
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 47999999999999999998853 3799999999999988764 44 3677888887765 5678999999975
Q ss_pred ccccc----c---------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDW----D---------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~----~---------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.. . .+...++.++.++|||||++++..+.
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 42221 0 12356999999999999999997653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=119.71 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CC-CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||+|||+|.++..+++.......++++|+++.+++.|+++ +. ++.+..+|+.. ++++++||+|++.
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-- 186 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-- 186 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC--
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc--
Confidence 347999999999999999988611245799999999999988765 43 46677778766 6777899999983
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+++..++.++.++|||||+++++++.
T Consensus 187 ----~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 187 ----IPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp ----CSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 245668999999999999999999874
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=120.96 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.. +...++++|+ +.+++.|+++ ++ .+.+...|.. .+++. +||+|+|.++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 45799999999999999998863 4467899999 9999888764 33 4677777775 46665 8999999999
Q ss_pred ccccccc-HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+++|.++ ..++|++++++|||||++++.++...
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 5555432 36899999999999999999987554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-11 Score=112.26 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfpd~sFDlV~~~~~ 356 (697)
..+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++ ++ .+.+...|+.. ++..+++||+|++...
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 4799999999999999999874 35799999999999988764 33 35667777665 4444567999999865
Q ss_pred cccccccHHHHHHHHH--HhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~--RvLKPGG~Lvis~p~~ 388 (697)
++. .....++..+. ++|||||++++.....
T Consensus 110 -~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 110 -YAK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp -SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -CCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 332 23456777776 9999999999988754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=118.37 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----C---CCcEEEeecccCCCCCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G---LPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-----g---l~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
..+|||+|||+|.++..+++.......++++|.++.+++.|+++ + .++.+...|+...++++++||+|++..
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 179 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence 37999999999999999988521235799999999999988765 3 356778888888888888999999842
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++.++.++|+|||++++..+..
T Consensus 180 ------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 180 ------LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 345579999999999999999998853
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.2e-11 Score=118.70 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC-HHHHHHH---HHc----CC-CcEEEeecccCCCCC-CCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS-GSQVQLT---LER----GL-PAMIGSFASKQLPYP-SLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S-~~ml~~A---~er----gl-~~~~~~~da~~LPfp-d~sFDlV~ 352 (697)
...+|||||||+|.++..|++.. ....|+|+|+| +.|++.| +++ ++ ++.+.++++..+|.. .+.+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 34789999999999999998653 45679999999 7777776 432 44 467888888888632 13455554
Q ss_pred ecccc----ccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 353 CARCG----VDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 353 ~~~~l----lh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+++.. .+...+...+|.++.|+|||||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 44320 0111223468999999999999999944
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-11 Score=118.50 Aligned_cols=100 Identities=10% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||||||+|.++..++.... .++++++|+++.|++.++++ |+...+...+.... .+.++||+|++..+ +
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~-L 125 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKM-L 125 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETC-H
T ss_pred CCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhH-H
Confidence 357999999999999999977643 34899999999999988754 55544444454433 45678999999988 6
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|+.++.+.++.++.+.|||||+|+-..
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 666666677889999999999887654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.63 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=84.5
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
.....+.+.+...+ +.+|||||||+|.++..+++.+.....|+++|+++.+++.|+++ ++ ++.+...
T Consensus 62 ~~~~~l~~~l~~~~--------~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~ 133 (317)
T 1dl5_A 62 SLMALFMEWVGLDK--------GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (317)
T ss_dssp HHHHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 33445555554433 37999999999999999998753335699999999999988765 44 3677778
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|....+.++++||+|++..+ +++.. .++.++|||||.++++..
T Consensus 134 d~~~~~~~~~~fD~Iv~~~~-~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 134 DGYYGVPEFSPYDVIFVTVG-VDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCGGGCCEEEEEECSB-BSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred ChhhccccCCCeEEEEEcCC-HHHHH------HHHHHhcCCCcEEEEEEC
Confidence 88776656679999999988 44443 578899999999999865
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=118.22 Aligned_cols=122 Identities=7% Similarity=0.115 Sum_probs=91.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||+|||+|.++..+++.+.. .|+++|+++.+++.|+++ ++. +.+.++|+..++. +++||+|++...
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p- 201 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV- 201 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc-
Confidence 479999999999999999988643 699999999999988754 443 5678888888876 679999998643
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEee
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~ 419 (697)
.....++.++.++|||||++++.+..+.... .....+.+...++..+|+...
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc------cccHHHHHHHHHHHcCCeeEE
Confidence 2335789999999999999999876532100 012234455666677776644
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=114.48 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCC-C----CCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY-P----SLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPf-p----d~sFDlV 351 (697)
+.+|||||||+|..+..+++.......|+++|+++.+++.|+++ ++ .+.+..+++.. ++. + .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 47999999999999999998522346799999999999988764 44 36677777643 332 2 2689999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... .++..+...++.++ ++|||||++++.+..
T Consensus 139 ~~d~~-~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 139 FLDHW-KDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EECSC-GGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEcCC-cccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99875 44333444677777 999999999998765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=114.54 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccC----CCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQ----LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~----LPfpd~sFDlV~~~~ 355 (697)
+..+|||||||+|.++..+++... ...|+++|+++.+++.|+++. .++.+...++.. ++++ ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe-
Confidence 457999999999999999998732 357999999999998887642 356677778777 7776 789999832
Q ss_pred ccccccccH---HHHHHHHHHhccCCeEEEEE
Q 005432 356 CGVDWDQKD---GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 356 ~llh~~~d~---~~~L~El~RvLKPGG~Lvis 384 (697)
.+++ ..++.++.++|||||+++++
T Consensus 151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 -----VAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 2333 67899999999999999997
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=112.44 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.+.....++++|+++.+++.|+++ ++ ++.+...+.......+++||+|++..+ +
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-~ 156 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA-G 156 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB-B
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc-h
Confidence 47999999999999999998742235799999999999988765 33 356666666432223678999999988 4
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++.. .++.++|||||.+++..+.
T Consensus 157 ~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 157 PKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEESS
T ss_pred HHHH------HHHHHHcCCCcEEEEEECC
Confidence 4443 4889999999999998864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-11 Score=122.25 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEE------eecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG------SFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~------~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..|++++. ..|+++|+|+.|++.|+++...+... ......++ ...||.+.+..+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~D~v 112 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFE--QGRPSFTSIDVS 112 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCC--SCCCSEEEECCS
T ss_pred CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcC--cCCCCEEEEEEE
Confidence 347999999999999999998853 37999999999999987764333221 11111222 112444444433
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCChh-hh--h------hhH-HhhhhhhhhhhhhhccceEEe
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ-AF--L------RNK-ENQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~-~~--l------r~~-e~~~~W~~l~~la~~~~w~ll 418 (697)
+.+. ..+|.++.|+|||||++++... +... .+ . ++. ......+.+..+++..+|+..
T Consensus 113 ~~~l----~~~l~~i~rvLkpgG~lv~~~~-p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~ 179 (232)
T 3opn_A 113 FISL----DLILPPLYEILEKNGEVAALIK-PQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVK 179 (232)
T ss_dssp SSCG----GGTHHHHHHHSCTTCEEEEEEC-HHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred hhhH----HHHHHHHHHhccCCCEEEEEEC-cccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEE
Confidence 2221 5799999999999999999741 1110 00 0 011 112234556666777788764
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=125.88 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.+. ..|+++|.| .|++.|+++ ++. +.+..+++..++++ ++||+|+|...
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence 457999999999999999999863 379999999 899887654 443 67888899999887 79999999654
Q ss_pred ccccc---ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 357 GVDWD---QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~---~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.++. .....++.++.++|||||+++++.
T Consensus 139 -~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 -GYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp -BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred -hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3322 456789999999999999998654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=120.72 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 334 (697)
..|.+.+.+.+.... ..+|||||||+|.++..+++.+ ...|+++|.+ .|++.|+++ ++ .+.+.
T Consensus 24 ~~y~~ai~~~~~~~~--------~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~ 92 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFK--------DKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNGFSDKITLL 92 (328)
T ss_dssp HHHHHHHHHHHHHHT--------TCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhhHhhcC--------CCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEE
Confidence 344555554444333 3799999999999999999875 3479999999 588877654 43 36778
Q ss_pred eecccCCCCCCCCccEEEecccc--ccccccHHHHHHHHHHhccCCeEEEE
Q 005432 335 SFASKQLPYPSLSFDMLHCARCG--VDWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~l--lh~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
.+++..+++++++||+|+|.... +.+......++.++.++|||||.++.
T Consensus 93 ~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 93 RGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp ESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88998999888899999997542 22345567899999999999999984
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=115.14 Aligned_cols=99 Identities=14% Similarity=0.002 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCcEEEeecccCCC---CCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~da~~LP---fpd~sFDlV~~~~ 355 (697)
++.+|||+|||+|.++..+++.......|+++|+++.|+ +.++++ .++.+..+|+.... ...++||+|++..
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEecC
Confidence 568999999999999999987633345799999999885 344443 46677777776532 2246899999885
Q ss_pred ccccccccHHH-HHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGI-LLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~-~L~El~RvLKPGG~Lvis~p 386 (697)
. . ++... ++..+.++|||||+|+++..
T Consensus 155 a-~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 155 A-Q---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp C-C---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-C---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 5 2 34444 45566779999999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.2e-11 Score=119.07 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=79.2
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC---CCCC-CCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---Pfpd-~sFDlV~~~~~ 356 (697)
+.+|||||||+|..+..|++. ......|+++|+++.|++.|+....++.+.++|+..+ ++.+ .+||+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 379999999999999999876 1234679999999999988774445677888888774 5444 47999998754
Q ss_pred cccccccHHHHHHHHHH-hccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDR-VLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~R-vLKPGG~Lvis~p 386 (697)
| .+...+|.++.| +|||||+|++.+.
T Consensus 162 --~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 --H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp --C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred --h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 2 356789999998 9999999999876
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-12 Score=125.07 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=80.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.+ ..|+++|+++.+++.|+++ ++ ++.+.++|+..++ ++++||+|++...
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~- 153 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP- 153 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC-
T ss_pred CCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC-
Confidence 4799999999999999999885 5799999999999988754 44 5778888887776 5679999999987
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEE
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
+++..+....+.++.++|+|||++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 666666656888999999999997764
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-10 Score=120.66 Aligned_cols=101 Identities=23% Similarity=0.229 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..++++. +...++++|+ +.+++.|+++ ++ .+.+...|.. .+++. .||+|++..+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred cCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 45899999999999999999873 4567899999 9999888764 33 4677777876 56776 8999999999
Q ss_pred cccccccHH--HHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~--~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++| ++.. .+|++++++|||||++++.++..
T Consensus 278 lh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 278 LHDW-DDDDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp GGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred hccC-CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 5444 4443 79999999999999999988654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-10 Score=114.37 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCC--CCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYP--SLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfp--d~sFDlV~~~ 354 (697)
+.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++ .+.+..+++.. ++.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 47999999999999999998732246799999999999988765 44 36677777655 3432 3489999986
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.. ..+...++.++.++|||||++++.+...
T Consensus 144 ~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 144 AD----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp SC----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred Cc----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 43 3445679999999999999999987643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=114.54 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.-.....++++|.++.+++.|+++ ++. +.+...|+... +++++||+|++..
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~-- 170 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL-- 170 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS--
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC--
Confidence 47999999999999999998721346799999999999988765 443 67777777644 7788999999842
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++..++.++.++|||||++++..+..
T Consensus 171 ----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 171 ----PQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp ----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ----CCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 455679999999999999999988753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-11 Score=113.57 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCC---CCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPY---PSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPf---pd~sFDlV~~~~~ll 358 (697)
++.+|||||||. +.+|+|+.|++.|+++.. .+.+.++++..+++ ++++||+|+|..+ +
T Consensus 12 ~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-P 73 (176)
T ss_dssp TTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-T
T ss_pred CCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh-h
Confidence 458999999996 128999999999988742 47788889988887 8899999999988 6
Q ss_pred ccc-ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWD-QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~-~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+. ++...+|++++|+|||||+|++..+.
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence 666 78889999999999999999997653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-11 Score=130.98 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=80.2
Q ss_pred CCCEEEEeCCC------CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC------CCCccE
Q 005432 283 GVRTILDIGCG------YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP------SLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCG------tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfp------d~sFDl 350 (697)
...+||||||| +|..+..+++..++...|+++|+|+.|. ....++.+.++|+..+|+. +++||+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 45799999999 7777777776533456899999999983 2345678889999998887 789999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+|..+ |+..+...+|++++|+|||||+|++.+..
T Consensus 292 Visdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999754 44566788999999999999999999865
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=114.53 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCCcEEEeecccC---CCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ---LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~~~~~~~da~~---LPfpd~sFDlV~~~~ 355 (697)
...+|||+|||+|.++..+++.......++++|+++.|++ .|+++ .++.+..+|+.. +++.+++||+|++..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 4579999999999999999987212357999999987654 44443 467777778766 456678999999964
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. .......++.++.++|||||+++++..
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 4 122224568899999999999999754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=113.45 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-CCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-fpd~sFDlV~~~~ 355 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++ ++.+..+++... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 4799999999999999999842 356899999999999988764 43 467777777553 3 3368999999764
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. ..+...++.++.++|||||+|++.+..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 3 345668999999999999999996653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=114.58 Aligned_cols=103 Identities=22% Similarity=0.224 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CC-CcEEEeecccC-CC--CCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GL-PAMIGSFASKQ-LP--YPSL 346 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl-~~~~~~~da~~-LP--fpd~ 346 (697)
...+|||||||+|.++..+++.+ ....++++|+|+.+++.|+++ ++ ++.+..+|+.. ++ ++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 34789999999999999999875 345799999999999887653 43 56777888776 66 7788
Q ss_pred CccEEEeccccccccccH--------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 347 SFDMLHCARCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 347 sFDlV~~~~~llh~~~d~--------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+||.|+.... -.|.... ..++.++.++|||||+|++.+..
T Consensus 128 ~~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 128 QLSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp CEEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999986543 2221100 47999999999999999997653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=110.94 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C------CCcEEEeecccCCCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~LPfpd~sFDlV~ 352 (697)
+..+|||||||+|.++..+++.......++++|+++.+++.++++ + .++.+...|....+.++++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 347999999999999999987622235799999999999888754 2 256677778776666677899999
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.....+ ++.++.++|||||+++++...
T Consensus 157 ~~~~~~~-------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 157 VGAAAPV-------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp ECSBBSS-------CCHHHHHTEEEEEEEEEEESC
T ss_pred ECCchHH-------HHHHHHHhcCCCcEEEEEEec
Confidence 9877322 346889999999999998764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=122.14 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~ 334 (697)
..|.+.+.+.+... +..+|||||||+|.++..+++.+ ...|+++|.|+ |++.|+++ ++ .+.+.
T Consensus 36 ~~y~~~i~~~l~~~--------~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~ 104 (348)
T 2y1w_A 36 GTYQRAILQNHTDF--------KDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVI 104 (348)
T ss_dssp HHHHHHHHHTGGGT--------TTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHhccccC--------CcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEE
Confidence 34445555444433 34799999999999999999875 34799999996 88777653 43 46778
Q ss_pred eecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 335 SFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+...++++ ++||+|++.....|+. +.....+.++.++|||||.++++.
T Consensus 105 ~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 105 PGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EcchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 8888888776 5899999997756654 344678889999999999999654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=120.27 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.. ....++++|+ +.+++.|+++ ++ .+.+...|... +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 35799999999999999999874 3467899999 9999988764 33 46777777654 4554 4999999998
Q ss_pred cccccccH--HHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKD--GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~--~~~L~El~RvLKPGG~Lvis~p 386 (697)
++++ ++. ..+|+++.++|||||++++.++
T Consensus 258 l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNW-SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCC-CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 5554 444 4799999999999999999887
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=119.01 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=82.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..++++. +...++++|+ +.+++.|+++ ++ .+.+...|....|+++. |+|++..+
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~v 265 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRI 265 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESC
T ss_pred CCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEech
Confidence 34799999999999999999873 3467999999 9999888764 43 36788888888877753 99999999
Q ss_pred ccccccc-HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|.++ ...+|+++.++|||||++++.++..
T Consensus 266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5555432 5689999999999999999988543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=117.11 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ ++.+.+...+.... +++++||+|+++.. .+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~-~~ 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLY-AE 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECC-HH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCc-HH
Confidence 47999999999999999998863 799999999999888764 44456666665442 45678999999754 32
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
....++.++.++|||||++++++..
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 2467999999999999999998764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=109.49 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------------------
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------------------- 342 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP-------------------- 342 (697)
..+|||||||+|.++..++++... ...++++|+++.+ ....+.+.++|...++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDY 96 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHH
Confidence 478999999999999999987321 4679999999831 1124667777877776
Q ss_pred -----CCCCCccEEEecccccccc----ccH-------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 343 -----YPSLSFDMLHCARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 343 -----fpd~sFDlV~~~~~llh~~----~d~-------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++++||+|+|..+ .++. .+. ..++.++.++|||||.|++..+.
T Consensus 97 ~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 97 KLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 56789999999876 4442 122 13789999999999999997754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=119.56 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CcEEEeecccCCC----CC--CCCcc
Q 005432 283 GVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLP----YP--SLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGt--G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~LP----fp--d~sFD 349 (697)
+.++|||||||+ +.++..++++-.+...|+++|+|+.|++.|+++-. .+.+.++|...++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457999999997 44445554442345689999999999999887521 3667888877652 11 35566
Q ss_pred -----EEEecccccccccc---HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 350 -----MLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 350 -----lV~~~~~llh~~~d---~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.|+++.+ +||.++ +..+++++.++|+|||+|++++....
T Consensus 158 ~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 5777766 888766 46799999999999999999987654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=113.44 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=77.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCC-C-CCCCCccEEEecc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-P-YPSLSFDMLHCAR 355 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~L-P-fpd~sFDlV~~~~ 355 (697)
.+|||||||+|..+..|++.-.....++++|.++.+++.|++. ++. +.+..+++... + +++++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4899999999999999988532346799999999999888754 444 66677665543 2 4468999999864
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. ..+...++.++.++|||||++++.+..
T Consensus 138 ~----~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 138 S----PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp C----TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred c----HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3 244567999999999999999996553
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=114.25 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC---------cEEEeecccCC-------CCCCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP---------AMIGSFASKQL-------PYPSLS 347 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~---------~~~~~~da~~L-------Pfpd~s 347 (697)
..+|||+|||+|.++..++++. ....++++|+++.+++.|+++... +.+...|...+ ++++++
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 4799999999999999999874 346899999999999999875322 56777887776 366789
Q ss_pred ccEEEecccccc----------------c-cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 348 FDMLHCARCGVD----------------W-DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 348 FDlV~~~~~llh----------------~-~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
||+|+|+..... . ......++.++.++|||||+|++..+
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999843111 1 12356789999999999999999765
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-10 Score=110.74 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC----ceeEEEEecCCHHHHHHHHHc----C------CCcEEEeecccCCC----CCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLP----YPS 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~----~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~LP----fpd 345 (697)
..+|||||||+|.++..+++... ....++++|+++.+++.|+++ + .++.+..+|..... .+.
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 47999999999999999988743 335799999999999988765 3 25677778877765 556
Q ss_pred CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++||+|++... .++ ++.++.++|||||++++..+.
T Consensus 161 ~~fD~I~~~~~-~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 161 GLFDAIHVGAS-ASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCEEEEEECSB-BSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CCcCEEEECCc-hHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 78999999877 332 357889999999999998763
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-10 Score=117.77 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCCCC--CCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPY--PSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~LPf--pd~sFDlV 351 (697)
.+.+|||||||+|.++..++++. ....++++|+++.+++.|+++. ..+.+..+|+..++. ++++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 45799999999999999998762 3467999999999999988753 346677777766553 47899999
Q ss_pred EeccccccccccH----HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 352 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 352 ~~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++... .++.+.. ..+++++.++|||||++++....+
T Consensus 174 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 213 (304)
T 3bwc_A 174 IIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI 213 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 99755 3433222 578999999999999999987644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-10 Score=111.16 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-CCC--CCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP--SLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-Pfp--d~sFDlV~~~ 354 (697)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++ .+.+..+++... +.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 3799999999999999998873 246799999999999988765 44 366777776653 432 5789999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.. . .+...++.++.++|||||++++.+..
T Consensus 134 ~~-~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 134 AA-K---GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp GG-G---SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CC-H---HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 65 2 35678999999999999999998653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-10 Score=117.81 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=80.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+|||||||+|.++..+++.. +...++++|+ +.+++.|+++. ..+.+...|... +++ ++||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 799999999999999998873 3457899999 99998887652 246777777766 566 6899999999955
Q ss_pred cccccH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+|. +. ..+|+++.++|||||++++.+...
T Consensus 245 ~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 245 DLD-EAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp GCC-HHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CCC-HHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 554 33 389999999999999999998653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=121.55 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. ....++++|+ +.+++.|++. ..+.+..+|... ++++ ||+|++..+ +|+.+
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~-lh~~~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAV-CHNWS 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESS-GGGSC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecc-cccCC
Confidence 45799999999999999999875 3457889999 8999877653 346777788766 6765 999999998 45455
Q ss_pred cHH--HHHHHHHHhccCCeEEEEEeCC
Q 005432 363 KDG--ILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~--~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+.. .+|++++++|||||++++.++.
T Consensus 282 d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 282 DEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 565 8999999999999999998643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-09 Score=114.74 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccc--
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC-- 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~-- 356 (697)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++ ++.+.+.|+..++..+++||+|++...
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 47999999999999999997632346799999999999888754 55 567788888877655678999998421
Q ss_pred ---ccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 ---GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 ---llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.++..++ ...+|.++.++|||||++++++....
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 1221111 14789999999999999999886543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=112.43 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=78.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++.-.....++++|.++.+++.|+++ ++ .+.+...|.... +++++||+|++..
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~-- 189 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV-- 189 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC--
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC--
Confidence 47999999999999999988722346799999999999988765 43 456777777665 6677999999842
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..++.++.++|+|||.+++.++.
T Consensus 190 ----~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 190 ----PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp ----SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 45567999999999999999999874
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=109.49 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
..+|||+|||+|.++..+++. ...++++|+++.+++.|+++ ++ .+.+...+.....+++++||+|++..
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV-- 166 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS--
T ss_pred CCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC--
Confidence 379999999999999999987 35799999999999988764 43 45667777766543667899999742
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++..++.++.++|||||.+++..+.
T Consensus 167 ----~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 167 ----REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp ----SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ----cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 35567999999999999999999885
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-10 Score=111.05 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCC-C-CC----CCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL-P-YP----SLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~L-P-fp----d~sFDlV 351 (697)
..+|||||||+|..+..+++.-.....++++|+++.+++.|+++ ++. +.+.++++... + +. .++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 47999999999999999998632246799999999999888764 443 66777666432 2 11 1789999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... ..+...++.++.++|||||++++.+..
T Consensus 145 ~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 145 YIDAD----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EECSC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 96543 345678999999999999999998765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-10 Score=123.23 Aligned_cols=103 Identities=16% Similarity=0.042 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH-------HHc----C---CCcEEEeecccCC--CC--C
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-------LER----G---LPAMIGSFASKQL--PY--P 344 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A-------~er----g---l~~~~~~~da~~L--Pf--p 344 (697)
...+|||||||+|.++..+++.. ....|+|+|+++.+++.| +++ | .++.+..++.... ++ .
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~ 320 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 320 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence 34899999999999999999862 234699999999998877 443 4 2455555543322 22 2
Q ss_pred CCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 345 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 345 d~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++||+|+++.++ +.++...+|.++.++|||||.+++.++..
T Consensus 321 ~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 321 IPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp GGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 4689999988663 34667788999999999999999986543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=108.10 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfpd~sFDlV~~~~~ 356 (697)
..+|||||||+|..+..+++.......++++|+++.+++.|+++ ++ .+.+..+++.. ++..++ ||+|++...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 47999999999999999988632246799999999999988754 33 35666677654 355456 999998743
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+...+++++.++|||||++++.+..
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 345678999999999999999997643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=119.18 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +...++++|. +.+++.|++. ..+.+..+|... ++++ ||+|++..++++| +
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~-~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNW-T 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGS-C
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccC-C
Confidence 45799999999999999999873 3457999999 9999887653 246777777755 6653 9999999995555 5
Q ss_pred cHH--HHHHHHHHhccC---CeEEEEEeCCC
Q 005432 363 KDG--ILLLEVDRVLKP---GGYFVWTSPLT 388 (697)
Q Consensus 363 d~~--~~L~El~RvLKP---GG~Lvis~p~~ 388 (697)
+.. .+|++++++||| ||++++.++..
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 555 899999999999 99999998653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.6e-10 Score=117.21 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+..+|||||||+|.++..+++.. ....++++|+ +.+++.|+++ ++ .+.+...|... +++. .||+|++..+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 34799999999999999999874 3467899999 8899888754 34 46777777654 4554 4999999998
Q ss_pred cccccccH--HHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKD--GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~--~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++++ ++. ..+|+++.++|||||++++.++.
T Consensus 259 l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 259 LLNW-PDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGGS-CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccCC-CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 5555 444 47999999999999999999876
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=107.99 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-CC---CCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YP---SLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-fp---d~sFDlV~ 352 (697)
+.+|||||||+|..+..+++.......++++|+++.+++.|+++ ++ .+.+..+++... + ++ .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 47999999999999999998732246799999999999888754 44 366777776432 1 11 25799999
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+... ......++.++.++|||||++++.+..
T Consensus 139 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8754 234568999999999999999988764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-10 Score=110.69 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=80.2
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeec
Q 005432 263 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFA 337 (697)
Q Consensus 263 y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~d 337 (697)
....+.+.+...+ ..+|||||||+|.++..+++.+. ..++++|+++.+++.|+++ ++ ++.+...+
T Consensus 79 ~~~~~~~~l~~~~--------~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 148 (235)
T 1jg1_A 79 MVAIMLEIANLKP--------GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 148 (235)
T ss_dssp HHHHHHHHHTCCT--------TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHhcCCCC--------CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 3445555554433 37899999999999999998742 5799999999999988764 33 45566666
Q ss_pred ccCCCCCCC-CccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 338 SKQLPYPSL-SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 338 a~~LPfpd~-sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ..+++++ .||+|++..+ .++.. .++.++|||||.++++.+..
T Consensus 149 ~-~~~~~~~~~fD~Ii~~~~-~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 149 G-SKGFPPKAPYDVIIVTAG-APKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp G-GGCCGGGCCEEEEEECSB-BSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred c-ccCCCCCCCccEEEECCc-HHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 5 4555554 4999999987 44332 37899999999999998753
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-10 Score=117.69 Aligned_cols=103 Identities=14% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LP-fpd~sFDlV~~~~~ 356 (697)
..+|||||||+|.++..++++. +...++++|. +.+++.++++ ++ .+.+..+|....+ +..+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 5899999999999999999873 3467899999 7788877654 33 3667777877665 13457999999998
Q ss_pred ccccccc-HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d-~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++|.+. ...+|++++++|||||++++.++..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 5555432 2689999999999999999988644
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.8e-10 Score=118.88 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=80.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +...++++|. +.+++.|++. ..+.+..+|... |++++ |+|++..++++|.+
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 45899999999999999999874 4567899999 8888877653 467788888776 77754 99999999555653
Q ss_pred c-HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 K-DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d-~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ...+|++++++|||||++++.+...
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYIL 303 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 3 2479999999999999999998654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.5e-10 Score=111.44 Aligned_cols=104 Identities=16% Similarity=0.052 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc-------CC--C----------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER-------GL--P---------------------- 330 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~gvD~S~~ml~~A~er-------gl--~---------------------- 330 (697)
...+|||+|||+|.++..+++.. .....|+++|+++.+++.|+++ ++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 34789999999999999998761 1356799999999999988743 11 1
Q ss_pred ---cE-------------EEeecccCCCC-----CCCCccEEEecccccccc--------ccHHHHHHHHHHhccCCeEE
Q 005432 331 ---AM-------------IGSFASKQLPY-----PSLSFDMLHCARCGVDWD--------QKDGILLLEVDRVLKPGGYF 381 (697)
Q Consensus 331 ---~~-------------~~~~da~~LPf-----pd~sFDlV~~~~~llh~~--------~d~~~~L~El~RvLKPGG~L 381 (697)
+. +.+.|...... ..++||+|+|+....+.. .....++.++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 33 66677655321 345899999986533322 22357999999999999999
Q ss_pred EEEeC
Q 005432 382 VWTSP 386 (697)
Q Consensus 382 vis~p 386 (697)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=116.37 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=74.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------CCcEEEeecccCC--CCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------LPAMIGSFASKQL--PYPS 345 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------------l~~~~~~~da~~L--Pfpd 345 (697)
+.+|||+|||+|.++..+++.......++++|+++.+++.|+++. .++.+..+|+..+ ++++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 185 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence 479999999999999999986223367999999999999887641 2566777887776 5677
Q ss_pred CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++||+|++... ++..++.++.++|||||.|++..+.
T Consensus 186 ~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 186 LTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 88999998643 2334899999999999999998874
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=111.17 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.. ....++++|+|+.+++.|+++ ++ ++.+.++|... ++++++||+|+++...+
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred CCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCC
Confidence 4789999999999999998652 346799999999999988764 44 46677777655 34467899999984311
Q ss_pred c------------cc------------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 D------------WD------------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h------------~~------------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. +. .....++.++.++|||||++++....
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 11 12357899999999999999998653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=117.90 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=81.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +...++++|. +.+++.|++. ..+.+..+|... |++.+ |+|++..++++|.+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD 274 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence 45899999999999999999863 4467899999 8888777653 467788888877 78764 99999999556653
Q ss_pred c-HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 363 K-DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 363 d-~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+ ...+|++++++|||||+++|.+...
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 3 3579999999999999999998654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=115.32 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--cC--CCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--RG--LPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e--rg--l~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|.++..++++. ....++++|.+ .++..++. .+ ..+.+..+|.. .++| +||+|++..+++
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh 258 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILH 258 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGG
T ss_pred CCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhcc
Confidence 35799999999999999999874 45678999994 44441110 12 23667777774 4455 899999999855
Q ss_pred cccccH--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 359 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+| ++. ..+|++++++|||||+|++.+...
T Consensus 259 ~~-~d~~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 259 NW-GDEDSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp GS-CHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred CC-CHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 54 444 589999999999999999988644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=110.96 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecC-CHHHHHHHHHcC---------C------CcEEEeecccCCC--C-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA-SGSQVQLTLERG---------L------PAMIGSFASKQLP--Y- 343 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~-S~~ml~~A~erg---------l------~~~~~~~da~~LP--f- 343 (697)
...+|||||||+|.++..+++.+. ..|+++|+ ++.+++.|+++. + ++.+...+..... +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 347999999999999999988752 47999999 899998886542 1 2334333322211 1
Q ss_pred ---CCCCccEEEeccccccccccHHHHHHHHHHhcc---C--CeEEEEEeC
Q 005432 344 ---PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLK---P--GGYFVWTSP 386 (697)
Q Consensus 344 ---pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLK---P--GG~Lvis~p 386 (697)
++++||+|++..+ +++.++...++.++.++|+ | ||.+++...
T Consensus 157 ~~~~~~~fD~Ii~~dv-l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADL-LSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp HHHSCSSBSEEEEESC-CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred hhccCCCCCEEEEeCc-ccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 3578999999888 5556777899999999999 9 998777543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=107.33 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCCC---CCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLP---YPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~LP---fpd~sFDlV~~~~~ 356 (697)
+..+|||+|||+|.++..+++.......++++|.++.+++.++++ ..++.+..+|+.... ...++||+|++...
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 457999999999999999987621224789999999988777543 235667777776521 12358999998644
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEEEe
Q 005432 357 GVDWDQKD-GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvis~ 385 (697)
.++. ..++.++.++|||||++++..
T Consensus 153 ----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 ----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2333 345999999999999999983
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=115.10 Aligned_cols=103 Identities=17% Similarity=0.027 Sum_probs=82.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+|||+|.++..++..+.....++|+|+++.+++.|+++ ++ .+.+.+.|+..++.+.+.||+|+|+.. +
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP-y 282 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP-H 282 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC-S
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC-C
Confidence 47899999999999999988642335799999999999988754 44 578888999999888788999999754 2
Q ss_pred cc-c-------ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DW-D-------QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~-~-------~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.. . .....++.++.++|||||.+++.++.
T Consensus 283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 21 1 11256899999999999999998874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=112.90 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC--CCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL--PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L--Pfpd~sFDlV 351 (697)
.+.+|||||||+|.++..++++. ...+|+++|+++.+++.|+++. ..+.+..+|+... .+++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45799999999999999999873 3568999999999999998642 2466777776543 2356799999
Q ss_pred Eecccccccc--cc--HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWD--QK--DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~--~d--~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... .++. .. ...+++++.++|||||.|++....
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 98643 2221 11 257999999999999999997543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=108.05 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCCCCCC-CC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPS-LS 347 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~-----~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~LPfpd-~s 347 (697)
..+|||||||+|.++..+++.... ...++++|+++.+++.|+++. .++.+...|... ++++ ++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 479999999999999999875211 137999999999999887641 256677777765 5554 78
Q ss_pred ccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 348 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 348 FDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
||+|++..+ .++. +.++.++|||||++++....
T Consensus 164 fD~I~~~~~-~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGAA-APDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECSC-BSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECCc-hHHH------HHHHHHHhcCCCEEEEEEec
Confidence 999999987 4433 36889999999999998764
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-10 Score=118.23 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------CcEEE--eecccCCCCCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~~~~~--~~da~~LPfpd~sFDlV~~ 353 (697)
+..+|||||||+|.++..++++ ..|+++|+++ |+..++++.. ++.+. ++|+..+| +++||+|+|
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 3579999999999999999987 3589999998 6543433322 45677 78888776 679999999
Q ss_pred cccccccccc----HH---HHHHHHHHhccCCe--EEEEEeCCC
Q 005432 354 ARCGVDWDQK----DG---ILLLEVDRVLKPGG--YFVWTSPLT 388 (697)
Q Consensus 354 ~~~llh~~~d----~~---~~L~El~RvLKPGG--~Lvis~p~~ 388 (697)
..+ . +..+ .. .+|.++.++||||| .|++.++.+
T Consensus 155 d~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 155 DIG-E-SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp CCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred CCC-c-CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 865 2 2211 11 37899999999999 999987753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-10 Score=115.67 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------CcEEE--eecccCCCCCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~~~~~--~~da~~LPfpd~sFDlV~~ 353 (697)
+..+|||||||+|.++..++++ ..|+++|+++ |+..+.++.. ++.+. ++|+..++ +++||+|+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 3479999999999999999887 3589999998 5433322222 45666 77887766 679999999
Q ss_pred ccccccccccH----H---HHHHHHHHhccCCe--EEEEEeCC
Q 005432 354 ARCGVDWDQKD----G---ILLLEVDRVLKPGG--YFVWTSPL 387 (697)
Q Consensus 354 ~~~llh~~~d~----~---~~L~El~RvLKPGG--~Lvis~p~ 387 (697)
..+ . +..+. . .+|.++.++||||| .|++.+..
T Consensus 147 d~~-~-~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-E-SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-C-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-c-cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 765 2 22111 1 37899999999999 99998775
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=107.93 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccC-CC--------------
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-------------- 342 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-LP-------------- 342 (697)
..+|||||||+|.++..+++.......++++|.++.+++.|+++ ++. +.+..+++.. ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 47999999999999999998732246799999999999988765 442 5566666433 12
Q ss_pred CCC--CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 343 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 343 fpd--~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|++ ++||+|++... .++...++.++.++|||||++++.+.
T Consensus 141 f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 333 78999998754 23456899999999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.2e-10 Score=126.46 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=80.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCC--CCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL--PYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~L--Pfpd~sFDlV~~~~ 355 (697)
.+.+|||||||.|.++..|+++| ..|+|+|.++.+++.|+.+ + +++.+.+.+++++ ++++++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 34689999999999999999997 4699999999999988743 4 5678888888887 57788999999999
Q ss_pred ccccccccHH--HHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~--~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ ++|.+++. ..+..+.+.|+++|..++....
T Consensus 143 ~-~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 143 V-FHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp C-HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred c-hhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 9 55566664 3456788888998876665543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-09 Score=108.39 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. ..+.+...|+.. ++..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45899999999999999999872 3467999999999999998642 245667777654 344467999999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+... .++.+. ...+++++.++|||||.+++....
T Consensus 154 ~d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9754 333221 257999999999999999998654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-09 Score=100.39 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++..++.+.++|+..++ ++||+|+++.. +++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP-FGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC-C----
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCC-chhcc
Confidence 45799999999999999998874 34699999999999999887556778888888875 68999999987 44443
Q ss_pred c--HHHHHHHHHHhccCCeEEEEE
Q 005432 363 K--DGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 363 d--~~~~L~El~RvLKPGG~Lvis 384 (697)
+ ...+++++.++| |+.+++.
T Consensus 125 ~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE
T ss_pred CchhHHHHHHHHHhc--CcEEEEE
Confidence 2 246899999998 5544443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-09 Score=111.89 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|+++. ..+.+...|+.. ++..+++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 34799999999999999999862 3568999999999999998752 235566666544 233457899999
Q ss_pred ecccccccccc--H--HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWDQK--D--GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~~d--~--~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+... .++.+. . ..+++++.++|||||++++....+
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 8753 232211 1 579999999999999999986543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-09 Score=109.29 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=79.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-CCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-Pfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. .++.+...|+... +..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 45799999999999999998773 3568999999999999998752 2456666676542 22367899999
Q ss_pred eccccccccccH----HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+... .++.+.. ..+++++.++|||||.+++....+
T Consensus 157 ~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 157 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 9643 3332221 589999999999999999986543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-09 Score=111.69 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. ..+.+..+|+.. ++..+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35799999999999999999873 4568999999999999998753 235566666654 333567899999
Q ss_pred eccccccccccH----HHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p 386 (697)
+... .++.+.. ..+++++.++|+|||.+++...
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 8753 3332221 5789999999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-09 Score=109.29 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. ..+.+...|+.. ++..+++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 34799999999999999999872 3467999999999999987642 245667777544 344567899999
Q ss_pred eccccccccc-----cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~-----d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+... .++.. ....+++++.++|||||.+++....
T Consensus 169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 8643 22111 1257899999999999999998654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=112.83 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=79.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccC-CCCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-LPfpd~sFDlV 351 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. ..+.+..+|+.. ++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35799999999999999999873 3467999999999999987642 245677777655 34456799999
Q ss_pred Eeccccccc---ccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 352 HCARCGVDW---DQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~---~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++... .++ .+. ...+++++.++|||||.+++...
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99865 444 211 25799999999999999999753
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=103.33 Aligned_cols=99 Identities=16% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCce--------eEEEEecCCHHHHHHHHHcCCCcEEE-eecccCCC--------CCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLT--------MCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP--------YPSL 346 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~--------~sV~gvD~S~~ml~~A~ergl~~~~~-~~da~~LP--------fpd~ 346 (697)
..+|||||||+|.++..++++.... ..++++|+++.+ ....+.+. .+|....+ ++++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999873221 579999999832 01234555 56654432 3456
Q ss_pred CccEEEecccc---ccccccH-------HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 347 SFDMLHCARCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 347 sFDlV~~~~~l---lh~~~d~-------~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+||+|+|..+. .++..+. ..++.++.++|||||.|++.+...
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 89999996541 2222222 378999999999999999987643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=120.43 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||||||+|.++..+++.+ ...|+++|+|+ |++.|+++ ++ .+.+..++...++++ ++||+|+|...
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred CCCEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc
Confidence 34799999999999999998864 35799999998 88777653 44 467888888887776 48999999876
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEE
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis 384 (697)
.+++. ++....+.++.++|||||++++.
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45543 33356788999999999999854
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-09 Score=111.50 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCCCC----CCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPY----PSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~LPf----pd~sFDlV~ 352 (697)
..+|||+|||+|.++..+++.+. .|+++|+|+.+++.|+++ ++. +.+.++|+..+.. .+++||+|+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 46899999999999999998763 799999999999988764 443 6777777665431 156899999
Q ss_pred ecccc---------ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCG---------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~l---------lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.... .++..+...++.++.++|||||+|++.....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 95321 1223445689999999999999988876543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-10 Score=113.89 Aligned_cols=100 Identities=7% Similarity=-0.037 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-CCC-----CCCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP-----SLSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-Pfp-----d~sFDlV 351 (697)
+.+|||||||+|..+..+++.......|+++|+++.+++.|+++ ++ .+.+..+++... +.. +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 47999999999999999998632346799999999988666543 44 466777776543 221 4789999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... ..+...++.++.++|||||++++.+..
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 98744 344567999999999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-09 Score=106.53 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc----CCCCCC--CCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK----QLPYPS--LSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~----~LPfpd--~sFDlV 351 (697)
..+|||||||+|..+..+++.......++++|.++.+++.|++. ++ .+.+..+++. .++..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 47999999999999999988632245799999999999988754 44 3556666643 233434 789999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... ..+...++.++.++|||||++++.+..
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 98754 345578999999999999999998654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=111.99 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+|||||||+|.++..++++. ...+++++|+++.+++.|++. ..++.+...|+.. ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45799999999999999999873 356899999999999998864 2345667777654 444567999999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+... .++.+. ...+++++.++|||||.+++....
T Consensus 174 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 8644 333221 136899999999999999998743
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-09 Score=111.91 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=77.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCcEEEeecccCC--CCCCCCccEEEecccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQL--PYPSLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~L--Pfpd~sFDlV~~~~~l 357 (697)
.+|||||||+|.++..++++. ...+++++|+++.+++.|++.. ..+.+...|+... .+++++||+|++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~- 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF- 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-
Confidence 499999999999999999852 3457999999999999998763 2456777776554 355689999998643
Q ss_pred cccc-cc---HHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWD-QK---DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~-~d---~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+.. +. ...++++++++|||||+|++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2221 11 15799999999999999998775
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=104.99 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||+|||+|.++..+++.+ ....|+++|.++.+++.|+++ ++ ++.+..+|+..++. +++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 34799999999999999999874 245799999999999888753 43 46678888887744 6789999988652
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+...++.++.++|||||.++++....
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 45578999999999999999988753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-09 Score=109.19 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-C-----CCCCccE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-Y-----PSLSFDM 350 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-f-----pd~sFDl 350 (697)
..+|||||||+|..+..+++.......++++|+++.+++.|++. ++ .+.+..+++... + + ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 47999999999999999988632246799999999999988754 44 355666666442 3 2 2578999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|++... ..+...++.++.++|||||++++...
T Consensus 160 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 160 IFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEECSC----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEcCc----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 998743 34567899999999999999998764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=109.55 Aligned_cols=106 Identities=18% Similarity=0.112 Sum_probs=80.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC----CCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY----PSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPf----pd~sFDlV~~~ 354 (697)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++ ++.+...|+..++. .+++||+|++.
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d 163 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLD 163 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEc
Confidence 47999999999999999987522235799999999999887654 44 56677778776654 36789999986
Q ss_pred ccc-----cc------------ccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCG-----VD------------WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~l-----lh------------~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
... ++ .......+|.++.++|||||++++++....
T Consensus 164 ~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 164 APCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp ECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 210 11 113446799999999999999999986553
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=114.04 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=79.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
...+|||||||+|.++..++++. +...++++|. +.+++.|++. ..+.+...|... +++ +||+|++..+ +|+.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~v-lh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWV-LHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESC-GGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEccc-ccCCC
Confidence 34799999999999999999874 3457899999 7888776542 246677777766 666 4999999998 55445
Q ss_pred cHH--HHHHHHHHhccC---CeEEEEEeCCC
Q 005432 363 KDG--ILLLEVDRVLKP---GGYFVWTSPLT 388 (697)
Q Consensus 363 d~~--~~L~El~RvLKP---GG~Lvis~p~~ 388 (697)
+.. .+|+++.++||| ||++++.++..
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 555 899999999999 99999988643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=113.64 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCccEEEec--
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCA-- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd~sFDlV~~~-- 354 (697)
+.+|||+|||+|..+..+++.......++++|+++.+++.++++ |+ ++.+.+.|+..++ +++++||+|++.
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 47999999999999999988632235799999999999887654 55 5677778887776 666789999962
Q ss_pred ---cccccccccH----------------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 355 ---RCGVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 ---~~llh~~~d~----------------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
...++..++. ..+|.++.++|||||++++++.....
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 1223322222 46899999999999999999876543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-09 Score=104.51 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-CC--C--CCccEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YP--S--LSFDML 351 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-fp--d--~sFDlV 351 (697)
..+|||||||+|.++..+++.......++++|.++.+++.|+++ ++ .+.+..+++... + ++ . ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 47999999999999999998632246799999999999988764 43 456666665432 1 21 1 689999
Q ss_pred EeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++... ..+...++.++.++|||||++++.+..
T Consensus 150 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 150 VVDAD----KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 98754 334568999999999999999997653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=107.56 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCcEEEeecccC-CCCCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ-LPYPSL 346 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~-LPfpd~ 346 (697)
.+.+|||||||+|.++..++++ ...+++++|+++.+++.|++.. ..+.+...|+.. ++. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 3479999999999999999987 3568999999999999998652 234566666543 222 57
Q ss_pred CccEEEecccccccccc----HHHHHHHHHHhccCCeEEEEEeC
Q 005432 347 SFDMLHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 347 sFDlV~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+||+|++... .++.+. ...+++++.++|+|||.+++...
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 8999998754 333221 25689999999999999999754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=113.07 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CcEEEeecccCCCCCCCCccEEEeccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFASKQLPYPSLSFDMLHCARC- 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~da~~LPfpd~sFDlV~~~~~- 356 (697)
+.+|||||||+|.++..+++.|. ..|+++|.|+ |++.|++ .++ .+.+...+++.+.++ +.||+|+|...
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 47899999999999998888863 4689999985 6666653 344 466778888888887 58999998532
Q ss_pred -cccccccHHHHHHHHHHhccCCeEEEE
Q 005432 357 -GVDWDQKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 357 -llh~~~d~~~~L~El~RvLKPGG~Lvi 383 (697)
.+.+......++....|.|||||.++.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 133334567889999999999999873
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.84 E-value=9.2e-10 Score=111.52 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCC---CCC---CCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL---PYP---SLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~L---Pfp---d~sFDl 350 (697)
...+|||+|||+|.++..++++. ....++++|+++.|++.|+++ ++. +.+..+|+... +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 35799999999999999888762 235799999999999988754 443 67777776552 454 368999
Q ss_pred EEecccccccc--------------ccHHHHHHHHHHhccCCeEEEEEe
Q 005432 351 LHCARCGVDWD--------------QKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 351 V~~~~~llh~~--------------~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
|+|+...++.. .....++.++.|+|||||.+.+..
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 99985522211 011245678899999999877653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.8e-09 Score=106.19 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCCCCCCCCccEEEe
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~LPfpd~sFDlV~~ 353 (697)
.+.+|||||||+|.++..++++ . .+++++|+++.+++.|++.. ..+.+...|+.... ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 4579999999999999999887 3 68999999999999887642 23566667776654 78999998
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.. .++..+++++.++|||||.+++....
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 73 23456999999999999999997543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=106.55 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=74.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCc---cEEEecc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSF---DMLHCAR 355 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sF---DlV~~~~ 355 (697)
.+|||+|||+|.++..+++. ....++++|+|+.+++.|+++ ++. +.+.+.|... +++ ++| |+|+++.
T Consensus 125 ~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP 200 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred CEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence 68999999999999999987 456799999999999988754 443 6777777655 233 479 9999973
Q ss_pred cccc----------cc--------ccHHHHHHHHH-HhccCCeEEEEEeC
Q 005432 356 CGVD----------WD--------QKDGILLLEVD-RVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh----------~~--------~d~~~~L~El~-RvLKPGG~Lvis~p 386 (697)
-.+. +. .+...+++++. +.|+|||++++...
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 2110 11 11126899999 99999999999654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=113.83 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecC----CHHHHHHHHHc--C-CCcEEEee-cccCCCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA----SGSQVQLTLER--G-LPAMIGSF-ASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~----S~~ml~~A~er--g-l~~~~~~~-da~~LPfpd~sFDlV~~~ 354 (697)
++.+|||||||+|.++..++++ ..|+++|+ ++.+++.+..+ + ..+.+.+. |+..+| .++||+|+|.
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 3479999999999999999987 24788998 45443222111 1 13455555 665554 5689999997
Q ss_pred cccc--cccccHH---HHHHHHHHhccCCeEEEEEeCCC
Q 005432 355 RCGV--DWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 355 ~~ll--h~~~d~~---~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+.. ++..+.. .+|.++.++|||||.|++..+.+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 6521 2222222 47899999999999999977654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-08 Score=105.95 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=78.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCC-CCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPY-PSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPf-pd~sFDlV~~~~ 355 (697)
.+.+|||+| |+|.++..++..+. ...++++|+++.|++.|+++ ++ ++.+..+|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 357999999 99999999988752 35799999999999988765 55 67788888887 764 457899999986
Q ss_pred ccccccccHHHHHHHHHHhccCCeE-EEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGY-FVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~-Lvis~p 386 (697)
. ++... ...++.++.++|||||. ++++..
T Consensus 250 p-~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 P-ETLEA-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp C-SSHHH-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred C-CchHH-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 5 33222 46899999999999994 455554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=100.30 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC-----------CCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-----------SLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfp-----------d~sFDlV 351 (697)
++.+|||+|||+|.++..++++ ...|+++|+++.. ....+.+.++|+...+.. .++||+|
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V 95 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV 95 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred CCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence 3489999999999999999987 4579999998741 123567777887765521 1489999
Q ss_pred Eeccccccc----ccc-------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 352 HCARCGVDW----DQK-------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 352 ~~~~~llh~----~~d-------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+|... ... ..+ ...++.++.++|||||.|++....
T Consensus 96 lsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 96 VSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp EECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 99643 111 111 246789999999999999987764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=101.22 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=89.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++.+ ....|+++|+++.+++.|++. ++ .+.+..+|......+++.||+|+..+..
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 4789999999999999999885 456799999999999988754 44 3667777877666555579998865541
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
- +-...+|.+..+.|+++|+|+++.... ...++.+....+|....+
T Consensus 101 g---~lI~~IL~~~~~~l~~~~~lIlqp~~~--------------~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 101 G---RLIADILNNDIDKLQHVKTLVLQPNNR--------------EDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp H---HHHHHHHHHTGGGGTTCCEEEEEESSC--------------HHHHHHHHHHTTEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCcCCEEEEECCCC--------------hHHHHHHHHHCCCEEEEE
Confidence 1 123568899999999999999987421 234566677778887654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=92.41 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++++.+..+|+..++ ++||+|+++.. +
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p-~ 122 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-F 122 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCC-C
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCC-C
Confidence 457999999999999999998853 3699999999999998865 346778888888764 48999999876 4
Q ss_pred cccc--cHHHHHHHHHHhccCCeEEEEE
Q 005432 359 DWDQ--KDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 359 h~~~--d~~~~L~El~RvLKPGG~Lvis 384 (697)
+... ....++.++.++| ||.+++.
T Consensus 123 ~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 123 GSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 4332 2357899999998 6655544
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=111.27 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCccEEEec---
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCA--- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP--fpd~sFDlV~~~--- 354 (697)
+.+|||+|||+|..+..+++... ...++++|+++.+++.++++ ++++.+.+.|+..++ +++++||+|++.
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 47999999999999999998743 26799999999998877654 667778888887776 666799999962
Q ss_pred -cc-cccccccH----------------HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 -RC-GVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 -~~-llh~~~d~----------------~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. .++..++. ..+|.++.++|||||++++++....
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 21 12222221 3689999999999999999986554
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=103.14 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-C-----CCCCccE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-Y-----PSLSFDM 350 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-f-----pd~sFDl 350 (697)
..+|||||||+|..+..+++.-.....++++|+++.+++.|++. ++ .+.+..+++... + + ++++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 47999999999999999988632246799999999999988753 44 355666665432 2 2 2578999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|++... ..+...++.++.++|||||++++...
T Consensus 151 I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 151 GFVDAD----KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEECCc----hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 997643 34456899999999999999998764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-08 Score=101.82 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++.+ ....++++|+++.+++.|+++ ++. +.+..+|......+++.||+|+..+..
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 4789999999999999999885 456799999999999988765 553 567777766655554469999876541
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
- .-...+|.+..+.|+++|+|+++... ....++.+....+|....+
T Consensus 101 g---~lI~~IL~~~~~~L~~~~~lIlq~~~--------------~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 101 G---TLIRTILEEGAAKLAGVTKLILQPNI--------------AAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp H---HHHHHHHHHTGGGGTTCCEEEEEESS--------------CHHHHHHHHHHHTEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCCCCEEEEEcCC--------------ChHHHHHHHHHCCCEEEEE
Confidence 1 12356899999999999999998642 1234566677778876543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=113.10 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC-CCCCCccEEEe----c
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHC----A 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LP-fpd~sFDlV~~----~ 354 (697)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+.+.+.+.|+..++ +.+++||+|++ +
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 48999999999999999997633335799999999999887654 666677777877765 34679999995 2
Q ss_pred cc-ccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 355 RC-GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 ~~-llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.. .+...++ ...+|.++.++|||||+|++++-....
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~ 234 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP 234 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence 11 1111111 156899999999999999999865543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=105.10 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CcEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l--~~~~~ 334 (697)
....+.+.+.+...+ ..+|||||||+|.++..|++.+ ..++++|+++.|++.++++. . ++.+.
T Consensus 14 ~~i~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 82 (285)
T 1zq9_A 14 PLIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVL 82 (285)
T ss_dssp HHHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred HHHHHHHHHhcCCCC--------CCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 344555665554433 3799999999999999999885 36999999999999988752 2 46778
Q ss_pred eecccCCCCCCCCccEEEeccccccccccHH-HHH--------------HHH--HHhccCCeEE
Q 005432 335 SFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILL--------------LEV--DRVLKPGGYF 381 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~llh~~~d~~-~~L--------------~El--~RvLKPGG~L 381 (697)
.+|+..++++ +||+|+++.. +++..+.- .+| +|+ +++|+|||.+
T Consensus 83 ~~D~~~~~~~--~fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 83 VGDVLKTDLP--FFDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp ESCTTTSCCC--CCSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred Ecceecccch--hhcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 8888887776 7999999765 56543221 222 233 3699999986
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-08 Score=104.55 Aligned_cols=102 Identities=21% Similarity=0.185 Sum_probs=80.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...+|||||||+|.++..++++. +...++..|. +.+++.|+++. -.+.+..+|....|.+ .+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 45799999999999999999884 5567788887 77888887652 2466777777665555 47999999996
Q ss_pred ccccccH-HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
++|.++. ..+|++++++|+|||.++|.+...
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 6665432 478999999999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.8e-08 Score=105.73 Aligned_cols=101 Identities=17% Similarity=0.005 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
...+|||+|||+|.++..++..+. ...++|+|+++.|++.|+++ ++ .+.+.++|+..+++++++||+|+|+..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 347899999999999999998753 23699999999999988754 55 578889999999988889999999754
Q ss_pred ccccc------cc-HHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWD------QK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~------~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..... .+ ...++.++.++| ||.+++...
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 21111 11 146888999999 555555544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=110.69 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC-CCCCccEEEec---
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCA--- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPf-pd~sFDlV~~~--- 354 (697)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+ ++.+.+.|+..++. .+++||+|++.
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 47999999999999999998632345799999999999887654 55 46677778777653 45789999972
Q ss_pred -cc-ccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 -RC-GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 -~~-llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. .+...++ ...+|.++.++|||||+|++++....
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 11 1111111 13689999999999999999986543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-08 Score=98.05 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=85.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeeccc-CCCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASK-QLPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~-~LPfpd~sFDlV~~~~~ 356 (697)
+.+|||||||+|.++..+++.+ +...|+++|+++.+++.|++. ++. +.+...|.. .++. ...||+|+..+.
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~ 93 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM 93 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC
Confidence 4789999999999999999875 456799999999999888754 553 566666652 3332 126999987654
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEeee
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~~ 420 (697)
.- .-...+|.+....|+|+|+|+++... . ...++.+....+|....+
T Consensus 94 Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~-~-------------~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 94 GG---RLIARILEEGLGKLANVERLILQPNN-R-------------EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp CH---HHHHHHHHHTGGGCTTCCEEEEEESS-C-------------HHHHHHHHHHTTEEEEEE
T ss_pred Ch---HHHHHHHHHHHHHhCCCCEEEEECCC-C-------------HHHHHHHHHHCCCEEEEE
Confidence 11 11357899999999999999997552 1 234556667778877654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.8e-08 Score=106.80 Aligned_cols=103 Identities=15% Similarity=0.016 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCC-CCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~L-Pfpd~sFDlV~~~~~ll 358 (697)
+.+|||+|||+|.++..+++.|. .|+++|+|+.+++.|+++ ++...+.++|+..+ +...+.||+|++....+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 57999999999999999998753 399999999999888754 56656667776553 22233499999874422
Q ss_pred cc--------cccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 359 DW--------DQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 359 h~--------~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. ..+...++.++.++|||||+|++++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 21 12234788999999999999997776443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=106.53 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccC-CCC---CCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LPY---PSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~-LPf---pd~sFDlV~ 352 (697)
..+|||+|||+|.++..+++.+ ...|+++|+|+.+++.|++. ++ ++.+.++|+.. ++. ..++||+|+
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4799999999999999999875 34799999999999888754 44 46777777655 221 245899999
Q ss_pred eccccc----ccc----ccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 353 CARCGV----DWD----QKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~ll----h~~----~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+..... ... .+...++.++.++|+|||+++++.....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 864322 122 2234577888999999999999986543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-08 Score=104.76 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=79.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCCCC----CCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY----PSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~LPf----pd~sFDlV~ 352 (697)
..+|||+|||+|.++..+++.+ ...|+++|+++.+++.|++. ++ ++.+..+|+..+.. .+++||+|+
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 4799999999999999999875 34799999999999888754 55 46777777655421 146899999
Q ss_pred ecccc--------ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCG--------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~l--------lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+..-. .........++.++.++|+|||+++++....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 97431 1122345678999999999999999988654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-08 Score=103.06 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc----eeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELL----TMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~----~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
...+|||+|||+|.++..+++.... ...++|+|+++.+++.|+.. ++.+.+..+|+.. +.+.+.||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEEC
Confidence 3479999999999999988876311 26799999999999988753 6677777777655 3345789999999
Q ss_pred cccccccccH------------------HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 355 RCGVDWDQKD------------------GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 355 ~~llh~~~d~------------------~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.. +++.+.. ..++.++.+.|||||++++..|..
T Consensus 209 PP-fg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 209 LP-VGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CC-CSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CC-CCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 66 3222111 157999999999999999998743
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=105.46 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCccEEEeccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARC- 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LP-fpd~sFDlV~~~~~- 356 (697)
+.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+. +.+...|+..++ +.+++||+|++..-
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 48999999999999999987622235799999999999877653 553 556667776664 34579999997421
Q ss_pred ----ccccccc----------------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 357 ----GVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 357 ----llh~~~d----------------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
.+...++ ...+|.++.++|||||+|++++-....
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 239 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP 239 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence 1111111 126799999999999999999875543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-08 Score=114.00 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccC-CCCCCCCccEEEecc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
+.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++ ++. +.+.++|+.. ++..+++||+|++..
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 47899999999999999998753 4699999999999988764 443 6777777765 444567999999964
Q ss_pred cc----------ccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CG----------VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~l----------lh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-. .+...+...++.++.++|+|||+|+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 32 122234457899999999999999998865
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=99.88 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=62.1
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
...+.+.+.+.... ..+|||||||+|.++..|++.+ ..++++|+++.+++.++++ +. ++.+..+
T Consensus 29 ~i~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~ 97 (299)
T 2h1r_A 29 GILDKIIYAAKIKS--------SDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEG 97 (299)
T ss_dssp HHHHHHHHHHCCCT--------TCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC---
T ss_pred HHHHHHHHhcCCCC--------cCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEC
Confidence 34455555554433 3799999999999999999874 4699999999999988764 33 4667777
Q ss_pred cccCCCCCCCCccEEEecccccccc
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
|+..++++ +||+|+++.. +++.
T Consensus 98 D~~~~~~~--~~D~Vv~n~p-y~~~ 119 (299)
T 2h1r_A 98 DAIKTVFP--KFDVCTANIP-YKIS 119 (299)
T ss_dssp -CCSSCCC--CCSEEEEECC-GGGH
T ss_pred chhhCCcc--cCCEEEEcCC-cccc
Confidence 88777764 7999999865 5554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-08 Score=105.90 Aligned_cols=105 Identities=14% Similarity=0.008 Sum_probs=79.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCC----CCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY----PSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPf----pd~sFDlV~ 352 (697)
...+|||+|||+|.++..+++.+ ...|+++|+++.+++.|++. ++ ++.+..+|+..+.. ++++||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 34799999999999999999874 34799999999999888754 44 46777777655421 257899999
Q ss_pred ecccccc--------ccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 353 CARCGVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~llh--------~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+..-.+. ...+...++.++.++|+|||+++++.....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9643211 113345789999999999999999887543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-08 Score=105.06 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCC----CCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPY----PSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPf----pd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..+++. ...|+++|+++.+++.|++. ++. +.+.++|+..... .+++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 378999999999999999986 46799999999999888754 443 6677777655421 25789999986
Q ss_pred ccccc--------ccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 RCGVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ~~llh--------~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.-.+. .......++.++.++|+|||+++++.....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 43211 112345689999999999999999986543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=98.16 Aligned_cols=94 Identities=12% Similarity=-0.058 Sum_probs=66.8
Q ss_pred CCCEEEEeCC------CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEE-EeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGC------GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGC------GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~LPfpd~sFDlV~~~~ 355 (697)
+..+|||+|| |+|. ..+++.......|+++|+++. + ..+.+ .++|+..++++ ++||+|+|+.
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn~ 131 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISDM 131 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEcC
Confidence 4579999999 5576 334433212357999999987 2 24667 88898888775 6899999974
Q ss_pred cccccc-----------ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 356 CGVDWD-----------QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 356 ~llh~~-----------~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. .++. .....+++++.|+|||||.|++..+..
T Consensus 132 ~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 132 Y-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp C-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred C-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 3 2210 112478999999999999999987643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=103.43 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccc---
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW--- 360 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~--- 360 (697)
..+|||+|||+|.++..++++......++|+|+++.+++.| ..+.+.+.|....+. +++||+|+++--....
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCT
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccc
Confidence 36999999999999999987521235799999999998777 356677777766643 4689999997331111
Q ss_pred ------c-ccH------------------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 361 ------D-QKD------------------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 361 ------~-~d~------------------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. ++. ..++..+.++|+|||++++..|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 0 111 15688999999999999999874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=96.02 Aligned_cols=122 Identities=7% Similarity=0.114 Sum_probs=85.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||+|||+|.++..+++++ ...|+++|+++.+++.+++. ++. +.+..+|+..++. .+.||.|++...
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 34899999999999999999886 34699999999999887653 443 5567778777654 468999997743
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEe
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll 418 (697)
+....+|..+.++|||||++.+........ ......+.++.+++..+++..
T Consensus 202 -----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEE
T ss_pred -----CcHHHHHHHHHHHcCCCCEEEEEeeecccc------cchhHHHHHHHHHHHcCCcEE
Confidence 223468888999999999998765432110 011223445556666666543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=97.56 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|||||||+|.++..+. ....++++|+++.+++++++. +.+..+...|....+.+. +||+|++.-+ +
T Consensus 105 ~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~-l 178 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKL-L 178 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESC-H
T ss_pred CCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHH-H
Confidence 45899999999999999887 346799999999999988754 667778888887777765 9999999877 5
Q ss_pred cccccH-HHHHHHHHHhccCCeEEEEE
Q 005432 359 DWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 359 h~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
|+.++. ...+.++...|+++|.++-.
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence 555333 23444888899999766543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-09 Score=106.23 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 338 (697)
...+.+.+.+.... ..+|||||||+|.++..+++++ ..++++|+++.+++.|+++. .++.+..+|+
T Consensus 16 ~~~~~i~~~~~~~~--------~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~ 84 (245)
T 1yub_A 16 KVLNQIIKQLNLKE--------TDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI 84 (245)
T ss_dssp TTHHHHHHHCCCCS--------SEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC
T ss_pred HHHHHHHHhcCCCC--------CCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECCh
Confidence 34455666655433 3789999999999999999885 56999999999998876642 2466778898
Q ss_pred cCCCCCC-CCccEEEecccccccc-----------ccHHHHH----HHHHHhccCCeEEEEE
Q 005432 339 KQLPYPS-LSFDMLHCARCGVDWD-----------QKDGILL----LEVDRVLKPGGYFVWT 384 (697)
Q Consensus 339 ~~LPfpd-~sFDlV~~~~~llh~~-----------~d~~~~L----~El~RvLKPGG~Lvis 384 (697)
..+++++ ++| .|+++.. ++.. .....++ +.+.|+|+|||.+.+.
T Consensus 85 ~~~~~~~~~~f-~vv~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 85 LQFQFPNKQRY-KIVGNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp TTTTCCCSSEE-EEEEECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred hhcCcccCCCc-EEEEeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 8888874 689 6777633 2221 1111233 5578888888876664
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=95.11 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCC-CCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPS-LSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd-~sFDlV~~~~~ll 358 (697)
...+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+..+|+..+++++ ..| .|+++.. +
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~nlP-y 104 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGNIP-Y 104 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEECC-G
T ss_pred CCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEeCC-c
Confidence 34799999999999999999885 56999999999999998763 35778889999998874 455 4556543 4
Q ss_pred c
Q 005432 359 D 359 (697)
Q Consensus 359 h 359 (697)
+
T Consensus 105 ~ 105 (244)
T 1qam_A 105 N 105 (244)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.5e-07 Score=98.28 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
...+|||+|||+|.++..|++.+ ..|+++|.++.+++.|+++ ++.+.+..+|+..+... +||+|++.....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRA 364 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTT
T ss_pred CCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCcc
Confidence 34799999999999999999874 4699999999999888754 55577888888776432 899999864411
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.....++..+. .|+|||.++++..
T Consensus 365 ---g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 ---GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ---CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred ---chHHHHHHHHH-hcCCCcEEEEECC
Confidence 11234555554 5999999999864
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=98.35 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||+|||+|.++.. ++. ...++++|.++.+++.|++. ++ ++.+..+|+..+. ++||+|++...
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP- 267 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP- 267 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT-
T ss_pred CCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc-
Confidence 47999999999999999 773 45799999999999888754 44 4677888887765 78999998633
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
. ....++.++.++|+|||.+++.+...
T Consensus 268 ~----~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 K----FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp T----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred H----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 1 12368999999999999999987644
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=94.32 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|||||||+|.++..++... ....++++|+++.|++++++. |++..+.+.|...-+ +.+.||+|++.-+ +
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt-i 208 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT-L 208 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC-H
T ss_pred CCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH-H
Confidence 35799999999999999988763 567899999999999888754 677777777755444 5578999999987 6
Q ss_pred cccccH-HHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKD-GILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~-~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.++. ...+-++...|+|+|.++-...
T Consensus 209 ~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 209 PCLETQQRGSGWEVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp HHHHHHSTTHHHHHHHHSSCSEEEEEEEC
T ss_pred HHhhhhhhHHHHHHHHHhCCCCEEEeccc
Confidence 655444 2233399999999998875443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.8e-07 Score=94.68 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeec
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 337 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 337 (697)
....+.+.+.+...++ .+|||||||+|.++..|++.+ ..|+++|+++.+++.++++. .++.+..+|
T Consensus 36 ~~i~~~Iv~~l~~~~~--------~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD 104 (295)
T 3gru_A 36 KNFVNKAVESANLTKD--------DVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGD 104 (295)
T ss_dssp HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECc
Confidence 3455566666654443 799999999999999999874 56999999999999887652 467888899
Q ss_pred ccCCCCCCCCccEEEeccccccc
Q 005432 338 SKQLPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 338 a~~LPfpd~sFDlV~~~~~llh~ 360 (697)
+..+++++.+||+|+++.. +++
T Consensus 105 ~l~~~~~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 105 ALKVDLNKLDFNKVVANLP-YQI 126 (295)
T ss_dssp TTTSCGGGSCCSEEEEECC-GGG
T ss_pred hhhCCcccCCccEEEEeCc-ccc
Confidence 9999998889999998855 544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=97.15 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
..+|||+|||+|.++..|++. ...|+++|+|+.+++.|+++ ++ ++.+..+|+.. +++++++||+|++.
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 478999999999999999987 35799999999999988753 44 57788888766 45667899999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-- ..-. ..++..+. .++|++.++++..
T Consensus 364 PP-r~g~---~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 364 PA-RAGA---AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CC-TTCC---HHHHHHHH-HHCCSEEEEEESC
T ss_pred CC-CccH---HHHHHHHH-hcCCCeEEEEECC
Confidence 43 1111 24555554 3789999888754
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.2e-07 Score=100.52 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=82.6
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC------------CceeEEEEecCCHHHHHHHHH---
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE------------LLTMCIANYEASGSQVQLTLE--- 326 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g------------~~~~sV~gvD~S~~ml~~A~e--- 326 (697)
...+.+.+++... ...+|||.|||+|.++..+++.- .....++|+|+++.+++.|+.
T Consensus 158 ~v~~~mv~~l~~~--------~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINPQ--------MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCCC--------TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--------CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 3444555555432 34789999999999998887641 023469999999999998875
Q ss_pred -cCC---CcEEEeecccCCCCCCCCccEEEeccccccc--ccc--------------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 327 -RGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDW--DQK--------------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 327 -rgl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh~--~~d--------------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+++ ...+.++|+...+... +||+|+++...... ... ...++..+.++|||||++++..|
T Consensus 230 l~g~~~~~~~i~~gD~l~~~~~~-~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKEPST-LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSCCSS-CEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCCcCCCCEeeCCCCCCcccC-CcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 355 4567777876666543 89999998552221 110 13689999999999999999887
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.5e-07 Score=90.23 Aligned_cols=133 Identities=14% Similarity=0.038 Sum_probs=91.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccC-ccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEG-LLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~-~~~~~ 622 (697)
..|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ ++--+..|..+ ++. +.+||+|.|.. ++...
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG-----TVEGLELSADMLAIARRRNPDAVLHHGDMRD-FSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-CCC-SCCEEEEEECTTGGGGS
T ss_pred CcEEEeCCcCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChHH-CCc-cCCcCEEEEcCchhhhc
Confidence 5799999999999999987422 45555554 555555554 22222233332 443 78999999987 77765
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcC-------------------------------------------------
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------------------------------------- 653 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------------------------------------------- 653 (697)
. +.-....+|-++-|+|+|||++++.+-
T Consensus 125 ~---~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (263)
T 3pfg_A 125 A---GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDR 201 (263)
T ss_dssp C---HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTT
T ss_pred C---CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCC
Confidence 3 333455789999999999999999520
Q ss_pred ------------HHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEcc
Q 005432 654 ------------ARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 654 ------------~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K~ 690 (697)
....++++++++.--+++...... .....++|++|+
T Consensus 202 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~-~~~~~~~va~K~ 249 (263)
T 3pfg_A 202 GITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG-PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred cEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC-CCCceeEEEecC
Confidence 002688899999989987665322 235678999997
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.7e-07 Score=86.19 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=89.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccC---CCCC-CccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAF---PTYP-RTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f---~typ-rtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+. .. +|+-+|-. ..+..+-+++-+.....-.+.+ +..+ .+||+|.|..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADR--GI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTT--TC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CEEEEeCCCCCHHHHHHHHC--CC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-
Confidence 68999999999999999873 22 44555544 6666777775433332111222 3233 4599999988887
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcCH--------------------------------HHHHHHHHHHhhcCc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------------------------RLIESARALTTRLKW 669 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------------------------------~~~~~~~~~~~~~~W 669 (697)
. .....+|-|+-|+|+|||++++.+.. ...++++++++.-.+
T Consensus 128 -~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 128 -H-----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp -S-----SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred -h-----hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 2 34568999999999999999996431 146888889999999
Q ss_pred eeEEeeeccC-----CCccEEEEEcc
Q 005432 670 DARVIEIESN-----SDERLLICQKP 690 (697)
Q Consensus 670 ~~~~~~~e~~-----~~~~~li~~K~ 690 (697)
++........ +..-++|++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 202 RLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred eEEEEecCCCCCCCCceeEEEEeecC
Confidence 8876543221 12456777774
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.8e-07 Score=86.30 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=75.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+..+
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~ 106 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY-----DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVV 106 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESC
T ss_pred CeEEEEcCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcch
Confidence 4899999999999999987422 44444443 33333322 233 11 2233332 343 789999999988
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC--------------HHHHHHHHHHHhhcCceeEEee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
+.... .-....+|-++-|+|+|||++++-+. .-..++++++.+. |++...+
T Consensus 107 l~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLE----AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCC----HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 87653 22456799999999999999877421 0134567777776 8877654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=88.55 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeec
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 337 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 337 (697)
....+.+.+.+....+ .+|||||||+|.++..|++++ ..++++|+++.|++.++++. .++.+..+|
T Consensus 15 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D 83 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKT--------DTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQND 83 (255)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESC
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 3445566666654444 799999999999999999885 57999999999999998762 467788899
Q ss_pred ccCCCCCC----CCccEEEeccc
Q 005432 338 SKQLPYPS----LSFDMLHCARC 356 (697)
Q Consensus 338 a~~LPfpd----~sFDlV~~~~~ 356 (697)
+..+++++ +.|| |+++.-
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVGNLP 105 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEEECC
T ss_pred hHhCCHHHhccCCCeE-EEecCC
Confidence 98888753 5688 666643
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.7e-06 Score=90.35 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 326 (697)
...|||.+||+|.++..++..+.. ...|+++|+++.|++.|++
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 478999999999998877754321 1459999999999998875
Q ss_pred c----CC--CcEEEeecccCCCCCCCCccEEEecccccccc---ccHHHHHHHHHHhccC--CeEEEEEeCCC
Q 005432 327 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 388 (697)
Q Consensus 327 r----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~---~d~~~~L~El~RvLKP--GG~Lvis~p~~ 388 (697)
+ |+ .+.+.+.|+..++.++ +||+|+++--..... .+...+..++.++||+ ||.+++.+...
T Consensus 282 Na~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQLQVADFQTED-EYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHTTCTTCSEEEECCGGGCCCCC-CSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHcCCCCceEEEECChHhCCCCC-CCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 4 55 3678889999888764 899999994421111 2234566777777776 88888877644
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.6e-06 Score=90.80 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 326 (697)
..+|||.+||+|.++..++..+.. ...|+|+|+++.+++.|++
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 478999999999999888765311 1469999999999998875
Q ss_pred c----CC--CcEEEeecccCCCCCCCCccEEEecccccccc---ccHHHHHHHHHHhccC--CeEEEEEeCCC
Q 005432 327 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 388 (697)
Q Consensus 327 r----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~---~d~~~~L~El~RvLKP--GG~Lvis~p~~ 388 (697)
+ ++ .+.+.+.|+..++.+ ++||+|+|+--..... .+...+.+++.++||+ ||.+++.+...
T Consensus 276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 4 55 467888898888775 4899999986522222 2234577778888887 88888877644
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-06 Score=88.78 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH---cCCCcEEEeecccCCCCCCCCccEEEecccccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD- 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e---rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh- 359 (697)
..+|||+|||+|.++..++++. ....+.++|++..+...... .+.++.....+++...++++.||+|+|..+ .+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a-pns 152 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG-ESS 152 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CCC
T ss_pred CCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc-cCc
Confidence 3689999999999999887762 24567788877433100100 122334444444556677889999999864 33
Q ss_pred ---ccccHH--HHHHHHHHhccCC-eEEEEEeCCC
Q 005432 360 ---WDQKDG--ILLLEVDRVLKPG-GYFVWTSPLT 388 (697)
Q Consensus 360 ---~~~d~~--~~L~El~RvLKPG-G~Lvis~p~~ 388 (697)
+.+... .+|..+.++|+|| |.|++..+.+
T Consensus 153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 333322 3578889999999 9999988754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.8e-06 Score=86.97 Aligned_cols=105 Identities=8% Similarity=-0.060 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCC---CCccEEEec-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPS---LSFDMLHCA- 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd---~sFDlV~~~- 354 (697)
+.+|||+|||+|..+..+++.-.....|+++|+++.+++.++++ ++ ++.+...|+..++... ++||.|++.
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~ 182 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP 182 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence 37999999999999999987521235799999999999887654 54 4667778877776432 579999972
Q ss_pred ---cc-ccccc-----------ccH-------HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 355 ---RC-GVDWD-----------QKD-------GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 355 ---~~-llh~~-----------~d~-------~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.. .+... .+. ..+|..+.++|+ ||+++.++-...
T Consensus 183 PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 183 SCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp CCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred CcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 11 11111 111 236777888887 999999876543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=84.40 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=88.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC--cccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG--lig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++. +--+..|.. .++.-+.+||+|.+..++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH-----QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC-----CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTCC
T ss_pred CeEEEecCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcCC
Confidence 4699999999999999987433 34444443 5555555552 211222332 2332248999999998887653
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeeeccCCCccEEEE
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIESNSDERLLIC 687 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~ 687 (697)
.-....+|-|+-|+|+|||++++.+.. ...++++++++...|++.............++-
T Consensus 117 ----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~ 192 (203)
T 3h2b_A 117 ----PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTA 192 (203)
T ss_dssp ----TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhh
Confidence 235668999999999999999996421 236788899999999988776655533444433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=87.75 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc-------------------------------------eeEEEEecCCHHHHHHHHH
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELL-------------------------------------TMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~~sV~gvD~S~~ml~~A~e 326 (697)
...|||.+||+|.++..++..+.. ...++|+|+++.|++.|++
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 478999999999998877754221 1459999999999998875
Q ss_pred c----CC--CcEEEeecccCCCCCCCCccEEEecccccccc---ccHHHHHHHHHHhccC--CeEEEEEeCCC
Q 005432 327 R----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSPLT 388 (697)
Q Consensus 327 r----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~---~d~~~~L~El~RvLKP--GG~Lvis~p~~ 388 (697)
. |+ .+.+.+.|+..++.++ +||+|+++--.-.-. .+...+..++.+.||+ ||.+++.++..
T Consensus 275 Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 4 55 3678888999888764 899999984411112 2234677777788877 99988887744
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=90.68 Aligned_cols=137 Identities=17% Similarity=0.127 Sum_probs=89.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|.....+- .+|+-+|-. ..+..+-+ .|+-. +..|..+ ++ ++.+||+|.+..
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEECC
Confidence 469999999999999984211221 134444433 44443333 33321 2233333 33 358999999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---------------------------------------HHHH
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------------------------------RLIE 658 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------------------------------~~~~ 658 (697)
++.+.. +.-....+|-|+-|+|||||++++.+-. ...+
T Consensus 196 ~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEP---DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCC---CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcC---CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 887664 3333335799999999999999997611 1367
Q ss_pred HHHHHHhhcCceeEEeeeccCCCccEEEEEcc
Q 005432 659 SARALTTRLKWDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 659 ~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K~ 690 (697)
+++++++.-.++...........-.+++++||
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 88888888889877665444445678899986
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-06 Score=88.40 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
..|||+|||.|+++.+|.+. .+. +|+-+|-. ..+..+-++ |+..-+.-.+..+..+|.+||+|.+..+|.+
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEK-YDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEECCcccHHHHHHHHH-cCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 47999999999999999842 233 44555543 555555544 4422222122222234589999999998887
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. .-....+|-|+-|+|||||.+++.+
T Consensus 142 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FG----HERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TC----TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC----hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 63 1345678999999999999999864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.6e-06 Score=89.96 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhc--------------CCceeEEEEecCCHHHHHHHHHc-----------------CCCc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK--------------ELLTMCIANYEASGSQVQLTLER-----------------GLPA 331 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~--------------g~~~~sV~gvD~S~~ml~~A~er-----------------gl~~ 331 (697)
...+|+|+|||+|..|..++.. ..+..+|...|.........-+. +.+.
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3578999999999998887321 12356777778765543222110 0011
Q ss_pred EEEee---cccCCCCCCCCccEEEecccccccccc--------------------------------------HHHHHHH
Q 005432 332 MIGSF---ASKQLPYPSLSFDMLHCARCGVDWDQK--------------------------------------DGILLLE 370 (697)
Q Consensus 332 ~~~~~---da~~LPfpd~sFDlV~~~~~llh~~~d--------------------------------------~~~~L~E 370 (697)
.+..+ ....-.||+++||+|+++.+ +||..+ ...+|+.
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22223489999999999998 999752 2346888
Q ss_pred HHHhccCCeEEEEEeCCCC
Q 005432 371 VDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 371 l~RvLKPGG~Lvis~p~~~ 389 (697)
..+.|+|||.++++.....
T Consensus 211 ra~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHHEEEEEEEEEEEEECC
T ss_pred HHHHhCCCCEEEEEEecCC
Confidence 9999999999999987654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.6e-06 Score=90.84 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCchHHHHHhhc----------------CCceeEEEEecCC-----------HHHHHHHHH-cC--CCcEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSK----------------ELLTMCIANYEAS-----------GSQVQLTLE-RG--LPAMI 333 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~----------------g~~~~sV~gvD~S-----------~~ml~~A~e-rg--l~~~~ 333 (697)
.-+|+|+||++|..|..+... ..+..+|...|.. +.+.+.+.+ .+ .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999998887654 1245678888877 444443332 22 23455
Q ss_pred Eeeccc---CCCCCCCCccEEEeccccccccccHHH---------------------------------------HHHHH
Q 005432 334 GSFASK---QLPYPSLSFDMLHCARCGVDWDQKDGI---------------------------------------LLLEV 371 (697)
Q Consensus 334 ~~~da~---~LPfpd~sFDlV~~~~~llh~~~d~~~---------------------------------------~L~El 371 (697)
..+... .-.||+++||+|+++.+ +||..+... +|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 34589999999999998 999744321 25566
Q ss_pred HHhccCCeEEEEEeCCCCh
Q 005432 372 DRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 372 ~RvLKPGG~Lvis~p~~~~ 390 (697)
.+.|+|||.++++......
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 212 SEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHEEEEEEEEEEEECCCT
T ss_pred HHHhccCCeEEEEEecCCC
Confidence 8999999999999876544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=80.92 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------------CcccccccccccCCCCCCcccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------------GFVGVLHDWCEAFPTYPRTYDL 612 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------------Glig~~~~~~e~f~typrtyDl 612 (697)
-.+|||+|||.|.++.+|.+.. +. -+|+-+|-. ..+..+-++ .+-=+..|. +..+.-+.+||+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SF--EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDA 105 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TC--CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CC--CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCE
Confidence 3589999999999999998632 21 234444443 444444333 221122233 222222368999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHH----------------------HHHHHH----HHHhh
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR----------------------LIESAR----ALTTR 666 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~----------------------~~~~~~----~~~~~ 666 (697)
|-|..++.+... -.+..+|-|+-|+|+|||.+|...... ..++++ .+++.
T Consensus 106 V~~~~~l~~~~~----~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 181 (219)
T 3jwg_A 106 ATVIEVIEHLDE----NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEK 181 (219)
T ss_dssp EEEESCGGGCCH----HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHH
T ss_pred EEEHHHHHhCCH----HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHH
Confidence 999998877641 224578999999999999888643221 123344 77888
Q ss_pred cCceeEEeeeccC-----CCccEEEEEcc
Q 005432 667 LKWDARVIEIESN-----SDERLLICQKP 690 (697)
Q Consensus 667 ~~W~~~~~~~e~~-----~~~~~li~~K~ 690 (697)
-.+++.....-+. ...++.||+|.
T Consensus 182 ~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 182 YGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp HTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred CCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 8888877744332 25789999986
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-06 Score=83.89 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH
Q 005432 509 ENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI 587 (697)
Q Consensus 509 ~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i 587 (697)
..|...+..+.+.+...+. .-.+|||+|||.|.++..|.+.. + +|+-+|-. ..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~-----------------~~~~vLdiG~G~G~~~~~l~~~~-~----~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTP-----------------EASSLLDVACGTGTHLEHFTKEF-G----DTAGLELSEDMLTHA 78 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCT-----------------TCCEEEEETCTTSHHHHHHHHHH-S----EEEEEESCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcC-----------------CCCeEEEecccCCHHHHHHHHhC-C----cEEEEeCCHHHHHHH
Confidence 4566666666666654321 13589999999999999998732 2 44445543 455555
Q ss_pred hccC--cccccccccccCCCCCCccccccccC-ccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 588 LDRG--FVGVLHDWCEAFPTYPRTYDLVHAEG-LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 588 ~~RG--lig~~~~~~e~f~typrtyDl~H~~~-~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
-++. +--+..|..+ ++. +.+||+|.|.. .+.+.. +.-....+|-++-|+|+|||.+++.
T Consensus 79 ~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 79 RKRLPDATLHQGDMRD-FRL-GRKFSAVVSMFSSVGYLK---TTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp HHHCTTCEEEECCTTT-CCC-SSCEEEEEECTTGGGGCC---SHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCEEEECCHHH-ccc-CCCCcEEEEcCchHhhcC---CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4442 2112223322 333 68999999644 665543 2234567899999999999999996
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-06 Score=89.86 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCC------------
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPS------------ 345 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LP--fpd------------ 345 (697)
.+|||+|||+|.++..+++. ...|+++|.++.+++.|++. ++ ++.+..+|+..+. +.+
T Consensus 215 ~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 67999999999999999875 34799999999999888653 44 4667777765531 221
Q ss_pred --CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 346 --LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 346 --~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+||+|++..-. ..+..++.+.|+++|.+++..-.+
T Consensus 292 ~~~~fD~Vv~dPPr-------~g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 292 KSYQCETIFVDPPR-------SGLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp GGCCEEEEEECCCT-------TCCCHHHHHHHTTSSEEEEEESCH
T ss_pred ccCCCCEEEECcCc-------cccHHHHHHHHhCCCEEEEEECCH
Confidence 379999865321 123456777788999988877644
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=90.07 Aligned_cols=93 Identities=17% Similarity=0.059 Sum_probs=62.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
.+|||+|||.|.++..|.+.... |+-+|-. ..+..+-++.=|-..+.=-|.++.=+.+||+|.|..+| +|.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~-----v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~-- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFER-----VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF-- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSE-----EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC--
T ss_pred CCEEEEcCCCCHHHHHHHHhCCE-----EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHh--
Confidence 37999999999999999874433 3444433 44444433322222222234444334899999999888 343
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEE
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..+..+-|+-|+|||||.+++-
T Consensus 113 ----~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 ----DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEE
Confidence 3457899999999999999873
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-06 Score=78.87 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=83.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-.+|||+|||.|.++.+|.+. . . +|+-+|-. ..+..+-++ .+--+..| .+++ +.+||+|.+..++...
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~--~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~--~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEF--A-T--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIP--DNSVDFILFANSFHDM 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTT--E-E--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSC--TTCEEEEEEESCSTTC
T ss_pred CCeEEEECCCCCHHHHHHHhh--c-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCC--CCceEEEEEccchhcc
Confidence 468999999999999999862 2 2 66666654 566666555 22222233 4444 3799999999888765
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------------HHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------RLIESARALTTRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
. +...+|-|+-|+|+|||++++.+-. -..++++++.+ .|+..... +..+..-.+++.|
T Consensus 89 ~------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~-~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 89 D------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF-NPTPYHFGLVLKR 159 (170)
T ss_dssp S------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE-CSSTTEEEEEEEE
T ss_pred c------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc-CCCCceEEEEEec
Confidence 3 3457899999999999999996321 12456666666 66654432 2223455666665
Q ss_pred c
Q 005432 690 P 690 (697)
Q Consensus 690 ~ 690 (697)
+
T Consensus 160 ~ 160 (170)
T 3i9f_A 160 K 160 (170)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.8e-06 Score=91.76 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHHHHHHcCC------CcEEEeec---c
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLTLERGL------PAMIGSFA---S 338 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~---------------g~~~~sV~gvD~S~~ml~~A~ergl------~~~~~~~d---a 338 (697)
..-+|+|+||++|..+..+... ..+..+|...|......+.+-+.-. +..+..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3467999999999988776654 3456788899988777765544311 22444333 2
Q ss_pred cCCCCCCCCccEEEeccccccccccH---------------------------------HHHHHHHHHhccCCeEEEEEe
Q 005432 339 KQLPYPSLSFDMLHCARCGVDWDQKD---------------------------------GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 339 ~~LPfpd~sFDlV~~~~~llh~~~d~---------------------------------~~~L~El~RvLKPGG~Lvis~ 385 (697)
..-.||+++||+|+++.+ +||..+. ..+|+...+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 335689999999999998 9997442 134888899999999999998
Q ss_pred CCCCh
Q 005432 386 PLTNP 390 (697)
Q Consensus 386 p~~~~ 390 (697)
.+...
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-06 Score=83.75 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=86.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|.+...+-. .|+-+|-. ..+..+-++ |+ --+..|.. .++.-+.+||+|.+..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCSSCEEEEEEESC
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCCCCeeEEEeehh
Confidence 4799999999999999986320111 33334433 444444333 32 11222332 22322378999999988
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------------HHHHHHHHHHhhcCceeEEeeeccCCCccEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------RLIESARALTTRLKWDARVIEIESNSDERLL 685 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~l 685 (697)
+.... ....+|-|+-|+|+|||++++.+-. ...++++.+++.-.|+..... +..+...++
T Consensus 116 l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~-~~~~~~~~~ 188 (219)
T 3dh0_A 116 FHELS------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV-EVGKYCFGV 188 (219)
T ss_dssp GGGCS------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE-EETTTEEEE
T ss_pred hhhcC------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE-eeCCceEEE
Confidence 87664 2457899999999999999997411 125788888888889866542 223456677
Q ss_pred EEEcc
Q 005432 686 ICQKP 690 (697)
Q Consensus 686 i~~K~ 690 (697)
+++|+
T Consensus 189 ~~~k~ 193 (219)
T 3dh0_A 189 YAMIV 193 (219)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88876
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=78.11 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 626 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~ 626 (697)
.+|||+|||.|.++..|. ..|..+-+.+. .+.+ . ..|.. .++.-+.+||+|.|..++. +.
T Consensus 69 ~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----~~~~--~------~~d~~-~~~~~~~~fD~v~~~~~l~-~~--- 128 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR---NPVHCFDLASL----DPRV--T------VCDMA-QVPLEDESVDVAVFCLSLM-GT--- 128 (215)
T ss_dssp SCEEEETCTTCHHHHHCC---SCEEEEESSCS----STTE--E------ESCTT-SCSCCTTCEEEEEEESCCC-SS---
T ss_pred CeEEEECCcCCHHHHHhh---ccEEEEeCCCC----CceE--E------Eeccc-cCCCCCCCEeEEEEehhcc-cc---
Confidence 479999999999999884 34544444333 1111 1 11211 1232237899999988874 22
Q ss_pred CCCCcchhhhhhcccccCCcEEEEEcCHH---HHHHHHHHHhhcCceeEEeeeccCCCccEEEEEcc
Q 005432 627 HRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 627 ~~c~~~~~l~E~dRiLRP~G~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K~ 690 (697)
....+|-|+-|+|+|||++++.+-.. ..+++.++++...++....+. .+..--+++++|.
T Consensus 129 ---~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 129 ---NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-TNSHFFLFDFQKT 191 (215)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-CSTTCEEEEEEEC
T ss_pred ---CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEec
Confidence 34678999999999999999986543 457788888888888766432 2223467778775
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=9.5e-06 Score=84.39 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS 338 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da 338 (697)
....+.+.+.+... +. +|||||||+|.++..|++++ ..|+++|+++.|++.++++. .++.+..+|+
T Consensus 33 ~~i~~~Iv~~~~~~--------~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~ 100 (271)
T 3fut_A 33 EAHLRRIVEAARPF--------TG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA 100 (271)
T ss_dssp HHHHHHHHHHHCCC--------CS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCG
T ss_pred HHHHHHHHHhcCCC--------CC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECCh
Confidence 34455555555421 34 89999999999999999985 46999999999999998763 3577888899
Q ss_pred cCCCCCCC-CccEEEeccccccc
Q 005432 339 KQLPYPSL-SFDMLHCARCGVDW 360 (697)
Q Consensus 339 ~~LPfpd~-sFDlV~~~~~llh~ 360 (697)
..+++++. .||.|+++.- ++.
T Consensus 101 l~~~~~~~~~~~~iv~NlP-y~i 122 (271)
T 3fut_A 101 LLYPWEEVPQGSLLVANLP-YHI 122 (271)
T ss_dssp GGSCGGGSCTTEEEEEEEC-SSC
T ss_pred hhCChhhccCccEEEecCc-ccc
Confidence 88888653 6899998854 443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-06 Score=85.60 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=63.9
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc---CcccccccccccCCCCCCccccccccCcccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R---Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ ++--+..|..+.+ .+.+||+|+|.+++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGCS
T ss_pred cEEEECCCCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhhc
Confidence 599999999999999987432 33444433 444444444 3322223333333 358999999999988764
Q ss_pred CCCCCCCcchhhhhhc-ccccCCcEEEEEc
Q 005432 624 GHRHRCSTLDIFTEID-RILRPEGWVIIRD 652 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~d-RiLRP~G~~i~~d 652 (697)
+...+|-|+- |+|+|||++++.+
T Consensus 118 ------~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 ------DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ------SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2357999999 9999999999964
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-06 Score=86.54 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHHHc-CCCcEEEeecc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER-GLPAMIGSFAS 338 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~-~~sV~gvD~S~~ml~~A~er-gl~~~~~~~da 338 (697)
....+.+.+.+....+ .+|||||||+|.++..|++++.. ...++++|+++.|++.++++ ..++.+..+|+
T Consensus 28 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERG--------ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG
T ss_pred HHHHHHHHHhcCCCCc--------CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh
Confidence 3455566666654443 79999999999999999987432 13389999999999999876 34567888899
Q ss_pred cCCCCCC
Q 005432 339 KQLPYPS 345 (697)
Q Consensus 339 ~~LPfpd 345 (697)
..+++++
T Consensus 100 ~~~~~~~ 106 (279)
T 3uzu_A 100 LTFDFGS 106 (279)
T ss_dssp GGCCGGG
T ss_pred hcCChhH
Confidence 9888764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.1e-06 Score=80.03 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=65.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc---c-ccccccccCCCCCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli---g-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+|||+|||.|.++.+|.+. + -.+|+-+|-. ..+..+-++ |+- - +..|..+ ++.-+.+||+|.+..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--S--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--S--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CSSCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHc--C--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CCCCcccccEEEECch
Confidence 8999999999999999872 2 1345555543 555555444 432 1 2233322 3322389999999988
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. ....+|-|+-|+|+|||.+++.+
T Consensus 121 l~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 121 VFFWE------DVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhhcc------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 87653 34578999999999999999974
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.7e-05 Score=80.66 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=59.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc-cc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QK 363 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~-~d 363 (697)
.+||.++-+.|.++..+... ..++.+.-|....+..+..|...... ..+..+...||+|+.--- -+-. ..
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~d~v~~~~P-k~k~~~~ 117 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGR----MAVERLETSRAAFRCLTASGLQARLA----LPWEAAAGAYDLVVLALP-AGRGTAY 117 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTT----BEEEEEECBHHHHHHHHHTTCCCEEC----CGGGSCTTCEEEEEEECC-GGGCHHH
T ss_pred CcEEEecCCCCccccccCCC----CceEEEeCcHHHHHHHHHcCCCcccc----CCccCCcCCCCEEEEECC-cchhHHH
Confidence 68999999999877776532 23455555655555556667766331 112223468999974411 0000 11
Q ss_pred HHHHHHHHHHhccCCeEEEEEeC
Q 005432 364 DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+..|.++.+.|+|||.+++...
T Consensus 118 ~~~~l~~~~~~l~~g~~i~~~g~ 140 (381)
T 3dmg_A 118 VQASLVAAARALRMGGRLYLAGD 140 (381)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEEc
Confidence 35688999999999999998865
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.02 E-value=7.3e-06 Score=81.05 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=62.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cc-ccccccccCCCCCCccccccccC-c
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEG-L 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig-~~~~~~e~f~typrtyDl~H~~~-~ 618 (697)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ |+ +- +..|.. .++ ++.+||+|.+.. +
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC-----cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCC-ccCCceEEEEcCcc
Confidence 4799999999999999987422 34444543 444444333 22 11 122222 233 347899999987 8
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+.+.. +.-....+|-++-|+|+|||.+++
T Consensus 112 l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYII---DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCC---SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccC---CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 87663 223456789999999999999998
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=86.24 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=78.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccc---cCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCE---AFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e---~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||.|.|+.+|.+.+. +|+-+|-. ..+..+-++ +--+..|..+ +|+. .+||+|.+..++.+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~--~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI-----ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPD--KYLDGVMISHFVEHL 114 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC-----CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCT--TCBSEEEEESCGGGS
T ss_pred CeEEEEeCCCCHHHHHHHhCCC-----cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCC--CCeeEEEECCchhhC
Confidence 5799999999999999987433 33444443 666666666 2112222222 4443 899999999888776
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------------------HHHHHHHHHHhhcCceeEEe
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
. .-.+..+|-|+-|+|+|||++++.... -..++++.+++.-.++....
T Consensus 115 ~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 D----PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp C----GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred C----cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 4 124568999999999999999996321 11256667777766765443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=79.95 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCCcEEEeeccc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASK 339 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~~~~~~~da~ 339 (697)
....+.+.+.+.... ..+|||||||+|.++..|++++ ...++++|+++.+++.++++ ..++.+..+|+.
T Consensus 17 ~~i~~~iv~~~~~~~--------~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 17 EGVLKKIAEELNIEE--------GNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDAS 86 (249)
T ss_dssp HHHHHHHHHHTTCCT--------TCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTT
T ss_pred HHHHHHHHHhcCCCC--------cCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchh
Confidence 345556666655443 3799999999999999999884 35799999999999999876 224678888999
Q ss_pred CCCCCCCC-ccEEEeccccccccccHHHHHHHHHHhc--cCCeEEEEE
Q 005432 340 QLPYPSLS-FDMLHCARCGVDWDQKDGILLLEVDRVL--KPGGYFVWT 384 (697)
Q Consensus 340 ~LPfpd~s-FDlV~~~~~llh~~~d~~~~L~El~RvL--KPGG~Lvis 384 (697)
.+++++.. ...|+++.- ++.. ..++..+.... -+.+.+++.
T Consensus 87 ~~~~~~~~~~~~vv~NlP-y~i~---~~il~~ll~~~~~~~~~~~m~Q 130 (249)
T 3ftd_A 87 KFPFCSLGKELKVVGNLP-YNVA---SLIIENTVYNKDCVPLAVFMVQ 130 (249)
T ss_dssp TCCGGGSCSSEEEEEECC-TTTH---HHHHHHHHHTGGGCSEEEEEEE
T ss_pred hCChhHccCCcEEEEECc-hhcc---HHHHHHHHhcCCCCceEEEEEe
Confidence 88876522 225555533 3321 23444444332 334555553
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=87.53 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-------------------CCC-cEEEeecccCCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------------------GLP-AMIGSFASKQLPY 343 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er-------------------gl~-~~~~~~da~~LPf 343 (697)
..+|||+|||+|.++..++++. ....|+++|+++.+++.+++. ++. +.+...|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4789999999999999999872 234699999999999887642 444 5566666654421
Q ss_pred -CCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 344 -PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 344 -pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
..+.||+|++.-- .....++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP~-----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF-----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1357999995421 123578999999999999988875
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.7e-06 Score=93.38 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---C--------------ceeEEEEecCCHHHHHHHHHc----CCC------cEEEee
Q 005432 284 VRTILDIGCGYGSFGAHLFSKE---L--------------LTMCIANYEASGSQVQLTLER----GLP------AMIGSF 336 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g---~--------------~~~sV~gvD~S~~ml~~A~er----gl~------~~~~~~ 336 (697)
..+|||.+||+|.++..+++.- . ....++|+|+++.+++.|+.. ++. ..+.++
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 4789999999999988776531 0 124699999999999988753 444 456666
Q ss_pred cccCCC-CCCCCccEEEecccccccc------------cc-HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 337 ASKQLP-YPSLSFDMLHCARCGVDWD------------QK-DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 337 da~~LP-fpd~sFDlV~~~~~llh~~------------~d-~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+...+ .+.+.||+|+++--+.... .+ ...++..+.+.|||||++++..|.
T Consensus 250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 654433 3457899999985422111 11 236899999999999999998773
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-05 Score=90.12 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchH---HHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--Cc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSF---GAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PA 331 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~---a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~ 331 (697)
..|.+.+.+.+.......-.......|||||||+|.+ +...++++...+.|+++|-++. ...|++ .+. .+
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkV 413 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQV 413 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGE
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeE
Confidence 4555566655543211111112345799999999988 5555555545668999999974 434432 233 46
Q ss_pred EEEeecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEE
Q 005432 332 MIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 332 ~~~~~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lv 382 (697)
++..++++++..| +.+|+|++.-...-.. +.....|....|.|||||.++
T Consensus 414 tVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 414 TVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 7788899988877 4899999974322111 222357888899999999876
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=4.6e-06 Score=86.45 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=66.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc----cccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli----g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|+++..|.+. .+ .+|+-+|-. ..+..+-++ |+- -+..|+.+ + +.+||+|.+..
T Consensus 74 ~~vLDiGcG~G~~~~~la~~-~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~~~fD~v~~~~ 145 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAE-YD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-F---DEPVDRIVSLG 145 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-C---CCCCSEEEEES
T ss_pred CEEEEeeccCcHHHHHHHHh-CC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-c---CCCccEEEEcc
Confidence 47999999999999999873 13 234444543 555555443 542 22334432 3 78999999999
Q ss_pred ccccccCCC---CCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHR---HRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~---~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+|.+..... ..-....+|-|+-|+|+|||.+++.+
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988774100 11334579999999999999999863
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.1e-06 Score=82.62 Aligned_cols=119 Identities=13% Similarity=-0.001 Sum_probs=79.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc----ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|.+.. .+|+-+|-. ..+..+-++ |... +..|..+.. .+.+||+|.+..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~ 140 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE-----RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--PTELFDLIFDYV 140 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT-----EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--CSSCEEEEEEES
T ss_pred CCEEEeCCCCCHHHHHHHhCC-----CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--CCCCeeEEEECh
Confidence 389999999999999998632 234444543 444444333 3222 223333322 236899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------HHHHHHHHHHhhcCceeEEeee
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------RLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
+|.... .-....+|-++-|+|+|||++++.+-. -..++++++.+.-.|+....+.
T Consensus 141 ~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 141 FFCAIE----PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp STTTSC----GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhcCC----HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 887653 234567899999999999999985321 1357888888888898766543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=76.98 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+ .+. .+|+-+|-. ..+..+-++ |+-.+----+..++..+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~--~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHK--LGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHH--TTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred CEEEEECCCCCHHHHHHHH--CCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4799999999999999886 322 134444443 444444433 4422111111222233589999999776654
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCceeEEe
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
. ..++-++-|+|+|||++++.+ .....+.+..+.....++....
T Consensus 138 ~---------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 138 L---------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp H---------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred H---------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 3 368999999999999999974 3345667777777777776554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=78.70 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=87.2
Q ss_pred eEEEecccC-chhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-ccc-cccccccCCCCC-CccccccccC
Q 005432 547 RNVLDMNAH-FGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VGV-LHDWCEAFPTYP-RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g-~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-ig~-~~~~~e~f~typ-rtyDl~H~~~ 617 (697)
.+|||+||| .|.++.+|... . .-+|+-+|-. ..+..+-+ .|+ +-+ ..|+. .+..+| .+||+|-++-
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~--~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKF--F--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-IIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHH--H--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SSTTTCCSCEEEEEECC
T ss_pred CEEEEcCCCHHHHHHHHHHHh--c--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hhhhcccCceeEEEECC
Confidence 579999999 99999988863 1 1234444443 33433332 343 222 22321 233333 7999999976
Q ss_pred ccccccC------------C-CCCCCcchhhhhhcccccCCcEEEE--EcCHHHHHHHHHHHhhcCceeEEeeeccCC-C
Q 005432 618 LLSLESG------------H-RHRCSTLDIFTEIDRILRPEGWVII--RDTARLIESARALTTRLKWDARVIEIESNS-D 681 (697)
Q Consensus 618 ~~~~~~~------------~-~~~c~~~~~l~E~dRiLRP~G~~i~--~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~-~ 681 (697)
.|..... . .....+..++-++-|+|+|||++++ ....+..+++.++++...|++.......+. -
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~ 211 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRW 211 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-C
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeE
Confidence 5543210 0 0011135788999999999999998 345577888889999999988877655554 3
Q ss_pred ccEEEEEcc
Q 005432 682 ERLLICQKP 690 (697)
Q Consensus 682 ~~~li~~K~ 690 (697)
-.+++++|.
T Consensus 212 ~~~l~f~~~ 220 (230)
T 3evz_A 212 RHSLIFFKG 220 (230)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 567777764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-06 Score=85.24 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=65.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|||+|||.|.++.+|.+... +|+-+|-. ..+..+-+ .|+ +- +..|. +.++.-+.+||+|.|..
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRY 95 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEES
T ss_pred CCEEEEEccCcCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECC
Confidence 35799999999999999987422 45555543 44444333 243 22 22233 33443348999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.++. +...+|-|+-|+|||||++++.+
T Consensus 96 ~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHFS------DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcc------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887664 34688999999999999999964
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.3e-06 Score=85.55 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=80.9
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----ccc-ccccccccCCCCCCccccccccCcc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVG-VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig-~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
-.+|||+|||.|.++.+|++.. .-+|+-+|-. ..+..+-++- -+- +..|..+ ++.-+.+||+|.|..++
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKL----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-ATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHH----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHhh----cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CCCCCCCeEEEEEcchh
Confidence 4689999999999999998631 1134444433 4455554442 121 2233332 33323799999999988
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeee
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
.+.. . -....+|-|+-|+|||||++++.+.. ...++++++++.-.++......
T Consensus 169 ~~~~---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 169 IYLT---D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred hhCC---H-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 7763 1 23557899999999999999997631 1246778888888888765543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.9e-05 Score=84.83 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCC-C-CCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-P-YPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~L-P-fpd~sFDlV~~~ 354 (697)
+.+|||++||+|.++..++.+......|+++|+++.+++.+++. ++. +.+..+|+..+ . ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 47899999999999999998521235799999999999887653 553 56666675443 1 124579999987
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
- + .....++..+.+.|+|||+++++.
T Consensus 133 P--~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P--F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C--S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 1 123468999999999999988876
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.4e-06 Score=78.43 Aligned_cols=142 Identities=11% Similarity=-0.008 Sum_probs=78.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cC--cccccccccccCCC---CCCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG--FVGVLHDWCEAFPT---YPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RG--lig~~~~~~e~f~t---yprtyDl~H~ 615 (697)
=.+|||+|||.|.++.+|.+.... .+|+-+|-. ..+..+-+ .| +-=+..|..++++. .+.+||+|-+
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTT---EEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCEEEEecCCHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 358999999999999999874212 133333332 22222222 12 22233455554442 2378999999
Q ss_pred cCccccccCC----------CCCCC----------cchhhhhhcccccCCcE-EEEEcCHHHHHHHHHHHh--hcCceeE
Q 005432 616 EGLLSLESGH----------RHRCS----------TLDIFTEIDRILRPEGW-VIIRDTARLIESARALTT--RLKWDAR 672 (697)
Q Consensus 616 ~~~~~~~~~~----------~~~c~----------~~~~l~E~dRiLRP~G~-~i~~d~~~~~~~~~~~~~--~~~W~~~ 672 (697)
+--|...... ..... +..++-++-|+|+|||+ +++.-.....+++.++.. .-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 6554321100 00011 15788999999999999 777544455666777777 5556543
Q ss_pred EeeeccCCCccEEEEEcc
Q 005432 673 VIEIESNSDERLLICQKP 690 (697)
Q Consensus 673 ~~~~e~~~~~~~li~~K~ 690 (697)
....+..+.+++++++|.
T Consensus 188 ~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEECTTSCEEEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEc
Confidence 332333445788888764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.2e-06 Score=84.75 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=63.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---c-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|.+. ... +|+-+|-. ..+..+-+ .|+- - +..|+.+ ++. +.+||+|.|..
T Consensus 38 ~~VLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARD-HGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVG 111 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHH-TCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHh-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECC
Confidence 47999999999999999863 121 33444433 44443332 3542 1 2233332 333 68999999987
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. +...+|-|+-|+|||||++++.+
T Consensus 112 ~~~~~~------~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIAG------GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGTS------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhcC------CHHHHHHHHHHHcCCCeEEEEec
Confidence 776543 35678999999999999999964
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=77.04 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=83.5
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc---CcccccccccccCCCCCCccccccccCcccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R---Glig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
-.+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-++ .+--+..|..+ ++ ++.+||+|.|..++..
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR-----TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhc
Confidence 35899999999999999987322 44444543 445444444 22222223322 22 2389999999988876
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcC----HH---------------------------HHHHHHHHHhhcCce
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----AR---------------------------LIESARALTTRLKWD 670 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----~~---------------------------~~~~~~~~~~~~~W~ 670 (697)
... . ....+|-|+-|+|+|||++++.+. .. ..++++++++.-.++
T Consensus 119 ~~~---~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 119 LTD---D-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp SCH---H-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred CCh---H-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence 641 1 112389999999999999999742 11 136777888888887
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005432 671 ARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K~ 690 (697)
+..... .+-.=++.++|+
T Consensus 195 v~~~~~--~~~~w~~~~~~~ 212 (220)
T 3hnr_A 195 VTFTRL--NHFVWVMEATKQ 212 (220)
T ss_dssp EEEEEC--SSSEEEEEEEEC
T ss_pred EEEeec--cceEEEEeehhh
Confidence 665542 222335555554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.7e-06 Score=90.53 Aligned_cols=153 Identities=8% Similarity=0.072 Sum_probs=105.3
Q ss_pred cccCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEee
Q 005432 497 YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVV 576 (697)
Q Consensus 497 ~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~ 576 (697)
+......|...+..|......+.+.+-..+. + ..=.+|||+|||.|.++.+|.+. .. +|+
T Consensus 74 y~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~--~~~~~VLDiGcG~G~~~~~l~~~--g~---~v~ 133 (416)
T 4e2x_A 74 FHEVYPYHSSGSSVMREHFAMLARDFLATEL-------------T--GPDPFIVEIGCNDGIMLRTIQEA--GV---RHL 133 (416)
T ss_dssp SSTTCCCCGGGCHHHHHHHHHHHHHHHHTTT-------------C--SSSCEEEEETCTTTTTHHHHHHT--TC---EEE
T ss_pred ccCCccCcCcCCHHHHHHHHHHHHHHHHHhC-------------C--CCCCEEEEecCCCCHHHHHHHHc--CC---cEE
Confidence 3334556667778898888888776544331 1 12348999999999999999873 32 556
Q ss_pred cCCCC-CchhhHhccCcccccccc----cccCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 577 PTIGT-NHLPMILDRGFVGVLHDW----CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 577 p~~~~-~~l~~i~~RGlig~~~~~----~e~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
=+|-. +.+..+-++|+-.....+ .+.++.-+.+||+|.+.++|.+.. +...+|-|+-|+|+|||++++.
T Consensus 134 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~------d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 134 GFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIP------YVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp EECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCT------THHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 66655 777888888763322111 111221137899999999988774 3568999999999999999997
Q ss_pred cCH--------------------HHHHHHHHHHhhcCceeEEee
Q 005432 652 DTA--------------------RLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 652 d~~--------------------~~~~~~~~~~~~~~W~~~~~~ 675 (697)
... ...++++.+++.-.++.....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 208 DPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp EECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred eCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence 421 113578888888888766554
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-06 Score=83.51 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=67.9
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccc-cccccccCCCCCCccccccccCc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.-.+|||+|||.|.++.+|.+.. -+|+-+|-. ..+..+-++. -+-+ ..|. +.++ .+.+||+|.|..+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC-----KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE-----EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEESC
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC-----CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEccH
Confidence 45789999999999999998731 356666654 4555554442 1222 2232 2233 2589999999988
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. +.-.+..+|-|+-|+|+|||++++.+
T Consensus 124 l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 124 LYYLE---DMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhCC---CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 88765 33344567999999999999999964
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=76.01 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=77.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc---cccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---GVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli---g~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|.+. .+- ..|+-+|-. ..+..+-++ |+- -+..|..+.++..+.+||+|.+...
T Consensus 27 ~~vldiG~G~G~~~~~l~~~-~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRS-TPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTT-SSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CeEEEeCCCCCHHHHHHHHH-CCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 58999999999999998863 221 234444443 444444432 432 2334555666665578999998776
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
+.. ..++-++-|+|+|||.+++.+. .+....+..+.+...+++...
T Consensus 104 ~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 104 LTA----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TTC----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred ccH----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEE
Confidence 654 3589999999999999999764 455666667777766665443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.2e-06 Score=84.71 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=65.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++..|.+. ... +|+-+|-. ..+..+-++ |+-..+.-.+..+..+|.+||+|.+..+|.+
T Consensus 92 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVER-FDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEEcccchHHHHHHHHH-CCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 37999999999999999863 122 44444543 555555444 5422122122222334589999999988876
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. .-....+|-|+-|+|+|||.+++.+
T Consensus 168 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 FG----HENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp TC----GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 53 1245678999999999999999863
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-06 Score=84.76 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=64.6
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|||+|||.|.++..|.+... .|+-+|-. ..+..+-+ +|+- -+..|..+ ++.-+.+||+|.+..
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-MPFTDERFHIVTCRI 111 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-CCSCTTCEEEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-CCCCCCCEEEEEEhh
Confidence 45899999999999999987322 45555543 44544433 3431 12233322 332238999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.++. +...+|-|+-|+|||||++++.+
T Consensus 112 ~l~~~~------d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP------NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 887664 34579999999999999999963
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-06 Score=87.21 Aligned_cols=95 Identities=22% Similarity=0.352 Sum_probs=65.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+. .+. +|+-+|-. ..+..+-+ .|+ +- +..|.. .+|.-+.+||+|.+..
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHH-hCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCCCCCCCEeEEEecc
Confidence 48999999999999999863 122 45555543 45544433 343 11 222332 2332237999999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. + ...+|-|+-|+|||||++++.+
T Consensus 159 ~l~~~~---~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 159 AFLHSP---D---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp CGGGCS---C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcC---C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 888775 3 5689999999999999999974
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.6e-05 Score=80.92 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=76.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cccc----cccccc-ccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVG----VLHDWC-EAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig----~~~~~~-e~f~typrtyDl~H~~~~ 618 (697)
++|||+|||+|+|+..|++.+. -.|+-+|-. ++|...+.+ .++. -+.... +.++. .+||++-|+..
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga----~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~--~~fD~v~~d~s 160 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA----KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE--GLPSFASIDVS 160 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT--CCCSEEEECCS
T ss_pred cEEEecCCCccHHHHHHHhCCC----CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC--CCCCEEEEEee
Confidence 5899999999999999987321 134444543 667654431 1110 111111 22332 45999999887
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC----------------------HHHHHHHHHHHhhcCceeEEee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------------------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------------------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
|... ..+|-|+-|+|+|||.+++--+ ...++++.+++....|.+....
T Consensus 161 f~sl---------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 161 FISL---------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp SSCG---------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HhhH---------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 7644 3799999999999999987411 1367888899999999877654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=76.18 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=75.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc----ccccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl----ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.. -+|+-+|.. ..+..+-+ .|+ --+..|+.+.++.. .+||+|-++.
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~ 108 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV-----RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGG 108 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS-----SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhc-----CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECC
Confidence 489999999999999998632 244444443 33433333 232 11233444444432 3799999876
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.+... ..++-++-|+|+|||.+++.+. .....++.++.+...|++...
T Consensus 109 ~~~~~---------~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 109 SGGEL---------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp CTTCH---------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred chHHH---------HHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 65433 4789999999999999999753 566777888887777765544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.3e-06 Score=84.54 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=74.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-cc-ccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-ig-~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.|..+|
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-----DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVF 194 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSG
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccch
Confidence 4799999999999999987432 44555543 33433332 343 11 1223322 232 6899999999988
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC--------------HHHHHHHHHHHhhcCceeEEee
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
.+.. .-.+..+|-++-|+|+|||++++-.. .-.-++++++... |++...+
T Consensus 195 ~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 195 MFLN----RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGSC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhCC----HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 7653 23455799999999999999777311 0113456666665 8876654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.9e-06 Score=84.68 Aligned_cols=96 Identities=15% Similarity=0.250 Sum_probs=63.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--ccc-cccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|.+..... .|+-+|-. ..+..+-++ |+ +-+ ..|.. .++.-+.+||+|++..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEESC
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEech
Confidence 589999999999999998741122 33333433 444444332 43 111 22332 23333489999999998
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.... ....+|-++-|+|||||++++.+
T Consensus 115 l~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHLQ------SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87664 23478999999999999999964
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=75.43 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=82.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC--cccccccccccCCCCCCcccccccc-Cccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAE-GLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG--lig~~~~~~e~f~typrtyDl~H~~-~~~~~~ 622 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|.+. .++...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS
T ss_pred CeEEEECCCCCHHHHHHHHCCC-----cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhc
Confidence 4799999999999999987422 34444443 3343333331 2112223332 22213789999997 555543
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCH---HHHHHHHHHHhhcCceeEEeeecc-------CCCccEEEEEcc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESARALTTRLKWDARVIEIES-------NSDERLLICQKP 690 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~~~~~~~~W~~~~~~~e~-------~~~~~~li~~K~ 690 (697)
. .-....+|-++-|+|+|||.+++.... ...+++.++++...+++......- ...--++|++|+
T Consensus 122 ~----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 A----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp C----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 2 122357899999999999999996432 246777788888888776553221 112336777764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.9e-05 Score=73.14 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=85.9
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC-
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH- 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~- 625 (697)
.|||+|||.|.++.+|.+. - +|+-+|-. ..+.. ...+--+..|..++++. .+||+|-++..|......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~--~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKR--N----TVVSTDLNIRALES--HRGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp EEEEETCTTCHHHHHHTTT--S----EEEEEESCHHHHHT--CSSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCT
T ss_pred eEEEeccCccHHHHHHHhc--C----cEEEEECCHHHHhc--ccCCeEEECChhhhccc--CCCCEEEECCCCccCCccc
Confidence 7999999999999999863 2 55555554 33333 33333344555555543 899999998777643210
Q ss_pred --CCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEE
Q 005432 626 --RHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIEIESNSDERLLICQ 688 (697)
Q Consensus 626 --~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~ 688 (697)
........++-++=|.| |||.+++.. .....+++.++++...|+.........+-+++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 01122335666777777 999999965 335577888888888999877765555566666554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-06 Score=82.91 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=64.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-------ccccccccccCCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-------VGVLHDWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-------ig~~~~~~e~f~typrtyDl~H 614 (697)
.+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+ .|+ +-+...=.+.++.-+.+||+|.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY-----SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 4799999999999999987432 44444443 44444433 333 1111111222332247999999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+..++.... +.-....+|-++-|+|||||.+++.+
T Consensus 107 ~~~~l~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSVP---DPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGCC---CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcCC---CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 998887765 32333378999999999999999964
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.8e-06 Score=80.70 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=78.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----CcccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++..|.+.... +|+-+|-. ..+..+-++ .+--+..|..+ ++.-+.+||+|-+..++.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~----~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP----NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC----CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC----cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchh
Confidence 47999999999999999874321 33333332 333333332 12122233332 222137899999988876
Q ss_pred cccCCC---------CCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHH--hhcCceeEEeeeccCCCccEEEEEc
Q 005432 621 LESGHR---------HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALT--TRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 621 ~~~~~~---------~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~--~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
...... +......+|-|+-|+|+|||.+++.+-...- ..+.+. ....|+......+++..-.+.+++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHK 197 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcceEEEEEEEe
Confidence 543000 0123468999999999999999998653211 112222 3346876665443333334555554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=80.13 Aligned_cols=94 Identities=21% Similarity=0.191 Sum_probs=64.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+.... +|+-+|-. ..+..+-++. +--+..|. +.++.-+.+||+|.|..++..
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAK----KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhh
Confidence 58999999999999999874321 44444543 4555554442 21122232 234432489999999998876
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.. ....+|-|+-|+|+|||.+++.
T Consensus 121 ~~------~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 121 IA------SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CS------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------hHHHHHHHHHHHcCCCcEEEEE
Confidence 63 3567999999999999999996
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.4e-06 Score=84.87 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=63.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cc-ccccccccCCCCCCccccccccCc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
-.+|||+|||.|.++..|.+. .+- .-.|+-+|-. ..+..+-++ |+ +- +..|.. .++ ++.+||+||+..+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~-~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPL-LPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHAF 98 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTT-SCT-TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEESC
T ss_pred CCeEEEecCCCCHHHHHHHHh-CCC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEECCh
Confidence 358999999999999999863 110 0122333322 333333222 21 11 223333 233 3689999999998
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
+.... +...+|-|+-|+|+|||++++.+..
T Consensus 99 l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMT------TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCS------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCC------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 87654 3358999999999999999987543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-06 Score=79.41 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=76.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccc-cccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|... .+- .+|+-+|.. ..+..+-+ .|+ +-+ ..|+.+..+ +.+||+|.+..+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~~~ 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIV-RPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--EPPFDGVISRAF 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHH-CTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--CSCEEEEECSCS
T ss_pred CeEEEECCCCCHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc--cCCcCEEEEecc
Confidence 37999999999999998863 121 134444433 33333332 244 222 223333221 368999998432
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEee---ecc-CCCccEEEEEcc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE---IES-NSDERLLICQKP 690 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~---~e~-~~~~~~li~~K~ 690 (697)
.....++-++-|+|+|||++++......-++++++.+ .|+..... ..+ +....++++.|.
T Consensus 142 ----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ----------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 2244789999999999999999865555566666665 67755421 112 334667777663
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-06 Score=83.19 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=75.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+. ... +|+-+|-. ..+..+-+ .|+-. +..|+ +.++.-+.+||+|+|..
T Consensus 48 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGH-VTG---QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTT-CSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCC---EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcC
Confidence 58999999999999999873 122 33333433 44444433 34322 23333 33443247999999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------H----------HHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~----------~~~~~~~~~~~~~W~~~~~ 674 (697)
++.+. +...+|-++-|+|||||++++.+.. . ..+++.++++..-++....
T Consensus 123 ~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 123 AIYNI-------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CGGGT-------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred Cceec-------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 87654 3467899999999999999997421 1 2356667777777776543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.8e-06 Score=82.66 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=61.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-cccccccccccCCCCCCccccccccCcccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-lig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
-.+|||+|||.|.++..|.+.+..| +-+|-. ..+..+-++. +--+..|. +.++.-+.+||+|||..++.++.
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~~v-----~gvD~s~~~~~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~ 108 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGLFV-----YAVEPSIVMRQQAVVHPQVEWFTGYA-ENLALPDKSVDGVISILAIHHFS 108 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTCEE-----EEECSCHHHHHSSCCCTTEEEECCCT-TSCCSCTTCBSEEEEESCGGGCS
T ss_pred CCEEEEEcCcccHHHHHHHhCCCEE-----EEEeCCHHHHHHHHhccCCEEEECch-hhCCCCCCCEeEEEEcchHhhcc
Confidence 3589999999999999998743333 333322 3333232332 21122233 33443348999999999887653
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+...+|-|+-|+|| ||++++.
T Consensus 109 ------~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 109 ------HLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp ------SHHHHHHHHHHHBC-SSCEEEE
T ss_pred ------CHHHHHHHHHHHhC-CcEEEEE
Confidence 35589999999999 9988875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=79.11 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=62.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cc-ccccccccCCCCCCccccccccC-c
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEG-L 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig-~~~~~~e~f~typrtyDl~H~~~-~ 618 (697)
.+|||+|||.|.++..|.+ . .+|+-+|-. ..+..+-++ |. +- +..|..+ ++ .+.+||+|.+.. +
T Consensus 35 ~~vLdiG~G~G~~~~~l~~--~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~ 106 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLAD--H----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDS 106 (243)
T ss_dssp CEEEEESCTTCHHHHHHTT--T----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTG
T ss_pred CeEEEecCCCCHHHHHHhh--C----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCc
Confidence 5899999999999999986 2 355555543 444444433 21 11 1223222 22 358999999875 6
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+.+.. +.-....+|-++-|+|+|||.+++
T Consensus 107 ~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 107 LNYLQ---TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GGGCC---SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhcC---CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 66553 334556789999999999999998
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.9e-06 Score=80.69 Aligned_cols=116 Identities=18% Similarity=0.146 Sum_probs=79.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc----ccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF----VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl----ig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-+++. --+..|.. .++.-+.+||+|.+..++.+
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY-----KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhh
Confidence 3899999999999999997422 44444543 56666666632 11122222 23322489999999988876
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------------HHHHHHHHHHhhcCceeEEe
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. ....+|-|+-|+|+|||++++.+.. ...++++.+++.-.++....
T Consensus 129 ~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 TE------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SS------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cc------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 54 2347899999999999999996410 12356788888888887654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=80.11 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=77.5
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----C-----------------------------
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G----------------------------- 591 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----G----------------------------- 591 (697)
-.+|||+|||.|.++..|... .. -+|+-+|-. ..+..+-++ +
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACE--SF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGG--TE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhc--cc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 468999999999999988762 22 345555543 334333221 1
Q ss_pred ---c-ccccccccccCCCCC---CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------
Q 005432 592 ---F-VGVLHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------- 654 (697)
Q Consensus 592 ---l-ig~~~~~~e~f~typ---rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------- 654 (697)
+ --+..|..+.-+.-+ .+||+|.|..++..... +.-....+|-|+-|+|+|||++|+.+..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP--DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC--ChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 1 112233333222123 79999999888874321 1113457899999999999999997521
Q ss_pred ------HHHHHHHHHHhhcCceeEEeee
Q 005432 655 ------RLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 655 ------~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
-..+++.+++....++......
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 1245777888777887765543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=5.9e-06 Score=82.90 Aligned_cols=116 Identities=13% Similarity=0.198 Sum_probs=77.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc----cccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
..|||+|||.|.++..|.+. .+. .|+-+|-. ..+..+-+ .|+- -+..|. +.++.-+.+||+|+|..
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~-~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADY-VKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHH-CCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEES
T ss_pred CeEEEeCCCCCHHHHHHHHh-CCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecC
Confidence 38999999999999999874 232 44444543 44544433 3442 223344 34443348999999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------H----------HHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------~----------~~~~~~~~~~~~~W~~~~~ 674 (697)
++.+. +...+|-|+-|+|||||++++.+.. . ..+++.++++.-.++...+
T Consensus 123 ~l~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 123 AIYNI-------GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CSCCC-------CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hHhhc-------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 87653 3557999999999999999997521 1 2355667777777765543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.81 E-value=7e-06 Score=80.11 Aligned_cols=118 Identities=23% Similarity=0.206 Sum_probs=81.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-CcccccccccccCCCCCCccccccccCccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ ++--...|.. .++ .+.+||+|.|..++.+..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~- 116 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-----DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVP- 116 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSC-
T ss_pred CcEEEECCCCCHHHHHHHHcCC-----eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcC-
Confidence 4799999999999999987422 44445543 555555555 4432333332 234 458999999998887653
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEcCH---------------HHHHHHHHHHhhcC-ceeEEee
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLK-WDARVIE 675 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~-W~~~~~~ 675 (697)
.-....+|-|+-|+|+|||++++.... ...++++.+++.-. |+.....
T Consensus 117 ---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 117 ---RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp ---HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 124557999999999999999996221 24678888888888 8876554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.6e-05 Score=81.25 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=63.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||.|.++.+|.+... +|+-+|-. ..+..+-++ ++--+..|.. .++ ++.+||+|++..++....
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGA-----EVLGTDNAATMIEKARQNYPHLHFDVADAR-NFR-VDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSCEEECCTT-TCC-CSSCEEEEEEESCGGGCS
T ss_pred CEEEEecCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChh-hCC-cCCCcCEEEEcchhhhCc
Confidence 5899999999999999987332 33333433 444444444 2222222332 244 378999999988877543
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+...+|-|+-|+|||||++++.
T Consensus 132 ------d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 132 ------EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCcEEEEE
Confidence 3457899999999999999996
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.6e-05 Score=75.84 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=76.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCCCC-CCcccccccc-C
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTY-PRTYDLVHAE-G 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~ty-prtyDl~H~~-~ 617 (697)
..|||+|||.|.++..|.+... .|+-+|-. ..+..+-+ .|+ +-+.++-.+.++.+ +.+||+|.++ +
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~-----~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK-----KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 3799999999999999987322 34444433 44444333 354 33444444443323 4789999765 2
Q ss_pred ccccccCC--CCCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcC---ceeEEeeeccC--CCccE
Q 005432 618 LLSLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLK---WDARVIEIESN--SDERL 684 (697)
Q Consensus 618 ~~~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~---W~~~~~~~e~~--~~~~~ 684 (697)
.+..-... ...-.....|-|+-|+|||||.+++..- .+..+.+.+.+..+. |.+.....-+. ....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence 22210000 0001122567899999999999998532 234456666666665 76655544333 12344
Q ss_pred EEEEc
Q 005432 685 LICQK 689 (697)
Q Consensus 685 li~~K 689 (697)
++.+|
T Consensus 179 ~~i~~ 183 (185)
T 3mti_A 179 VMLEK 183 (185)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=78.44 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=65.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCccccccccc---ccCCCCCCccccccccCcccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWC---EAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~---e~f~typrtyDl~H~~~~~~~ 621 (697)
-.+|||+|||.|.++.+|.+. + .+|+-+|-. ..+..+-++..--+..|.. .+|+ +.+||+|.+..++.+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~--~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN--G---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE--EEQFDCVIFGDVLEH 105 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT--T---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSC--TTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHhc--C---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCC--CCccCEEEECChhhh
Confidence 358999999999999999873 3 345555544 4455555443211222333 3333 279999999988876
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. +...+|-|+-|+|+|||++++..
T Consensus 106 ~~------~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 106 LF------DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp SS------CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred cC------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 64 23579999999999999999963
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-05 Score=80.15 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCH-------HHHHHHHHc----CC--CcEEEeecccCC-C-CCC--C
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG-------SQVQLTLER----GL--PAMIGSFASKQL-P-YPS--L 346 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~-------~ml~~A~er----gl--~~~~~~~da~~L-P-fpd--~ 346 (697)
..+|||+|||+|.++..+++.+ ..|+++|.++ .+++.|++. ++ .+.+..+|+..+ + +++ +
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred cCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 4789999999999999999875 4689999999 888888653 22 367777777663 3 444 6
Q ss_pred CccEEEeccc
Q 005432 347 SFDMLHCARC 356 (697)
Q Consensus 347 sFDlV~~~~~ 356 (697)
+||+|++...
T Consensus 161 ~fD~V~~dP~ 170 (258)
T 2r6z_A 161 KPDIVYLDPM 170 (258)
T ss_dssp CCSEEEECCC
T ss_pred CccEEEECCC
Confidence 8999999765
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.4e-06 Score=77.31 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=72.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-----ccccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-----VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-----ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++.+|.+.. -+|+-+|-. ..+..+-++ |+ --+..|+.+.++ +.+||+|.++
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEV-----KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGS-----SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CeEEEeCCCCCHHHHHHHHcC-----CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 479999999999999998732 234444433 344433333 33 223345555444 4799999997
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCceeEEe
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 674 (697)
..+... .-....++-++-|+|+|||.+++.+.. ....++.+..+..-+++.+.
T Consensus 127 ~~~~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (194)
T 1dus_A 127 PPIRAG-----KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp CCSTTC-----HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEE
T ss_pred CCcccc-----hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEE
Confidence 766431 123457899999999999999997543 33444555444443444444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.4e-06 Score=83.53 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=63.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc---c-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli---g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+. .. .+|+-+|-. ..+..+-++ |+- - +..|..+ ++.-+.+||+|.+..
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~-~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATA-RD---VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWALE 137 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHH-SC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHh-cC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEec
Confidence 48999999999999999762 12 244444443 444444333 542 1 2223322 232137999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. + ...+|-|+-|+|+|||.+++.+
T Consensus 138 ~l~~~~---~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMP---D---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSS---C---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCC---C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 887664 2 3678999999999999999874
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.8e-05 Score=81.17 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=87.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|... .+- .+|+-+|-. ..+.++-++ |+ --+..|+.++++ +.+||+|-++-.
T Consensus 111 ~~vLDlG~GsG~~~~~la~~-~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASE-RPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHH-CTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CEEEEecCCccHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 37999999999999999852 221 144555543 444444332 33 223446666654 478999999754
Q ss_pred cccccC---------CCCC----------CCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccC
Q 005432 619 LSLESG---------HRHR----------CSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 679 (697)
Q Consensus 619 ~~~~~~---------~~~~----------c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 679 (697)
+..... .... -.+..++-++-|+|+|||++++.......++++++.+...|+......+..
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~ 265 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 265 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCC
Confidence 432110 0000 122467788999999999999986666667777777777776443333445
Q ss_pred CCccEEEEEc
Q 005432 680 SDERLLICQK 689 (697)
Q Consensus 680 ~~~~~li~~K 689 (697)
+.+++++++|
T Consensus 266 g~~r~~~~~~ 275 (276)
T 2b3t_A 266 DNERVTLGRY 275 (276)
T ss_dssp SSEEEEEEEC
T ss_pred CCCcEEEEEE
Confidence 5788888875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4.7e-06 Score=81.03 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=80.4
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCccc---ccccccccCCCCCCccccccccCcccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig---~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
+|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-++|+.. +..|..+.++ +.+||+|.|..++.+..
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLAD-----RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTP--DRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCC--SSCEEEEEEESCGGGSC
T ss_pred eEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCC--CCceeEEEEechhhcCC
Confidence 899999999999999987432 44444543 5566666666322 2223333322 37999999998887764
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------------------------HHHHHHHHHHhhcCc
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------------------RLIESARALTTRLKW 669 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------------------------~~~~~~~~~~~~~~W 669 (697)
+ -.+..+|-|+-|+|+|||.+++.+.. ...++++++++.-.+
T Consensus 122 ---~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 122 ---D-DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp ---H-HHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred ---H-HHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 1 22467899999999999999987421 133667778888888
Q ss_pred eeEEee
Q 005432 670 DARVIE 675 (697)
Q Consensus 670 ~~~~~~ 675 (697)
++...+
T Consensus 198 ~v~~~~ 203 (218)
T 3ou2_A 198 SCSVDE 203 (218)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 765554
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.5e-06 Score=84.46 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=65.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc-------ccccccc-c---CCCCCCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG-------VLHDWCE-A---FPTYPRTY 610 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig-------~~~~~~e-~---f~typrty 610 (697)
.+|||+|||.|.++..|.+.+ . +|+-+|-. ..+..+-++ +.-. .-.|+.+ + |+ +.+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~--~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~f 131 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEG--F---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA--GDGF 131 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTT--C---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC--TTCE
T ss_pred CEEEEecCCCCHHHHHHHHCC--C---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc--CCCe
Confidence 579999999999999999742 2 56666654 566555443 1110 1122221 1 33 3799
Q ss_pred cccccc-CccccccC-CCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 611 DLVHAE-GLLSLESG-HRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 611 Dl~H~~-~~~~~~~~-~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
|+|+|. .++.+... ..+.-....+|-|+-|+|+|||++++..
T Consensus 132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999998 67766540 0012335679999999999999999974
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=5.2e-06 Score=83.26 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=66.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-----cccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-----lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.+|.+. .. .+|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|++..++.
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~-~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEK-YG---AHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHH-cC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHHH
Confidence 58999999999999999873 11 244445543 5555555553 2122334433 232248999999998887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.. .-....+|-|+-|+|||||++++.+
T Consensus 132 ~~~----~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 132 ALS----LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcC----hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 762 1234578999999999999999974
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=82.72 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEee
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSF 336 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~ 336 (697)
....+.+.+.+...++ .+|||+|||+|.++..++++.. ...|+++|.++.|++.|+++. ..+.+.++
T Consensus 12 pvLl~e~l~~L~~~~g--------~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~ 82 (301)
T 1m6y_A 12 PVMVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV 82 (301)
T ss_dssp CTTHHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEC
Confidence 3345556666654443 7999999999999999998732 467999999999999998753 23444444
Q ss_pred cccCC
Q 005432 337 ASKQL 341 (697)
Q Consensus 337 da~~L 341 (697)
+...+
T Consensus 83 d~~~l 87 (301)
T 1m6y_A 83 SYREA 87 (301)
T ss_dssp CGGGH
T ss_pred CHHHH
Confidence 44443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.7e-05 Score=76.48 Aligned_cols=138 Identities=9% Similarity=0.005 Sum_probs=83.3
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---cccc-ccccccCC-CCCCccccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFP-TYPRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~-~~~~e~f~-typrtyDl~H~~~ 617 (697)
+|||+|||.|.++.+|.+.-.+- -+|+-+|-. ..+..+-++ |+ +-++ .|. +.++ ..+.+||+|-++.
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEcC
Confidence 79999999999999988630011 144555543 444444333 43 2222 232 2233 3347999999876
Q ss_pred ccccccCCCCCC------CcchhhhhhcccccCCcEEEEEc------CHHHHHHHHHHHhhcC---ceeEEeeeccCC--
Q 005432 618 LLSLESGHRHRC------STLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLK---WDARVIEIESNS-- 680 (697)
Q Consensus 618 ~~~~~~~~~~~c------~~~~~l~E~dRiLRP~G~~i~~d------~~~~~~~~~~~~~~~~---W~~~~~~~e~~~-- 680 (697)
.+-... +.. ....++-++-|+|+|||++++.. .....+.+....+.+. |++.....-+..
T Consensus 102 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~ 178 (197)
T 3eey_A 102 GYLPSG---DHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANC 178 (197)
T ss_dssp SBCTTS---CTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSC
T ss_pred CcccCc---ccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccC
Confidence 551111 111 12358999999999999999874 1234566666666665 887776655442
Q ss_pred CccEEEEEccc
Q 005432 681 DERLLICQKPF 691 (697)
Q Consensus 681 ~~~~li~~K~~ 691 (697)
..-++|.+|.+
T Consensus 179 pp~~~~~~~~~ 189 (197)
T 3eey_A 179 PPILVCIEKIS 189 (197)
T ss_dssp CCEEEEEEECC
T ss_pred CCeEEEEEEcc
Confidence 35677777754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8.3e-06 Score=81.69 Aligned_cols=129 Identities=16% Similarity=0.297 Sum_probs=76.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCC-CCCCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFP-TYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~-typrtyDl~H~ 615 (697)
-.+|||+|||.|.++.+|.+. .+ ...|+-+|-. ..+..+-+ .|+ |- +..|..+..+ ..+.+||+|.+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~-~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASI-SD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTT-CT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 468999999999999999862 12 1234444433 33333322 343 11 2334444444 44589999987
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-----------------HHHHHHHHHH----HhhcCceeEEe
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----------------ARLIESARAL----TTRLKWDARVI 674 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----------------~~~~~~~~~~----~~~~~W~~~~~ 674 (697)
+.-.. ....++-++-|+|||||++|+.+- ......++++ ...-+|+....
T Consensus 149 ~~~~~---------~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 219 (232)
T 3ntv_A 149 DAAKA---------QSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL 219 (232)
T ss_dssp ETTSS---------SHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred cCcHH---------HHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 54333 244688899999999999999321 1123334433 33445665554
Q ss_pred eeccCCCccEEEEEcc
Q 005432 675 EIESNSDERLLICQKP 690 (697)
Q Consensus 675 ~~e~~~~~~~li~~K~ 690 (697)
.. .+.+.|++|+
T Consensus 220 p~----~dG~~i~~k~ 231 (232)
T 3ntv_A 220 NI----DDGLAISIKG 231 (232)
T ss_dssp CS----TTCEEEEEEC
T ss_pred Ec----CCceEEEEEC
Confidence 21 3678888874
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=4e-05 Score=80.62 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHh----ccCcc----cccccccccCCCCCCccccc
Q 005432 542 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFV----GVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~----~RGli----g~~~~~~e~f~typrtyDl~ 613 (697)
++....+|+|+|||.|.++.+|++....+- ++-.|-+..+..+- +.|+- =+-+|..+++| ..||+|
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v 239 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGY 239 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCe---EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEE
Confidence 345678999999999999999986321221 22223333333332 23442 22345445544 489999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------------HHHHHHHHHHhhcCcee
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------RLIESARALTTRLKWDA 671 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------------~~~~~~~~~~~~~~W~~ 671 (697)
.+..++..|.. -....+|-++=|+|+|||+++|.|.. ...++++++++.--++.
T Consensus 240 ~~~~vlh~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 240 VLSAVLHDWDD----LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp EEESCGGGSCH----HHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred EEehhhccCCH----HHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 99999988762 12346899999999999999996531 11355666777767766
Q ss_pred EEeeeccCCCccEEEEEc
Q 005432 672 RVIEIESNSDERLLICQK 689 (697)
Q Consensus 672 ~~~~~e~~~~~~~li~~K 689 (697)
...... ++ ..++.++|
T Consensus 316 ~~~~~~-~~-~~vie~r~ 331 (332)
T 3i53_A 316 RAAHPI-SY-VSIVEMTA 331 (332)
T ss_dssp EEEEEC-SS-SEEEEEEE
T ss_pred EEEEEC-CC-cEEEEEee
Confidence 544322 22 56666665
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.1e-06 Score=81.89 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------CcccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Glig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ .+--+..|. +.++.-+.+||+|++..++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGY-----RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTC-----EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CEEEEeCCcCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 5899999999999999987322 44444443 445544443 121222333 2344223799999998887
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... +...+|-|+-|+|+|||++++.
T Consensus 115 ~~~~------~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP------DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT------THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC------CHHHHHHHHHHHCCCCcEEEEE
Confidence 7653 3457899999999999999985
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.75 E-value=7e-06 Score=84.13 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccc-cccccccCC-CCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGV-LHDWCEAFP-TYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~-~~~~~e~f~-typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|.+.+. .|+-+|-. ..+..+-++ |+ +-+ ..|.. .++ ..+.+||+|.|.
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH-----QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ-DVASHLETPVDLILFH 143 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG-GTGGGCSSCEEEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH-HhhhhcCCCceEEEEC
Confidence 4799999999999999987422 34444443 444444433 44 212 22333 333 334899999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.++.+.. ....+|-|+-|+|+|||++++.+
T Consensus 144 ~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 144 AVLEWVA------DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp SCGGGCS------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhhccc------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9887764 23579999999999999999964
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=84.21 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=65.7
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCcc----cccccccccCCCCCCcccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~~ 616 (697)
..+.|||+|||.|.++.+|++. .|-. .++-.|-+..+..+-+ .|+- =+-+|..+.-.++|.+||+|.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQY-NKEV--EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHH-STTC--EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHh-CCCC--EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 4689999999999999999863 2211 2333333333443333 3432 22334333211256889999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.++..|.. -....+|-++-|+|+|||.++|.|
T Consensus 256 ~vlh~~~~----~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSE----EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCH----HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCH----HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99987752 123468899999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=79.53 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=79.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc------cc-ccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl------ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|||+|||.|.++.+|++.. . -+|+-+|-. ..+..+-++.- +- +..|. +.++.-+.+||+|.+..
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~-~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL-F---REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT-C---SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhc-C---CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcc
Confidence 4589999999999999998631 1 134444433 33443333321 11 12232 23343246899999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---------------HHHHHHHHHHhhcCceeEEeeec
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLKWDARVIEIE 677 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~~e 677 (697)
++.+.. + -.+..+|-|+-|+|+|||++++.+.. ...++++++++...++.......
T Consensus 155 ~l~~~~---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLT---D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCC---H-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 887654 1 12347899999999999999996531 13678888888888887665433
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.6e-05 Score=75.51 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=75.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc--------cccccccccCCCCCCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--------GVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli--------g~~~~~~e~f~typrtyDl~ 613 (697)
.+|||+|||.|.|+.+|.+.. +. .+|+-+|-. ..+..+-++ |+- =+..|. +..+.-+.+||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDS-FF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCT-TC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CEEEEeCCCCCHHHHHHHhhC-CC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 589999999999999998632 21 133444433 444444333 221 111222 1122212689999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHH----------------------HHHHH----HHHhhc
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARL----------------------IESAR----ALTTRL 667 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~----------------------~~~~~----~~~~~~ 667 (697)
.|..++.... .-.+..+|-++-|+|+|||.+++.+.... -++++ .+++.-
T Consensus 107 ~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (217)
T 3jwh_A 107 TVIEVIEHLD----LSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERF 182 (217)
T ss_dssp EEESCGGGCC----HHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHS
T ss_pred eeHHHHHcCC----HHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHc
Confidence 9999887664 12345789999999999998888654321 23333 777777
Q ss_pred CceeEEee
Q 005432 668 KWDARVIE 675 (697)
Q Consensus 668 ~W~~~~~~ 675 (697)
.+++....
T Consensus 183 Gf~v~~~~ 190 (217)
T 3jwh_A 183 AYNVQFQP 190 (217)
T ss_dssp SEEEEECC
T ss_pred CceEEEEe
Confidence 78776653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=74.12 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCC-CCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQL-PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~L-Pfpd~sFDlV 351 (697)
.+++||=||.|.|..+..++++. ...+|+.+|+++..++.+++.- ..+.+...|+... .-..++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 56899999999999999998873 4567999999999999887531 3455666665443 3456789999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.-.. -...+. ...+++.+++.|+|||.++.....+
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 97532 211111 1368999999999999999875433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.8e-05 Score=79.91 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecc
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da 338 (697)
...+.+.+.+...+ ..+|||||||+|.++. +. ++ ....++++|+++.|++.++++.. ++.+..+|+
T Consensus 8 ~i~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~ 76 (252)
T 1qyr_A 8 FVIDSIVSAINPQK--------GQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp HHHHHHHHHHCCCT--------TCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred HHHHHHHHhcCCCC--------cCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECch
Confidence 34455666555433 3789999999999999 65 33 22238999999999999987642 467788888
Q ss_pred cCCCCCCC-----CccEEEeccc
Q 005432 339 KQLPYPSL-----SFDMLHCARC 356 (697)
Q Consensus 339 ~~LPfpd~-----sFDlV~~~~~ 356 (697)
..+++++. ..|.|+++.-
T Consensus 77 ~~~~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 77 MTFNFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEEECC
T ss_pred hhCCHHHhhcccCCceEEEECCC
Confidence 88876532 3467776644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=85.82 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-----------------------------------------ceeEEEEecCCHHHHH
Q 005432 284 VRTILDIGCGYGSFGAHLFSKEL-----------------------------------------LTMCIANYEASGSQVQ 322 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~-----------------------------------------~~~sV~gvD~S~~ml~ 322 (697)
...|||.+||+|.++..++..+. ....++|+|+++.+++
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 47899999999999877765310 1146999999999998
Q ss_pred HHHHc----CCC--cEEEeecccCC--CCCCCCccEEEecccc-ccccc--cHHHH---HHHHHHhccCCeEEEEEeCCC
Q 005432 323 LTLER----GLP--AMIGSFASKQL--PYPSLSFDMLHCARCG-VDWDQ--KDGIL---LLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 323 ~A~er----gl~--~~~~~~da~~L--Pfpd~sFDlV~~~~~l-lh~~~--d~~~~---L~El~RvLKPGG~Lvis~p~~ 388 (697)
.|++. |+. +.+.+.|+..+ |..+++||+|+++--. ..+.. +...+ |.++.+.+.|||.+++.++..
T Consensus 271 ~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 271 RARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH
Confidence 88754 554 56788888877 4444589999998431 11111 22333 444555566899999887654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=77.36 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=61.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--CcccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||.|.++..| . .. +|+-+|-. ..+..+-++ ++--+..|. +.++.-+.+||+|.+..++.+..
T Consensus 38 ~~vLdiG~G~G~~~~~l-~--~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL-P--YP----QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC-C--CS----EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTCS
T ss_pred CeEEEECCCCCHhHHhC-C--CC----eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhcC
Confidence 48999999999999988 3 20 34444443 444445444 221122222 22332237999999988877653
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
....+|-|+-|+|+|||.+++.+
T Consensus 110 ------~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ------DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 35679999999999999999974
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.5e-05 Score=81.33 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH---cCCCcEEEeecccCCCCCCCCccEEEecccccc-
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD- 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e---rgl~~~~~~~da~~LPfpd~sFDlV~~~~~llh- 359 (697)
..+|||+|||+|.++.+++++. ...++.++|++..+...+.. .+.++.....+++-..++.+.+|+|+|-.+ .+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA-pns 168 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG-ESS 168 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC-CCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc-cCC
Confidence 3689999999999999988653 35678899997653221111 111222222222223456789999999865 44
Q ss_pred ---ccccHH--HHHHHHHHhccCC--eEEEEEeCCC
Q 005432 360 ---WDQKDG--ILLLEVDRVLKPG--GYFVWTSPLT 388 (697)
Q Consensus 360 ---~~~d~~--~~L~El~RvLKPG--G~Lvis~p~~ 388 (697)
..+... .+|.-+.++|+|| |.|++-.+.+
T Consensus 169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 112211 3566678899999 9999988753
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.4e-05 Score=77.33 Aligned_cols=133 Identities=9% Similarity=0.075 Sum_probs=78.3
Q ss_pred eeEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHhcc----Ccc----cccccccccCCCCCC--ccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPR--TYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~~R----Gli----g~~~~~~e~f~typr--tyDl~ 613 (697)
-++|||+|||.|.++.+|.+. .+ - -.|+-+|-. ..+..+-++ |+- =+..|..+.++..+. +||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~-~~~~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARE-LPAD--GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTT-SCTT--CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHh-CCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 468999999999999999863 11 0 123334432 444444333 542 123444444444444 89999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH------------HHHHHHHH----HHhhcCceeEEeeec
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARA----LTTRLKWDARVIEIE 677 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~~e 677 (697)
.++.-... ...++-++-|+|||||++|+.+-. .....+++ +...-+|+......-
T Consensus 141 ~~d~~~~~---------~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (248)
T 3tfw_A 141 FIDADKPN---------NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV 211 (248)
T ss_dssp EECSCGGG---------HHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred EECCchHH---------HHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC
Confidence 98653322 235788889999999999985431 22233333 444456766654211
Q ss_pred c-CCCccEEEEEcc
Q 005432 678 S-NSDERLLICQKP 690 (697)
Q Consensus 678 ~-~~~~~~li~~K~ 690 (697)
. ...+.+.|++|+
T Consensus 212 g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 GTKGWDGFTLAWVN 225 (248)
T ss_dssp STTCSEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 1 224788888875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=83.33 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=72.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCC--------------ceeEEEEecCCHHHHHHHHH----cCCCcEE--EeecccCCC-C
Q 005432 285 RTILDIGCGYGSFGAHLFSKEL--------------LTMCIANYEASGSQVQLTLE----RGLPAMI--GSFASKQLP-Y 343 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~--------------~~~sV~gvD~S~~ml~~A~e----rgl~~~~--~~~da~~LP-f 343 (697)
.+|||.+||+|.+...+++.-. ....++|+|+++.+++.|+. +++...+ .++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 3899999999999877654200 13579999999999998875 3554444 555654444 5
Q ss_pred CCCCccEEEecccccc--ccc--------------------------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 344 PSLSFDMLHCARCGVD--WDQ--------------------------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 344 pd~sFDlV~~~~~llh--~~~--------------------------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++..||+|+++--... |.. ..-.++..+.+.|||||++++..|.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 5679999999744221 110 0125889999999999999998874
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.68 E-value=5.2e-05 Score=73.74 Aligned_cols=116 Identities=17% Similarity=0.076 Sum_probs=75.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--c-cccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--V-GVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--i-g~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|.+..... +|+-+|-. ..+..+-++ |+ + -+..|..+.++.. .+||+|-++..
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~~ 117 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL-PDPDRVFIGGS 117 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS-CCCSEEEESCC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC-CCCCEEEECCC
Confidence 589999999999999998742111 23334433 444444332 43 1 1223333443332 57999988655
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCceeEEee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
+. .+..++-++-|+|+|||.+++.. ..+..+++.++.+...|+.....
T Consensus 118 ~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 166 (204)
T 3e05_A 118 GG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEVAC 166 (204)
T ss_dssp TT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEEEE
T ss_pred Cc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeEEE
Confidence 43 34479999999999999999984 44677888888888888655543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.8e-05 Score=78.04 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=75.8
Q ss_pred eeEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCC----Cccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP----RTYD 611 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typ----rtyD 611 (697)
-.+|||+|||.|.++.+|.+. .+ - ..|+-+|-. ..+..+-+ .|+-. +..|..+.++.++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~-~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARG-LSSG--GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTT-CCSS--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHh-CCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 358999999999999999873 11 1 133444432 33433322 25422 2223333333222 5699
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH------------HHHHHHHH----HHhhcCceeEEee
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARA----LTTRLKWDARVIE 675 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~----~~~~~~W~~~~~~ 675 (697)
+|.++.....+ ..++-++-|+|||||++++.+.. .....+++ +...=+|+.....
T Consensus 136 ~v~~d~~~~~~---------~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 206 (223)
T 3duw_A 136 FIFIDADKQNN---------PAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQ 206 (223)
T ss_dssp EEEECSCGGGH---------HHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EEEEcCCcHHH---------HHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 99986554333 36888899999999999985331 12233333 3334457666654
Q ss_pred e-ccCCCccEEEEEc
Q 005432 676 I-ESNSDERLLICQK 689 (697)
Q Consensus 676 ~-e~~~~~~~li~~K 689 (697)
+ ...+.+.+.|+.|
T Consensus 207 ~~~~~~~dG~~~~~~ 221 (223)
T 3duw_A 207 TVGSKGYDGFIMAVV 221 (223)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred ccCCCCCCeeEEEEE
Confidence 4 1222467787775
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=78.51 Aligned_cols=95 Identities=26% Similarity=0.307 Sum_probs=63.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccccccccccCCCCCCccccccccCccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++.. .-+..|. +.++.-+.+||+|-+...+.++.
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~~- 128 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYV- 128 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHC-
T ss_pred CeEEEeCCCcCHHHHHHHHcCC-----eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHCCCCCCCEEEEEEcchhhhcc-
Confidence 4799999999999999987322 44444543 45555555543 1111122 22332237999999987665553
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. +...+|-|+-|+|+|||.+++..
T Consensus 129 --~--~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 129 --E--NKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp --S--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --c--cHHHHHHHHHHHcCCCeEEEEEe
Confidence 1 26689999999999999999864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.7e-05 Score=74.70 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=77.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-cc-----cccccc-ccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWC-EAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig-----~~~~~~-e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|+|+..|++. ..- .|+-+|-. +.|..+..+.- +. -+...+ +.++. .-||.+-++-+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~--g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQN--GAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CEEEEEccCCCHHHHHHHhc--CCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 47999999999999999873 211 34445543 56655544321 11 111112 33332 01344444444
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc-------------------CH---HHHHHHHHHHhhcCceeEEeee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-------------------TA---RLIESARALTTRLKWDARVIEI 676 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-------------------~~---~~~~~~~~~~~~~~W~~~~~~~ 676 (697)
|+.. ..+|-|+-|+|+|||++++-- .. ..++++.++++...|++...+.
T Consensus 113 ~~~l---------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 113 FISL---------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp SSCG---------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhH---------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence 4433 469999999999999999741 11 2466788888888898776654
Q ss_pred cc-----CCCccEEEEEc
Q 005432 677 ES-----NSDERLLICQK 689 (697)
Q Consensus 677 e~-----~~~~~~li~~K 689 (697)
.. ++-+-++.++|
T Consensus 184 ~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 184 SPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp CSSCBTTTBCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHhh
Confidence 32 22355666666
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.5e-05 Score=78.78 Aligned_cols=98 Identities=11% Similarity=0.182 Sum_probs=59.8
Q ss_pred eEEEecccCchhhhhh----hhccCCCeEEEEeecCCCC-CchhhHhcc-----Cccccccccc----ccCC-----CC-
Q 005432 547 RNVLDMNAHFGGFNSA----LLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWC----EAFP-----TY- 606 (697)
Q Consensus 547 RnvmDm~~g~g~Faaa----l~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~~~~~~----e~f~-----ty- 606 (697)
..|||+|||.|.++.. |......+- ..++-+|.. .-|..+-+| |+-.+-..|. +.++ .+
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 4799999999987643 332111232 233444443 444444433 4322211111 1222 02
Q ss_pred CCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 607 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 607 prtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.+||+|+|..++.++. +....|-||-|+|||||++++.
T Consensus 133 ~~~fD~V~~~~~l~~~~------d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK------DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGCS------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC------CHHHHHHHHHHHcCCCcEEEEE
Confidence 38999999999988765 3557899999999999999985
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.5e-05 Score=82.40 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=60.7
Q ss_pred eeEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc-----Ccccc----cccccccCCCCC------C
Q 005432 546 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----GFVGV----LHDWCEAFPTYP------R 608 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~----~~~~~e~f~typ------r 608 (697)
-.+|||+|||.|.++..|.+. +.. -+|+-+|-. ..+..+-++ |...- ..|.. .++.-. .
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPF---EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDKQ 112 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCC---SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTSS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccCC
Confidence 468999999999999999831 011 134444443 455555443 22111 12222 222112 6
Q ss_pred ccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 609 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+||+|+|..++... ....+|-|+-|+|||||++++
T Consensus 113 ~fD~V~~~~~l~~~-------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF-------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS-------CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh-------CHHHHHHHHHHhcCCCcEEEE
Confidence 89999998877643 456899999999999999998
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.66 E-value=4.6e-05 Score=75.64 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=54.1
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchhhHhcc-Cccccccccccc--CCCCCCccccccccCccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~--f~typrtyDl~H~~~~~~~~ 622 (697)
+|||+|||.|.++..|.+.- ..|.-+-+.|.--...+..+-.+ ++.-+..|-.++ +..++.+||+|.|+- .
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~--~-- 135 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI--A-- 135 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--C--
T ss_pred EEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--c--
Confidence 79999999999998887521 12333222221000011222222 233334454443 123458999999862 1
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..-....++-|+-|+|||||.+++.
T Consensus 136 ----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 136 ----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp ----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111224588999999999999985
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=77.18 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=63.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----cccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+.+.. +|+-+|-. ..+..+-++. +--+..|..+ ++.-+.+||+|.+..++.+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGAS----YVLGLDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGG-CCCCTTCEEEEEEESCGGG
T ss_pred CEEEEEcCcCCHHHHHHHHCCCC----eEEEEcCCHHHHHHHHHhcccCCceEEEcChhh-ccCCCCCceEEEEeccccc
Confidence 58999999999999999874220 33333433 4444444443 2222233332 3322479999999888776
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. ....+|-++-|+|+|||.+++..
T Consensus 120 ~~------~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE------DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------hHHHHHHHHHHhcCcCcEEEEEe
Confidence 53 35578999999999999999864
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.65 E-value=4.3e-05 Score=76.67 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=78.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCCC---CCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPT---YPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~t---yprtyDl~H~~ 616 (697)
.+|||+|||.|.++..|....... .|+-+|.. ..+.++-+ .|+ |-+++.=.+.++. .+.+||+|.+.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 589999999999888887311111 23444433 33333322 344 3333322233332 35789999985
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC---HHHHHHHHHHHhhcCceeEEeee---ccC-CCccEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT---ARLIESARALTTRLKWDARVIEI---ESN-SDERLLICQK 689 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~---e~~-~~~~~li~~K 689 (697)
.+ ..+..++-++-|+|+|||++++.+. .+.++++.+.++...++...... ... +...+++.+|
T Consensus 149 ~~----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k 218 (240)
T 1xdz_A 149 AV----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRK 218 (240)
T ss_dssp CC----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred cc----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEe
Confidence 52 2355789999999999999998653 45566677777777777644321 111 2345666666
Q ss_pred c
Q 005432 690 P 690 (697)
Q Consensus 690 ~ 690 (697)
.
T Consensus 219 ~ 219 (240)
T 1xdz_A 219 I 219 (240)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=4.5e-05 Score=78.84 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=75.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---cc-ccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
..|||+|||.|+|+.+|...... .|+-+|-. ..+..+-+ .|+-. .+ .|. +.++. +.+||+|.++.
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~----~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~-~~~~~-~~~fD~Vi~~~ 200 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA----KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-RDFPG-ENIADRILMGY 200 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-TTCCC-CSCEEEEEECC
T ss_pred CEEEEecccCCHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH-HHhcc-cCCccEEEECC
Confidence 47999999999999998864333 24444443 34433332 25432 22 222 22332 57999998854
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-------HHHHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-------~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.++ ...++-++-|+|+|||++++.+. .+..+++.+.++...|++...
T Consensus 201 p~~----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 201 VVR----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CSS----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred chh----------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 433 23578889999999999999543 356788899999999998874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.9e-05 Score=79.63 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh--hHhccCcc----cccccccccCCCCCCcccccccc
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP--MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~--~i~~RGli----g~~~~~~e~f~typrtyDl~H~~ 616 (697)
+....+|||+|||.|.++.+|++....+- ++-.|-+..+. .+-+.|+- =+-+|..+++ | +||+|.+.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---p-~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQ---GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV---P-HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEE---EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC---C-CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCE---EEEecCHHHhhcccccccCCCCCeEEEecCCCCCC---C-CCcEEEEe
Confidence 34578999999999999999986322221 22222221111 01112332 2234444444 4 89999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------------------------HHHHHHHHHHhhcCcee
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------------RLIESARALTTRLKWDA 671 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------------------~~~~~~~~~~~~~~W~~ 671 (697)
.++..|.. -....+|-|+-|+|||||.++|.|.. ...++++++++.--++.
T Consensus 255 ~vlh~~~d----~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 255 RILHNWGD----EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp SCGGGSCH----HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred hhccCCCH----HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 99987752 12246899999999999999996521 12456667777777776
Q ss_pred EEeeeccCCCccEEEEEc
Q 005432 672 RVIEIESNSDERLLICQK 689 (697)
Q Consensus 672 ~~~~~e~~~~~~~li~~K 689 (697)
..... .++...++.++|
T Consensus 331 ~~~~~-~~~~~~vie~~p 347 (348)
T 3lst_A 331 DRVVG-TSSVMSIAVGVP 347 (348)
T ss_dssp EEEEE-CSSSCEEEEEEE
T ss_pred EEEEE-CCCCcEEEEEEe
Confidence 55433 233344554443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.2e-05 Score=79.62 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=62.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----CcccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++.+|.+. .+- .+|+-+|-. ..+..+-++ .+--+..|.. .++ ++.+||+|.|..++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEK-YPE--ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYS-KYD-FEEKYDMVVSALSIH 120 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHH-CTT--CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTT-TCC-CCSCEEEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchh-ccC-CCCCceEEEEeCccc
Confidence 68999999999999999874 111 133444433 444444443 1211222322 222 238999999998887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.... -....+|-|+-|+|+|||++++.+
T Consensus 121 ~~~~----~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLED----EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCH----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6641 112248999999999999999975
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=76.48 Aligned_cols=109 Identities=8% Similarity=0.067 Sum_probs=71.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC--cccccccccccCCCC-CCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG--lig~~~~~~e~f~ty-prtyDl~H~~~~~~~~ 622 (697)
..|||+|||.|.++.+|.+.+. .|+-+|-. ..+..+-++. +-=+..|+.+.+|.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA-----RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 4799999999999999987422 45555544 5565565552 222345565555532 4799999984
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 672 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~ 672 (697)
-....+|-|+-|+|||||.++.-......+.+.+......++..
T Consensus 119 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 ------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp ------SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 12346899999999999999944322233455555555555443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=75.49 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=62.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----C--cccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--FVGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----G--lig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+.. + +|+-+|-. ..+..+-++ | +--+..|..+ ++.-+.+||+|.+..++
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYG-F----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTT-C----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCG
T ss_pred CeEEEEeccCCHHHHHHHHcC-C----EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCch
Confidence 579999999999999998742 2 44544543 444443332 1 2222333333 22213799999998874
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
..+. .-....+|-++-|+|+|||.+++.+.
T Consensus 114 ~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 114 VHFE----PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GGCC----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4332 12345789999999999999999754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=79.36 Aligned_cols=98 Identities=16% Similarity=0.107 Sum_probs=62.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----c-c-ccccccc---ccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-V-GVLHDWC---EAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l-i-g~~~~~~---e~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++.+|.+ ... -+|+-++-+ ..+..+-++. . + =+..+|. ..++. .+||.|..+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~--~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D 135 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQE--API--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHTT--SCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEECCCccHHHHHHHH--hCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEe
Confidence 4699999999999999976 222 244555554 5666555432 2 1 1223443 34544 789999876
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
...+.+.. .+.-....++=|+-|+|||||.|++-
T Consensus 136 ~~~~~~~~-~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccch-hhhcchhhhhhhhhheeCCCCEEEEE
Confidence 66554431 01123447888999999999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=9.3e-05 Score=68.54 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=72.2
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCccccccccccc---------CCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~---------f~typrtyDl~H 614 (697)
.+|||+|||.|.++.+|.+. +..|..+-+.| ...+ ..+--+..|..+. ++ +.+||+|.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~--~~~~D~i~ 93 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI-----VGVDFLQGDFRDELVMKALLERVG--DSKVQVVM 93 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC-----TTEEEEESCTTSHHHHHHHHHHHT--TCCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc-----CcEEEEEcccccchhhhhhhccCC--CCceeEEE
Confidence 38999999999999999863 12344444333 1111 1111122233222 33 27899999
Q ss_pred ccCccccccCCCCCCC------cchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEeeecc----CCCcc
Q 005432 615 AEGLLSLESGHRHRCS------TLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIEIES----NSDER 683 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~------~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~----~~~~~ 683 (697)
++..+..... ...-. ...+|-++-|+|+|||.+++... ......+.+.... .|+........ ...+.
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (180)
T 1ej0_A 94 SDMAPNMSGT-PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREV 171 (180)
T ss_dssp ECCCCCCCSC-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEE
T ss_pred ECCCccccCC-CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceE
Confidence 9777653220 00000 14688999999999999999632 1223333333333 36544332221 12477
Q ss_pred EEEEEc
Q 005432 684 LLICQK 689 (697)
Q Consensus 684 ~li~~K 689 (697)
.+||++
T Consensus 172 ~~~~~~ 177 (180)
T 1ej0_A 172 YIVATG 177 (180)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.6e-05 Score=82.98 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=62.6
Q ss_pred eeEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCC-Ccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP-RTYDLVH 614 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typ-rtyDl~H 614 (697)
-.+|||+|||.|.++..|.+. +. .|+-+|-. ..+..+-+ .|+-+ +..|.. .++ +| .+||+|.
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~V~ 190 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGS-----RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTP-FDKGAVTASW 190 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-CCTTCEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCC-CCCCCEeEEE
Confidence 357999999999999999873 22 33444433 44444433 34421 222332 233 33 7999999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+..++... ....+|-|+-|+|||||++++.+
T Consensus 191 ~~~~l~~~-------~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 191 NNESTMYV-------DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EESCGGGS-------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCchhhC-------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 98777654 26689999999999999999853
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.1e-05 Score=75.35 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=62.7
Q ss_pred eEEEecccCchhhhhhhhcc--CCCeEEEEeecCCCC-CchhhHhccC--cccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~--~~~vwvmnv~p~~~~-~~l~~i~~RG--lig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.++.+|.+. ...| +-+|-. ..+..+-++. +--+..|. +.++ -+.+||+|++..++..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v-----~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVI-----TGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSE-----EEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEE-----EEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 47999999999999999863 2223 333332 4455554441 11122232 2344 3579999999888776
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. +...+|-|+-|+|+|||++++..
T Consensus 108 ~~------~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VP------DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ST------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 53 35578999999999999999974
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.58 E-value=2.7e-05 Score=76.77 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=76.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
.+|||+|||.|.++..|.. . +-+|.. ..+..+-++++--+..|. +.++.-+.+||+|.+..++....
T Consensus 49 ~~vLDiG~G~G~~~~~l~~--~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKI--K-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTC--C-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGSS--
T ss_pred CcEEEeCCCCCHHHHHHHH--H-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhcc--
Confidence 4799999999999999976 3 222332 555566666542222332 22332236999999998877653
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEcCH------------------------HHHHHHHHHHhhcCceeEEe
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTA------------------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
....+|-++-|+|+|||++++.+.. ...++++++++...++....
T Consensus 117 ----~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 117 ----DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 2457999999999999999996311 13467788888888876554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=6.9e-05 Score=79.87 Aligned_cols=136 Identities=19% Similarity=0.169 Sum_probs=84.2
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCcc----cccccccccCCCCCCccccccc
Q 005432 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~ 615 (697)
..-.+|+|+|||.|.++.+|.+....+ .++-.|-+..+..+-+ .|+- =+-+|..+++ |..||+|.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---CCCCCEEEE
Confidence 345789999999999999998742122 2222222223332222 3432 2334544444 446999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC--H--H-----------------------HHHHHHHHHhhcC
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--R-----------------------LIESARALTTRLK 668 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~-----------------------~~~~~~~~~~~~~ 668 (697)
..++..+.. . ....+|-++-|+|+|||+++|.|. . + ..++++++++.-.
T Consensus 255 ~~vl~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 330 (374)
T 1qzz_A 255 SFVLLNWSD--E--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAG 330 (374)
T ss_dssp ESCGGGSCH--H--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTT
T ss_pred eccccCCCH--H--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 999887652 1 123689999999999999998765 2 1 2345666777777
Q ss_pred ceeEEeeeccCCCc-----cEEEEEcc
Q 005432 669 WDARVIEIESNSDE-----RLLICQKP 690 (697)
Q Consensus 669 W~~~~~~~e~~~~~-----~~li~~K~ 690 (697)
++......- ++.. .++.++|+
T Consensus 331 f~~~~~~~~-~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 331 LALASERTS-GSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEEEEE-CCSSCSSCEEEEEEEEC
T ss_pred CceEEEEEC-CCCcccCCcEEEEEEEC
Confidence 775544322 2233 78888875
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.57 E-value=4.6e-05 Score=73.61 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=71.5
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cccc-ccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~-~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
+|||+|||.|.++.+|.+. .. +|+-+|-. ..+..+-++ |+ +-++ .|. +.++.-+.+||+|.+. +.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEE--CC
T ss_pred CEEEECCCCCHhHHHHHhC--CC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEE--hh
Confidence 8999999999999999873 22 55555654 455544443 33 1111 222 2233223799999984 32
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC----H-------------HHHHHHHHHHhhcCceeEEe
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----A-------------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----~-------------~~~~~~~~~~~~~~W~~~~~ 674 (697)
++ ..-....+|-++-|+|+|||++++.+. . -..++++++.+ .|++...
T Consensus 104 ~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 104 HL----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CC----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cC----CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 22 112355789999999999999999631 0 22466777776 6776554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.57 E-value=8.8e-05 Score=72.86 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=75.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCC-C-CCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~t-y-prtyDl~H~~ 616 (697)
..|||+|||.|.|+.+|... .|- .+|+-+|-. ..+..+.+ .|+ +- +..|..+ ++. + +.+||+|.+.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~-~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQ-NPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHH-CTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CeEEEEccCcCHHHHHHHHH-CCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 46999999999999998763 211 245555543 44444433 243 11 2233333 331 2 3789999986
Q ss_pred CccccccC---CCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005432 617 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 617 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.... |.. ...+-....+|-++-|+|+|||.+++. |..+..+.+.++.....|+....
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 119 FSDP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp SCCC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 4321 210 001122357899999999999999997 46566777777777767776544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2.5e-05 Score=77.94 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=59.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----c-cc-ccccccc---cCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VG-VLHDWCE---AFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----l-ig-~~~~~~e---~f~typrtyDl~H~~ 616 (697)
..|||+|||.|.++..|.+ ... -+|+-+|.. ..+..+-++. . +- +..|+.+ +|+. .+||+|.++
T Consensus 62 ~~vLDiGcGtG~~~~~l~~--~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~V~~d 135 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQE--API--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHHT--SCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEEeccCCHHHHHHHh--cCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCC--CceEEEEEC
Confidence 4799999999999999975 222 145555554 5555554432 1 11 1223322 4443 799999983
Q ss_pred -CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 -GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 -~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
..+ .... .+.-....++-|+-|+|||||.+++-+
T Consensus 136 ~~~~-~~~~-~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPL-SEET-WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCC-BGGG-TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred Cccc-chhh-hhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 222 1110 011122357899999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.57 E-value=2.5e-05 Score=84.33 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=76.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc---------C-c----cc-ccccccc-------cC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---------G-F----VG-VLHDWCE-------AF 603 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R---------G-l----ig-~~~~~~e-------~f 603 (697)
..|||+|||.|.++..|.+.-.+- -.|+-+|-. ..+..+-++ | + +- +..|..+ +|
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 579999999999998887621011 134444443 555555554 4 1 11 2233332 33
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-----------------------HHHHHH
Q 005432 604 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------------RLIESA 660 (697)
Q Consensus 604 ~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------------~~~~~~ 660 (697)
+ +.+||+|++..++.... + ...+|-|+-|+|||||++++.+-. -..+++
T Consensus 163 ~--~~~fD~V~~~~~l~~~~---d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
T 4fsd_A 163 P--DSSVDIVISNCVCNLST---N---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF 234 (383)
T ss_dssp C--TTCEEEEEEESCGGGCS---C---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred C--CCCEEEEEEccchhcCC---C---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence 3 37999999999887664 2 458999999999999999997411 113677
Q ss_pred HHHHhhcCceeE
Q 005432 661 RALTTRLKWDAR 672 (697)
Q Consensus 661 ~~~~~~~~W~~~ 672 (697)
.+++..-.++..
T Consensus 235 ~~ll~~aGF~~v 246 (383)
T 4fsd_A 235 RRLVAEAGFRDV 246 (383)
T ss_dssp HHHHHHTTCCCE
T ss_pred HHHHHHCCCceE
Confidence 788888777643
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.55 E-value=6.5e-05 Score=87.03 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCchHHHHH---hh-cC--------CceeEEEEecCCHHHHHHHHH---cC--CCcEEEeecccCCCCC--
Q 005432 284 VRTILDIGCGYGSFGAHL---FS-KE--------LLTMCIANYEASGSQVQLTLE---RG--LPAMIGSFASKQLPYP-- 344 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~L---a~-~g--------~~~~sV~gvD~S~~ml~~A~e---rg--l~~~~~~~da~~LPfp-- 344 (697)
...|||||||+|.+.... ++ .+ .....|+++|.++..+..++. .+ -.+.+...+++.+..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 357999999999996432 21 11 134589999999865543332 23 3477788888887663
Q ss_pred ---CCCccEEEeccccccccc--cHHHHHHHHHHhccCCeEEE
Q 005432 345 ---SLSFDMLHCARCGVDWDQ--KDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 345 ---d~sFDlV~~~~~llh~~~--d~~~~L~El~RvLKPGG~Lv 382 (697)
.+..|+|++..... +.. --...|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecccc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence 46899999985422 221 12467888899999999876
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00044 Score=78.54 Aligned_cols=105 Identities=21% Similarity=0.161 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHH----cCC---CcEEEeecccCC--C-CCCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLE----RGL---PAMIGSFASKQL--P-YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g--~~~~sV~gvD~S~~ml~~A~e----rgl---~~~~~~~da~~L--P-fpd~sFDl 350 (697)
...+|||.+||+|.+...++++- .....++|+|+++.+++.|+. +|+ ...+.++|+... | ++...||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999987776541 124579999999999988875 355 235666776555 3 45678999
Q ss_pred EEecccc-cccc------c--------------c-HHHHHHHHHHhcc-CCeEEEEEeCC
Q 005432 351 LHCARCG-VDWD------Q--------------K-DGILLLEVDRVLK-PGGYFVWTSPL 387 (697)
Q Consensus 351 V~~~~~l-lh~~------~--------------d-~~~~L~El~RvLK-PGG~Lvis~p~ 387 (697)
|+++--. ..|. . + .-.++..+.+.|+ |||++++..|.
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 9997321 1110 0 0 1247899999999 99999998874
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.54 E-value=7.9e-05 Score=71.86 Aligned_cols=134 Identities=12% Similarity=0.175 Sum_probs=69.5
Q ss_pred eEEEecccCchhhhhhhhccC----CCeEEEEeecCCCCCchhhHhccCcccccccccccC------C------------
Q 005432 547 RNVLDMNAHFGGFNSALLEKG----KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------P------------ 604 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~----~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f------~------------ 604 (697)
.+|||+|||.|+++.+|.+.- ..|..+-+.|.... .++.-+-.|..+.- +
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~--------~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPI--------PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCC--------TTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCC--------CCceEEEccccchhhhhhccccccccccchhhH
Confidence 579999999999999998631 23444444442111 11111112222210 0
Q ss_pred -----CCC-CccccccccCccccccC--CCCC---CCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCce-e
Q 005432 605 -----TYP-RTYDLVHAEGLLSLESG--HRHR---CSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWD-A 671 (697)
Q Consensus 605 -----typ-rtyDl~H~~~~~~~~~~--~~~~---c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~-~ 671 (697)
.++ .+||+|.++..+..... .... -....+|-++-|+|+|||.+++..- .+...++....... |. +
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~v 174 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQLV 174 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-HheE
Confidence 023 68999998765432100 0000 0012377889999999999998521 11233344433333 43 3
Q ss_pred EEeeecc---CCCccEEEEEc
Q 005432 672 RVIEIES---NSDERLLICQK 689 (697)
Q Consensus 672 ~~~~~e~---~~~~~~li~~K 689 (697)
....... .+.|..+||++
T Consensus 175 ~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 175 HTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EECCCC-----CCEEEEEEEE
T ss_pred EEECCcccCCcCceEEEEEec
Confidence 3332221 23588889876
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=1.3e-05 Score=82.85 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=61.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----C------cccccccccccCCCCCCcccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G------FVGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----G------lig~~~~~~e~f~typrtyDl~H~~ 616 (697)
.|||+|||.|.++.+|.+.+. +|+-+|-. ..+..+-++ | +-=+..|..+ ++. +.+||+|.|+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-----EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-FAL-DKRFGTVVIS 157 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-----CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB-CCC-SCCEEEEEEC
T ss_pred cEEEEeccCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc-CCc-CCCcCEEEEC
Confidence 799999999999999987432 34444443 444444433 2 1112233332 443 7899999875
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
...-.+. +.-....+|-|+-|+|||||.+++.
T Consensus 158 ~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 158 SGSINEL---DEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHHHTTS---CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccC---CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3322222 2233567899999999999999996
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.53 E-value=2.3e-05 Score=76.65 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=57.3
Q ss_pred eEEEecccCchhhhhhhhccCC-CeEEEEeecCCCC-CchhhHh----ccCcc---cc-cccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMIL----DRGFV---GV-LHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~-~~l~~i~----~RGli---g~-~~~~~e~f~typrtyDl~H~~ 616 (697)
++|||+|||.|.++.+|.+.-. .. .|+-+|-. ..+..+- ..|+- -+ ..|..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 5899999999999999986311 11 22333332 2333222 23442 12 2244444455567 9999875
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.- ......++-++-|+|||||.+++.+
T Consensus 134 ~~---------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD---------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT---------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC---------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 32 2334578889999999999999854
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0001 Score=79.17 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHh----ccCc----ccccccccccCCCCCCcccccc
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF----VGVLHDWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~----~RGl----ig~~~~~~e~f~typrtyDl~H 614 (697)
+....+|+|+|||.|.++.+|++....+- ++-.|-+..+..+- +.|+ -=+-+|..+++| ..||+|.
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEEE
Confidence 34568999999999999999987421221 22222233333222 2343 223345545544 4799999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH------------------------HHHHHHHHHHhhcCce
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------------------RLIESARALTTRLKWD 670 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------------------~~~~~~~~~~~~~~W~ 670 (697)
+..++..|.. -....+|-++-|+|+|||+++|.|.. ...++.+++.+.-.|+
T Consensus 274 ~~~vlh~~~d----~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 274 IKHVLHDWDD----DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EESCGGGSCH----HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred hhhhhccCCH----HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 9999987752 11235899999999999999995421 1145667777777787
Q ss_pred eEEeeeccCCCccEEEEEc
Q 005432 671 ARVIEIESNSDERLLICQK 689 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K 689 (697)
.........+...++.++|
T Consensus 350 ~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 350 VERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEEECSSSSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEe
Confidence 6655321234456777765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.51 E-value=5e-05 Score=77.01 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=76.5
Q ss_pred eeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCcc---cc-cccccccCCCC-----CCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---GV-LHDWCEAFPTY-----PRTYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGli---g~-~~~~~e~f~ty-----prtyDl~ 613 (697)
-++|||+|||.|.++.+|.+. +..|..+-+-|.-....-..+-..|+- -+ ..|-.+.++.+ +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 468999999999999998862 223444444333222122223333542 12 22333333333 4789999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH------------HHHHHHHHHHhhc----CceeEEeeec
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALTTRL----KWDARVIEIE 677 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~~~~~~----~W~~~~~~~e 677 (697)
.++.....+ ..++-++-|+|||||++++.|-. ...+.++++.+.+ ++++.+...
T Consensus 141 ~~d~~~~~~---------~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 210 (242)
T 3r3h_A 141 FIDADKTNY---------LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI- 210 (242)
T ss_dssp EEESCGGGH---------HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS-
T ss_pred EEcCChHHh---------HHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc-
Confidence 886543333 25777889999999999985321 2223344444433 455554422
Q ss_pred cCCCccEEEEEccccccc
Q 005432 678 SNSDERLLICQKPFFKRQ 695 (697)
Q Consensus 678 ~~~~~~~li~~K~~~~~~ 695 (697)
.+.++|++|+-=+||
T Consensus 211 ---~dG~~~~~k~~~~~~ 225 (242)
T 3r3h_A 211 ---ADGMFLVQPIAENLY 225 (242)
T ss_dssp ---SSCEEEEEEC-----
T ss_pred ---cCceEEEEEcCCCcc
Confidence 377899988765555
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.50 E-value=3.4e-05 Score=75.96 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHhc----cCccc---c-cccccccCCCCC-----Cccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILD----RGFVG---V-LHDWCEAFPTYP-----RTYD 611 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~~----RGlig---~-~~~~~e~f~typ-----rtyD 611 (697)
.+|||+|||.|.++.+|.+. .+ - -.|+-+|-. ..+..+-+ .|+-. + ..|..+.++..+ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~-~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLA-LPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTT-CCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHh-CCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 48999999999999999863 11 1 123333332 33333322 24321 1 223334333333 6899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH------------HHHHHHHHH----HhhcCceeEEee
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARAL----TTRLKWDARVIE 675 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~------------~~~~~~~~~----~~~~~W~~~~~~ 675 (697)
+|.++..... ...++-++=|+|||||++++.|-. .....++++ ...-+|+.....
T Consensus 143 ~v~~~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 213 (225)
T 3tr6_A 143 LIYIDADKAN---------TDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIP 213 (225)
T ss_dssp EEEECSCGGG---------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEECCCHHH---------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9997554332 335788888999999999986432 122233333 333456655542
Q ss_pred eccCCCccEEEEEcc
Q 005432 676 IESNSDERLLICQKP 690 (697)
Q Consensus 676 ~e~~~~~~~li~~K~ 690 (697)
. .+.++|++|+
T Consensus 214 ~----~dG~~~~~k~ 224 (225)
T 3tr6_A 214 I----GDGLTLARKK 224 (225)
T ss_dssp S----TTCEEEEEEC
T ss_pred c----CCccEEEEEC
Confidence 1 3678888874
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=68.86 Aligned_cols=110 Identities=8% Similarity=0.058 Sum_probs=76.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---ccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++.+|.+... +|+-+|-. ..+..+-++ |+ --+..|+.++++. .+||+|.++..
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK-----FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS-----EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC
T ss_pred CEEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc
Confidence 4899999999999999986222 33333432 333333332 33 2233455555554 68999999766
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCceeEEee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
..+..++-++-|+ |||.+++.+ ..+...++.+..+...|++...+
T Consensus 110 ----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 110 ----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp ----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEE
Confidence 2344788888888 999999986 66778888888888889887764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00096 Score=72.24 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
++.+|||+||.+|.++..+++++ ..|+++|+.+ |-.... ....+.+...|+..+..+.+.||+|+|-.+ .
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~-l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-----~ 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP-MAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMV-----E 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC-CCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCS-----S
T ss_pred CCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh-cChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCC-----C
Confidence 56899999999999999999986 4689999763 222222 234567778888887777789999999765 3
Q ss_pred cHHHHHHHHHHhccCC
Q 005432 363 KDGILLLEVDRVLKPG 378 (697)
Q Consensus 363 d~~~~L~El~RvLKPG 378 (697)
++...+.-+.+.|..|
T Consensus 281 ~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 281 KPAKVAALMAQWLVNG 296 (375)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred ChHHhHHHHHHHHhcc
Confidence 4555555555555554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00035 Score=82.21 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHH--HH--------cCCCc-EEEeecccCC-CCCCCCc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLT--LE--------RGLPA-MIGSFASKQL-PYPSLSF 348 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g--~~~~sV~gvD~S~~ml~~A--~e--------rgl~~-~~~~~da~~L-Pfpd~sF 348 (697)
...+|||.|||+|.++..++++. .....++|+|+++.+++.| +. .++.. .+...+.... +.....|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 35799999999999999988763 1235689999999999888 32 12222 3333333332 2345789
Q ss_pred cEEEecccccc-ccc--------------------------c-HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 349 DMLHCARCGVD-WDQ--------------------------K-DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 349 DlV~~~~~llh-~~~--------------------------d-~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+|+++--... +.. + ...++..+.+.|+|||++++..|.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 99999855211 110 0 123678899999999999999884
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.48 E-value=8e-05 Score=75.89 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=45.6
Q ss_pred CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCcee
Q 005432 608 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDA 671 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~ 671 (697)
.+||+|-|+.++..... +.-.+..+|-+|-|+|||||+||+++.. -..++++++...--.++
T Consensus 155 ~~fD~V~~~~~l~~i~~--~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECACC--SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhcC--CHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 58999999998876421 2234457899999999999999998411 13456777776666655
Q ss_pred EEe
Q 005432 672 RVI 674 (697)
Q Consensus 672 ~~~ 674 (697)
...
T Consensus 233 ~~~ 235 (263)
T 2a14_A 233 EQL 235 (263)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=3e-05 Score=79.16 Aligned_cols=99 Identities=18% Similarity=0.079 Sum_probs=62.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---cccc-ccccccCCC-CCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPT-YPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig~~-~~~~e~f~t-yprtyDl~H~~ 616 (697)
.+|||+|||.|.++..|... +. -+|+-+|-. ..+..+-++ |+ +-+. .|..+ ++. -+.+||+|.|.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERA--GI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQ 140 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHH--TC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHHC--CC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEEC
Confidence 48999999999999998763 21 134444433 334433332 32 2222 22222 222 24799999998
Q ss_pred Cccccc-cCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 617 GLLSLE-SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 617 ~~~~~~-~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.++... . +.-....+|-|+-|+|+|||++++...
T Consensus 141 ~~l~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 141 FSFHYAFS---TSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp SCGGGGGS---SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhhhcC---CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 877541 1 223455799999999999999998753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=2.9e-05 Score=79.85 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=60.0
Q ss_pred EEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCCCC-CccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~typ-rtyDl~H~~~~~~ 620 (697)
+|||+|||.|.++.+|.+.- .+= .+|+=+|-. .-|..+-+ .|+..-+.-.|.-+..+| ..||+|-+..++.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~--~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSS--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCC--CEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 69999999999998887520 110 133444433 44444433 244222222222222233 4699999877765
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
... .-....+|-||-|+|||||.+|+.|
T Consensus 151 ~~~----~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 151 FLE----PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecC----chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 442 1122358999999999999999975
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.45 E-value=6e-05 Score=77.52 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=55.0
Q ss_pred CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC----------------HHHHHHHHHHHhhcCcee
Q 005432 608 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------------ARLIESARALTTRLKWDA 671 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------------~~~~~~~~~~~~~~~W~~ 671 (697)
.+||+|-|..+|..... +--....+|-|+-|+|||||++++.+. .-..+++++++..-.++.
T Consensus 173 ~~fD~V~~~~~l~~~~~--~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 173 LPADALVSAFCLEAVSP--DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp SSEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEEEehhhhhhhcC--CHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 67999999988876431 112456899999999999999998521 113567778777777776
Q ss_pred EEeeecc----------CCCccEEEEEcccccc
Q 005432 672 RVIEIES----------NSDERLLICQKPFFKR 694 (697)
Q Consensus 672 ~~~~~e~----------~~~~~~li~~K~~~~~ 694 (697)
....... ..+.-+.|+.|+=|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T 2g72_A 251 RDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGLE 283 (289)
T ss_dssp EEEEEEECCGGGCCTTBCCCEEEEEEEEECC--
T ss_pred EEeeEeeccccccccccCcceEEEEEEeccccc
Confidence 5443221 1123356677766654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=76.06 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=59.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH-------HHHc----C-C--CcEEEeecccC-CCCCCCCcc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL-------TLER----G-L--PAMIGSFASKQ-LPYPSLSFD 349 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~-------A~er----g-l--~~~~~~~da~~-LPfpd~sFD 349 (697)
.+|||+|||+|..+..++.++. .|+++|.++.+.+. +.+. + + ++.+..+|+.. ++...++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 7899999999999999999853 59999999976433 3211 1 1 35567777655 443234799
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCe
Q 005432 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGG 379 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG 379 (697)
+|++... ++.. ....++++..++|++.+
T Consensus 167 vV~lDP~-y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPM-FPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCC-CCCC-CC-----HHHHHHHHHS
T ss_pred EEEEcCC-CCCc-ccchHHHHHHHHHHHhh
Confidence 9999866 4433 22357777788888755
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.44 E-value=7.5e-05 Score=82.02 Aligned_cols=68 Identities=16% Similarity=0.039 Sum_probs=54.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CC-CcEEEeecccCC-CC-CCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GL-PAMIGSFASKQL-PY-PSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl-~~~~~~~da~~L-Pf-pd~sFDlV~~~ 354 (697)
+.+|||+|||+|..+..|++.+ ..|+++|.++.+++.|+++ ++ ++.+.++|+... +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4799999999999999998874 4799999999999988754 54 466777887663 32 34689999985
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.44 E-value=3.4e-05 Score=76.30 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=75.4
Q ss_pred eeEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCC-----Ccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP-----RTY 610 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typ-----rty 610 (697)
-++|||+|||.|.++..|.+.- ... .|+-+|-. ..+..+-+ .|+-. +..|..+.++..+ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 4689999999999999988620 111 33334433 33433332 24421 2334444455555 689
Q ss_pred ccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-----HHHHHHHHHHHhhcCceeEEeee--ccC-CCc
Q 005432 611 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEI--ESN-SDE 682 (697)
Q Consensus 611 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~--e~~-~~~ 682 (697)
|+|.++.....+. ....++-++ |+|||||.+++.|- .+.++.++ ..=.++...... +.. ..+
T Consensus 136 D~V~~d~~~~~~~------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~d 205 (221)
T 3u81_A 136 DMVFLDHWKDRYL------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVD 205 (221)
T ss_dssp SEEEECSCGGGHH------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEE
T ss_pred EEEEEcCCcccch------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCC
Confidence 9999876555443 112356667 99999999998653 34444443 333566655432 111 135
Q ss_pred cEEEEEc
Q 005432 683 RLLICQK 689 (697)
Q Consensus 683 ~~li~~K 689 (697)
.+.|+.+
T Consensus 206 G~~~~~~ 212 (221)
T 3u81_A 206 GLEKAIY 212 (221)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 6777665
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=72.92 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=78.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCC-CCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTY-PRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~ty-prtyDl~H~~ 616 (697)
.+|||+|||.|.++..|.+.. +. +|+-+|-. ..+..+-+ .|+ +- +..|..+..+.+ +.+||+|-++
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~-~~---~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRT-KA---KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTC-CC---EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CEEEEcCCchhHHHHHHHHhc-CC---cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 479999999999999998632 21 45555543 33333322 243 22 223444433333 3799999997
Q ss_pred CccccccC--------------CCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEE
Q 005432 617 GLLSLESG--------------HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 673 (697)
Q Consensus 617 ~~~~~~~~--------------~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 673 (697)
-.|..... ....+.+..++-++-|+|+|||.+++--..+...++..++....|+...
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 65532200 0012456689999999999999999976677778888888888887654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=5.9e-05 Score=76.85 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=74.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cccc-ccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~-~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++.++..... +|+-+|-. ..+..+-++ |+ +-++ .|+.+.++ +.+||+|.++.++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~-----~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYA 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCH
T ss_pred CEEEEecCCCcHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcH
Confidence 4799999999999998886322 44444443 444444432 43 2222 23444343 3689999986554
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. +..++-++-|+|+|||++++.+- ....+++.++.+...++....
T Consensus 195 ~~---------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 195 EL---------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp HH---------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred HH---------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 33 23688999999999999999742 344677777777777876554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.43 E-value=4e-05 Score=76.67 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=60.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cc-ccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig-~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-++ |+ +- +..|..+ ++ .+.+||+|.|....
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFST 115 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSG
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCc
Confidence 5899999999999999987422 45555554 444444332 32 11 2233333 33 35789999875332
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..+. +.-....+|-++-|+|+|||.+|+.
T Consensus 116 ~~~~---~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYF---DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGS---CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2222 1123557899999999999999974
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=3.6e-05 Score=80.24 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=62.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC-----------c--cc-ccccccc-----cCCC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----------F--VG-VLHDWCE-----AFPT 605 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG-----------l--ig-~~~~~~e-----~f~t 605 (697)
-.+|||+|||.|.++..|.+ .+. -+|+-+|-. ..+..+-+|- . +- +..|..+ +|+.
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~--~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKK--GRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHH--TTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCEEEEECCCCcHHHHHHHh--cCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 35799999999999999986 222 134445543 4444443331 1 11 2222221 2332
Q ss_pred CCCccccccccCccccc-cCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 606 YPRTYDLVHAEGLLSLE-SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 606 yprtyDl~H~~~~~~~~-~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
-+.+||+|-|..++... . +.-....+|-|+-|+|+|||++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~---~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFE---SYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCCEEEEEEETCGGGGGG---SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEecchhhccC---CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 23589999998776443 2 222345789999999999999999743
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=72.33 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=72.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCC-C-CCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~t-y-prtyDl~H~~ 616 (697)
..|||+|||.|.|+.+|... .|- .+|+-+|-. .-+..+.+ .|+ +- +..|..+ ++. + +.+||.|++.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~-~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQ-NPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHH-CTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE
T ss_pred ceEEEEecCCCHHHHHHHHH-CCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE
Confidence 35999999999999999863 221 245555544 44444433 354 22 2233332 221 2 3789998763
Q ss_pred CccccccC---CCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeE
Q 005432 617 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDAR 672 (697)
Q Consensus 617 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~ 672 (697)
.. ..|.. ...+-....+|-|+-|+|+|||.+++. |.....+.+.++.....|+..
T Consensus 116 ~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 FS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp SC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 22 11210 002223457899999999999999986 566666676666666566544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.42 E-value=3.2e-05 Score=74.87 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=59.3
Q ss_pred eEEEecccCchhhhh-hhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cc-ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNS-ALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faa-al~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.+++ .+.. ... +|+-+|.. ..+..+-++ |. +- +..|.. .++.-+.+||+|.|..+
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~--~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVE--DGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHH--TTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSC
T ss_pred CEEEEECCCCCHHHHHHHHh--CCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcCh
Confidence 589999999999854 4433 222 44444443 334333332 21 11 122322 23322379999999887
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+.. .-....+|-|+-|+|+|||++++.+
T Consensus 99 l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 99 IFHMR----KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGGSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhCC----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 76542 1235578999999999999999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=77.12 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=63.1
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc----Cccc----ccccccccCCCCCCcccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R----Glig----~~~~~~e~f~typrtyDl~H~~ 616 (697)
...+|||+|||.|.++.+|.+....+ .++-.|-+..+..+-++ |+-+ +-+|..+. .+|. +|+|.+.
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v~~~ 263 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAVLFC 263 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEEEEe
Confidence 45799999999999999998742122 22222333344443332 5422 23444332 2233 4999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.++..+. + -....+|-++-|+|+|||.++|-|
T Consensus 264 ~vlh~~~---d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 264 RILYSAN---E-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SCGGGSC---H-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred chhccCC---H-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9988775 1 224568999999999999998865
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00098 Score=66.42 Aligned_cols=92 Identities=10% Similarity=-0.046 Sum_probs=64.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC----CcEEEeecccC---------------
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFASKQ--------------- 340 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl----~~~~~~~da~~--------------- 340 (697)
.++||||||| ..|..+++. . ...|+.+|.+++..+.|++ .++ ++.+..+++..
T Consensus 31 a~~VLEiGtG--ySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCEEEEECch--HHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 4799999985 677777764 1 4679999999999988764 244 34555555432
Q ss_pred CC--------C-CCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 341 LP--------Y-PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 341 LP--------f-pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
++ . ..++||+|+.-.- .....+..+.+.|+|||++++..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEeC
Confidence 22 2 2368999997642 22356667779999999997743
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=75.52 Aligned_cols=136 Identities=22% Similarity=0.261 Sum_probs=84.3
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCc----ccccccccccCCCCCCcccccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGl----ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
.-.+|||+|||.|.++.+|.+....+-+ +-.|-+..+..+-+ .|+ -=+-+|+.+++ |..||+|.+.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---CCCccEEEEc
Confidence 3568999999999999999874223322 22232333433332 333 22344555544 4569999999
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH--------H------------------HHHHHHHHHhhcCce
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------R------------------LIESARALTTRLKWD 670 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------~------------------~~~~~~~~~~~~~W~ 670 (697)
.++..+.. . ....+|-++-|+|+|||++++.|.. . ..++++++++.-.++
T Consensus 257 ~vl~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (360)
T 1tw3_A 257 FVLLNWPD--H--DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV 332 (360)
T ss_dssp SCGGGSCH--H--HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred ccccCCCH--H--HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence 99877651 1 1236899999999999999987533 0 134566677777777
Q ss_pred eEEeeeccCC----CccEEEEEcc
Q 005432 671 ARVIEIESNS----DERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~----~~~~li~~K~ 690 (697)
......-.+. ...+++++|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 333 VEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEEeCCCCcccCccEEEEEEeC
Confidence 6544322221 1567888775
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=6.7e-05 Score=80.20 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=60.5
Q ss_pred eEEEecccCchhhhhhhhccCC-CeEEEEeecCCCCCchhh----HhccCc---ccccccccccCCCCC-CccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYP-RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~~~l~~----i~~RGl---ig~~~~~~e~f~typ-rtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+.+. .|.. +|....+.. +-+.|+ |-+++.=.+.++ +| .+||+|.+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~g-----vD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIG-----IECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEW 141 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEE-----EECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECC
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEE-----ECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEcc
Confidence 5799999999999999987421 2332 232222322 333455 233332223332 34 8999999976
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+..... ..-.+..++-+++|+|+|||.+|.
T Consensus 142 ~~~~l~---~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 142 MGYCLF---YESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CBBTBT---BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccc---CchhHHHHHHHHHHhCCCCCEEcc
Confidence 544443 334566789999999999999974
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=71.30 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=71.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccCcccccccccccC------CCCC----Ccccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------PTYP----RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f------~typ----rtyDl~H~~ 616 (697)
.+|||+|||.|+|+..|.+.+..|+-+-+.|..... |+--+-.|..+.- ..++ .+||+|-++
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~--------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd 98 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIA--------GVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSD 98 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCT--------TCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCC--------CeEEEEccccCHHHHHHHHHHhhcccCCcceEEecC
Confidence 589999999999999998743345555555532211 2222223332210 0011 379999886
Q ss_pred Ccccccc---C--CCCCCCcchhhhhhcccccCCcEEEEEc--CHHHHHHHHHHHhhcCce-eEEeeec---cCCCccEE
Q 005432 617 GLLSLES---G--HRHRCSTLDIFTEIDRILRPEGWVIIRD--TARLIESARALTTRLKWD-ARVIEIE---SNSDERLL 685 (697)
Q Consensus 617 ~~~~~~~---~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d--~~~~~~~~~~~~~~~~W~-~~~~~~e---~~~~~~~l 685 (697)
....... . .........+|-++-|+|||||.|++.- ... ...+....+.. ++ +.+.... +.+.|-.+
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 99 AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 5321100 0 0000112357778899999999999752 222 23444444443 33 3333222 23468888
Q ss_pred EEEc
Q 005432 686 ICQK 689 (697)
Q Consensus 686 i~~K 689 (697)
||++
T Consensus 177 v~~~ 180 (191)
T 3dou_A 177 MFFG 180 (191)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8875
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=78.58 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=60.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCc---ccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..|.+.+. . .|+-+|....+.. +-+.|+ |-+++.=.+.++ +|..||+|.+..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~-~---~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA-R---KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC-S---EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CEEEEeccCcCHHHHHHHhcCC-C---EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 5799999999999998887422 1 2333333333332 333454 333332233333 35899999996543
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.... ..-.+..++-+++|+|+|||.+|+.
T Consensus 140 ~~l~---~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 140 YFLL---RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TTBT---TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hccc---chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3332 2234557899999999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.38 E-value=6.3e-05 Score=79.03 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=61.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc------------cccccccc--c----cC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF------------VGVLHDWC--E----AF 603 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl------------ig~~~~~~--e----~f 603 (697)
..|||+|||.|+....++. .... +|+=+|-. .-|..+-+| |+ ++..+.-+ + +|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~--~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFY--GEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CEEEETTCTTTTTHHHHHH--TTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CeEEEEecCCcHhHHHHHh--cCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4799999999997777664 2222 45555654 555555544 21 11111111 2 23
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 604 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 604 ~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+ +.+||+|-|..++...- +.-....+|-||-|+|||||+||+...
T Consensus 126 ~--~~~FD~V~~~~~lhy~~---~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 Y--FGKFNIIDWQFAIHYSF---HPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp C--SSCEEEEEEESCGGGTC---STTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--CCCeeEEEECchHHHhC---CHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 37999999876653211 111346899999999999999999753
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=74.97 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-------CCc----eeEEEEecCCH---HHHHHH-----------HHc----------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK-------ELL----TMCIANYEASG---SQVQLT-----------LER---------- 327 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~-------g~~----~~sV~gvD~S~---~ml~~A-----------~er---------- 327 (697)
...+|||||+|+|..+..+++. +.. ...++++|..+ +++..+ ++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999988776543 211 36788888765 555433 211
Q ss_pred ---------CCCcEEEeecccC-CCCCC----CCccEEEecccccccccc--HHHHHHHHHHhccCCeEEEE
Q 005432 328 ---------GLPAMIGSFASKQ-LPYPS----LSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 328 ---------gl~~~~~~~da~~-LPfpd----~sFDlV~~~~~llh~~~d--~~~~L~El~RvLKPGG~Lvi 383 (697)
...+.+..+|+.. ++.-+ ..||+|+.-...-.-.++ ...+|.++.++|||||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0123355566554 44322 279999975321111122 25799999999999999885
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00053 Score=71.92 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---HcCCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~---ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+..+|||+||++|.++..++++. ...++.++|+...+..... ..+.++........-..+..+.||+|+|-.+ .+
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-Pn 158 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-ES 158 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-CC
Confidence 45899999999999999999762 3557889998753211000 0011222222122223355678999999755 44
Q ss_pred ccccH-------HHHHHHHHHhccCC-eEEEEEeCC
Q 005432 360 WDQKD-------GILLLEVDRVLKPG-GYFVWTSPL 387 (697)
Q Consensus 360 ~~~d~-------~~~L~El~RvLKPG-G~Lvis~p~ 387 (697)
.... ..+|.-+.++|+|| |.|++-.+-
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 2221 13566678899999 999998775
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=76.79 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=83.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc----C----cccccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----G----FVGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R----G----lig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|+|+|||.|.++.+|.+. .|-. .++-.|-+..+..+-++ | +--+-+|..++ +|..||+|.+..+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQA-EPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHH-CTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHH-CCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCEEEEchh
Confidence 89999999999999999863 2211 23333333444433332 2 22234455553 4678999999999
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------------H------------HHHHHHHHHhhcCceeEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------R------------LIESARALTTRLKWDARV 673 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------------~------------~~~~~~~~~~~~~W~~~~ 673 (697)
+..|.. . ....+|-++-|+|+|||+++|.|.. + ..++++++++.-.++...
T Consensus 243 l~~~~~--~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 243 IGDLDE--A--ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp GGGCCH--H--HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccCCCH--H--HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 987752 2 2247899999999999999997421 0 134556666666676544
Q ss_pred eeeccCCCccEEEEEc
Q 005432 674 IEIESNSDERLLICQK 689 (697)
Q Consensus 674 ~~~e~~~~~~~li~~K 689 (697)
... .++...+++++|
T Consensus 319 ~~~-~~~~~~~i~~~~ 333 (334)
T 2ip2_A 319 IVD-LPMETRMIVAAR 333 (334)
T ss_dssp EEE-ETTTEEEEEEEE
T ss_pred EEE-CCCCCEEEEEEe
Confidence 322 223456777776
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.35 E-value=5.2e-05 Score=80.23 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=85.0
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCcc----cccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.++|+|+|||.|.++.+|++....+-+ +-.|-+..+..+-+ .|+- -+-+|..+.-+..|..||+|.+.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTG---QIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEE---EEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeE---EEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 789999999999999999863212222 22233333333322 3442 233344333212467899999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC--------H-------------------HHHHHHHHHHhhcCce
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------A-------------------RLIESARALTTRLKWD 670 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--------~-------------------~~~~~~~~~~~~~~W~ 670 (697)
++..|.. -....+|-++-|+|+|||.++|.|. . ...++++++++.-.++
T Consensus 257 vlh~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (352)
T 3mcz_A 257 CLHYFDA----REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332 (352)
T ss_dssp CGGGSCH----HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCE
T ss_pred ccccCCH----HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCc
Confidence 9987752 1234789999999999999999641 0 0134456666666676
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005432 671 ARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K~ 690 (697)
..... .+...+++++|+
T Consensus 333 ~~~~~---~g~~~l~~a~kp 349 (352)
T 3mcz_A 333 VGERS---IGRYTLLIGQRS 349 (352)
T ss_dssp EEEEE---ETTEEEEEEECC
T ss_pred eeeec---cCceEEEEEecC
Confidence 65431 124678889986
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00014 Score=73.36 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=65.9
Q ss_pred eEEEecccCchhhhhhhhcc------CCCeEEEEeecCCCCCchhhHhccCccccccccccc--CCCCCC-ccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEK------GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA--FPTYPR-TYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~------~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~--f~typr-tyDl~H~~~ 617 (697)
.+|||+|||.|..++.|.+. +..|..+-+.|.-.. ... -+...+-=+..|..+. ++..+. +||+|+++.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~-~a~-~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-IPA-SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-CCG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHH-HHh-ccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 48999999999999998763 233444443332211 110 0111121123344432 232223 699999754
Q ss_pred ccccccCCCCCCCcchhhhhhcc-cccCCcEEEEEcCHHH-----HHHHHHHHhhc--Ccee
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDR-ILRPEGWVIIRDTARL-----IESARALTTRL--KWDA 671 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dR-iLRP~G~~i~~d~~~~-----~~~~~~~~~~~--~W~~ 671 (697)
. + -....+|-|+-| +|||||++++.|.... -+.+.++.+.. .++.
T Consensus 161 ~----~-----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 161 A----H-----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp S----C-----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred c----h-----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 3 1 144578999998 9999999999764211 13566666666 4554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=2.8e-05 Score=77.54 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|+++.+|.+.. ..|+-+|-. ..+..+-+ .|+ +- +..|..+.. -+.+||+|.++.
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~ 152 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG-----MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSP 152 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT-----CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECC
T ss_pred CEEEECccccCHHHHHHHHcC-----CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECC
Confidence 479999999999999999743 234444433 33333322 243 11 223333322 236899999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.|.... .....+.|+-|+|+|||++|+..
T Consensus 153 ~~~~~~------~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PWGGPD------YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCSSGG------GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcCCcc------hhhhHHHHHHhhcCCcceeHHHH
Confidence 777644 11236779999999999988754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7.5e-05 Score=78.71 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=74.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCC-CCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTY-PRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~ty-prtyDl~H~~~~~~ 620 (697)
..|||+|||.|+++|.++..... -.|+-+|-. ..+..+-++ |+ .-+.-.|.-...+ +.+||+|..+..-
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~g---a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYG---MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTC---CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CEEEEECCCccHHHHHHHHHccC---CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 58999999999998776542112 234444443 455444433 65 2222122212222 3899999874431
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcCHHHHH----HH-HHHHhhcCceeEEeeeccCC-CccEEEEEcc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE----SA-RALTTRLKWDARVIEIESNS-DERLLICQKP 690 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~----~~-~~~~~~~~W~~~~~~~e~~~-~~~~li~~K~ 690 (697)
-....++-|+-|+|||||.+++++....-. .+ ..+.+ .|+.....+..+. .+.|.+++|.
T Consensus 199 --------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 199 --------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFKC 264 (298)
T ss_dssp --------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEEC
T ss_pred --------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEcc
Confidence 123479999999999999999997532210 00 01222 5776665544443 3567777763
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=5.2e-05 Score=78.69 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 606 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 606 yprtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.+||+|.|..++...+-......+..+|-++-|+|||||++|+..
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 34899999998886332100012345679999999999999999964
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=73.43 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred eEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc----Ccc----cccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFV----GVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Gli----g~~~~~~e~f~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++.+|.+. .... .|+-+|-. ..+..+-++ |+- -+..|..+.|+. .+||+|-++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 47999999999999999873 1011 23333443 444444443 542 245567777664 789999872
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcC
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLK 668 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~ 668 (697)
--....++-++-|+|+|||.+++.. ..+..+++.+.++...
T Consensus 170 -----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 -----------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp -----------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred -----------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1223468999999999999999875 4556666666666655
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00022 Score=74.48 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=83.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCccc----ccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-.+|+|+|||.|.++.+|.+. .|-. .++-.|-+..+..+-+ .|+-+ +-+|..+. .+|..||+|.+..
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQH-NPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLPN 240 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHH-CTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEES
T ss_pred CCEEEEECCCcCHHHHHHHHH-CCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEcc
Confidence 468999999999999999873 2211 2333333323333322 24322 22333331 3455699999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------H-----------------HHHHHHHHHhhcCce
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------R-----------------LIESARALTTRLKWD 670 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------~-----------------~~~~~~~~~~~~~W~ 670 (697)
++..+.. -....+|-++-|+|+|||++++.|.. . ..++++++++.-.++
T Consensus 241 ~l~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~ 316 (335)
T 2r3s_A 241 FLHHFDV----ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS 316 (335)
T ss_dssp CGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred hhccCCH----HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence 9887741 12347899999999999999985421 0 145667777777777
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005432 671 ARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 671 ~~~~~~e~~~~~~~li~~K~ 690 (697)
...... ..+...++++++|
T Consensus 317 ~~~~~~-~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 317 HSQLHS-LPTTQQQVIVAYK 335 (335)
T ss_dssp EEEEEC-CTTSSSEEEEEEC
T ss_pred eeeEEE-CCCCceeEEEecC
Confidence 554422 2223567777664
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=74.50 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=80.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCC---CCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFP---TYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~---typrtyDl~H~~ 616 (697)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++-+ -|+ |-+++.--+.++ .++.+||+|-+.
T Consensus 82 ~~vLDiG~G~G~~~i~la~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIV-RPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHH-CTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 57999999999988877642 121 133444433 33333322 355 444444444444 345799999874
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEc---CHHHHHHHHHHHhhcCceeEEeeec---cCCCc-cEEEEEc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---TARLIESARALTTRLKWDARVIEIE---SNSDE-RLLICQK 689 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---~~~~~~~~~~~~~~~~W~~~~~~~e---~~~~~-~~li~~K 689 (697)
.+ ..+..++-++-|+|+|||.+++-. ..+.+.+++..++.+.|+......- ....+ .+++.+|
T Consensus 159 a~----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 159 AV----------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp SS----------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred Cc----------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 32 234578888999999999988743 3566777777777788876543221 12233 4555566
Q ss_pred c
Q 005432 690 P 690 (697)
Q Consensus 690 ~ 690 (697)
.
T Consensus 229 ~ 229 (249)
T 3g89_A 229 T 229 (249)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00028 Score=69.30 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=71.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---c-ccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
..|||+|||.|.++.+|..... .|+-+|-. ..+..+-+ .|+- - +..|..+.++.. ..||+|-+..
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~ 130 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGG 130 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECS
T ss_pred CEEEEecCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECC
Confidence 5799999999999999987422 33444433 44444333 2442 1 223333333332 3699987643
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc-CHHHHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.+ ... ++-++-|+|||||.+++.. ..+...++.++.+...+++...
T Consensus 131 ~~----------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 GG----------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CC----------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred cc----------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 21 334 8899999999999999975 4566777777777777766544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=71.46 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=69.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCccc---cccccccc----CCCCCCccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG---VLHDWCEA----FPTYPRTYDLV 613 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig---~~~~~~e~----f~typrtyDl~ 613 (697)
-..|||+|||.|.++.+|.+..... +|+-+|-. ..+..+ -+.|+-. +.+|-.+. |+ +.+||+|
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~--~~~~d~v 109 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMV 109 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC--TTCEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC--CCChheE
Confidence 3579999999999999998632232 34444443 434333 2345421 22332222 44 3899999
Q ss_pred cccCccccccCC---CCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhc-Cce
Q 005432 614 HAEGLLSLESGH---RHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWD 670 (697)
Q Consensus 614 H~~~~~~~~~~~---~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~ 670 (697)
++.... .|... ..|-.-..++-|+-|+|||||++++. |.....+.+.++.... .|+
T Consensus 110 ~~~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~ 170 (218)
T 3dxy_A 110 QLFFPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK 170 (218)
T ss_dssp EEESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE
T ss_pred EEeCCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 975221 12200 01112235889999999999999986 5555566666655432 344
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.28 E-value=8.4e-05 Score=72.88 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=73.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-Cc--------------ccccccccccCCCCC---
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF--------------VGVLHDWCEAFPTYP--- 607 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-Gl--------------ig~~~~~~e~f~typ--- 607 (697)
..|||+|||.|.++..|.+.+. .|+=+|-. .-|..+.+| ++ ..-..-.|.-+...|
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~-----~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC-----eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 3699999999999999987432 45555544 455555544 11 011111222232333
Q ss_pred -CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEE-E-EcCH----------HHHHHHHHHHhhcCceeEEe
Q 005432 608 -RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVI-I-RDTA----------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 608 -rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i-~-~d~~----------~~~~~~~~~~~~~~W~~~~~ 674 (697)
.+||+|-+..+|.+.. ......++-||-|+|||||.++ + -+-. -..++++.+... .|++...
T Consensus 99 ~~~fD~v~~~~~l~~l~----~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCEEEEEECcchhhCC----HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 6899999877776553 1233457899999999999833 2 2210 125677777777 7887655
Q ss_pred ee
Q 005432 675 EI 676 (697)
Q Consensus 675 ~~ 676 (697)
+.
T Consensus 174 ~~ 175 (203)
T 1pjz_A 174 GG 175 (203)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0003 Score=74.13 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=54.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhH-hc-cCc--ccccccccccCCCCCCccccccccCcccc-
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI-LD-RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSL- 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i-~~-RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~- 621 (697)
..|||+|||.|+|+..|.+. ..|.-+-+....++..+..+ .+ .|. +-+... ...+..-+.+||+|.|+..++.
T Consensus 84 ~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccC
Confidence 58999999999999999874 34544433111111111100 01 111 111111 0111111368999999876641
Q ss_pred -ccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 622 -ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 622 -~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.. +.-....+|-++-|+|||||.|++.
T Consensus 162 ~~~~--d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 162 NPTV--EAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SHHH--HHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchh--hHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 100 0000114688899999999999985
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.27 E-value=5.9e-05 Score=75.23 Aligned_cols=97 Identities=9% Similarity=-0.081 Sum_probs=61.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC----ccccccccccc-CC-CCC--CccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEA-FP-TYP--RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG----lig~~~~~~e~-f~-typ--rtyDl~H~~~ 617 (697)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++- +--+..|..+. ++ .|+ ..||+|.+..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-----RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-----CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 4699999999999999987432 44555543 4454444432 11112222220 00 111 2399999988
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.... .-....+|-|+-|+|+|||++++.+
T Consensus 133 ~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 133 GFHHIP----VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp SSTTSC----GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhhcCC----HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 887653 2345689999999999999988764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00029 Score=72.72 Aligned_cols=136 Identities=10% Similarity=0.056 Sum_probs=72.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCC--C-CchhhHhcc--Ccccc--cccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--T-NHLPMILDR--GFVGV--LHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~--~-~~l~~i~~R--Glig~--~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
..|||+|||.|+|+..|.+. ..|.-+-+.|.-. + +.+. .-.. ++.-+ -.|-.+ ++ +.+||+|-|+..+
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~-~~~~~~~v~~~~~~~D~~~-l~--~~~fD~V~sd~~~ 150 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRI-TESYGWNIVKFKSRVDIHT-LP--VERTDVIMCDVGE 150 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCC-CCBTTGGGEEEECSCCTTT-SC--CCCCSEEEECCCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhh-hhccCCCeEEEecccCHhH-CC--CCCCcEEEEeCcc
Confidence 58999999999999999874 5677766666311 1 1110 0001 11111 122222 44 5899999997552
Q ss_pred ccccCCCC-CCCcchhhhhhcccccCCc--EEEEE----cCHHHHHHHHHHHhhcCceeEEeeec--cCCCccEEEEEc
Q 005432 620 SLESGHRH-RCSTLDIFTEIDRILRPEG--WVIIR----DTARLIESARALTTRLKWDARVIEIE--SNSDERLLICQK 689 (697)
Q Consensus 620 ~~~~~~~~-~c~~~~~l~E~dRiLRP~G--~~i~~----d~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~li~~K 689 (697)
..-....+ .-.+ .+|-++.|+|+||| .|++. +..++++.++.+..... .+.+...- +.+.|-.+||.+
T Consensus 151 ~~~~~~~d~~~~l-~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~ 227 (265)
T 2oxt_A 151 SSPKWSVESERTI-KILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA 227 (265)
T ss_dssp CCSCHHHHHHHHH-HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred cCCccchhHHHHH-HHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence 11000000 0001 26778999999999 99985 33434455554444322 33333311 233566666643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.23 E-value=7.9e-05 Score=74.64 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=72.5
Q ss_pred eEEEecccCchhhhhhhhccCC-CeEEEEeecCCCC-CchhhHhc----cCccc----ccccccccCCCCC-----Cccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYP-----RTYD 611 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~-~~l~~i~~----RGlig----~~~~~~e~f~typ-----rtyD 611 (697)
++|||+|||.|.++.+|.+.-. .. .|+-+|-. ..+.++-+ .|+-. +..|..+.++.+| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 5899999999999999986311 11 22333322 33333322 24421 1223222222222 6799
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHHHHH----hhcCceeEEee
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALT----TRLKWDARVIE 675 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~~----~~~~W~~~~~~ 675 (697)
+|.++..... ...++-++-|+|||||++++.+. ......++++. ..-+++.....
T Consensus 151 ~V~~d~~~~~---------~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 221 (232)
T 3cbg_A 151 LIFIDADKRN---------YPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP 221 (232)
T ss_dssp EEEECSCGGG---------HHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred EEEECCCHHH---------HHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 9988654322 33678888999999999999532 12333444443 33456655543
Q ss_pred eccCCCccEEEEEcc
Q 005432 676 IESNSDERLLICQKP 690 (697)
Q Consensus 676 ~e~~~~~~~li~~K~ 690 (697)
+ .+.+.+++|.
T Consensus 222 ~----~dG~~~~~~~ 232 (232)
T 3cbg_A 222 L----GDGMTLALKK 232 (232)
T ss_dssp S----BTCEEEEEEC
T ss_pred c----CCeEEEEEeC
Confidence 2 2568888774
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.22 E-value=9.8e-05 Score=73.86 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=76.0
Q ss_pred EEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhH----hccCcc-c---c-cccccccCCCC-CCccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMI----LDRGFV-G---V-LHDWCEAFPTY-PRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i----~~RGli-g---~-~~~~~e~f~ty-prtyDl~H~ 615 (697)
+|||+|||.|.++.+|.+. ...- .|+-+|-. ..+.++ -+.|+- . + ..|-.+..+.+ +.+||+|.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 8999999999999988752 0011 22333332 223222 122332 1 1 12222333344 478999987
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHHHHHhhcCceeEEeeeccCCCcc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALTTRLKWDARVIEIESNSDER 683 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 683 (697)
+..... ...++-++-|+|||||++++.|- ......++++.+.++++-.+.-+----.+.
T Consensus 136 d~~~~~---------~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG 206 (221)
T 3dr5_A 136 QVSPMD---------LKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAG 206 (221)
T ss_dssp CCCTTT---------HHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTC
T ss_pred cCcHHH---------HHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccch
Confidence 643332 23578888999999999998422 123345666666666652221111111478
Q ss_pred EEEEEccccc
Q 005432 684 LLICQKPFFK 693 (697)
Q Consensus 684 ~li~~K~~~~ 693 (697)
++|+.|+.-.
T Consensus 207 l~~~~~~~~~ 216 (221)
T 3dr5_A 207 LTVVTKALEH 216 (221)
T ss_dssp EEEEEECCCC
T ss_pred HHHHHHHHHh
Confidence 9999998643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00015 Score=74.23 Aligned_cols=120 Identities=14% Similarity=0.064 Sum_probs=74.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-Cc-------------------ccccccccccCCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF-------------------VGVLHDWCEAFPT 605 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-Gl-------------------ig~~~~~~e~f~t 605 (697)
..|||+|||.|.++..|.+.+. +|+-+|-. .-+..+.++ ++ -.-+.-.|--+..
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 3799999999999999997433 45555654 444444332 11 0111112222222
Q ss_pred CC----CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc----C--------HHHHHHHHHHHhhcCc
Q 005432 606 YP----RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----T--------ARLIESARALTTRLKW 669 (697)
Q Consensus 606 yp----rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----~--------~~~~~~~~~~~~~~~W 669 (697)
.| .+||+|-+..+|.... ......++-||-|+|||||.+++-. . .-.-++++.+... .|
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~----~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN----PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TE
T ss_pred CCcccCCCEEEEEEhhhhhhCC----HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-Ce
Confidence 22 6899999888877653 1334568999999999999996421 0 0124677777766 48
Q ss_pred eeEEeee
Q 005432 670 DARVIEI 676 (697)
Q Consensus 670 ~~~~~~~ 676 (697)
++.....
T Consensus 220 ~v~~~~~ 226 (252)
T 2gb4_A 220 SMQCLEE 226 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8766543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00026 Score=70.42 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=71.4
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhcc-Cccccccccccc--CCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~--f~typrtyDl~H~~~~~~ 620 (697)
..|||+|||.|.|+..|.+. ...|..+-+.|..-...+..+-.+ ++--+..|..+. ++..+.+||+|.++.. .
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-~ 157 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-Q 157 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-C
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-C
Confidence 47999999999999999863 123333322221000112222222 232233444432 2323478999998433 1
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcCHH----------HHHHHHHHHhhcCceeEE-eeeccCC-CccEEEEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR----------LIESARALTTRLKWDARV-IEIESNS-DERLLICQ 688 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~----------~~~~~~~~~~~~~W~~~~-~~~e~~~-~~~~li~~ 688 (697)
.. ....++.++-|+|+|||.+++.-... ...+..+++....|+... .+.+.-+ ..-+++++
T Consensus 158 ~~-------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 158 PD-------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp TT-------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred cc-------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEE
Confidence 11 11235678999999999999953221 122223555666677654 3333222 23445555
Q ss_pred c
Q 005432 689 K 689 (697)
Q Consensus 689 K 689 (697)
|
T Consensus 231 ~ 231 (233)
T 2ipx_A 231 Y 231 (233)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00047 Score=65.45 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=63.1
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCc-hHHHHHhh-cCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC
Q 005432 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYG-SFGAHLFS-KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL 341 (697)
Q Consensus 264 ~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG-~~a~~La~-~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L 341 (697)
.+.+.+.+..... ...+|||||||.| ..+..|++ .| ..|+++|+++..++ +.+.|..+
T Consensus 22 ~e~LaeYI~~~~~------~~~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~----------~v~dDiF~- 81 (153)
T 2k4m_A 22 WNDLAVYIIRCSG------PGTRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG----------IVRDDITS- 81 (153)
T ss_dssp HHHHHHHHHHHSC------SSSEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT----------EECCCSSS-
T ss_pred HHHHHHHHHhcCC------CCCcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc----------eEEccCCC-
Confidence 4456665543322 3479999999999 59999997 65 45899999987655 45455544
Q ss_pred CCCC--CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 342 PYPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 342 Pfpd--~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|..+ ..||+|.+.+. .++....+.++.+.+ |.-++|...
T Consensus 82 P~~~~Y~~~DLIYsirP----P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 82 PRMEIYRGAALIYSIRP----PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CCHHHHTTEEEEEEESC----CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CcccccCCcCEEEEcCC----CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 3322 37999998876 334445555555544 456666543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00024 Score=75.19 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=59.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHh----ccCc---ccccccccccCCCCC-CccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~----~RGl---ig~~~~~~e~f~typ-rtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..+.+. +. -.|+-+|....+..+- +.|+ |-+++.-.+.++ +| ..||+|.+..+
T Consensus 40 ~~VLDiGcGtG~ls~~la~~--g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKH--GA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHT--CC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred CEEEEecCccHHHHHHHHHC--CC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCc
Confidence 47999999999999888863 21 1233333322233222 2354 223332223333 34 78999999766
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
..... +.-.+..++-+++|+|+|||.++
T Consensus 115 ~~~l~---~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 115 GYFLL---YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTBS---TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcc---cHHHHHHHHHHHHhhcCCCeEEE
Confidence 44433 33445678899999999999998
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.17 E-value=8.1e-05 Score=74.50 Aligned_cols=131 Identities=12% Similarity=0.173 Sum_probs=74.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc---c-cc----------------cccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG---V-LH----------------DWCE 601 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig---~-~~----------------~~~e 601 (697)
.+|||+|||.|.++..|.+.-.+- -+|+-+|-. ..+..+-++ |+-. + .. .|-.
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPED--GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 479999999999999998631000 123333332 333333222 3311 1 11 1323
Q ss_pred cCCCCC-CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHH----HHH
Q 005432 602 AFPTYP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESAR----ALT 664 (697)
Q Consensus 602 ~f~typ-rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~----~~~ 664 (697)
.|+. + .+||+|.++..... ...++-++-|+|||||.+++.+- ......++ .+.
T Consensus 140 ~f~~-~~~~fD~I~~~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (239)
T 2hnk_A 140 DFAF-GPSSIDLFFLDADKEN---------YPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVY 209 (239)
T ss_dssp TTCC-STTCEEEEEECSCGGG---------HHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHH
T ss_pred cccC-CCCCcCEEEEeCCHHH---------HHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHh
Confidence 3332 2 67999988644332 23678899999999999999651 12233333 344
Q ss_pred hhcCceeEEeeeccCCCccEEEEEccccc
Q 005432 665 TRLKWDARVIEIESNSDERLLICQKPFFK 693 (697)
Q Consensus 665 ~~~~W~~~~~~~e~~~~~~~li~~K~~~~ 693 (697)
..-.+++..... .+.+.+++|..-.
T Consensus 210 ~~~~~~~~~~p~----~~g~~~~~~~~~~ 234 (239)
T 2hnk_A 210 NDSLVDVSLVPI----ADGVSLVRKRLEH 234 (239)
T ss_dssp HCTTEEEEEECS----TTCEEEEEECCCC
T ss_pred hCCCeEEEEEEc----CCceEeeeehhhc
Confidence 445566665532 2568889887643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00035 Score=68.99 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=70.3
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHh----cc-Cccccccccccc--CCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMIL----DR-GFVGVLHDWCEA--FPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~----~R-Glig~~~~~~e~--f~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++.+|.+. ...|..+-+.| ..+..+. ++ ++--+..|..+. +...+.+||+|-++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 37999999999999998853 12343333322 1111111 11 222223344331 22335689999975
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC---------HH-H-HHHHHHHHhhcCceeEEe-eeccCC-Ccc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT---------AR-L-IESARALTTRLKWDARVI-EIESNS-DER 683 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~---------~~-~-~~~~~~~~~~~~W~~~~~-~~e~~~-~~~ 683 (697)
.... -....++-++-|+|+|||++++.-. .. + -++++.+... ++.... +.+... +.-
T Consensus 151 ~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~~~~~~~~ 220 (227)
T 1g8a_A 151 VAQP--------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLEPYEKDHA 220 (227)
T ss_dssp CCST--------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTTTSSSEE
T ss_pred CCCH--------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccCcccCCCE
Confidence 4311 1112458999999999999998411 11 1 2456666333 765433 322222 344
Q ss_pred EEEEEcc
Q 005432 684 LLICQKP 690 (697)
Q Consensus 684 ~li~~K~ 690 (697)
+++++|+
T Consensus 221 ~~~~~~~ 227 (227)
T 1g8a_A 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6777763
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0001 Score=72.84 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=58.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----CcccccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.+|||+|||.|.++..|.+.. -+|+-+|-. ..+..+-++ .+--+..|..+.++ -+.+||+|.+...+.
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV-----DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAP 145 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS-----SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBS
T ss_pred CEEEEEcCCCCHHHHHHHHHc-----CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHH
Confidence 389999999999999998732 234444443 444444443 22223334444333 236899999987765
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
... -++-|+|+|||.+++...
T Consensus 146 ~~~------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 146 TLL------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SCC------------HHHHHTEEEEEEEEEEEC
T ss_pred HHH------------HHHHHHcCCCcEEEEEEc
Confidence 432 378899999999999754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00074 Score=68.71 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCCCCCceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccC-ccccccccccc--CCCCCCcccc
Q 005432 539 PSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEA--FPTYPRTYDL 612 (697)
Q Consensus 539 ~~~~~~~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RG-lig~~~~~~e~--f~typrtyDl 612 (697)
..+++|. +|||+|||.|.|+.+|.+. +-.|....+.|.-...-...+-+++ +..+..|-+.+ .+.-+.++|+
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 4445554 8999999999999999852 1235555554432211222333444 45555555543 2223367888
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|.++-.+. -....++-|+-|+|+|||.++|.
T Consensus 151 Vf~d~~~~--------~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 151 LYADVAQP--------EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EEECCCCT--------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccCC--------hhHHHHHHHHHHhccCCCEEEEE
Confidence 87642221 12346889999999999999986
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00011 Score=70.64 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCCC-CCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTY-PRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~ty-prtyDl~H~~~ 617 (697)
.+|||+|||.|.++.++++.+.. .|+-+|-. ..+..+-+ .|+ +- +..|..+..+.+ +.+||+|-++.
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA----SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 47999999999999977763211 23333433 33333322 243 11 222333322222 47899999976
Q ss_pred ccccccCCCCCCCcchhhhhhcc--cccCCcEEEEEcC
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDR--ILRPEGWVIIRDT 653 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dR--iLRP~G~~i~~d~ 653 (697)
.|.... -.+..++-++-| +|+|||.+++...
T Consensus 122 p~~~~~-----~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVDS-----ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CTTSCH-----HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCcch-----hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 655321 234578888888 9999999999743
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=8.8e-05 Score=81.25 Aligned_cols=114 Identities=14% Similarity=0.233 Sum_probs=70.5
Q ss_pred eeEEEecccC------chhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCcccccccccc-cCCCC----CCccc
Q 005432 546 VRNVLDMNAH------FGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE-AFPTY----PRTYD 611 (697)
Q Consensus 546 iRnvmDm~~g------~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e-~f~ty----prtyD 611 (697)
-.+|||+||| .||....|... +..|..+-+-|.- . .....+-=+..|-.+ +|... +.+||
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m----~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS----H--VDELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----G--GCBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----h--hcCCCcEEEEecccccchhhhhhcccCCcc
Confidence 3689999999 78877777652 2234444444332 1 111122112223222 12200 26899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------------HHHHHHHHHHHhhcCceeE
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------ARLIESARALTTRLKWDAR 672 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------------~~~~~~~~~~~~~~~W~~~ 672 (697)
+|.++.. ++. ......|-|+=|+|||||++|+.|- ..+++.++++...++|.-.
T Consensus 291 lVisdgs--H~~-----~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~~ 362 (419)
T 3sso_A 291 IVIDDGS--HIN-----AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQEL 362 (419)
T ss_dssp EEEECSC--CCH-----HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGGS
T ss_pred EEEECCc--ccc-----hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhccccc
Confidence 9998654 222 2345789999999999999999632 3578999999999997643
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00038 Score=70.09 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=66.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------------Cccc---ccccccccCCC-C-CC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------------GFVG---VLHDWCEAFPT-Y-PR 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------------Glig---~~~~~~e~f~t-y-pr 608 (697)
..|||+|||.|+|+.+|...... .+|+-+|-. .-+..+-++ |+-. +..|..+.++. + +.
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE---DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT---SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC---CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 57999999999999998863211 234444433 333333221 4411 22233222221 2 26
Q ss_pred ccccccccCccc-ccc---CCCCCCCcchhhhhhcccccCCcEEEE-EcCHHHHHHHHHHHhhcCc
Q 005432 609 TYDLVHAEGLLS-LES---GHRHRCSTLDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKW 669 (697)
Q Consensus 609 tyDl~H~~~~~~-~~~---~~~~~c~~~~~l~E~dRiLRP~G~~i~-~d~~~~~~~~~~~~~~~~W 669 (697)
++|.|... |. .+. ....|-....++-++-|+|+|||.+++ .|..+..+.+.+.+..-.+
T Consensus 128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 78877532 21 110 000122224789999999999999998 4776666666655554433
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00012 Score=73.52 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=53.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cch-hhH---h----ccCcccc--cccccccCCC-CCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL-PMI---L----DRGFVGV--LHDWCEAFPT-YPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l-~~i---~----~RGlig~--~~~~~e~f~t-yprtyDl~H 614 (697)
..|||+|||.|.++.+|...... .+|+=+|-. ..+ .++ - +.|+-.+ ...=.+.+|. +...+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~---~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQN---TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTT---EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 57999999999999999842222 234444543 333 222 2 3455221 1111223332 113444454
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+...+..... ..+-....+|-|+-|+|||||.+++
T Consensus 103 ~~~~~~~~~~-~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLLE-YVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHHH-HHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHhh-hhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4322111000 0112234688999999999999999
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00048 Score=69.65 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=57.6
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCC----CCchhhHhcc----Cc---ccc-ccc-cc-ccCCCCCCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIG----TNHLPMILDR----GF---VGV-LHD-WC-EAFPTYPRTYD 611 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~----~~~l~~i~~R----Gl---ig~-~~~-~~-e~f~typrtyD 611 (697)
..|||+|||.|.++..|.+...+ .-|.-|=+... +..+..+-++ |+ +-+ ..| .. +..+.-+.+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 47999999999999999863111 32333322221 1255544332 33 111 122 21 12221237999
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+|++..++.+.. + ...++-.+.++++|||++++.+
T Consensus 125 ~v~~~~~l~~~~---~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 125 RVVLAHSLWYFA---S---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EEEEESCGGGSS---C---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEccchhhCC---C---HHHHHHHHHHHhCCCCEEEEEE
Confidence 999999987664 2 2344445566666799999963
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00038 Score=70.26 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=67.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----------cCc--cc-ccccccccCC--CCCCc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------RGF--VG-VLHDWCEAFP--TYPRT 609 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----------RGl--ig-~~~~~~e~f~--typrt 609 (697)
-..|||+|||.|.|+.+|.+..... +|+=+|-. ..+..+-+ .|+ |- +..|..+.++ .-+.+
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3579999999999999998631122 33333433 23322211 233 11 1223322222 11379
Q ss_pred cccccccCccccccC---CCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcC-cee
Q 005432 610 YDLVHAEGLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLK-WDA 671 (697)
Q Consensus 610 yDl~H~~~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~-W~~ 671 (697)
||+|.+... ..|.. .+.|.....+|-|+-|+|+|||.+++. |.....+.+.+....-. |+.
T Consensus 124 ~D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~ 189 (235)
T 3ckk_A 124 LTKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFER 189 (235)
T ss_dssp EEEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred eeEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 999875321 11210 013344457999999999999999985 66666666666554443 443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.10 E-value=8.5e-05 Score=73.82 Aligned_cols=94 Identities=11% Similarity=0.182 Sum_probs=60.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc---cc-ccccccccCCCC--CCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTY--PRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl---ig-~~~~~~e~f~ty--prtyDl~H~ 615 (697)
.+|||+|||.|.++.+|.+. .+ .-+|+-++-. ..+..+-++ |+ |- +..|..+..+.. +.+||+|-+
T Consensus 56 ~~vLdiG~G~G~~~~~la~~-~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQA-LP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHH-CT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHH-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 48999999999999999863 21 1234444443 444444443 43 11 223444433333 478999988
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+...+. ...+|-++-|+|||||.+++.+
T Consensus 133 ~~~~~~---------~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKGQ---------YRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGSC---------HHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHHH---------HHHHHHHHHHHcCCCeEEEEEc
Confidence 655432 3368889999999999999974
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0002 Score=68.62 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=53.9
Q ss_pred eEEEecccCchhhhhhhhccC-----------CCeEEEEeecCCCCCchhhHhccCcccccccccc---------cCCCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-----------KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTY 606 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-----------~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e---------~f~ty 606 (697)
.+|||+|||.|.++.+|.+.- ..|..+-+.|......+.++ . -.|... .++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~-- 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLP-- 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSG--
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcC--
Confidence 489999999999999998631 22444444332111111111 0 111111 122
Q ss_pred CCccccccccCcccccc----C-CCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 607 PRTYDLVHAEGLLSLES----G-HRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 607 prtyDl~H~~~~~~~~~----~-~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
..+||+|-|+..+.... . .........++-|+-|+|||||.+++.+
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 15899999865433210 0 0000011367889999999999999973
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=67.04 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=70.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc-------cCc---cccc-ccccccCC-----CC-CC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-------RGF---VGVL-HDWCEAFP-----TY-PR 608 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~-------RGl---ig~~-~~~~e~f~-----ty-pr 608 (697)
.+|||+|||.|.++..|.+. .+- .+|+-+|-. ..+..+-+ .|+ +-++ .|..+..+ .+ +.
T Consensus 38 ~~VLDlG~G~G~~~l~la~~-~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAAR-LEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHH-CTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 58999999999999888763 221 234444433 22222221 233 1222 23322211 12 37
Q ss_pred ccccccccCccccccC------------CCCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCcee
Q 005432 609 TYDLVHAEGLLSLESG------------HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDA 671 (697)
Q Consensus 609 tyDl~H~~~~~~~~~~------------~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~ 671 (697)
+||+|-++--|....+ ....+.+..++-++-|+|+|||.+++--..+...++.++++.- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 8999999854432100 0033567788999999999999998876666667777766663 653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.09 E-value=5.7e-05 Score=70.43 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc-c-cccccccccCCCCC---Ccccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-V-GVLHDWCEAFPTYP---RTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl-i-g~~~~~~e~f~typ---rtyDl~H~~ 616 (697)
.+|||+|||.|.++.+|.+.... |+-+|-. ..+..+-+ .|+ + =+..|+.+..+..+ .+||+|.++
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~-----v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE-----AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE-----EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe-----EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 47999999999999999874322 4444543 33333332 232 1 11223333222222 379999998
Q ss_pred CccccccCCCCCCCcchhhhhhc--ccccCCcEEEEEcC
Q 005432 617 GLLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDT 653 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~d--RiLRP~G~~i~~d~ 653 (697)
..|. . . ...++-++- |+|+|||.+++...
T Consensus 118 ~~~~--~---~---~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA--M---D---LAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT--S---C---TTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc--h---h---HHHHHHHHHhhcccCCCcEEEEEeC
Confidence 7765 1 1 224555555 99999999999643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00044 Score=69.14 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred eEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc-----Cc---cccccccccc-CCCCCCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----GF---VGVLHDWCEA-FPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R-----Gl---ig~~~~~~e~-f~typrtyDl~H~ 615 (697)
.+|||+|||.|.++.+|.+. .... +|+-+|.. ..+..+-++ |. --...|..+. |+. .+||+|-+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~--~~~D~v~~ 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE--AAYDGVAL 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT--TCEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC--CCcCEEEE
Confidence 48999999999999999863 1011 33444433 444444433 42 1122344443 332 68999987
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-HHHHHHHHHHhhcCce
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWD 670 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~ 670 (697)
+ --....+|-++-|+|+|||.+++.... +.+.++.+.++...|.
T Consensus 173 ~-----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 D-----------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp E-----------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred C-----------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2 112336899999999999999997654 3555655555555554
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=8.7e-05 Score=73.21 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=71.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cccc-ccccccCCCCC-----Ccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVL-HDWCEAFPTYP-----RTYDL 612 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig~~-~~~~e~f~typ-----rtyDl 612 (697)
++|||+|||.|.++.+|.+.-.+- -.|+-+|-. ..+..+-+ .|+ +-++ .|..+.++..+ .+||+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 589999999999999998621100 123333332 33333322 244 1111 22222222221 57999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC------------HHHHHHHHHH----HhhcCceeEEeee
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARAL----TTRLKWDARVIEI 676 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~~----~~~~~W~~~~~~~ 676 (697)
|.++... .....++-++-|+|||||.+++.+. ......++++ ...=++++....+
T Consensus 149 v~~d~~~---------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 219 (229)
T 2avd_A 149 AVVDADK---------ENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 219 (229)
T ss_dssp EEECSCS---------TTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEECCCH---------HHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec
Confidence 9985432 2234678889999999999999532 2233334433 3344466555432
Q ss_pred ccCCCccEEEEEcc
Q 005432 677 ESNSDERLLICQKP 690 (697)
Q Consensus 677 e~~~~~~~li~~K~ 690 (697)
.+.++|+.|.
T Consensus 220 ----~dGl~~~~k~ 229 (229)
T 2avd_A 220 ----GDGLTLAFKI 229 (229)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCceEEEEEC
Confidence 2678888773
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=71.22 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-------CCcEEEeecccCCC-CCCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-------LPAMIGSFASKQLP-YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-------l~~~~~~~da~~LP-fpd~sFDl 350 (697)
++.+|||+.||+|.=+.+|++.+ ....|+++|.++.-++..+++ + .++.+...|+..++ ...+.||.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 34899999999999999998874 345799999999877655432 2 24556666766654 34578999
Q ss_pred EEe----ccc---ccc--------cccc--------HHHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 351 LHC----ARC---GVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 351 V~~----~~~---llh--------~~~d--------~~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
|++ +.. ... +.+. ..++|....+.|||||+|+.++-....
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 995 321 111 1100 125788899999999999999865543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00014 Score=73.24 Aligned_cols=96 Identities=8% Similarity=0.018 Sum_probs=56.4
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCccc---c-cccccccCCCC------CCcc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG---V-LHDWCEAFPTY------PRTY 610 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig---~-~~~~~e~f~ty------prty 610 (697)
-++|||+|||.|..+.+|.+.-.+- -.|+-+|-. ..+.++ -+.|+-. + ..|..+.++.. +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4689999999999998887520000 122323322 223322 2235421 1 22333333322 4789
Q ss_pred ccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 611 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 611 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
|+|.++.--. ....++-++-|+|||||++++.+
T Consensus 149 D~I~~d~~~~---------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP---------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH---------HHHHHHHHHHHhcCCCeEEEEec
Confidence 9998864322 23467888889999999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00015 Score=73.65 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=56.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc---cccc-ccccccCCCC------CCcc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVL-HDWCEAFPTY------PRTY 610 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl---ig~~-~~~~e~f~ty------prty 610 (697)
-++|||+|||.|.++..|.+.-.+- -.|+-.|-. ..+.++- +.|+ |-++ .|..+..+.. +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3589999999999999887631000 123333322 2232222 2354 1122 2333322322 4789
Q ss_pred ccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 611 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 611 Dl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
|+|.++.... ....++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~~~---------~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADKD---------NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCST---------THHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCchH---------HHHHHHHHHHHhCCCCeEEEEec
Confidence 9998854322 23467888899999999999854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00027 Score=73.09 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=62.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcc-ccccccccc-C---CCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFV-GVLHDWCEA-F---PTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGli-g~~~~~~e~-f---~typrtyDl~H~~~~~~ 620 (697)
..|||+|||.|.++..|.+... .|+-+|.. .-+..+-++--- .+-.+|... + ...+.+||+|-|+.++.
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~-----~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA-----SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred CEEEEEeCcchHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhH
Confidence 4799999999999999987433 34444544 445444443210 122333221 1 12246899999998887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
++. .-....+|-+|-|+| |||.++++
T Consensus 122 ~~~----~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 122 RFT----TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GSC----HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred hCC----HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 653 123557899999999 99999997
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00014 Score=78.02 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=62.8
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc-cCcccccccccccCCCCCCccccccccCcccccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~-RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
....|||+|||.|.++.+|.+....+-+ +-.|-+..+..+-+ .++--+.+|..+++ |. ||+|.+..++.++.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~~~---~~-~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKG---INFDLPQVIENAPPLSGIEHVGGDMFASV---PQ-GDAMILKAVCHNWS 281 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHTTCCCCTTEEEEECCTTTCC---CC-EEEEEEESSGGGSC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeE---EEeChHHHHHhhhhcCCCEEEeCCcccCC---CC-CCEEEEecccccCC
Confidence 4578999999999999999874223322 22221211211111 12333345555544 44 99999999998775
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. . ....+|-++-|+|+|||.++|.|
T Consensus 282 d--~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 282 D--E--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp H--H--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred H--H--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 1 12368999999999999999863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0001 Score=69.81 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=59.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc----cccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|.+. +. -+|+-+|-. ..+..+-+ .|+- =+..|+.+.++..+..||+|.++.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSR--GM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHT--TC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHc--CC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 47999999999999999863 22 234444543 33333322 3331 123455454444457799999976
Q ss_pred ccccccCCCCCCCcchhhhhhc--ccccCCcEEEEEcC
Q 005432 618 LLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDT 653 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~d--RiLRP~G~~i~~d~ 653 (697)
.|... ....++-++- |+|+|||.+++...
T Consensus 109 ~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 109 PYAKE-------TIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp SSHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcc-------hHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 65321 1234455554 99999999999643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=75.22 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=63.0
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc-CcccccccccccCCCCCCccccccccCcccc
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
....+.|+|+|||.|.++.+|++. .|-. .++-.|-+..+..+-++ ++-=+-+|.-+++| .. |+|.+..++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAK-YPSI--NAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP---KG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHH-CTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHh-CCCC--EEEEEehHHHHHhhhhcCCCEEEecCCCCCCC---CC-CEEEEechhhc
Confidence 345789999999999999999873 2211 11212212111111111 23223455555554 44 99999999988
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
|.. -....+|-++=|.|+|||.++|.|
T Consensus 274 ~~~----~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 274 WSD----EHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp BCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 862 123468999999999999999964
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00018 Score=69.94 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=57.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--cc-ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.+++.|.+... +|+-+|-. ..+..+-++ |+ +- +..|..+..+. +.+||+|.++..
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 152 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQ-----HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA-RAPFDAIIVTAA 152 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEESSB
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-CCCccEEEEccc
Confidence 4799999999999999987422 33334433 344444332 43 11 22334333222 468999999877
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+.... =++-|+|+|||++++.-.
T Consensus 153 ~~~~~------------~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 153 PPEIP------------TALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CSSCC------------THHHHTEEEEEEEEEEEC
T ss_pred hhhhh------------HHHHHhcccCcEEEEEEc
Confidence 65543 267899999999999643
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00041 Score=73.90 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=56.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHh----ccCc---ccccccccccCCCCC-CccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~----~RGl---ig~~~~~~e~f~typ-rtyDl~H~~~~ 618 (697)
..|||+|||.|.++..|.+.+. . .|+-+|....+..+- +.|+ |-+++.=.+.++ +| .+||+|-+..+
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~-~---~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA-K---KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWM 140 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-S---EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCC
T ss_pred CEEEEeeccCcHHHHHHHHcCC-C---EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCc
Confidence 4799999999999998886321 1 222223222233222 2344 222322222232 34 78999998764
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
..... +.-.+..+|-++.|+|+|||.+|
T Consensus 141 ~~~l~---~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLL---FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBT---TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHHHhhcCCCcEEE
Confidence 22222 22334568999999999999998
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00066 Score=69.52 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=68.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----Cc---ccccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----Gl---ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|+++..|.+.-.+- ..|+-+|-. ..+..+-++ |+ --+..|..++++. .+||+|-++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~fD~Vi~~- 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--QMYDAVIAD- 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--CCEEEEEEC-
T ss_pred CEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC--CCccEEEEc-
Confidence 489999999999999998630011 133334433 444444333 53 1123455554443 689999872
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCHH-HHHHHHHHHhhcCcee
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDA 671 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~-~~~~~~~~~~~~~W~~ 671 (697)
. -....+|-++-|+|+|||.+++.+... ..+++.+......|..
T Consensus 187 ~----------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 187 I----------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp C----------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred C----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 1 123468999999999999999976543 5566666666555654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00078 Score=66.89 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=67.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc----ccccccccccC-CCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAF-PTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl----ig~~~~~~e~f-~typrtyDl~H~~ 616 (697)
.+|||+|||.|.++.+|.+. ..+|+-+|-. ..+..+-++ |+ --+..|..+.+ + +..||+|-++
T Consensus 93 ~~vldiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~ 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV-----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH-----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC
T ss_pred CEEEEeCCCccHHHHHHHHh-----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC
Confidence 37999999999999999863 2345555544 555555443 43 12234455544 2 2689999872
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhc
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRL 667 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~ 667 (697)
--....++-++-|+|+|||.+++... .+.+.++.......
T Consensus 166 -----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 166 -----------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -----------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -----------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 11334688899999999999999766 45566666655544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=70.41 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------------CcEEEeecccCC----CCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------------PAMIGSFASKQL----PYPS 345 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------------~~~~~~~da~~L----Pfpd 345 (697)
++++||=||.|.|..+..++++. ...++.+|+++..++.|++... .+.+...|+... .-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~--~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLK--PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC--CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcC--CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 45899999999999999999874 3679999999999999987421 133444443221 1134
Q ss_pred CCccEEEecccccccccc---------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 346 LSFDMLHCARCGVDWDQK---------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d---------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.||+|+.-..-.....+ ...+++.++++|+|||.++...-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 689999975221110111 13578889999999999998653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00059 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=67.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH--------hccCcc--cccccccccCCCCCCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI--------LDRGFV--GVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i--------~~RGli--g~~~~~~e~f~typrtyDl~H~ 615 (697)
..|||+|||.|.++.+|.+. .|- -+|+-+|-. ..|..+ -.+|+- -..+.=.+.++.-+.+ |.++.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~-~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQ-NPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHH-CTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CEEEEecCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 47999999999999999873 211 133444443 333321 134542 2222112224432345 76663
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc------------------CH-HHHHHHHHHHhhcCceeEEe
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD------------------TA-RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d------------------~~-~~~~~~~~~~~~~~W~~~~~ 674 (697)
.-.+..... .+--+...+|-|+-|+|||||.+++.- .. ...+.++.+...--|++.-.
T Consensus 105 ~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 105 LMPWGSLLR-GVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp ESCCHHHHH-HHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred Eccchhhhh-hhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 221111100 000112578999999999999999852 11 22344777888888877654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00064 Score=72.49 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=59.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCc---ccccccccccCCCCCCccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGl---ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.+|||+|||.|.++..+.+.+. .- |+-++....+..+-+ .|+ |-+++.=-+.++ .|..||+|-+..++
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~-~~---V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA-RK---IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMG 126 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-SE---EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCB
T ss_pred CEEEEcCCCccHHHHHHHhCCC-CE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCch
Confidence 4899999999999988876321 12 222222223332222 254 222222122222 35789999998877
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.++. .-.+...+.++-|+|+|||.+++.
T Consensus 127 ~~~~----~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLF----NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBT----TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCC----hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 6654 133556788999999999999853
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0013 Score=68.41 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=56.5
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCC--C-CchhhHhcc--Ccccc--cccccccCCCCCCccccccccCc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG--T-NHLPMILDR--GFVGV--LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~--~-~~l~~i~~R--Glig~--~~~~~e~f~typrtyDl~H~~~~ 618 (697)
-..|||+|||.|+|+..|.+. ..|.-+-+.|.-. . +.+. .-.. ++.-+ -.|-. .++ +.+||+|-|+..
T Consensus 83 g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~~~~-~~~~~~~v~~~~~~~D~~-~l~--~~~fD~Vvsd~~ 157 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEKPRL-VETFGWNLITFKSKVDVT-KME--PFQADTVLCDIG 157 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCCCCC-CCCTTGGGEEEECSCCGG-GCC--CCCCSEEEECCC
T ss_pred CCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhchhh-hhhcCCCeEEEeccCcHh-hCC--CCCcCEEEECCC
Confidence 358999999999999999874 5677666666310 0 1000 0000 11111 12322 244 589999998654
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCc--EEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEG--WVIIR 651 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G--~~i~~ 651 (697)
+..-....+.-....+|-++.|+|+||| .|++.
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 2110000000000126788999999999 99885
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00079 Score=72.85 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=58.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCccc------ccccccccCCCCCCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG------VLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGlig------~~~~~~e~f~typrtyDl~H~ 615 (697)
.+|||+|||.|.|+.+|.+..... .|+-+|.. ..+..+ -+.|+-. +..|..+.++ +.+||+|-+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~ 298 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLC 298 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEE
Confidence 689999999999999998742111 23333332 222222 2234321 2334444443 268999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+-.|..... -.+-....++-++-|+|+|||.+++-
T Consensus 299 nppfh~~~~-~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 299 NPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp CCCC--------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccCcc-cCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 888764210 01122235789999999999999995
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0003 Score=69.31 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=54.0
Q ss_pred eEEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc----C--------cccccccccccCCCCCCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYDL 612 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----G--------lig~~~~~~e~f~typrtyDl 612 (697)
.+|||+|||.|.+++.|.+. +... +|+-+|-. ..+..+-++ | +--+..|..+.++ -+.+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 37999999999999998752 1111 23333332 333333221 1 2122334443322 1368999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
|+++..+. .++-++-|+|+|||.+++.-
T Consensus 155 i~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP------------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 99865542 35668889999999999964
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00046 Score=74.04 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=63.0
Q ss_pred CceeEEEecccCchhhhhhhhccCC--CeEEEEeecCCCCCchhhHhcc-CcccccccccccCCCCCCccccccccCccc
Q 005432 544 NMVRNVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~--~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
...+.|+|+|||.|.++.+|++... .+.+.-+ +..+..+-++ ++-=+-+|..+++| .. |+|.+..++.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-----PHVISEAPQFPGVTHVGGDMFKEVP---SG-DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-----HHHHHhhhhcCCeEEEeCCcCCCCC---CC-CEEEehHHhc
Confidence 4578999999999999999986321 2222222 2112111111 23233455555555 34 9999999998
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.|.. -....+|-++=|.|+|||+++|.|
T Consensus 271 ~~~d----~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 271 DWSD----QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GSCH----HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCH----HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8852 123468999999999999999964
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=67.95 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=54.8
Q ss_pred eEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhcc-CcccccccccccC--CCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f--~typrtyDl~H~~~~~~ 620 (697)
-.|||+|||.|++++.|.+. +-.|..+-+-|.-...-+..+-+| .+.-+..|-..+. ...+.+||+|.++..+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 47999999999999888752 113444333221100112223333 3444455544432 1224689999886433
Q ss_pred cccCCCCCCCcchhhh-hhcccccCCcEEEEE
Q 005432 621 LESGHRHRCSTLDIFT-EIDRILRPEGWVIIR 651 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~-E~dRiLRP~G~~i~~ 651 (697)
.....+|+ .+.|+|||||.+++.
T Consensus 157 --------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 --------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp --------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 22224444 566799999999985
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00047 Score=69.73 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=56.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc--ccccccccccCCCCCCccccccccCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.+|||+|||.|.++..|.+.-... +|+-+|-. ..+..+-+++- .=+..|.. .++.-+.+||+|.+...
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESC-----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCC-----
Confidence 479999999999999998731011 33334443 55555555541 11122222 23322378999998432
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
...+-|+-|+|||||.+++.+
T Consensus 158 --------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 --------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp --------CCCHHHHHHHEEEEEEEEEEE
T ss_pred --------hhhHHHHHHhcCCCcEEEEEE
Confidence 236889999999999999864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00075 Score=70.08 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=80.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---cc-ccccccccCCCCCCcc---cccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTY---DLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig-~~~~~~e~f~typrty---Dl~H 614 (697)
.+|||+|||.|.++.+|... +- .+|+-+|-. ..+.++-+ .|+ +- +..||.++++ .+| |+|-
T Consensus 125 ~~vLDlG~GsG~~~~~la~~--~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~Iv 197 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF--SD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMIL 197 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEE
T ss_pred CEEEEEeCchhHHHHHHHHC--CC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEE
Confidence 36999999999999999863 21 134444443 44444333 244 22 3456666553 578 9998
Q ss_pred ccCccccccC--------C-----CCCCCcchhhhhhc-ccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCC
Q 005432 615 AEGLLSLESG--------H-----RHRCSTLDIFTEID-RILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 680 (697)
Q Consensus 615 ~~~~~~~~~~--------~-----~~~c~~~~~l~E~d-RiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~ 680 (697)
++--+..... . -..+....++-++= +.|+|||++++--..+.-+.+.++.+.. .++ .+-.+
T Consensus 198 snPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~----~~~-~D~~g 272 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT----VFL-KDSAG 272 (284)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC----EEE-ECTTS
T ss_pred EcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC----Cee-cccCC
Confidence 8633221110 0 01123336788888 9999999999975555566777766654 222 22345
Q ss_pred CccEEEEEcc
Q 005432 681 DERLLICQKP 690 (697)
Q Consensus 681 ~~~~li~~K~ 690 (697)
.++++++.++
T Consensus 273 ~~R~~~~~~k 282 (284)
T 1nv8_A 273 KYRFLLLNRR 282 (284)
T ss_dssp SEEEEEEECC
T ss_pred CceEEEEEEc
Confidence 6888887764
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0005 Score=67.23 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=59.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc----ccc-cccccccCCCC-CCc-ccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGV-LHDWCEAFPTY-PRT-YDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl----ig~-~~~~~e~f~ty-prt-yDl~H 614 (697)
..|||+|||.|.|+.+++... . -.|+-+|-. ..+..+-+ .|+ +-+ ..|..+..+.. +.+ ||+|-
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~-~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQ-A---KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTT-C---SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CeEEEcCCccCHHHHHHHHcc-C---CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 379999999999998766532 1 134445543 44443332 233 111 22333323332 468 99999
Q ss_pred ccCccccccCCCCCCCcchhhhhh--cccccCCcEEEEEcCHH
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTAR 655 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d~~~ 655 (697)
++..|.. -....++-++ -|+|+|||.+++.....
T Consensus 131 ~~~~~~~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 131 LDPPFHF-------NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECCCSSS-------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ECCCCCC-------ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8766531 1234567777 78999999999975543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=65.82 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=69.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc----ccccccccccCCCCCCccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl----ig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+|||+|||.|.++.+|++.-.+- .+|+-+|-. ..+..+-++ |+ --+..|..+.++. .+||+|-++-
T Consensus 115 ~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~V~~~~- 189 (277)
T 1o54_A 115 RIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALFLDV- 189 (277)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEEECC-
T ss_pred EEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC--CccCEEEECC-
Confidence 79999999999999998630111 134445543 445444433 43 1233455555443 6899998721
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCcee
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDA 671 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~ 671 (697)
-....+|-++-|+|+|||.+++... ...+.++.+.++...|..
T Consensus 190 ----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 190 ----------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp ----------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred ----------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 1123688899999999999999765 345666666666666653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=67.92 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=66.5
Q ss_pred eEEEecccCchhhhhhhhccCC--CeEEEEeecCCCCCchhhHh----ccCc---ccccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~--~vwvmnv~p~~~~~~l~~i~----~RGl---ig~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|+|+..|..... .|..+-+.| ..+..+- ..|+ .-+..|..+. +. +.+||+|-++.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRDV-EL-KDVADRVIMGY 194 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGGC-CC-TTCEEEEEECC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHHc-Cc-cCCceEEEECC
Confidence 4799999999999999886322 333333322 2222221 1233 2122233332 32 56899997754
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH-------HHHHHHHHHHhhcCceeEEe
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------RLIESARALTTRLKWDARVI 674 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. ....++.++-|+|+|||.+++.+.. ...+.++.+.+.+.+++...
T Consensus 195 p~----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
T 3a27_A 195 VH----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDY 248 (272)
T ss_dssp CS----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred cc----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeEEe
Confidence 33 3456888999999999999997442 23344555666666655543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0098 Score=62.10 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHH--------------------------HHHHHH----HcCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGS--------------------------QVQLTL----ERGL 329 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~----g~~~~sV~gvD~S~~--------------------------ml~~A~----ergl 329 (697)
+..|||+|+..|..+..+++. +.....|+++|..+. .++.++ +.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 479999999999988887643 112345778775311 122232 2344
Q ss_pred ---CcEEEeecccC-CC-CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 330 ---PAMIGSFASKQ-LP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 330 ---~~~~~~~da~~-LP-fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+.+..+++.. +| +++++||+|+.-.- ........|..+.+.|+|||++++.+.
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 36666665533 44 44678999997643 112234689999999999999999886
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00032 Score=68.45 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=56.5
Q ss_pred eEEEecccCchhhhhhhhccCCC-eEEEEeecCCCC-CchhhHhcc----Cc--c-cccccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR----GF--V-GVLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~-vwvmnv~p~~~~-~~l~~i~~R----Gl--i-g~~~~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.+++.|.+...+ . +|+-+|-. ..+..+-++ |+ + -...|..+.++. +.+||+|.+..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP-LAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG-GCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC-CCCeeEEEECC
Confidence 38999999999999999863201 1 23333332 344444332 32 1 122333343331 36899999977
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
.+.... -++-|+|||||.+++.-..
T Consensus 155 ~~~~~~------------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP------------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC------------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH------------HHHHHHcCCCcEEEEEECC
Confidence 765432 3788999999999987443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00052 Score=72.87 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=62.3
Q ss_pred ceeEEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchhhHhc-cCcccccccccccCCCCCCccccccccCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~~i~~-RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
...+|||+|||.|.++.+|.+.. ..+.+.-+ | ..+..+-+ .++-=+.+|..+++| . ||+|.+..++..
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~p---~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTSIP---N-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTCCC---C-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCCCC---C-ccEEEeehhhcc
Confidence 45799999999999999998631 12333333 2 11111111 123223455555444 3 999999999988
Q ss_pred ccCCCCCCCcchhhhhhcccccC---CcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRP---EGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP---~G~~i~~d 652 (697)
|.. . ....+|-++-|+||| ||.++|.|
T Consensus 259 ~~d--~--~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 WTD--K--DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp SCH--H--HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CCH--H--HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 862 1 223789999999999 99999864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.019 Score=60.14 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=64.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCCC-cEEEee-cccCCCCCCCCccEEEecccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGLP-AMIGSF-ASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl~-~~~~~~-da~~LPfpd~sFDlV~~~~~llh 359 (697)
.+||||||++|.++.+.+... ....|.|+|+...--+. .++.+-+ +.+... |...++- ..+|+|+|--. .
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig--e 170 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG--E 170 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC--C
T ss_pred CEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc--c
Confidence 699999999999999887663 34579999987541100 0011111 333333 4445543 56999999754 2
Q ss_pred ccccHH-------HHHHHHHHhccCC-eEEEEEeCCCCh
Q 005432 360 WDQKDG-------ILLLEVDRVLKPG-GYFVWTSPLTNP 390 (697)
Q Consensus 360 ~~~d~~-------~~L~El~RvLKPG-G~Lvis~p~~~~ 390 (697)
-.+++. .+|.-+.+.|++| |-|++-...+..
T Consensus 171 Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~ 209 (321)
T 3lkz_A 171 SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM 209 (321)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS
T ss_pred CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC
Confidence 223321 2566668899999 999998877644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00059 Score=67.48 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=53.5
Q ss_pred EEEecccCchhhhhhhhccCCCe---EEEEeecCCCC-CchhhHhcc----C--------cccccccccccCCCCCCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSV---WVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYD 611 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~v---wvmnv~p~~~~-~~l~~i~~R----G--------lig~~~~~~e~f~typrtyD 611 (697)
.|||+|||.|.+++.|.+.-... +.-.|+-+|-. ..+..+-++ | +--+..|..+.++. ..+||
T Consensus 87 ~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD 165 (227)
T 1r18_A 87 RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYN 165 (227)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEE
T ss_pred EEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCcc
Confidence 79999999999999987620000 00022223322 233332221 1 11123344444432 25899
Q ss_pred cccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 612 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 612 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+|++...+. .++-++-|+|+|||.+++.-
T Consensus 166 ~I~~~~~~~------------~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 166 AIHVGAAAP------------DTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEECSCBS------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEEECCchH------------HHHHHHHHHhcCCCEEEEEE
Confidence 999865543 34568889999999999863
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00045 Score=65.35 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=55.8
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc---cc-ccccccccCCCC---CCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VG-VLHDWCEAFPTY---PRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl---ig-~~~~~~e~f~ty---prtyDl~H 614 (697)
.+|||+|||.|.++.++++. +. -+|+-+|-. ..+..+- ..|+ +- +..|+.+..+.. +.+||+|-
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSR--GM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHT--TC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEeCCccCHHHHHHHHc--CC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 48999999999999988762 21 123333332 3333222 2233 11 223444432211 36899999
Q ss_pred ccCccccccCCCCCCCcchhhhhh--cccccCCcEEEEEc
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRD 652 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d 652 (697)
++..|... ....++-++ -|+|+|||++++..
T Consensus 122 ~~~~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 122 LDPPYAKQ-------EIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp ECCCGGGC-------CHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ECCCCCch-------hHHHHHHHHHHhcccCCCCEEEEEe
Confidence 97765421 123445555 99999999999964
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00049 Score=73.12 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=60.2
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCCCCCccccccccCccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
+|||+|||.|.++.+|.+.. +-+ +|+-+|.. .-+..+-+ .|+-..+ -+...++.-+.+||+|-++..|..-
T Consensus 199 ~VLDlGcG~G~~~~~la~~~-~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHS-PKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHC-TTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred eEEEecCccCHHHHHHHHHC-CCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 69999999999999998632 111 23333432 22333222 2432111 1222233225899999998887631
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. .+.-....++-|+-|+|+|||.+++-.
T Consensus 275 ~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 MQ-TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SH-HHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-CCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 10 011234578999999999999999864
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0025 Score=68.05 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=88.1
Q ss_pred CCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc---cC----cccccccccccCCCCCCcccccc
Q 005432 542 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD---RG----FVGVLHDWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 542 ~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~---RG----lig~~~~~~e~f~typrtyDl~H 614 (697)
++...+.|+|+|||.|.++.+|++. .|=+. ++-.|-+..+..+-+ .+ +-=+-||.-+. -+-.+|++.
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~-~p~~~--~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~---~~~~~D~~~ 249 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSL-YPGCK--ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD---PLPEADLYI 249 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHH-CSSCE--EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS---CCCCCSEEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHh-CCCce--eEeccCHHHHHHHHHhhhhcccCceeeecCccccC---CCCCceEEE
Confidence 4567899999999999999999974 44332 222333333332221 12 11123443221 123589999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH--------------H------------HHHHHHHHHhhcC
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------R------------LIESARALTTRLK 668 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~--------------~------------~~~~~~~~~~~~~ 668 (697)
+.+++..|.. ..| ..||-++=|.|+|||.++|-|.. + ..++.+++++.--
T Consensus 250 ~~~vlh~~~d--~~~--~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 250 LARVLHDWAD--GKC--SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAG 325 (353)
T ss_dssp EESSGGGSCH--HHH--HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHT
T ss_pred eeeecccCCH--HHH--HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 9999998863 233 36899999999999999996531 1 1356677777777
Q ss_pred ceeEEeeeccCCCccEEEEEcc
Q 005432 669 WDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 669 W~~~~~~~e~~~~~~~li~~K~ 690 (697)
|+...+. ..++...+++++|.
T Consensus 326 f~~v~v~-~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 326 FRDFQFK-KTGAIYDAILARKG 346 (353)
T ss_dssp CEEEEEE-CCSSSCEEEEEECC
T ss_pred CceEEEE-EcCCceEEEEEEec
Confidence 8755432 23445678999985
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0036 Score=65.64 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=71.1
Q ss_pred eEEEeccc------Cchh-hhhhhhccCCCeEEEEeecCCCCCchhhHhccCccc-ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNA------HFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~------g~g~-Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RGlig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||+|| |.|+ .+|.++..+..|.-+-+.|. + + ++-= +..|+.+. + ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 36999999 5576 23333321123444444443 1 1 3322 45566552 2 2478999998643
Q ss_pred ccc---c--cCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCc-eeEEeeeccCCCccEEEEEc
Q 005432 619 LSL---E--SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKW-DARVIEIESNSDERLLICQK 689 (697)
Q Consensus 619 ~~~---~--~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W-~~~~~~~e~~~~~~~li~~K 689 (697)
... + ...+..-.+..++-|+-|+|||||.|++..- ....+++.++.+...| .+...-....+.|-+++++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 211 0 0000111123678899999999999998541 1223466667777644 44444222334577887765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=68.07 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=51.2
Q ss_pred eEEEecccCchhhhhhhhcc-C--CCeEEEEeecCCCC-CchhhHhcc------------------CcccccccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGT-NHLPMILDR------------------GFVGVLHDWCEAFP 604 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~-~--~~vwvmnv~p~~~~-~~l~~i~~R------------------Glig~~~~~~e~f~ 604 (697)
.+|||+|||.|.++.+|... + ..|.. +|-. ..+..+-++ .+-=+..|..+...
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~-----vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVIS-----FEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEE-----EESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEE-----EeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 48999999999999999863 1 22332 2322 233332221 11112234444322
Q ss_pred CCC-CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 605 TYP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 605 typ-rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.++ .+||+|.++. .. -..++-++-|+|+|||.+++...
T Consensus 182 ~~~~~~fD~V~~~~-~~----------~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 182 DIKSLTFDAVALDM-LN----------PHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ------EEEEEECS-SS----------TTTTHHHHGGGEEEEEEEEEEES
T ss_pred ccCCCCeeEEEECC-CC----------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 233 5899998832 11 12378889999999999998643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0008 Score=67.64 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=31.4
Q ss_pred CccccccccCccccccCCCC---CCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 608 RTYDLVHAEGLLSLESGHRH---RCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~---~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
.+||+|-|+-.|.......+ .-....++-++-|+|+|||++++.+..
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 48999999765543220000 122336788999999999999996544
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00076 Score=71.76 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=61.7
Q ss_pred ceeEEEecccCchhhhhhhhccCCC--eEEEEeecCCCCCchhhHhc-cCcccccccccccCCCCCCccccccccCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~--vwvmnv~p~~~~~~l~~i~~-RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
...+|+|+|||.|.++.+|++.... +.+.-+ | ..+..+-+ .++--+-+|..+++| .||+|.+..++..
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~~----~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFKSIP----SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTTCCC----CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H----HHHhhcccCCCcEEEeCccCCCCC----CceEEEEcccccC
Confidence 4579999999999999999874212 222222 1 11111111 123233455555444 3999999999988
Q ss_pred ccCCCCCCCcchhhhhhcccccC---CcEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRP---EGWVIIRD 652 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP---~G~~i~~d 652 (697)
|.. ..| ..+|-++-|+|+| ||.++|-|
T Consensus 264 ~~d--~~~--~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 264 WND--EQS--LKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SCH--HHH--HHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CCH--HHH--HHHHHHHHHhCCCCCCCcEEEEEE
Confidence 762 122 3789999999999 99999853
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=63.15 Aligned_cols=131 Identities=14% Similarity=0.194 Sum_probs=68.4
Q ss_pred eEEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchhhHhcc-----CcccccccccccC--CCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDR-----GFVGVLHDWCEAF--PTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~~i~~R-----Glig~~~~~~e~f--~typrtyDl~H~~~ 617 (697)
.+|||+|||.|.++.+|.+.- ..|..+-+.| ..+..+-++ .+.-+..|..++. ..++.+||+|.++
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH----HHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 479999999999999998631 2233333332 222211111 1222223333211 1223689997631
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE----cCH------H-HHHHHHHHHhhcCceeEEe-eeccC-CCccE
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTA------R-LIESARALTTRLKWDARVI-EIESN-SDERL 684 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~----d~~------~-~~~~~~~~~~~~~W~~~~~-~~e~~-~~~~~ 684 (697)
+ . ..-....+|-++-|+|+|||++++. ... . .-++++ ++....++.... +.+.- .+.-+
T Consensus 151 -~---~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~ 222 (230)
T 1fbn_A 151 -V---A---QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVM 222 (230)
T ss_dssp -C---C---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEE
T ss_pred -c---C---ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEE
Confidence 1 1 1111245789999999999999993 211 1 124555 555555654432 22221 12456
Q ss_pred EEEEcc
Q 005432 685 LICQKP 690 (697)
Q Consensus 685 li~~K~ 690 (697)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.003 Score=64.10 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=63.5
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc-----C-c---c-ccccccccc-CCCCCCccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-F---V-GVLHDWCEA-FPTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R-----G-l---i-g~~~~~~e~-f~typrtyDl~H~ 615 (697)
+|||+|||.|.++.+|.+.-.+- .+|+-+|-. ..+..+-++ | + + -+..|..+. ++ +.+||+|-+
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~--~~~~D~v~~ 177 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVDRAVL 177 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEEEEEE
T ss_pred EEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC--CCceeEEEE
Confidence 79999999999999998620010 134444443 444444333 3 2 1 122344333 22 368999987
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhh-cCce
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTR-LKWD 670 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~-~~W~ 670 (697)
+. -....+|-++-|+|+|||++++... .+.+.++...... ..|.
T Consensus 178 ~~-----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 178 DM-----------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp ES-----------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CC-----------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 21 1233689999999999999999653 3444444443333 4443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00074 Score=66.49 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=53.7
Q ss_pred eEEEecccCchhhhhhhhccCC----CeEEEEeecCCCC-CchhhHhcc----Cc-------c-cccccccccCC---CC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK----SVWVMNVVPTIGT-NHLPMILDR----GF-------V-GVLHDWCEAFP---TY 606 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~----~vwvmnv~p~~~~-~~l~~i~~R----Gl-------i-g~~~~~~e~f~---ty 606 (697)
.+|||+|||.|.+++.|.+... +-. +|+-+|-. ..+..+-++ |+ + -+..|..+.++ .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 4899999999999999986321 100 22333332 333333222 31 1 12223333210 11
Q ss_pred CCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 607 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 607 prtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.+||+|++...+. .++-++-++|+|||.+++.-
T Consensus 160 ~~~fD~I~~~~~~~------------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS------------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS------------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH------------HHHHHHHHhcCCCcEEEEEE
Confidence 36799999865543 35678889999999999863
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.002 Score=66.45 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=61.4
Q ss_pred ceeEEEecccCc---hhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----C-ccccccccc------------ccC
Q 005432 545 MVRNVLDMNAHF---GGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G-FVGVLHDWC------------EAF 603 (697)
Q Consensus 545 ~iRnvmDm~~g~---g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----G-lig~~~~~~------------e~f 603 (697)
.++.|||+|||. |.++..+... .|= ..|+=+|-. ..|..+-++ + +-=+..|.. +.|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 478999999999 9887655431 111 134444432 333333222 1 111112222 123
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 604 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 604 ~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+. .+||+|-+..++..+. +. ....+|-|+-|+|+|||++++.+
T Consensus 154 d~--~~~d~v~~~~vlh~~~---d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 154 DF--SRPAAIMLVGMLHYLS---PD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CT--TSCCEEEETTTGGGSC---TT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC--CCCEEEEEechhhhCC---cH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 32 4799999988888775 33 56789999999999999999975
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=63.65 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=57.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cc-ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig-~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..++.... -.|+-+|-. ..+..+-+ .|+ +- +..|..+..+.-+.+||+|-++..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~----~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA----AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC----SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 4799999999999998665321 145555544 34443322 333 21 223333323333468999988766
Q ss_pred cccccCCCCCCCcchhhhhh--cccccCCcEEEEEcCH
Q 005432 619 LSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTA 654 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~--dRiLRP~G~~i~~d~~ 654 (697)
|.. -....++-++ -|+|+|||.+++....
T Consensus 132 ~~~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FRR-------GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SST-------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCC-------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 431 1223455556 4679999999997544
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0056 Score=63.08 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH--HHHHHHH-cCCCcE-EEee-cccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS--QVQLTLE-RGLPAM-IGSF-ASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~--ml~~A~e-rgl~~~-~~~~-da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||+||++|.++.+.++.- ....+.|.++... +...... .|+.+. +.++ |...+ +...+|+|+|-.+ -
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLSDMA-P 149 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYK--PSEISDTLLCDIG-E 149 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGS--CCCCCSEEEECCC-C
T ss_pred CCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCC--CCCCCCEEEeCCC-C
Confidence 4899999999999999998861 1223333333221 0000000 122222 2224 65553 3458999999754 2
Q ss_pred cccccH----H---HHHHHHHHhccCCe-EEEEEeCCC
Q 005432 359 DWDQKD----G---ILLLEVDRVLKPGG-YFVWTSPLT 388 (697)
Q Consensus 359 h~~~d~----~---~~L~El~RvLKPGG-~Lvis~p~~ 388 (697)
. .... . .+|.-+.++|+||| .|++-.+..
T Consensus 150 n-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 150 S-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred C-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 2 2111 1 25666678999999 999877753
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0048 Score=72.96 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=62.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----------cCc--ccccccccccCCCCCCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------RGF--VGVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----------RGl--ig~~~~~~e~f~typrtyDl~ 613 (697)
..|||+|||.|.++.+|.+...+. -.|+=+|-. ..+..+-+ .|+ |-+++.=-+.++..+.+||+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~--a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSL--QTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCC--CEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 579999999999999998742111 123334433 44444433 244 222222123345445899999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.|..++.+.. + -....++-|+-|+|||| ++|+..
T Consensus 801 V~~eVLeHL~---d-p~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 801 TCLEVIEHME---E-DQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEESCGGGSC---H-HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEeCchhhCC---h-HHHHHHHHHHHHHcCCC-EEEEEe
Confidence 9999988765 1 11234778999999999 777754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=67.16 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=64.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--cccc-ccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig~~-~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||||||.|+++.+|.+.-.+- -.|+-.|-. ..+..+-++ |+ +-+. +|. +.++.++.+||+|-++--
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCC
Confidence 379999999999999988521110 123444443 344444333 44 2222 222 223334578999997533
Q ss_pred cccccCCCCC---------CC-------cchhhhhhcccccCCcEEEEEcC----HHHHHHHHHHHhhcCce
Q 005432 619 LSLESGHRHR---------CS-------TLDIFTEIDRILRPEGWVIIRDT----ARLIESARALTTRLKWD 670 (697)
Q Consensus 619 ~~~~~~~~~~---------c~-------~~~~l~E~dRiLRP~G~~i~~d~----~~~~~~~~~~~~~~~W~ 670 (697)
.|....-++. .. -..+|-++-|+|||||.+++..- .+.-+.++.+++...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 2211000000 00 03688889999999999999521 12223344555554443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00098 Score=69.93 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=57.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cccc---ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG---VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig---~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.++..|.+.... .-+|+-+|-. ..+..+-++ |+-. +..|..+..+ -+.+||+|.+...
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTVG 153 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSB
T ss_pred CEEEEecCCchHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcCC
Confidence 37999999999999999863222 0013333332 445444443 5422 2234433222 1368999999777
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 654 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 654 (697)
+.+.. -++-|+|+|||.+++....
T Consensus 154 ~~~~~------------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 154 VDEVP------------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BSCCC------------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHHH------------HHHHHhcCCCcEEEEEECC
Confidence 65432 4678899999999997543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0088 Score=57.70 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=70.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCCCCCccccccccCcccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.+|||+|||.|.|+.+|.+.+.. +|+-+|-. ..+..+-+ .|+ . ..-.+..+..+|.+||+|-++..|..
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKG-K-FKVFIGDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTT-S-EEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHHHHHcCC-C-EEEEECchHHcCCCCCEEEEcCCCcc
Confidence 47999999999999999873211 23333432 33333322 232 1 11112222234568999999887765
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEe
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. . -....++-++-|+| ||.+++. ......+.+.+++....|++...
T Consensus 125 ~~---~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QR---K-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SS---T-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cc---C-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 53 2 12235666777888 6655554 36677788888888888877654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0011 Score=66.10 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=54.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc---ccccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig---~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
.+|||+|||.|.+++.|.+.. + .+|+-+|-. ..+..+-+ .|+-. +..|..++++. ...||+|.++..
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~-~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIV-K---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHH-C---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSB
T ss_pred CEEEEEeCCcCHHHHHHHHHh-C---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCc
Confidence 479999999999999998632 1 133333322 33333333 23311 22333334432 124999998766
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+... .-++-|+|+|||.+++.-.
T Consensus 168 ~~~~------------~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 168 APKI------------PEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BSSC------------CHHHHHTEEEEEEEEEEEC
T ss_pred HHHH------------HHHHHHhcCCCcEEEEEEe
Confidence 5433 3378899999999998643
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.014 Score=61.03 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 326 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e 326 (697)
-..+.+.+.+...++ ..+||.+||.|..+..++++ ...|+|+|.++.+++.|++
T Consensus 9 VLl~e~le~L~~~~g--------g~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 9 VLYQEALDLLAVRPG--------GVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp TTHHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCC--------CEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh
Confidence 345566666665444 79999999999999999987 3579999999999999876
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0068 Score=63.22 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=72.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------Cc----cc-ccccccccCCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Gl----ig-~~~~~~e~f~typrtyDl~H 614 (697)
++|||+|||.|+++.+|++. .++. +|+-+|-. .-+.++-++ |+ +- +..|..+..+..+.+||+|-
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~-~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKH-DSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTS-TTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhc-CCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 68999999999999999862 2332 23333322 222222211 11 11 12232222233357899999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-----HHHHHHHHHHHhhcCceeEEeeec----cCCCccEE
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE----SNSDERLL 685 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e----~~~~~~~l 685 (697)
++. +..+.+....-....++-++-|+|+|||.+++... .+....+.+..++.--.+...... .++...++
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~ 247 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYT 247 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEE
Confidence 753 22211100011124678899999999999999732 233344333333333344433211 12345578
Q ss_pred EEEccc
Q 005432 686 ICQKPF 691 (697)
Q Consensus 686 i~~K~~ 691 (697)
+|.|.+
T Consensus 248 ~as~~~ 253 (296)
T 1inl_A 248 FASKGI 253 (296)
T ss_dssp EEESSC
T ss_pred EecCCC
Confidence 888863
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.011 Score=61.08 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=74.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc------Cc----ccc-cccccccCCCCCCcccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR------GF----VGV-LHDWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R------Gl----ig~-~~~~~e~f~typrtyDl~H 614 (697)
-++|||+|||.|+++..+++. .++-.+-+|=.+. .-+.++-+. ++ +-+ ..|-.+-.+..+.+||+|-
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vEid~-~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhC-CCCceEEEEECCH-HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 478999999999999999862 2332222222221 222222111 11 111 1122111222357899999
Q ss_pred ccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-----HHHHHHHHHHHhhcCceeEEeeec--c--CCCccEE
Q 005432 615 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDERLL 685 (697)
Q Consensus 615 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e--~--~~~~~~l 685 (697)
++... .+.. ....-...++-++-|+|+|||.+++... .+.+..+.+..++.=-.+...... . ++.-.++
T Consensus 154 ~d~~~-~~~~-~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~ 231 (275)
T 1iy9_A 154 VDSTE-PVGP-AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFT 231 (275)
T ss_dssp ESCSS-CCSC-CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEE
T ss_pred ECCCC-CCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEE
Confidence 85432 2210 0111124678899999999999999732 344455544444443334433221 1 2234577
Q ss_pred EEEccc
Q 005432 686 ICQKPF 691 (697)
Q Consensus 686 i~~K~~ 691 (697)
++.|.+
T Consensus 232 ~ask~~ 237 (275)
T 1iy9_A 232 IGSKKY 237 (275)
T ss_dssp EEESSC
T ss_pred EeeCCC
Confidence 888863
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.028 Score=63.49 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc----CC--------ceeEEEEecCCHHHHHHHHH--
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----EL--------LTMCIANYEASGSQVQLTLE-- 326 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~----g~--------~~~sV~gvD~S~~ml~~A~e-- 326 (697)
....+.+.+++.... ..+|+|-.||+|.|.....++ .. ....+.|.|..+.+...|+.
T Consensus 203 ~~Vv~lmv~l~~p~~--------~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQL--------GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp HHHHHHHHHHHCCCT--------TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCC--------CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 344555666654333 378999999999998765442 10 12468999999999888864
Q ss_pred --cCCC-cEEEeecccCCCC----CCCCccEEEeccccc-ccc-------------ccH-HHHHHHHHHhcc-------C
Q 005432 327 --RGLP-AMIGSFASKQLPY----PSLSFDMLHCARCGV-DWD-------------QKD-GILLLEVDRVLK-------P 377 (697)
Q Consensus 327 --rgl~-~~~~~~da~~LPf----pd~sFDlV~~~~~ll-h~~-------------~d~-~~~L~El~RvLK-------P 377 (697)
+|+. ..+...|....|+ +...||+|+++--+- .+. .+. -.++..+.+.|| |
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~ 354 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN 354 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC
Confidence 3443 3455556544442 235799999985421 110 111 235677778886 7
Q ss_pred CeEEEEEeCC
Q 005432 378 GGYFVWTSPL 387 (697)
Q Consensus 378 GG~Lvis~p~ 387 (697)
||++.+..|.
T Consensus 355 gGr~avVlP~ 364 (530)
T 3ufb_A 355 GGRAAVVVPN 364 (530)
T ss_dssp CCEEEEEEEH
T ss_pred CceEEEEecc
Confidence 9999998873
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=68.29 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=70.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc--cccc-ccccccCCCC---CCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTY---PRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~-~~~~e~f~ty---prtyDl~H~ 615 (697)
.+|||++||.|+|+.+|... .-+|+-+|.. ..+..+-+ .|+ +-++ .|..+.++.. +.+||+|.+
T Consensus 211 ~~VLDlg~G~G~~~~~la~~-----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG-----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH-----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeeccCHHHHHHHHh-----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 57999999999999999862 3455555543 33333322 243 1111 1222211211 468999998
Q ss_pred cCccccccCCC---CCCCcchhhhhhcccccCCcEEEEEcCH------HHHHHHHHHHhhcCceeEEee
Q 005432 616 EGLLSLESGHR---HRCSTLDIFTEIDRILRPEGWVIIRDTA------RLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 616 ~~~~~~~~~~~---~~c~~~~~l~E~dRiLRP~G~~i~~d~~------~~~~~~~~~~~~~~W~~~~~~ 675 (697)
+--........ ..-....++.++-|+|+|||++++.... ...+.+++.+.....+..+.+
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 65322111000 0012346888999999999999997432 234555556666665555543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0023 Score=71.61 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=58.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhh----HhccCc---ccc-cccccccCCCCCCccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGV-LHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~----i~~RGl---ig~-~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..|||+|||.|.++..|.+. +.. .|+-+|....+.. +.+.|+ |-+ ..|+.+ + .+|..||+|-+..+
T Consensus 160 ~~VLDiGcGtG~la~~la~~--~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQA--GAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPM 233 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHT--TCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCC
T ss_pred CEEEEecCcccHHHHHHHHc--CCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCc
Confidence 48999999999999988763 211 2222332222222 233455 222 233333 2 24578999999777
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
+..+. .-.+...+.++-|+|+|||++++
T Consensus 234 ~~~~~----~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLF----NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHT----CHHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcC----cHHHHHHHHHHHHhcCCCCEEEE
Confidence 55543 12345677799999999999985
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.006 Score=64.79 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=72.1
Q ss_pred eEEEecccCchhhhhhhhccC---CCeEEEEeecCCCC-CchhhHhc----cCc--ccccccccccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~---~~vwvmnv~p~~~~-~~l~~i~~----RGl--ig~~~~~~e~f~typrtyDl~H~~ 616 (697)
..|||++||.|+|+..+.... ..|. =.|-. ..+..+-+ .|+ |-+.+.=.+.++.....||+|-++
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~-----g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n 279 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVY-----AGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN 279 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEE-----EEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEE-----EEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence 579999999999987766521 2232 22322 33333222 343 222211112233323568999997
Q ss_pred CccccccCCCCCCC----cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEee-eccCC-CccEEEEEc
Q 005432 617 GLLSLESGHRHRCS----TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE-IESNS-DERLLICQK 689 (697)
Q Consensus 617 ~~~~~~~~~~~~c~----~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~-~e~~~-~~~~li~~K 689 (697)
--|..-.. ..-. ...++-++-|+|+|||.+++-..... -++++.+ ..|+..... ..++. .-.+.+++|
T Consensus 280 pPyg~r~~--~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 280 PPHGLRLG--RKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp CCSCC------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTBCCEEEEEEE
T ss_pred CCCcCccC--CcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCEEEEEEEEEc
Confidence 65532110 1111 14678899999999999988644322 2345555 777765432 23444 346677665
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.003 Score=65.08 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=66.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCC-C-CchhhHhc---------cCc-------c-cccccccccCCCC-
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-T-NHLPMILD---------RGF-------V-GVLHDWCEAFPTY- 606 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~-~-~~l~~i~~---------RGl-------i-g~~~~~~e~f~ty- 606 (697)
.+|||+|||.|.++.+|...+. -.|+-+|- . ..+..+-+ .|+ + -...+|.......
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~----~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA----DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC----SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 4799999999999988876322 12333443 1 33333222 222 1 1225576543222
Q ss_pred ----CCccccccccCccccccCCCCCCCcchhhhhhccccc---C--CcEEEE--EcCH----HHHHHHHHHHhhcC-ce
Q 005432 607 ----PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILR---P--EGWVII--RDTA----RLIESARALTTRLK-WD 670 (697)
Q Consensus 607 ----prtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLR---P--~G~~i~--~d~~----~~~~~~~~~~~~~~-W~ 670 (697)
+.+||+|-++.++-.. -....++-++.|+|+ | ||.+++ .... +...++.+.++... |+
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~ 230 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALI 230 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEE
T ss_pred hhccCCCCCEEEEeCcccCh------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEE
Confidence 3789999886665432 235578899999999 9 996544 3211 11233444455555 65
Q ss_pred eEEe
Q 005432 671 ARVI 674 (697)
Q Consensus 671 ~~~~ 674 (697)
+...
T Consensus 231 v~~~ 234 (281)
T 3bzb_A 231 AEPW 234 (281)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0061 Score=63.76 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc------Cc----cc-ccccccccCCC-CCCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPT-YPRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R------Gl----ig-~~~~~~e~f~t-yprtyDl~ 613 (697)
++|||+|||.|+++..|++. .++- .|+-+|-. .-+.++-++ ++ +- +..|..+-... -+.+||+|
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~-~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRH-GTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTC-TTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhC-CCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 68999999999999999862 2322 22222222 222222211 11 11 12233221111 24789999
Q ss_pred cccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-----HHHHHHHHHHHhhcCceeE-Eeeec--c--CCCcc
Q 005432 614 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDAR-VIEIE--S--NSDER 683 (697)
Q Consensus 614 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-----~~~~~~~~~~~~~~~W~~~-~~~~e--~--~~~~~ 683 (697)
-++........ ...--..++-++-|+|+|||.+++... ....+++.+..+...+... ..... + ++.-.
T Consensus 174 i~d~~~~~~~~--~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~ 251 (304)
T 3bwc_A 174 IIDTTDPAGPA--SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG 251 (304)
T ss_dssp EEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred EECCCCccccc--hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence 98644322110 111114678899999999999999632 2455666666666655433 33211 1 22345
Q ss_pred EEEEEcc
Q 005432 684 LLICQKP 690 (697)
Q Consensus 684 ~li~~K~ 690 (697)
++++.|.
T Consensus 252 f~~as~~ 258 (304)
T 3bwc_A 252 TLVCSKK 258 (304)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 7888875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0028 Score=67.46 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=67.4
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc----cccc-ccccccCCCC---CCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVL-HDWCEAFPTY---PRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl----ig~~-~~~~e~f~ty---prtyDl~ 613 (697)
..|||+|||.|+|+.++... .. .|+-+|.. ..+..+-+ -|+ +-++ .|..+..+.. ..+||+|
T Consensus 155 ~~VLDlgcGtG~~sl~la~~--ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAA--GA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHT--TC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CcEEEcccccCHHHHHHHHc--CC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 37999999999999999863 22 45555654 44443332 233 1122 2222211111 3589999
Q ss_pred cccCc-cccccCC---CCCCCcchhhhhhcccccCCcEEEEEc------C-HHHHHHHHHHHhhcCceeEE
Q 005432 614 HAEGL-LSLESGH---RHRCSTLDIFTEIDRILRPEGWVIIRD------T-ARLIESARALTTRLKWDARV 673 (697)
Q Consensus 614 H~~~~-~~~~~~~---~~~c~~~~~l~E~dRiLRP~G~~i~~d------~-~~~~~~~~~~~~~~~W~~~~ 673 (697)
-++-- |..-... ...-....++-++-|+|+|||++++.. + ....+.+++.+.....++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 87543 2211000 000123468888999999999977742 1 23344445566666666553
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.002 Score=84.95 Aligned_cols=102 Identities=12% Similarity=0.194 Sum_probs=49.4
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCC-CCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQL-PYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~----g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~L-Pfpd~sFDlV~~~~~ 356 (697)
..+|||||.|+|..+..+.+. .....+++-.|+|+...+.|+++. +.+.....+.... ++..++||+|++.++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 468999999999876554432 112356788899876665555441 1222222232222 345678999999988
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|-..+....|.+++++|||||++++...
T Consensus 1321 -l~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1321 -LATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ---------------------CCEEEEEEC
T ss_pred -ccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 67677788899999999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=68.61 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=69.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccc--cccccccCCCCCCccccccccCc-
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGV--LHDWCEAFPTYPRTYDLVHAEGL- 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~--~~~~~e~f~typrtyDl~H~~~~- 618 (697)
.+|||++||+|+|+.++...+.. |+-+|-. ..+..+-+ .|+-.. ..|..+..+.++..||+|.++--
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~-----V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAY-----ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCE-----EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CeEEEcccchhHHHHHHHHcCCe-----EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 47999999999999999874332 3333433 33332222 233211 23333333333445999998643
Q ss_pred cccccCC--CCCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcCceeEEee
Q 005432 619 LSLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 619 ~~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
|..-... ........++-++=|+|+|||++++... ....+.+++.+.....++.+.+
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~ 355 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHR 355 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 2211100 0001223678888999999999996532 2445566666666665655553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 697 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 7e-07 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-05 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 2e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 9e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.001 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.002 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.002 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 8/173 (4%)
Query: 254 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIAN 313
++ +E +I + + E VR +LD+ CG G L + + +
Sbjct: 14 TIYRRRIERVKAEIDFVEEIFKE--DAKREVRRVLDLACGTGIPTLELAERGYEVVGLDL 71
Query: 314 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEV 371
+E + + + FD + + ++ L +V
Sbjct: 72 HEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKV 131
Query: 372 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDET 424
LKPGG F+ P F ++ WN + + + + +
Sbjct: 132 AEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.2 bits (116), Expect = 7e-07
Identities = 29/268 (10%), Positives = 68/268 (25%), Gaps = 48/268 (17%)
Query: 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---------FSKELLTMCI 311
+Y + ++ G +LD+ CG G L +
Sbjct: 42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93
Query: 312 ANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS-------LSFDMLHCARCGVDWDQKD 364
A E + + ++ + + + +
Sbjct: 94 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 153
Query: 365 GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN--FVRDFVENLCWELVSQQD 422
+ L + +++PGG V N L N + D +++ +++ +
Sbjct: 154 RLALKNIASMVRPGGLLVIDHR--NYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNN 211
Query: 423 ETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRN 482
+ + Y+ + PG+G + YY +
Sbjct: 212 KAHMVTLD-----YTVQVPGAGRDGAPGFSKFRLSYY--------------PHCLASFTE 252
Query: 483 WPSRANLNKNELAVYG-VHPEEFAEDTE 509
A + + +V G P +
Sbjct: 253 LVQEAFGGRCQHSVLGDFKPYRPGQAYV 280
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 26/177 (14%)
Query: 271 IGLRNESNFILAGV--------RTILDIGCGYGSFGAHL------------FSKELLTMC 310
I +RN +NFI A + ++LD+GCG G ++ +
Sbjct: 4 INIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA 63
Query: 311 IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLE 370
+ ++ K+ S F + D
Sbjct: 64 RVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQR----N 119
Query: 371 VDRVLKPGGYFVWTSPLTNP--QAFLRNKENQKRWNFVRDFVENLCWELVSQQDETV 425
+ R L+PGGYF+ T P + + + + + + + + +E++ E V + T+
Sbjct: 120 IARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 176
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 345
+LD+G G G + L + + + + + + ++ LP+PS
Sbjct: 45 RVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR----EKGVKNVVEAKAEDLPFPS 100
Query: 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 405
+F+ + + + + E+ RVL P G + T N FL+ + W+
Sbjct: 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD--NFYTFLQQMIEKDAWDQ 158
Query: 406 VRDFVENLCWEL 417
+ F++ +
Sbjct: 159 ITRFLKTQTTSV 170
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 261 EDYSHQIAEMIGLRNESNFILAGVR-----TILDIGCGYGSFGAHLFSKELLTMCIANYE 315
E+Y E GL + +LA + LD+GCG G +L +
Sbjct: 6 ENYFT---EKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP 62
Query: 316 ASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW--DQKDGILLLEVDR 373
AS + ++ + + + + + Q L+ + R
Sbjct: 63 ASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQR 122
Query: 374 VLKPGGYFVWTSPLTNPQ 391
KPGGY + + + P
Sbjct: 123 CTKPGGYNLIVAAMDTPD 140
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 16/158 (10%), Positives = 38/158 (24%), Gaps = 25/158 (15%)
Query: 249 SFRSASLIFDGVEDYSHQ-IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL 307
F + S ++++ + + +IG ++ + ++ IL IG G G + SK
Sbjct: 9 RFLNHSTEHQCMQEFMDKKLPGIIGRIGDTK---SEIK-ILSIGGGAGEIDLQILSKVQA 64
Query: 308 TMCIANYEASG-------------------SQVQLTLERGLPAMIGSFASKQLPYPSLSF 348
+ + + +
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 349 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386
D +H + L +L +
Sbjct: 125 DFIHMIQMLYYVKDIPA-TLKFFHSLLGTNAKMLIIVV 161
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 9e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 286 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 345
I+D G G G+ A L + + YE +L + + ++ S
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 390
FD +D + + LK GG F P TN
Sbjct: 166 EGFDEKDVDALFLDVPDPWNYID-KCWEALKGGGRFATVCPTTNQ 209
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 39.1 bits (90), Expect = 0.001
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 344
I+D GCGYG G L ++ + + E S +
Sbjct: 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 88
Query: 345 SLSFDMLHCARC--GVDWDQKDGILLLEVDRVLKPGGYFVWTSP--LTNPQAFLRNKENQ 400
D A C + +L ++ +K GG + P ++N ++L + E Q
Sbjct: 89 IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQ 148
Query: 401 KRW 403
+
Sbjct: 149 SEF 151
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 10/136 (7%)
Query: 261 EDYSHQIAEMIGLRNESNFILAGVR-------TILDIGCGYGSFGAHLFSKELLTMCIAN 313
Y I + + S+FI+ LD+ CG G+ +L K T +
Sbjct: 8 HIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67
Query: 314 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGIL---LLE 370
+ S+ + + + FD++ C ++ L
Sbjct: 68 SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKA 127
Query: 371 VDRVLKPGGYFVWTSP 386
V LK GG F++
Sbjct: 128 VSNHLKEGGVFIFDIN 143
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.7 bits (89), Expect = 0.001
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 344
+L++G G F + L C+ EAS + R + + +
Sbjct: 22 GNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQL 78
Query: 345 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 399
+D + D +L D L GG P N + +
Sbjct: 79 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKM 133
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 0.002
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 286 TILDIGCGYGSFGAHL--FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY 343
+LDIG G G + +E + + + + ++ LP+
Sbjct: 19 RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 344 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 403
P SFD++ C + + EV RVLK G F+ L E
Sbjct: 79 PDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLLVDHYAPEDPVLD--EFVNHL 135
Query: 404 NFVRD 408
N +RD
Sbjct: 136 NRLRD 140
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.1 bits (88), Expect = 0.002
Identities = 11/123 (8%), Positives = 33/123 (26%), Gaps = 1/123 (0%)
Query: 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 344
IL++G G G+ +++ + E ++ ++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 345 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN 404
+ D + ++ ++KPG + P + + +
Sbjct: 147 ADFISDQMYDAVIADIPDPWNHVQ-KIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205
Query: 405 FVR 407
+
Sbjct: 206 HLE 208
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 36.7 bits (84), Expect = 0.004
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 286 TILDIGCGYGSFG-----------AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG 334
+D+GCG G A + E ++ N + G +TL G
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG------ 89
Query: 335 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 394
+ + D+ G + + +L + LKPGG + T+ L +
Sbjct: 90 --DAPEALCKIPDIDIAVVGGSGGELQE----ILRIIKDKLKPGGRIIVTAILLETKFEA 143
Query: 395 RNKENQKRWNF 405
++
Sbjct: 144 MECLRDLGFDV 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 697 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.72 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.68 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.63 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.59 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.54 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.46 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.4 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.4 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.4 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.38 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.36 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.33 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.33 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.33 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.26 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.25 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.24 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.22 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.22 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.15 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.13 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.13 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.13 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.08 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.08 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.03 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.03 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.0 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.95 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.94 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.9 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.68 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.66 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.6 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.56 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.51 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.51 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.49 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.43 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.4 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.39 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.36 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.31 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.26 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.26 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.19 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.19 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.18 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.16 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.15 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.14 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.13 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.06 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.04 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.0 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.96 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.96 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.95 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.93 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.93 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.9 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.87 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.86 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.85 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.83 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.82 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.8 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.8 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.8 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.79 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.79 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.73 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.72 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.69 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.67 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.61 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.59 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.53 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.52 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.5 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.5 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.5 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.48 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.47 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.43 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.39 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.38 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.31 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.25 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.18 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.15 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.11 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 97.03 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.02 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.0 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 96.96 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.94 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.81 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.79 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.78 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.74 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.74 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.73 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.67 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.59 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.42 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.39 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.35 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.34 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.11 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.66 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 95.66 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.54 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 95.42 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.33 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 95.26 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.07 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 94.63 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 94.54 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 94.49 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.49 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 94.44 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.22 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.2 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.05 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 93.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.74 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 93.55 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.04 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 92.66 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.09 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 91.8 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.66 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.57 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 91.5 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 90.93 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.78 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.53 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 90.26 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.98 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 89.92 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.54 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 89.41 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 89.24 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 89.08 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 88.58 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 88.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 87.37 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 87.35 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 85.64 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 85.31 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.01 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.52 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 82.31 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.96 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 81.42 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.44 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.25 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=8.8e-18 Score=166.99 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=99.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
+..+.+.+.+.++++ .+|||||||+|.++..|++++ .+++|+|+|+.|++.|+++ ++ ++.+.++
T Consensus 3 ~~~~~l~~~~~~~~~--------~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~ 71 (234)
T d1xxla_ 3 HSLGLMIKTAECRAE--------HRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQG 71 (234)
T ss_dssp HHHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred hHHHHHHHHhCCCCC--------CEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccc
Confidence 344567777777776 899999999999999999885 4689999999999988654 43 4778899
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+|+++++||+|+|..+ ++|.+++..+|+++.|+|||||++++++...
T Consensus 72 d~~~~~~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 72 TAESLPFPDDSFDIITCRYA-AHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp BTTBCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccccccccccccceeeeece-eecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 99999999999999999998 7778899999999999999999999987643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=9.8e-18 Score=165.00 Aligned_cols=111 Identities=15% Similarity=0.282 Sum_probs=94.5
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeeccc
Q 005432 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASK 339 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~ 339 (697)
..+.+.+.++++ .+|||||||+|.++..+++++ .+++|+|+|+.|++.|+++ + .++.+.+++++
T Consensus 5 ~~ll~~~~l~~~--------~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~ 73 (231)
T d1vl5a_ 5 AKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE 73 (231)
T ss_dssp HHHHHHHTCCSC--------CEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHhcCCCCc--------CEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccccccccccccc
Confidence 345556665554 899999999999999999885 3689999999999988754 3 35678899999
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 340 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 340 ~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+|+++++||+|+|..+ ++|.+++..+|+++.|+|||||++++.++.
T Consensus 74 ~l~~~~~~fD~v~~~~~-l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIA-AHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp CCCSCTTCEEEEEEESC-GGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccccccccccc-ccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99999999999999998 777889999999999999999999998754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=9.7e-18 Score=165.56 Aligned_cols=101 Identities=21% Similarity=0.363 Sum_probs=90.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++... +..++++.+|+++++||+|+|....+||.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhh
Confidence 45789999999999999999885 46999999999999999987654 456899999999999999999765588889
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++..+|+++.|+|||||+++++.+.
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9999999999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=1.3e-16 Score=155.34 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=86.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
..+|||||||+|.++..+++.+ ..|+|+|+|+.|++.|+++ +..+.+.+.++..+|+++++||+|+|..+ ++
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~-l~ 113 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS-IV 113 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC-GG
T ss_pred CCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecc-hh
Confidence 4789999999999999999875 4689999999999888754 56677888899999999999999999998 55
Q ss_pred ccc--cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 360 WDQ--KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 360 ~~~--d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|.+ +..++|+++.++|||||++++..+.
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 543 5568999999999999999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.8e-16 Score=153.94 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=85.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccccH
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD 364 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~ 364 (697)
.+|||||||+|.++..+.+ ++|+|+|+.|++.|++++ +.+.+++++.+|+++++||+|+|..+ +++.+++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~-l~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTT-ICFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESC-GGGSSCH
T ss_pred CeEEEECCCCcccccccce-------EEEEeCChhhcccccccc--cccccccccccccccccccccccccc-ccccccc
Confidence 5899999999999988853 379999999999999875 56778899999999999999999998 6777889
Q ss_pred HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 365 GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 365 ~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..+|++++|+|||||.+++.++....
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccchhhhhhcCCCCceEEEEecCCcc
Confidence 99999999999999999999987654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.64 E-value=2.7e-16 Score=160.75 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=89.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
++.+|||||||+|.++..|+++. ...|+|+|+|+.|++.|+++ ++ .+.+.++++.++|+++++||+|+|..+
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence 45899999999999999999862 34689999999999888764 44 477889999999999999999999998
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+++.+++..+|+++.|+|||||+|++.++..
T Consensus 145 -l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 145 -FLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp -GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred -hhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 5666789999999999999999999988644
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.1e-16 Score=155.99 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~ 334 (697)
....+.+.+.+.+.++ .+|||||||+|.++..++++. ...++|+|+|+.|++.|+++ |+. +.+.
T Consensus 19 ~~~~~~l~~~~~l~pg--------~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~ 88 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFI 88 (245)
T ss_dssp HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHcCCCCC--------CEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhh
Confidence 4456667777777666 899999999999999998762 35789999999999888765 553 6788
Q ss_pred eecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 335 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 335 ~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+|+..+ +++++||+|+|..+ +++.+++..+|++++|+|||||++++.++.
T Consensus 89 ~~d~~~~-~~~~~fD~v~~~~~-~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 89 HNDAAGY-VANEKCDVAACVGA-TWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp ESCCTTC-CCSSCEEEEEEESC-GGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhHHhhc-cccCceeEEEEEeh-hhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 8898888 56789999999998 666778889999999999999999998864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.5e-15 Score=154.83 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=89.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..|++.+ ....++|+|+|+.|++.|+++..++.+.++|+..+|+++++||+|++..+ .++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~-- 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-PCK-- 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-CCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC-HHH--
Confidence 45799999999999999999884 44678999999999999999988899999999999999999999999877 332
Q ss_pred cHHHHHHHHHHhccCCeEEEEEeCCCChhh
Q 005432 363 KDGILLLEVDRVLKPGGYFVWTSPLTNPQA 392 (697)
Q Consensus 363 d~~~~L~El~RvLKPGG~Lvis~p~~~~~~ 392 (697)
+.|+.|+|||||+|++++|++....
T Consensus 160 -----~~e~~rvLkpgG~l~~~~p~~~~l~ 184 (268)
T d1p91a_ 160 -----AEELARVVKPGGWVITATPGPRHLM 184 (268)
T ss_dssp -----HHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred -----HHHHHHHhCCCcEEEEEeeCCcchH
Confidence 5789999999999999999876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=1.7e-15 Score=150.56 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=86.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+..+|||||||+|.++..|++++ .+++|+|+|+.|++.|+++ +.++.+.+++++++++++ +||+|+|....+
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~-~fD~I~~~~~~~ 116 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN-EFDAVTMFFSTI 116 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCS-CEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCccchhhcccc---eEEEEEeeccccccccccccccccccchheehhhhhccccc-ccchHhhhhhhh
Confidence 45789999999999999999986 3689999999999988765 667889999999999884 899999986545
Q ss_pred ccc--ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWD--QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~--~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++. ++..++|++++++|||||++++..++
T Consensus 117 ~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 555 34568999999999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.7e-15 Score=146.94 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=100.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-----CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-----~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|.++..+++.+. ..|+++|+|+.|++.|+++.. ...+.+++++.+++++++||+|+|..+
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~- 136 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV- 136 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC-
T ss_pred CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc-
Confidence 457899999999999999877643 469999999999999987632 346788999999999999999999998
Q ss_pred ccccccH--HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHH--hhhhhhhhhhhhhccceEEeee
Q 005432 358 VDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE--NQKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 358 lh~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e--~~~~W~~l~~la~~~~w~ll~~ 420 (697)
+++.+++ .++|++++++|||||.+++.++............ .....+.+..+.++.+++++..
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 5555554 4799999999999999999986543311111111 0112344566666777766543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=9.1e-15 Score=149.93 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=89.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
++.+|||||||+|.++..|++.......|+|+|+|+.+++.|+++ +.++.+.+.|+..+++++ +||+|+|..+ +
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~-l 104 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAF-L 104 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESC-G
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehh-h
Confidence 468999999999999999988633346799999999999998765 456778888999999864 7999999998 7
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+|.+++..+|+++.++|||||++++.++.
T Consensus 105 ~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 77889999999999999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=2.4e-14 Score=141.14 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g-~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+..+|||||||+|..+..|++.. .....|+|+|+|+.|++.|+++ +....+........+++.+.||+|+|+.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~- 117 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT- 117 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC-
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee-
Confidence 34789999999999999998752 2456899999999999999875 33333333333445556678999999988
Q ss_pred cccc--ccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 358 VDWD--QKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 358 lh~~--~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+|+. ++..++|++++|+|||||.|++.++...
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 5554 4667899999999999999999986543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.54 E-value=1.6e-14 Score=142.82 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=87.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+.+|||||||+|.++..|++.+ ..|+|+|+|+.+++.|+++.. ++.+..++.+.+++ +++||+|+|..+ ++|.+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~v-leh~~ 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHV-LEHID 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESC-GGGCS
T ss_pred CCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccce-eEecC
Confidence 4689999999999999999886 358999999999999988743 46677778888776 479999999998 77788
Q ss_pred cHHHHHHHHH-HhccCCeEEEEEeCCCCh
Q 005432 363 KDGILLLEVD-RVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 363 d~~~~L~El~-RvLKPGG~Lvis~p~~~~ 390 (697)
++..+|.++. |+|||||+++++.|....
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~ 124 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANA 124 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCccc
Confidence 9999999998 899999999999986543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=1.8e-14 Score=143.55 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=83.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.+.+|||||||+|.++..|++++. .++|+|+|+.|++.|+++ +.++.+.++|+..++++ ++||+|+|....+
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeee
Confidence 357899999999999999999864 589999999999998764 67888999999988875 5899999975435
Q ss_pred cccc---cHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQ---KDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~---d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++.. +...+|++++++|||||.|++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 4443 445799999999999999998765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.51 E-value=1.3e-14 Score=146.83 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=99.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccCCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
+..+|||+|||+|.++..|+..+. ..|+++|+|+.|++.|+++.. .+.+.+.+++.+++++++||+|+|..+ ++
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v-l~ 169 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT-AI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC-GG
T ss_pred CCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc-cc
Confidence 557999999999999999887643 368999999999999987632 246778899999999999999999999 55
Q ss_pred ccccH--HHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHh---hhhhhhhhhhhhccceEEeee
Q 005432 360 WDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQ 420 (697)
Q Consensus 360 ~~~d~--~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~---~~~W~~l~~la~~~~w~ll~~ 420 (697)
|.+++ ..+|++++++|||||+++|.++.........+.+. ....+.++.+.++.+++++..
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 55554 47899999999999999998865433211111111 112234555666667766543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.50 E-value=2.3e-14 Score=135.72 Aligned_cols=102 Identities=9% Similarity=-0.095 Sum_probs=81.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------------CCcEEEeecccCCC-CC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------------LPAMIGSFASKQLP-YP 344 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------------l~~~~~~~da~~LP-fp 344 (697)
++.+|||+|||+|..+.+|+++|+ +|+|+|+|+.|++.|+++. ....+...+...++ ..
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 348999999999999999999974 5899999999999998752 23356666776665 34
Q ss_pred CCCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 345 SLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 345 d~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+||+|++..++.+..+ +...+++++.++|||||++++....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 578999999988444432 2467999999999999998887654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=4.4e-14 Score=141.89 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCCCC-CCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPY-PSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~LPf-pd~sFDlV~~~~ 355 (697)
...+|||||||+|..+..+++.+. ..++|+|+|+.|++.|+++ + ..+.+.++|+...++ .+++||+|+|..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 347999999999999999988753 3689999999999999865 2 246677888877776 467899999999
Q ss_pred cccccccc---HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 356 CGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d---~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++|...+ ...++.++.++|||||+|+++.+.
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 85544333 347999999999999999998874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.46 E-value=1.8e-13 Score=132.23 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=81.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCccEEEecccccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~LPfpd~sFDlV~~~~~llh 359 (697)
.+|||||||+|..+..|++++. .++++|+|+.|++.++++ ++. +.+...|...+++ +++||+|+|..+ ++
T Consensus 32 grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~-~~ 106 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVV-MM 106 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESC-GG
T ss_pred CcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeee-ee
Confidence 5899999999999999999864 589999999999877643 554 4667778888876 579999999998 45
Q ss_pred cccc--HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 360 WDQK--DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 360 ~~~d--~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.++ ..++++++.++|+|||++++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4433 3579999999999999999987543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=5.7e-13 Score=128.84 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=93.2
Q ss_pred chhhhccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH
Q 005432 244 EEEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV 321 (697)
Q Consensus 244 d~~~~~F~~~~~~y--d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml 321 (697)
.+....|......| +......+.+.+.+...+ ..+|||||||+|.++..+++.+ .+++++|+|+.++
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~--------~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i 87 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--------DDDILDLGCGYGVIGIALADEV---KSTTMADINRRAI 87 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--------TCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCC--------CCeEEEEeecCChhHHHHHhhc---cccceeeeccccc
Confidence 34445565544444 222223344555554333 4899999999999999998874 3689999999999
Q ss_pred HHHHHc----CC---CcEEEeecccCCCCCCCCccEEEecccccccccc-HHHHHHHHHHhccCCeEEEEEeC
Q 005432 322 QLTLER----GL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 322 ~~A~er----gl---~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d-~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.|+++ ++ .+.+...|... ++++++||+|+|+.. +|...+ ...++.++.++|||||.+++...
T Consensus 88 ~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p-~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 88 KLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP-IRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC-STTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc-EEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 988753 33 35666667655 677889999999987 555444 36789999999999999988654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=3.8e-13 Score=139.09 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEee
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF 336 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~ 336 (697)
....+.+.+.+.+.++ .+|||||||.|.++.+++++ ....++|+++|+++++.++++ ++...+. .
T Consensus 47 ~~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~-~ 115 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPG--------MTLLDIGCGWGSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKE-V 115 (291)
T ss_dssp HHHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEE-E
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEecCcchHHHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhccchhhh-h
Confidence 3344555555555444 89999999999999999876 235789999999999877654 5543322 1
Q ss_pred cccCCCCCCCCccEEEeccccccccc--------cHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~--------d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
.....++++++||.|+|..++.|+.+ +...+++++.++|||||.+++.+....
T Consensus 116 ~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 116 RIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp EECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred hhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 22334566789999999999666643 246899999999999999999886543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.1e-13 Score=137.23 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=80.5
Q ss_pred CEEEEeCCCCchHHHHHhhc-----CCceeEEEEecCCHHHHHHHHHcC-----CC-c--EEEeeccc------CCCCCC
Q 005432 285 RTILDIGCGYGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLERG-----LP-A--MIGSFASK------QLPYPS 345 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~-----g~~~~sV~gvD~S~~ml~~A~erg-----l~-~--~~~~~da~------~LPfpd 345 (697)
.+|||||||+|.++..+++. ......++++|+|+.|++.|+++. ++ + .+...+.+ ..++++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 47999999999998887653 122456899999999999998752 11 1 22222222 245778
Q ss_pred CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 346 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 346 ~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
++||+|+|.++ +||.+++..+|++++++|+|||++++..+...
T Consensus 122 ~~fD~I~~~~~-l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 122 QKWDFIHMIQM-LYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp CCEEEEEEESC-GGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred CceeEEEEccc-eecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 99999999999 77788999999999999999999999887543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6e-13 Score=131.72 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-------------
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------- 328 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------- 328 (697)
...+.+.+.+.... +.+|||+|||+|..+.+|+++|+ +|+|+|+|+.+++.|+++.
T Consensus 32 ~l~~~~~~~l~~~~--------~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~ 100 (229)
T d2bzga1 32 LLKKHLDTFLKGKS--------GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIP 100 (229)
T ss_dssp HHHHHHHHHHTTCC--------SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTST
T ss_pred HHHHHHHHhcCCCC--------CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhccc
Confidence 33445555555433 37999999999999999999975 5899999999999887652
Q ss_pred ---------CCcEEEeecccCCC-CCCCCccEEEeccccccccc-cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 329 ---------LPAMIGSFASKQLP-YPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 329 ---------l~~~~~~~da~~LP-fpd~sFDlV~~~~~llh~~~-d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
..+.+.+.|...++ ...+.||+|+...++++..+ +...+++++.++|||||++++....
T Consensus 101 ~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 101 GTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp TCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 24456667766664 56789999999988555543 3467999999999999998887654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=6.9e-13 Score=136.32 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
++.+|||||||+|.++.+++++. ...|+++|+|+++++.|+++ ++... +...+...+ +++||.|++..+
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~ 126 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEA 126 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESC
T ss_pred CCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhH
Confidence 34899999999999999998772 35799999999999988765 44433 333343333 468999999999
Q ss_pred ccccc-ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 357 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 357 llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+.|+. .+...+++++.++|||||.+++.+...
T Consensus 127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 127 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence 66654 334789999999999999999987543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=4.4e-13 Score=137.28 Aligned_cols=115 Identities=17% Similarity=0.325 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-----c
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----A 331 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-----~ 331 (697)
..+.+.+.+.+.... ..+|||||||+|.++..|+++|. .|+|+|+|+.|++.|+++ +.. .
T Consensus 42 ~~~~~~l~~~l~~~~--------~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~ 110 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHG--------CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW 110 (292)
T ss_dssp HHHHHHHHHHHHHTT--------CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred HHHHHHHHHHhhhcC--------CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhccccccccee
Confidence 344555666665433 37999999999999999999863 589999999999998764 222 2
Q ss_pred EEEeeccc----CCCCCCCCccEEEeccccccccc-------cHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 332 MIGSFASK----QLPYPSLSFDMLHCARCGVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 332 ~~~~~da~----~LPfpd~sFDlV~~~~~llh~~~-------d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+..++.. .+|. .++||+|+|....+++.+ +...+|+++.|+|||||+|++...+
T Consensus 111 ~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 111 VIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 23333322 2333 468999999764454442 3457999999999999999997653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.3e-12 Score=134.58 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEe
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~ 335 (697)
...+.+.+.+.+.+ +.+|||||||.|.++.++++. ..+.|+|+++|+.+++.|+++ ++ .+.+..
T Consensus 49 ~k~~~~~~~l~l~~--------G~~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~ 118 (285)
T d1kpga_ 49 AKIDLALGKLGLQP--------GMTLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 118 (285)
T ss_dssp HHHHHHHTTTTCCT--------TCEEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred HHHHHHHHHcCCCC--------CCEEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444454444444 499999999999999998887 346899999999999988765 32 345666
Q ss_pred ecccCCCCCCCCccEEEecccccccc-ccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 336 FASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~llh~~-~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.|...++ ++||.|++..++.|+. .+...+++++.|+|||||.+++.+..
T Consensus 119 ~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 119 AGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 6766664 6899999999976664 34478999999999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.1e-12 Score=130.16 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeeccc--CCCCCCCCccEEEe----
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASK--QLPYPSLSFDMLHC---- 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~--~LPfpd~sFDlV~~---- 353 (697)
+.+|||||||+|..+..+++++ ..+++++|+|+.+++.|+++. ..+.+...++. ..++++++||.|+.
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 4799999999999999998874 457999999999999998763 23333333333 34678889999984
Q ss_pred -ccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 354 -ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 354 -~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
... +++..+...++++++|+|||||+|++..
T Consensus 132 ~~~~-~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEE-TWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGG-GTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccc-cccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 333 4445667889999999999999998854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.5e-13 Score=134.01 Aligned_cols=134 Identities=15% Similarity=0.021 Sum_probs=90.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCcE--------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAM-------------------------- 332 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~-------------------------- 332 (697)
++.+|||||||+|.++..++..+ ..+|+|+|+|+.|++.|+++. ....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45789999999999988887764 457999999999999987641 1100
Q ss_pred -----E----EeecccCCCCCCCCccEEEeccccccccc---cHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH---
Q 005432 333 -----I----GSFASKQLPYPSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--- 397 (697)
Q Consensus 333 -----~----~~~da~~LPfpd~sFDlV~~~~~llh~~~---d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~--- 397 (697)
. ...+....++++++||+|++.+++.|... +...+++++.|+|||||+|++.++...........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 0 01122234678899999999999554442 44579999999999999999998755321110000
Q ss_pred HhhhhhhhhhhhhhccceEEe
Q 005432 398 ENQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 398 e~~~~W~~l~~la~~~~w~ll 418 (697)
...-..+.++.+.++.+++++
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEE
Confidence 001123556666777777754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=2.7e-12 Score=123.30 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred ccccccccc-chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-
Q 005432 250 FRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER- 327 (697)
Q Consensus 250 F~~~~~~yd-~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er- 327 (697)
|.+.+..+. ...+....+...+...++ .+|||||||+|.++..+++.+ .+|+++|.++.+++.|+++
T Consensus 7 f~~~~~~~~~t~~eir~~il~~l~~~~g--------~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~ 75 (186)
T d1l3ia_ 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKN--------DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNL 75 (186)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHH
T ss_pred hccCCCCCCCChHHHHHHHHHhcCCCCC--------CEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHH
Confidence 444444442 223344455555555444 899999999999999998764 4689999999999988764
Q ss_pred ---CC--CcEEEeecccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 328 ---GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 328 ---gl--~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++ ++.+.++++..++++...||+|++.... .+...++.++.+.|||||++++....
T Consensus 76 ~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 76 QRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp HHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred HHcCCCcceEEEECchhhcccccCCcCEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEeec
Confidence 44 5677888888888888899999998762 23567999999999999999998763
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=1.2e-12 Score=132.95 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
++.+|||+|||+|.++..+++.| .+|+++|+|+.|++.|++ .+++..+.+++... .+++++||+|+++.. .
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~-~ 194 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-A 194 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-H
T ss_pred ccCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccc-c
Confidence 45899999999999999998876 358999999999988875 36777777776554 356789999998754 2
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ ....++.++.++|||||+|++++..
T Consensus 195 ~---~l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 195 E---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp H---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c---cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 2457889999999999999999764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=6.8e-12 Score=125.31 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=91.9
Q ss_pred ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCC-CCCCCCccEEEeccc
Q 005432 281 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQL-PYPSLSFDMLHCARC 356 (697)
Q Consensus 281 ~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~L-Pfpd~sFDlV~~~~~ 356 (697)
..++.+|||||||+|.++.++++.+ ....|+|+|+|+.|++.++++. .+......+.... ++.+..||++++...
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence 3456899999999999999999874 4568999999999999887652 2333444444333 356677888776655
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhHHhhhhhhhhhhhhhccceEEee
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 419 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~l~~la~~~~w~ll~ 419 (697)
+++.++...++.++.++|||||++++++........ .......+......+..+++.+.
T Consensus 151 -~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~---~~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 151 -VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT---KDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp -CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS---SCHHHHHHHHHHHHHHHTEEEEE
T ss_pred -ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC---CCHHHHHHHHHHHHHHcCCEEEE
Confidence 566677788999999999999999998643211100 01112233344455566776654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.26 E-value=1.3e-11 Score=123.95 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+.++|||||||+|.++..++++. +...++++|. +.+++.++++ ++ .+.+..+|... +.+ .+||+|++..+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeeccc
Confidence 45799999999999999999874 4567889998 4577666543 43 35666666543 233 57999999999
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 357 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+++|.+.. ..+|++++++|||||+|+|.+....
T Consensus 156 lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 156 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDL 189 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred cccCCchhhHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 55554222 4789999999999999999886543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=8.6e-12 Score=122.75 Aligned_cols=104 Identities=18% Similarity=0.047 Sum_probs=78.0
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 282 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 282 ~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
.++.+|||||||+|..+.++++.. ....|+|+|+|+.|++.|+++ .-++.+...++...+.....+|.+.+.+..+
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 456899999999999999999873 345799999999999877643 2356666777776655555555554332224
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++..+...++.+++++|||||++++.+.
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 4455677899999999999999999864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=1.3e-11 Score=125.71 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=90.7
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--------CCCcEEEee
Q 005432 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------GLPAMIGSF 336 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er--------gl~~~~~~~ 336 (697)
..+...+...++ .+|||+|||+|.++..|++.-.+...++++|.++++++.|+++ ..++.+.+.
T Consensus 86 s~Ii~~l~i~PG--------~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 86 AQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp HHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred HHHHHHhCCCCC--------CEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 355566666665 8999999999999999998733456799999999999998763 135667888
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
|....++++++||.|++. .+++..++.++.++|||||.+++..|+.
T Consensus 158 d~~~~~~~~~~fDaV~ld------lp~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVLD------MLAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CGGGCCCCTTCEEEEEEE------SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccccccCCCcceEEEe------cCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 888899999999999853 3677789999999999999999988854
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=1.1e-11 Score=121.99 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=84.2
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 336 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~ 336 (697)
.....+.+.+..+++ .+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ ++.+.+.
T Consensus 62 ~~~a~~l~~l~l~~g--------~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~ 133 (213)
T d1dl5a1 62 SLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (213)
T ss_dssp HHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhHHHHHhhhcccc--------ceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC
Confidence 344456666666555 8999999999999999988643456799999999999998765 33 4556677
Q ss_pred cccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 337 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 337 da~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+....++.+++||+|++..+ .++.+ .++.+.|||||.+++..
T Consensus 134 d~~~~~~~~~~fD~I~~~~~-~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 134 DGYYGVPEFSPYDVIFVTVG-VDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCGGGCCEEEEEECSB-BSCCC------HHHHHHEEEEEEEEEEB
T ss_pred chHHccccccchhhhhhhcc-HHHhH------HHHHHhcCCCcEEEEEE
Confidence 88777777889999999987 44332 25678899999998854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=1.6e-11 Score=120.53 Aligned_cols=99 Identities=13% Similarity=0.214 Sum_probs=82.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccCCC--CCCCCccEEEecccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~LP--fpd~sFDlV~~~~~l 357 (697)
..|||||||+|.++..+++.. +...++|+|+++.++..|.+ .++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 479999999999999999884 56789999999999977654 355 4778888888776 88999999998877
Q ss_pred ccccccH--------HHHHHHHHHhccCCeEEEEEe
Q 005432 358 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~~~d~--------~~~L~El~RvLKPGG~Lvis~ 385 (697)
..|.... ..+|.+++|+|||||.|.|.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6655432 379999999999999999875
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.15 E-value=9.4e-11 Score=118.24 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
+.++|||||||+|.++..++++. +..+++++|. +.+++.++++ ++. +.+...+... +.+ .+||+|++.++
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 45799999999999999999873 5678899997 6677766543 433 4445445432 444 46999999999
Q ss_pred cccccccH-HHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~-~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+++|.+.. .++|++++++|||||.|+|.+..
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 66665322 46899999999999999998864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3.1e-11 Score=122.01 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=87.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CC--c---------------------------
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP--A--------------------------- 331 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~--~--------------------------- 331 (697)
.+.+|||||||+|.++...+... ..+|+++|.|+.|++.+++.- .+ .
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 56899999999998876666553 347999999999999887531 00 0
Q ss_pred ----EEEeecc------cCCCCCCCCccEEEecccccccccc---HHHHHHHHHHhccCCeEEEEEeCCCChhhhhhhH-
Q 005432 332 ----MIGSFAS------KQLPYPSLSFDMLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK- 397 (697)
Q Consensus 332 ----~~~~~da------~~LPfpd~sFDlV~~~~~llh~~~d---~~~~L~El~RvLKPGG~Lvis~p~~~~~~~lr~~- 397 (697)
.+...|. ...+++.++||+|+|.+++.+..++ ...+++++.++|||||+|++.++...........
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 0111122 1233556789999999995554444 4679999999999999999988754321110000
Q ss_pred --HhhhhhhhhhhhhhccceEEe
Q 005432 398 --ENQKRWNFVRDFVENLCWELV 418 (697)
Q Consensus 398 --e~~~~W~~l~~la~~~~w~ll 418 (697)
...-..+.++...+..+++.+
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEE
Confidence 011233556666777777664
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.13 E-value=1.1e-10 Score=114.28 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=81.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccCCC--CCCCCccEEEecccc
Q 005432 285 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 357 (697)
Q Consensus 285 ~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~LP--fpd~sFDlV~~~~~l 357 (697)
..|||||||+|.++..+++.. +...++|+|+++.++..|.+ .++ ++.+..+++..+. ++++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 579999999999999999874 56789999999999887754 355 4677788887775 78899999998876
Q ss_pred ccccccH--------HHHHHHHHHhccCCeEEEEEe
Q 005432 358 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh~~~d~--------~~~L~El~RvLKPGG~Lvis~ 385 (697)
..|.... ..+|.++.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6665332 479999999999999999865
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.6e-11 Score=126.89 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=90.5
Q ss_pred cccc-chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------
Q 005432 255 LIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------ 327 (697)
Q Consensus 255 ~~yd-~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er------ 327 (697)
..|. ........+.+.+.+.++ .+|||||||+|.++..+++.. ....++|+|+++.+++.|++.
T Consensus 130 ~~~~e~~~~~~~~~~~~~~l~~~--------~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~ 200 (328)
T d1nw3a_ 130 EVYGETSFDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRK 200 (328)
T ss_dssp TCCCCCCHHHHHHHHHHSCCCTT--------CEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHcCCCCC--------CEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3453 334555566666655554 899999999999999988752 345689999999999887642
Q ss_pred --------CCCcEEEeecccCCCCCCCCc--cEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 328 --------GLPAMIGSFASKQLPYPSLSF--DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 328 --------gl~~~~~~~da~~LPfpd~sF--DlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..++.+.++|+..+++.+..| |+|+++. +.+.++...+|.|+.|+|||||.++...+
T Consensus 201 ~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 201 WMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp HHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred HhhhccccCCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 235778889999888877666 5666653 33456778899999999999999988654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.13 E-value=7.2e-11 Score=119.31 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||+|||+|.++..|++.-.....|+++|.++++++.|+++ + -++.+...|.... +++++||+|++.
T Consensus 86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld--- 161 (250)
T d1yb2a1 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD--- 161 (250)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC---
T ss_pred cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec---
Confidence 38999999999999999987632446799999999999999864 1 2456676776655 567899999864
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.+++..++.++.++|||||+|++..|..
T Consensus 162 ---~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 162 ---IPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp ---CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ---CCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 2456689999999999999999988853
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=2.1e-10 Score=119.42 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC--CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL--PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl--~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
+.+|||||||+|.++..+++.|. ..|+++|.++ +++.|+ +.+. .+.+...+...+++++++||+|++..+.
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga--~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 37999999999999999998864 3689999996 444443 3343 4667788999999999999999997553
Q ss_pred cc--ccccHHHHHHHHHHhccCCeEEE
Q 005432 358 VD--WDQKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 358 lh--~~~d~~~~L~El~RvLKPGG~Lv 382 (697)
.. .......++.++.|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 22 22445778999999999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.3e-10 Score=115.21 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C------CCcEEEeecccCCCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g------l~~~~~~~da~~LPfpd~sFDlV~ 352 (697)
++.+|||||||+|..++.|++.......|+++|.++++++.|+++ + ..+.+..+|....+.++++||+|+
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 348999999999999999987633456799999999999888643 2 245567778888888888999999
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..+ .+..+ .++.+.|||||++++...
T Consensus 156 ~~~~-~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 156 VGAA-APVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ECSB-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhcc-hhhcC------HHHHhhcCCCcEEEEEEc
Confidence 9987 44332 357889999999998654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.05 E-value=2.8e-10 Score=113.28 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=77.2
Q ss_pred ccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--C-CCcEEEeeccc---CCCCCCCCccEEEec
Q 005432 281 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--G-LPAMIGSFASK---QLPYPSLSFDMLHCA 354 (697)
Q Consensus 281 ~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er--g-l~~~~~~~da~---~LPfpd~sFDlV~~~ 354 (697)
..++.+|||+|||+|.++.+|++.-.....|+++|+++.|++.++++ . ........++. ..+.....+|+|++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence 34669999999999999999998733456799999999999888654 2 22333444432 334455689998875
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+++.++...++.++.++|||||+++++..
T Consensus 151 ---~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 151 ---VAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp ---CCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---ccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 33345667899999999999999999864
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.7e-10 Score=116.48 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH---HcCC--CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~---ergl--~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|||||||+|.++..+++.|. ..|+++|.|+.+...++ +.+. .+.+...+..++++++++||+|+|.....
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 47899999999999999999864 46899999998764332 3333 46678889999999999999999975533
Q ss_pred ccc--ccHHHHHHHHHHhccCCeEEEE
Q 005432 359 DWD--QKDGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 359 h~~--~d~~~~L~El~RvLKPGG~Lvi 383 (697)
+.. ...+.++....++|||||+++-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 222 2235678888999999999873
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=6e-10 Score=113.31 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=82.6
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 005432 266 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 339 (697)
Q Consensus 266 ~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 339 (697)
.+...+.+.++ .+|||+|||+|.++..|++.......++++|.++++++.|+++ ++ .+.+...|.
T Consensus 94 ~Ii~~l~i~pG--------~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~- 164 (266)
T d1o54a_ 94 FIAMMLDVKEG--------DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI- 164 (266)
T ss_dssp HHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-
T ss_pred HHHHhhCCCCC--------CEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-
Confidence 45566666665 8999999999999999998744556899999999999998764 33 223333342
Q ss_pred CCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 340 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 340 ~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
...++...||.|+.. .+++..+|.++.++|||||.+++..|..
T Consensus 165 ~~~~~~~~~D~V~~d------~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 165 SEGFDEKDVDALFLD------VPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp GGCCSCCSEEEEEEC------CSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cccccccceeeeEec------CCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 234667789998642 3677789999999999999999988853
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=5e-10 Score=116.03 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCC--CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl--~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
+++|||||||+|.++..+++.|. ..|+++|.++.+... ++..+. .+.+...++..++++.++||+|++.....
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 47899999999999999999863 368999999755322 223344 36678889999999999999999975522
Q ss_pred ccc--ccHHHHHHHHHHhccCCeEEE
Q 005432 359 DWD--QKDGILLLEVDRVLKPGGYFV 382 (697)
Q Consensus 359 h~~--~d~~~~L~El~RvLKPGG~Lv 382 (697)
... .....++..+.|+|||||.++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 222 345789999999999999987
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.95 E-value=1.2e-09 Score=108.38 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=77.6
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCC
Q 005432 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQL 341 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~L 341 (697)
..+.+.+.+.++ .+|||||||+|.+++.|++.+ .+|+++|.++.+++.|+++ ..++.+..+|....
T Consensus 60 a~ml~~L~l~~g--------~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 60 IFMLDELDLHKG--------QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG 128 (224)
T ss_dssp HHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred HHHHHHhhhccc--------ceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence 345555555554 899999999999999998874 4689999999999988765 34566777776555
Q ss_pred CCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEE
Q 005432 342 PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 342 Pfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis 384 (697)
..+.++||.|++..+ .+..+ ..+.+.|||||+|++-
T Consensus 129 ~~~~~pfD~Iiv~~a-~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWAT-APTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCEEEEEESSB-BSSCC------HHHHHTEEEEEEEEEE
T ss_pred chhhhhHHHHHhhcc-hhhhh------HHHHHhcCCCCEEEEE
Confidence 445678999999877 44332 3456789999999984
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=9.8e-10 Score=114.78 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=80.9
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------------
Q 005432 265 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------- 328 (697)
Q Consensus 265 ~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------- 328 (697)
..+..++.+.++ .+|||+|||+|.++..|++.-.....|+++|.++++++.|+++-
T Consensus 88 ~~Il~~l~i~pG--------~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 88 NMILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp HHHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred HHHHHHhCCCCC--------CEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 355566666666 89999999999999999986334567999999999999987531
Q ss_pred CCcEEEeecccCCC--CCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 329 LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 329 l~~~~~~~da~~LP--fpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.++.+...|..... +++.+||.|++- .+++..++.++.++|||||.|++..|..
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~LD------~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVALD------MLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEEC------SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cceeEEecchhhcccccCCCCcceEeec------CcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 23456666655543 467789999852 2456679999999999999999988754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1e-09 Score=117.82 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=83.8
Q ss_pred ccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----
Q 005432 255 LIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----- 328 (697)
Q Consensus 255 ~~y-d~~~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----- 328 (697)
..| +-...++..+.+.+.+.++ ++|||||||+|.++..++... ....++|+|+++.|++.|+++.
T Consensus 195 ~vYGEl~~~~i~~Il~~l~Lkpg--------d~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~ 265 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKK 265 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTCCTT--------CEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCCCCC--------CEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhh
Confidence 345 3346667777777777666 899999999999999998762 2346899999999999887542
Q ss_pred ------C---CcEE-EeecccCCCCCC---CCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 329 ------L---PAMI-GSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 329 ------l---~~~~-~~~da~~LPfpd---~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ...+ ...+....++.+ ..+|+|+++. +.+.++...+|.++.|+|||||.++.++.
T Consensus 266 ~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 266 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp HHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred hhhhhccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 1 1111 111211111111 2467888764 34567778899999999999999998764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.68 E-value=1.6e-08 Score=99.99 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhc----C-CceeEEEEecCCHHHHHHHHHc----------CCCcEEEeecccCCCCCCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSK----E-LLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQLPYPSLS 347 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~----g-~~~~sV~gvD~S~~ml~~A~er----------gl~~~~~~~da~~LPfpd~s 347 (697)
+..+|||||||+|.+++.|++. | ....+|+++|.++++++.|+++ ..++.+...|......+.+.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 159 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 159 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence 3489999999999999888765 1 1224689999999999888653 12566777887777677789
Q ss_pred ccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 348 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 348 FDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
||.|++..+ ....+ ..+.+.|||||++++-..
T Consensus 160 fD~Iiv~~a-~~~~p------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 160 YNAIHVGAA-APDTP------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp EEEEEECSC-BSSCC------HHHHHTEEEEEEEEEEES
T ss_pred eeeEEEEee-chhch------HHHHHhcCCCcEEEEEEe
Confidence 999999877 44332 246789999999988543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=3e-08 Score=97.60 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=80.0
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeec
Q 005432 263 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFA 337 (697)
Q Consensus 263 y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~d 337 (697)
....+.+.+...++ .+|||||||+|..++.|++.- ...|+++|.++.+++.|+++ + .++.+..+|
T Consensus 66 ~~a~ml~~L~l~~g--------~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd 135 (215)
T d1jg1a_ 66 MVAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 135 (215)
T ss_dssp HHHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred hHHHHHHhhccCcc--------ceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence 34556666666655 899999999999999998761 23589999999999888754 3 456778888
Q ss_pred ccCCCCCCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 338 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 338 a~~LPfpd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
......+.+.||.|++..+ ....+ .. +...|||||++++-.
T Consensus 136 ~~~g~~~~~pfD~Iiv~~a-~~~ip--~~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 136 GSKGFPPKAPYDVIIVTAG-APKIP--EP----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp GGGCCGGGCCEEEEEECSB-BSSCC--HH----HHHTEEEEEEEEEEE
T ss_pred cccCCcccCcceeEEeecc-cccCC--HH----HHHhcCCCCEEEEEE
Confidence 7776666789999999877 44332 22 456799999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.1e-07 Score=96.76 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCccEEEecccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 357 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~LPfpd~sFDlV~~~~~l 357 (697)
...+|||+|||+|..+..++... +...++++|+|+.+++.|++. ++ ++.+...|... ++++++||+|+|+--.
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred cccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 45689999999999999998763 567899999999999888754 55 46677666433 4567799999998442
Q ss_pred cc------------ccc------------cHHHHHHHHHHhccCCeEEEEEe
Q 005432 358 VD------------WDQ------------KDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 358 lh------------~~~------------d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+. +.+ ....++.+..+.|+|||.+++..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 100 11357889999999999999964
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.56 E-value=1.8e-07 Score=89.96 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchH----HHHHhhc---CCceeEEEEecCCHHHHHHHHHc--------CCCc----------------
Q 005432 283 GVRTILDIGCGYGSF----GAHLFSK---ELLTMCIANYEASGSQVQLTLER--------GLPA---------------- 331 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~----a~~La~~---g~~~~sV~gvD~S~~ml~~A~er--------gl~~---------------- 331 (697)
..-+|+++|||+|.- +..+.+. ......|+|+|+++.+++.|++- .++.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 346899999999973 3333332 11246799999999999998742 1110
Q ss_pred ------------EEEeeccc-CCCCCCCCccEEEeccccccccccH-HHHHHHHHHhccCCeEEEEE
Q 005432 332 ------------MIGSFASK-QLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 384 (697)
Q Consensus 332 ------------~~~~~da~-~LPfpd~sFDlV~~~~~llh~~~d~-~~~L~El~RvLKPGG~Lvis 384 (697)
.+...+.. ..+.+.+.||+|+|.++++++.+.. .++++.+++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01111111 1223457899999999966655333 57999999999999999885
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=5.4e-08 Score=100.90 Aligned_cols=102 Identities=19% Similarity=0.130 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
+.+|||++||+|.++..++.. ..+|+++|.|+.+++.|++. |+ ++.+..+|+.. ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 489999999999999998754 46799999999999888753 55 45666666543 34456799999986
Q ss_pred ccccccc--------ccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 355 RCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 355 ~~llh~~--------~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.-..... .+...++..+.++|||||.|++++-..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4212111 112357888999999999999987643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=3.1e-07 Score=92.62 Aligned_cols=96 Identities=9% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||+|||+|.++..+++++ ...|+++|+++.+++.+++. ++ .+.+.++|+..++. .+.||.|++...
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 34899999999999999999885 34799999999999887653 44 35667788877754 468999987632
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+....++.++.++|+|||++.+...
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEec
Confidence 2234688889999999999977654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.49 E-value=2.3e-07 Score=90.02 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||+|||+|.++..++..|. ..|+++|+++.+++.|++....+.+.+.|...++ +.||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence 458999999999999988888763 4699999999999999988777888888887764 68999999844
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=2.7e-08 Score=95.33 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=70.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCCC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 626 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~~ 626 (697)
.|||+|||.|.|+.+|.. + +-+|-. ..+..+-+|++ -++....+.++..+.+||+|+|..++.+..
T Consensus 39 ~vLDiGcG~G~~~~~~~~----~-----~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~--- 105 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI----K-----IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD--- 105 (208)
T ss_dssp CEEEETCTTSTTHHHHTC----C-----EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---
T ss_pred eEEEECCCCcccccccce----E-----EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---
Confidence 599999999999999853 2 233443 77888888875 345556667777679999999999988765
Q ss_pred CCCCcchhhhhhcccccCCcEEEEEc
Q 005432 627 HRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 627 ~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+...+|-|+-|+|+|||.+++.+
T Consensus 106 ---d~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 106 ---DPERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---ccccchhhhhhcCCCCceEEEEe
Confidence 25678999999999999999863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.43 E-value=2.6e-07 Score=95.78 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC----CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ----LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~----LPfpd~sFDlV~ 352 (697)
++.+|||+|||+|.++..++..|. .+|+++|.++.+++.|++. |+ .+.+.++|+.. ++..+.+||+|+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 347999999999999999998863 4799999999999888653 44 34566666533 334567999999
Q ss_pred ecccccccc-c-------cHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWD-Q-------KDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~-~-------d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+..-...-. . +...++..+.++|||||.|+++....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 864312111 1 12347888899999999999987644
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.40 E-value=3.1e-07 Score=86.69 Aligned_cols=98 Identities=21% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccC----CCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ----LPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~----LPfpd~sFDlV~~~ 354 (697)
.+.+|||+|||+|.++..++.+|. +++++|.++.+++.+++. ++...+...++.. ......+||+|++.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 347999999999999999988863 467899999999887643 5655555444332 23455789999987
Q ss_pred cccccccccHHHHHHHH--HHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El--~RvLKPGG~Lvis~p 386 (697)
-- ++. +....+.++ ..+|+|||++++..+
T Consensus 118 PP-Y~~--~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PP-YAM--DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CC-TTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cc-ccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 43 332 222344444 357999999998654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=3.7e-07 Score=88.04 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=84.4
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecc
Q 005432 263 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFAS 338 (697)
Q Consensus 263 y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da 338 (697)
..+++.+.+...++ ..+||++||+|..+..++++. +...++++|.++.|++.|+++ +..+.+...+.
T Consensus 11 ll~evi~~l~~~~~--------~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f 81 (192)
T d1m6ya2 11 MVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY 81 (192)
T ss_dssp THHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG
T ss_pred HHHHHHHhhCCCCC--------CEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHH
Confidence 44556666655444 899999999999999999874 457899999999999999876 33456666655
Q ss_pred cCCC-----CCCCCccEEEecccc--cc------ccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 339 KQLP-----YPSLSFDMLHCARCG--VD------WDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 339 ~~LP-----fpd~sFDlV~~~~~l--lh------~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
..+. +..++||.|+.-... .+ -.......|..+.++|+|||.+++...
T Consensus 82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 4432 446789999865331 11 112234689999999999999998775
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.36 E-value=2.4e-07 Score=92.52 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +...++..|.. ..++.+.. .-.+.+..+|..+ +.| ..|++++..++++|.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIENAPP-LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTCCC-CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhhccCC-CCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 45899999999999999999884 56778899984 34432221 1245555556432 344 3599999999777764
Q ss_pred cH-HHHHHHHHHhccCCeEEEEEeCC
Q 005432 363 KD-GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d~-~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+. ..+|+++++.|+|||.++|.+..
T Consensus 155 e~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 155 EKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 33 47899999999999999998853
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.31 E-value=8.6e-08 Score=92.75 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=63.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhH----hccCc--ccccccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i----~~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||+|||.|.|+.+|.+.... |+=+|-. +.+..+ -+.|+ +-.++.=.+.+|.=+.+||+|+|..++.
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~~-----v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVKK-----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 92 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSSE-----EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred EEEEecccCcHHHHHHHHhCCE-----EEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999874433 2222322 334332 23344 2333333344442238999999999887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.. +...+|-|+.|+|+|||++++.+
T Consensus 93 ~~~------d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 93 HFP------NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 653 45678999999999999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.30 E-value=3.9e-07 Score=84.12 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LPfpd~sFDlV~~~~ 355 (697)
.+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.+++. ++ ...+...|+.. +....++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 357999999999999999988874 4799999999999877653 33 24556666554 345678999999863
Q ss_pred ccccccccHHHHHHHHH--HhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~--RvLKPGG~Lvis~p 386 (697)
- +. .......+..+. ++|+|||.+++...
T Consensus 92 P-y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 P-YA-KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S-SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h-hc-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 11 112234555553 57999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=1.9e-06 Score=83.28 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEeccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~~~ 356 (697)
.+.+|||+|||+|.++..++.+|. ..|+++|+++.+++.|++. +....+...+...+ ++.||+|+++--
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPP 118 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCc
Confidence 347999999999999998888763 4689999999999988764 55667777776655 467999999865
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.26 E-value=1.1e-07 Score=95.88 Aligned_cols=95 Identities=23% Similarity=0.352 Sum_probs=64.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---ccc-ccccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVL-HDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~-~~~~e~f~typrtyDl~H~~~ 617 (697)
-.|||+|||.|+++..|.+. ... +|+-+|-. .++..+-+ .||- -+. .|++ .+|.=+.+||+|.|..
T Consensus 69 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCcHHHhhhhcc-CCc---EEEEEeccchhhhhhhcccccccccccccccccccc-cccccccccchhhccc
Confidence 48999999999999999862 222 23333432 44444443 3552 222 3333 2343248999999998
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+|.+.. +...+|-|+.|+|||||.+++.+
T Consensus 144 ~l~h~~------d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 144 AFLHSP------DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp CGGGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcc------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 887664 24578999999999999999863
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.19 E-value=7.3e-07 Score=92.29 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccC----CCCCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ----LPYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~----LPfpd~sFDlV~ 352 (697)
+++|||+.||+|.++..++..| ..+|+++|.|+.+++.+++. ++ .+.+..+|+.. +.-..+.||+|+
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4899999999999999888765 34689999999999887753 44 35566666532 223456899999
Q ss_pred eccccc--------cccccHHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~ll--------h~~~d~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+---.+ ....+...++..+.++|+|||.|+++.-..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 853211 111223468888999999999999988643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.19 E-value=1.4e-06 Score=85.11 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-----CCCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-P-----fpd~sFDl 350 (697)
++++|||||||+|..+..|++.-.....++++|.++.+++.|++. |+ .+.+..+++... + +..++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 358999999999999999987532346799999999999888642 54 355665554432 2 45578999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
|+.-.. .. .......+.+..++|||||++++.+.
T Consensus 136 ifiD~~-~~-~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 136 VFLDHW-KD-RYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEECSC-GG-GHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeeccc-cc-ccccHHHHHHHhCccCCCcEEEEeCc
Confidence 997643 11 11123467888899999998877654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.18 E-value=2.5e-07 Score=94.15 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=71.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh----hHhccCcccccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~----~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
-.|||+|||.|+|+..+.+. .++-|.-|.... +++. .+.+.|+.......+.-+...|.+||.|-+..+|.+.
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~-~g~~v~gi~ls~--~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVER-FDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHH-HCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEecCCchHHHHHHHHh-CceeEEEecchH--HHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 36999999999999988762 344443333222 4444 4555688666655555566667899999999998876
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
. + =....++-++.|+|+|||.++|.+
T Consensus 131 ~---~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 131 G---H-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp C---G-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred h---h-hhHHHHHHHHHhccCCCceEEEEE
Confidence 4 2 245678999999999999999863
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=4.3e-07 Score=88.63 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCc--ccccccccccCCCCCCccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGl--ig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
.|||+|||.|.++..|.+... +|+=+|-. +.|..+- ++|+ +-.+..=.+.+|.=..+||+|.|.+++.
T Consensus 19 rILDiGcGtG~~~~~la~~~~-----~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred EEEEeCCcCcHHHHHHHHhCC-----eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceee
Confidence 489999999999999987322 45555544 5555443 3444 3333322344442238999999998887
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+.. +...+|=|+.|+|||||++++.+
T Consensus 94 ~~~------d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 94 HFS------DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc------CHHHHHHHHHHeeCCCcEEEEEE
Confidence 543 46789999999999999999853
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=4.9e-07 Score=88.96 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=66.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhc----cCcc----cccccccccCCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~----RGli----g~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.|||+|||.|+++.+|.+. .+.-|.-|=+. +..+..+-+ .|+- -+..|+.+.++ +.+||+|+|..++
T Consensus 36 ~VLDiGCG~G~~~~~la~~-~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~ 110 (245)
T d1nkva_ 36 RILDLGSGSGEMLCTWARD-HGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--NEKCDVAACVGAT 110 (245)
T ss_dssp EEEEETCTTCHHHHHHHHH-TCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--SSCEEEEEEESCG
T ss_pred EEEEEcCCCCHHHHHHHHh-cCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhccc--cCceeEEEEEehh
Confidence 6999999999999998862 45555444332 244544434 3652 23445555433 5899999999888
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.+.. +...+|-||-|+|||||.+++.+
T Consensus 111 ~~~~------d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 111 WIAG------GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGTS------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hccC------CHHHHHHHHHHHcCcCcEEEEEe
Confidence 7664 35679999999999999999964
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=1.9e-06 Score=85.78 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +..+++..|.. ..++.+.. ...+.+..+|... +.+ .+|++++.+++++|.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTD 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred CceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCCh
Confidence 45789999999999999999884 55788999984 44444322 2356666666543 333 5799999999777764
Q ss_pred cH-HHHHHHHHHhccCC---eEEEEEeCC
Q 005432 363 KD-GILLLEVDRVLKPG---GYFVWTSPL 387 (697)
Q Consensus 363 d~-~~~L~El~RvLKPG---G~Lvis~p~ 387 (697)
+. .++|+.+++.|+|| |.++|.+..
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 43 47999999999998 778887753
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.1e-07 Score=86.12 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=78.7
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc--ccccc-cccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl--ig~~~-~~~e~f~typrtyDl~H~~~ 617 (697)
-..|||+|||.|.++..|++. ..- .|+=+|-. +.|..+-++ |. +-.++ |. +.++.-+.+||+|.+..
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~-~~~---~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLP-LFR---EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTT-TCS---EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEES
T ss_pred CCEEEEeccCCCHhhHHHHHh-cCC---EEEEeecCHHHhhccccccccccccccccccccc-ccccccccccccccccc
Confidence 467999999999999988752 221 23333433 555544333 32 11111 22 23444358999999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---------------HHHHHHHHHHhhcCceeEEee
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~~~~~~~~~~W~~~~~~ 675 (697)
++.+.. +. .+..+|-|+=|+|+|||++++.|.. ...++++++.+.--+++.-.+
T Consensus 136 ~l~h~~---~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 136 VIGHLT---DQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp CGGGSC---HH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccccch---hh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 988764 21 2446899999999999999986321 136778888888888766554
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.13 E-value=3.1e-06 Score=87.20 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC----CCCCCCccEEE
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL----PYPSLSFDMLH 352 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L----Pfpd~sFDlV~ 352 (697)
+.+|||+.||+|.++..++..| .+|+++|.|+.+++.|++. ++ ++.+.+.|+... ....+.||+|+
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 4799999999999999999876 3689999999999988753 33 356776765432 12357899999
Q ss_pred eccccc-------cc--cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGV-------DW--DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~ll-------h~--~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+.--.+ .+ ..+...++..+.++|+|||.+++...
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 852211 11 12234567778899999997666543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5.8e-06 Score=81.01 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-----CCCCCccE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDM 350 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-LP-----fpd~sFDl 350 (697)
++++|||||||+|..+..+++.-.....++.+|.++...+.|++. |+ .+.+..+++.. ++ ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 358999999999999999987632346799999999998888753 43 34455555432 21 34578999
Q ss_pred EEeccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 351 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 351 V~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
|+.-.- .......+..+.+.|+|||.+++.+..
T Consensus 139 ifiD~d----k~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 139 AVVDAD----KENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EEEeCC----HHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 997633 344567889999999999999997653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.04 E-value=1.2e-06 Score=85.25 Aligned_cols=92 Identities=21% Similarity=0.335 Sum_probs=62.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc---CcccccccccccCCCCCCccccccccCccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R---Glig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
+|||+|||.|.|+..|.+....|..+...| +.+..+-+| ++-=+..+. +.++ .|.+||+|.|.++|.+..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s~----~~i~~a~~~~~~~~~~~~~~~-~~~~-~~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEASE----EAISHAQGRLKDGITYIHSRF-EDAQ-LPRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESCH----HHHHHHHHHSCSCEEEEESCG-GGCC-CSSCEEEEEEESCGGGCS-
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCcH----HHhhhhhcccccccccccccc-cccc-cccccccccccceeEecC-
Confidence 599999999999999987555555544322 344444333 222122233 2333 268999999999998764
Q ss_pred CCCCCCcchhhhhh-cccccCCcEEEEE
Q 005432 625 HRHRCSTLDIFTEI-DRILRPEGWVIIR 651 (697)
Q Consensus 625 ~~~~c~~~~~l~E~-dRiLRP~G~~i~~ 651 (697)
+...+|.|+ +|+|+|||++++.
T Consensus 96 -----d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 -----DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -----SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHhcCCCceEEEE
Confidence 235678888 6999999999985
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.00 E-value=8.3e-06 Score=82.54 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCcEEEeecccCCCCCCCC
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQLPYPSLS 347 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~LPfpd~s 347 (697)
.+.+||-||+|.|..+..++++. ..+++.+|+++.+++.|++-. ..+.+...|+...--.+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~--~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCceEEEecCCchHHHHHHHHhC--CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 56899999999999999988774 357899999999999997531 2345555565432223578
Q ss_pred ccEEEeccccccccccH----HHHHHHHHHhccCCeEEEEEeCC
Q 005432 348 FDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 348 FDlV~~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
||+|++-.. ....... ..+++.+++.|+|||.+++....
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 999997533 2221111 46899999999999999987643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.00 E-value=9.1e-07 Score=87.85 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=68.7
Q ss_pred CCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh----hHhccCcccccccc-cccCCCCCCccccccc
Q 005432 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDW-CEAFPTYPRTYDLVHA 615 (697)
Q Consensus 541 ~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~----~i~~RGlig~~~~~-~e~f~typrtyDl~H~ 615 (697)
++++.+++|||+|||.|.++.+|.+..-.+-+.- .|-+..+. .+-+.|+..-+.-. ...|...|..||+|.+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 3567789999999999999999987422232221 12223333 33445653322111 1124445678999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
..++..+. +. ....+|-|+=|.|+|||.++|.|
T Consensus 153 ~~vlh~~~---d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWP---DH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSC---HH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCC---ch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 99998875 21 23368999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=1.5e-06 Score=84.06 Aligned_cols=93 Identities=29% Similarity=0.393 Sum_probs=65.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCccc-ccccccccCCCCCCccccccccC-ccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFPTYPRTYDLVHAEG-LLSLESG 624 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig-~~~~~~e~f~typrtyDl~H~~~-~~~~~~~ 624 (697)
.|||+|||.|.++-.|.+.+. .|+=+|-. ..+..+-++|..- +..+- +.+|.-+.+||+|-|.+ ++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~giD~s~~~l~~a~~~~~~~~~~~~~-~~l~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred EEEEECCCCchhcccccccce-----EEEEeecccccccccccccccccccccc-cccccccccccceeeecchhhhhh-
Confidence 489999999999999987332 33444444 7788888888632 22232 33543348999998754 555433
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+...+|-|+-|+|+|||.+++..
T Consensus 118 -----d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 -----NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp -----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----hHHHHHHHHHhhcCcCcEEEEEE
Confidence 23467889999999999999964
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=2.4e-06 Score=85.72 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=58.8
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCc-ccccccccccCCCCCCccccccccCcccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGl-ig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
-.+|||+|||.|.|..+|.+....+-+ +=+|-. ..+..+-+|+- +.....=.+.+|.-+.+||+|.+.....
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~---~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~--- 158 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--- 158 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC---
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEE---EEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH---
Confidence 457999999999999999874323333 333433 56666666542 1111111233443348999999844332
Q ss_pred CCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 624 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 624 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
-+-||.|+|||||++++..
T Consensus 159 ----------~~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 159 ----------KAEELARVVKPGGWVITAT 177 (268)
T ss_dssp ----------CHHHHHHHEEEEEEEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEEEe
Confidence 2569999999999999963
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.95 E-value=5e-06 Score=82.37 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEeccccccccc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 362 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~ 362 (697)
+..+|||||||+|.++..++++. +..+++..|..+. ++.+.. ...+.+...|... +.|. .|+++...+++.|.+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSD 154 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCH
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCCH
Confidence 35789999999999999999874 5678899998643 333222 2345555555432 4443 477777777666653
Q ss_pred c-HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 363 K-DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 363 d-~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
+ ...+|+++++.|+|||.++|.+..
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 3 357999999999999999998754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.93 E-value=2.7e-05 Score=79.65 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh----cCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~----~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~LPfpd~sFDlV~~~ 354 (697)
...+|||.+||+|.++..+.+ +......++|+|+++.+++.|+.. +....+...+.... .+...||+|+++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~N 195 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 195 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccC
Confidence 347899999999999887753 334556799999999999887643 55565555554332 345689999998
Q ss_pred ccccccccc-----------------HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 355 RCGVDWDQK-----------------DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d-----------------~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
--......+ ...++..+.+.|+|||++++..|.
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 542111100 123688899999999999998874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=2.1e-05 Score=74.51 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCccEEEecccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-LPfpd~sFDlV~~~~~l 357 (697)
..+|||++||+|.++..++.+|. ..|+.+|.+...++.+++. +. +..+...|+.. +...+..||+|++.--
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP- 120 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 120 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred hhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc-
Confidence 47899999999999999999985 3689999999999877653 22 34455555433 3345678999998754
Q ss_pred ccccccHHHHHHHHHH--hccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~R--vLKPGG~Lvis~p 386 (697)
+. ......++..+.+ +|+++|.+++...
T Consensus 121 Y~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 121 FR-RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cc-cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 22 1234556666654 6999999998643
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=4.9e-05 Score=75.53 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EE
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IG 334 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~ 334 (697)
..|...+.+++..... ......+|||||||+|..+..|+.+. ....++|+|+++.+++.|++. ++... +.
T Consensus 42 ~~~~~~i~~l~~~~~~---~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDS---DKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCCG---GGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhcc---CccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeee
Confidence 4466667776643221 12234689999999999999998773 457899999999999998754 34332 33
Q ss_pred eecccCC------CCCCCCccEEEecccc
Q 005432 335 SFASKQL------PYPSLSFDMLHCARCG 357 (697)
Q Consensus 335 ~~da~~L------Pfpd~sFDlV~~~~~l 357 (697)
..+.... ...+++||+|+|+--.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY 146 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPF 146 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCcc
Confidence 2222111 1345689999998653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.90 E-value=1.3e-06 Score=83.36 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=65.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-ccccccccccCCCCCCccccccccCcccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~~~~~e~f~typrtyDl~H~~~~~~~ 621 (697)
.|||+|||.|.++..|.+.+.. |+-.|-. +.+..+-++ |. +-..+.=-+.++....+||+|.|..++.+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~~-----v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGFE-----VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTCE-----EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCcchhhhhHhhhhcc-----cccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 5899999999999999874433 3444544 566555443 43 11111111123333389999999998887
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.. . .++..+|-|+-|+|+|||.+++...
T Consensus 115 ~~---~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FE---P-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CC---H-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC---h-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 53 1 3456789999999999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.7e-06 Score=83.96 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=61.3
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCC-CchhhHhcc-----Cccccccccc------------ccCCCC
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWC------------EAFPTY 606 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~-~~l~~i~~R-----Glig~~~~~~------------e~f~ty 606 (697)
+|||+|||.|.|...|++. ..+-....++=+|.. ..+..+-+| .+-.+-.+|. ++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 120 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE-- 120 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS--
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC--
Confidence 5999999999997777541 011112333444433 444444333 2322222332 2233
Q ss_pred CCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 607 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 607 prtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.+||+|+|.++|.+.. ++...|-+|-|+|+|||+++|.
T Consensus 121 ~~~fD~I~~~~~l~~~~------d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVK------DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCCEEEEEEESCGGGCS------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEccceecCC------CHHHHHHHHHhhCCCCCEEEEE
Confidence 38999999999988664 3568999999999999998874
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.87 E-value=3e-06 Score=84.45 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=79.1
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCCCccccccccCc
Q 005432 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
..-.+|||+|||.|.++..|+...-. +|.-+|.. ..|..+-++ ..+-.++.=-+.|+.=+.+||+|.|..+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~----~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA----TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS----EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc----eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecc
Confidence 34568999999999999998752111 23233333 344433322 2222222112334432489999999999
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCceeEEeeec
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIE 677 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~e 677 (697)
+.+.. + -.+..+|-++-|+|+|||+++|.+.. ...++++++.+.--+++..++..
T Consensus 168 l~hl~---d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 168 AIYLT---D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GGGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred ccccc---h-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 98765 1 13456799999999999999997531 12456777777777777655433
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=2.2e-06 Score=87.56 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=70.7
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh----hHhccCcccccccccccCCCCCCccccccccCcccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 623 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~----~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~ 623 (697)
.|||+|||.||++..|.+ +.++=|.-|.... +|+. .+-+.||....+.-+.-+++.+.+||-|=+-..|.+..
T Consensus 64 ~VLDiGCG~G~~~~~~a~-~~g~~v~git~s~--~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~~ 140 (291)
T d1kpia_ 64 TLLDIGCGWGSTMRHAVA-EYDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHFA 140 (291)
T ss_dssp EEEEETCTTSHHHHHHHH-HHCCEEEEEESCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGTT
T ss_pred EEEEecCcchHHHHHHHH-hcCcceeeccchH--HHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhcc
Confidence 699999999999998886 3566544443332 4443 34556887666655566666668999988888887754
Q ss_pred CCCCC---CCcchhhhhhcccccCCcEEEEE
Q 005432 624 GHRHR---CSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 624 ~~~~~---c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
..... -....++=++.|+|+|||.+++.
T Consensus 141 ~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 141 DGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 11011 12357899999999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.85 E-value=2.3e-05 Score=74.29 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC----CCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL----PYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L----Pfpd~sFDlV~ 352 (697)
.+.+|||+.||+|.++...+.+|. ..|+.+|.+..+++.+++. +. +..+.+.|+.+. .-....||+|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 358999999999999999999984 4689999999999887653 33 345566665432 22456899999
Q ss_pred eccccccccccHHHHHHHHHH--hccCCeEEEEEeC
Q 005432 353 CARCGVDWDQKDGILLLEVDR--VLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~R--vLKPGG~Lvis~p 386 (697)
+--- +. ..+....|..+.. +|+|+|++++...
T Consensus 119 lDPP-Y~-~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 119 LDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp ECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred echh-hh-hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 8743 22 2334567777754 6999999988643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=6.6e-06 Score=80.35 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=47.6
Q ss_pred CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH----------------HHHHHHHHHHhhcCcee
Q 005432 608 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDA 671 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~ 671 (697)
.+||+|-+..++.+... .+-....++-+|-|+|||||++|+.+-. -..+.++++.+.--+++
T Consensus 151 ~~fD~i~~~~~l~~~~~--~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 151 PLADCVLTLLAMECACC--SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CcccEEeehhhHHHhcc--cHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence 79999999888776531 2234556889999999999999996421 13577888888877875
Q ss_pred EEe
Q 005432 672 RVI 674 (697)
Q Consensus 672 ~~~ 674 (697)
.-.
T Consensus 229 ~~~ 231 (257)
T d2a14a1 229 EQL 231 (257)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.83 E-value=2.7e-06 Score=80.85 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cchhh----HhccCc---ccccccccccCCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~----i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.|||+|||.|.++-+|.+.... |+=+|-. ..|.. +-+.|+ -....|.++.. ++.+||+|.|..+|
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~-----v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYD-----VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVM 105 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCE-----EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCG
T ss_pred cEEEECCCCCHHHHHHHHHhhh-----hccccCcHHHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeee
Confidence 4999999999999999974332 3333333 33433 234454 33445555544 35899999999998
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.+.. .-....+|=++-|+|+|||++++.
T Consensus 106 ~~~~----~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 106 MFLE----AQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGSC----TTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecCC----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7754 234557899999999999999985
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.82 E-value=3.8e-06 Score=82.91 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=67.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Ccc-c---cccccc-ccCCCCCCcccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV-G---VLHDWC-EAFPTYPRTYDLVHAE 616 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gli-g---~~~~~~-e~f~typrtyDl~H~~ 616 (697)
.+|||+|||.|+++..+.+.+.. +|+=+|-. ..|..+-+| +.. . ...|-. +.+. ...+||+|.|.
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~----~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~~~ 100 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG----EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISSQ 100 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS----EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEEE
T ss_pred CEEEEecccCcHHHHHHHHcCCC----eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEEEc
Confidence 47999999999999999863221 34445544 666666654 221 1 112221 2222 13689999997
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE--cCHHHHHHHH
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESAR 661 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~ 661 (697)
..+...-. +.-.+..+|-||.|+|+|||++|+. |...+++.+.
T Consensus 101 ~~l~~~~~--~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 101 FSFHYAFS--TSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 145 (252)
T ss_dssp SCGGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred ceeeecCC--CHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHH
Confidence 77665431 2234557899999999999999985 4344444433
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.81 E-value=2.4e-06 Score=85.32 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchh----hHhccCccccccccc-ccCCCCCCccccccc
Q 005432 541 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWC-EAFPTYPRTYDLVHA 615 (697)
Q Consensus 541 ~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~----~i~~RGlig~~~~~~-e~f~typrtyDl~H~ 615 (697)
.++..++.|||+|||.|.++.+|++. .|=. +++-.|-+..+. .+-+.|+-....-.. ..|...|..||++.+
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~-~P~~--~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALR-APHL--RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHH-CTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHh-hcCc--EEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 34677899999999999999999973 3321 222223233332 334556533211111 223445678999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
.+++..|.. . ....+|-++=|.|+|||.++|-|.
T Consensus 154 ~~vLh~~~d--~--~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSD--E--DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCH--H--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCc--H--HHHHHHHHHHhhcCCcceeEEEEe
Confidence 999988752 1 223578899999999999998754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=3.3e-06 Score=85.96 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=69.2
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cc-hhhHhccCcccccccccccCCCCCCccccccccCccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NH-LPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~-l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
-.|||+|||.||+|-++.+. .++-|.-|...... .. -..+.+.|+.+-..--+.-+...|-+||-|=+-..|.+..
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~-~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~~- 141 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEK-YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFG- 141 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGTC-
T ss_pred CEEEEecCcchHHHHHHHhc-CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhcC-
Confidence 35999999999999988763 56655555444332 11 1245677886655544555555578899888877776642
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+ =....++-|+.|+|+|||.+++.
T Consensus 142 --~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 142 --H-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp --T-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred --c-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 1 22356899999999999999974
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.80 E-value=4.1e-06 Score=81.60 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=64.6
Q ss_pred ceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccc--cccccccCCCCCCcccccccc-
Q 005432 545 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGV--LHDWCEAFPTYPRTYDLVHAE- 616 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~--~~~~~e~f~typrtyDl~H~~- 616 (697)
..+.|||+|||.|.++..|.+.+. +|+=+|-. +-|-.+-+ +|+-.. .+|. +.++ ++.+||+|.|.
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~-----~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~-~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIA-FKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCC-CCSCEEEEEECS
T ss_pred CCCEEEEeCCCCCccchhhcccce-----EEEEEeeccccccccccccccccccchheehhh-hhcc-cccccchHhhhh
Confidence 356899999999999999987432 45555544 45544433 454221 2233 3343 46899999986
Q ss_pred CccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 617 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 617 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+.|.+.. .......|-++-|+|+|||++|+.
T Consensus 114 ~~~~~~~----~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 114 STIMYFD----EEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SGGGGSC----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcCC----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3455432 235567899999999999999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.80 E-value=3.4e-05 Score=77.79 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc--EEEeecccC-CCCCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA--MIGSFASKQ-LPYPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~--~~~~~da~~-LPfpd~sFDlV~~~~~ 356 (697)
..+|||+|||+|..+..+++. ....|+++|+|+.+++.|++. ++.. .+...+... ++...+.||+|+|+--
T Consensus 111 ~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred ccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 468999999999999888865 467899999999999988753 4433 233333322 2223468999999843
Q ss_pred ccccc--------ccHH----------HHHHH-HHHhccCCeEEEEEeC
Q 005432 357 GVDWD--------QKDG----------ILLLE-VDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~--------~d~~----------~~L~E-l~RvLKPGG~Lvis~p 386 (697)
.+.-. -+|. .++++ +.+.|+|||++++...
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11100 0111 22222 5678999999888654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=2.8e-05 Score=79.98 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCC-CCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQL-PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~L-Pfpd~sFDlV 351 (697)
.+++||.||.|.|..+..++++. ...+|+.+|+++..++.|++.- ..+.+...|+... .-.+++||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 56899999999999999998763 4568999999999999887642 2445555565432 2235689999
Q ss_pred Eeccccccccc-c------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 352 HCARCGVDWDQ-K------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 352 ~~~~~llh~~~-d------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
++-.. -.+.. . -..+++.+++.|+|||.+++...
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 96532 11111 1 14689999999999999998653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.79 E-value=6.2e-06 Score=83.05 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=61.7
Q ss_pred eeEEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHh----ccCcc-c-ccccccccCCCCCCccccccccC
Q 005432 546 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMIL----DRGFV-G-VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~----~RGli-g-~~~~~~e~f~typrtyDl~H~~~ 617 (697)
-++|||+|||.|.++..|.+.- ... +|+-+|-. ..+..+- +.|+- - +..|.. .++ ++.+||+|+|.+
T Consensus 28 ~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~-~~~~fD~v~~~~ 102 (281)
T d2gh1a1 28 PVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 102 (281)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred cCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccc-ccc-ccCCceEEEEeh
Confidence 4679999999999998886521 111 22223332 3333332 23431 1 122333 343 467999999999
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
++.+.. +...+|-||-|+|+|||++++.+
T Consensus 103 ~l~~~~------d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 103 FLLHMT------TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CGGGCS------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 987654 24578999999999999999865
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=4.3e-06 Score=80.91 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=74.7
Q ss_pred EEEecccCchhhhhhhhcc-CCCeEEEEeecCCCC-CchhhHhcc----CcccccccccccCCCCC-CccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~-~~l~~i~~R----Glig~~~~~~e~f~typ-rtyDl~H~~~~~~ 620 (697)
.|||+|||+|..+.+|.+. +.+- .+|+=.|-. .-|..+-++ +....++-.+..+..+| ..+|++.|..++.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 6999999999999888742 1121 256666765 677776554 67777887777777777 6899999988876
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
... .-+...+|-||-|.|+|||.+|+.|
T Consensus 120 ~~~----~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLP----PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSC----GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC----hhhHHHHHHHHHHhCCCCceeeccc
Confidence 643 2345579999999999999999975
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.73 E-value=6e-06 Score=82.67 Aligned_cols=113 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHh----ccCccc--ccccccccCCCCCCccccccccCccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~----~RGlig--~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
..|||+|||.|.++.++...+..|.-+-+-| .-+..+- ..|+-. +..|.-+.++. .+||+|.|+-+..
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~----~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDP----MVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCG----GGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHH
T ss_pred CEEEEcccchhHHHHHHHhcCCEEEEEECCh----HHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhccccc
Confidence 3799999999999988887544444333333 3333332 245411 12233344443 6899999864443
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
.. ..++=++-|+|+|||++|+++- .+..+.+.+..+...|+....
T Consensus 196 ~l---------~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 196 LH---------AALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp HH---------HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred cH---------HHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence 33 2567789999999999998752 233466777777777876554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.72 E-value=1.4e-05 Score=76.27 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc-
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 361 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~- 361 (697)
.+.+|||.|||+|.|+..+.++......+.++|+++..+..+. ...+...+..... ....||+|+++.-.....
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLWE-PGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGCC-CSSCEEEEEECCCCCCBSC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhccc-cccccceecccCccccccc
Confidence 3479999999999999888766445567999999986543322 2334444544333 346899999885421110
Q ss_pred -c-------------------------c-HHHHHHHHHHhccCCeEEEEEeCC
Q 005432 362 -Q-------------------------K-DGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 362 -~-------------------------d-~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
. + ...++....+.|+|||++++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 0 0 124577888999999999998874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.69 E-value=4e-05 Score=75.69 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=57.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~LPfpd~sFDlV~~~~ 355 (697)
..++|||||||+|.+|..|++.+ ..++++|.++.+++.++++. .++.+..+|+..++++......|+++-
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~NL 93 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNI 93 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEEC
T ss_pred CCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeeee
Confidence 45899999999999999999874 46899999999999988764 346788889988888765555666663
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=0.00016 Score=73.31 Aligned_cols=105 Identities=16% Similarity=0.100 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccC-C-CCCCCCccEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQ-L-PYPSLSFDML 351 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~-L-Pfpd~sFDlV 351 (697)
++++||=||-|.|..+..++++. ....++.+|+++++++.+++- ...+.+...|+.. + ..++++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 56899999999999999998873 345799999999999999763 2344555555432 2 2345689999
Q ss_pred Eecccccccccc----HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 352 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 352 ~~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+.-.. -..... ...+++.+++.|+|||.+++....+.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 97532 211111 14689999999999999999876543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.00018 Score=73.19 Aligned_cols=105 Identities=15% Similarity=0.043 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||-||.|.|..+..++++. ...+|+.+|+++.+++.|++.. ..+.+...|+.. +.-.++.||+|+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 56899999999999999998873 4567999999999999987632 234555555433 223456899999
Q ss_pred ecccccccc-cc----HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 353 CARCGVDWD-QK----DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~llh~~-~d----~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+-.. -... +. ...+++.+++.|+|||.++.....+.
T Consensus 168 ~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 168 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 7532 2211 11 14789999999999999999876543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.59 E-value=1.4e-05 Score=79.57 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=68.3
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 338 (697)
...+.+.+.+...++ .+|||||||+|.+|..|++.+ ..++++|.++.+++.++++. .++.+..+|+
T Consensus 16 ~ii~kIv~~~~~~~~--------d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~ 84 (245)
T d1yuba_ 16 KVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI 84 (245)
T ss_dssp TTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC
T ss_pred HHHHHHHHhcCCCCC--------CeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhhccchhhhhhhh
Confidence 445566666654444 899999999999999999984 46899999999988877653 3566788899
Q ss_pred cCCCCCCCCccEEEecccccccc
Q 005432 339 KQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 339 ~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
..++++...++.|+++.- ++..
T Consensus 85 l~~~~~~~~~~~vv~NLP-Y~Is 106 (245)
T d1yuba_ 85 LQFQFPNKQRYKIVGNIP-YHLS 106 (245)
T ss_dssp TTTTCCCSSEEEEEEECC-SSSC
T ss_pred hccccccceeeeEeeeee-hhhh
Confidence 888988888888887755 5544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.59 E-value=4.8e-05 Score=74.74 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccC-CC------CCCCCcc
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP------YPSLSFD 349 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-LP------fpd~sFD 349 (697)
++++|||||+++|..+..+++.-.....++.+|.++...+.|++. |.. +.+..+++.. ++ ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 358999999999999999987533346799999999998887753 443 4444444422 12 1356899
Q ss_pred EEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 350 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 350 lV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+|+.-.- .......+..+.+.|+|||.+++...
T Consensus 139 ~iFiDa~----k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 139 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred EEEeccc----hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 9997532 34456789999999999999999855
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.53 E-value=4.9e-06 Score=83.88 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=62.3
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccccc-------cccc---ccCCCCCCcc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVL-------HDWC---EAFPTYPRTY 610 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~-------~~~~---e~f~typrty 610 (697)
.++|||+|||.|.++..|.+.+. +|+=+|-. +-|..+-+ ++.-..+ .+|- ..+| +..+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-----eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 56899999999999999998543 45555554 44544433 3332111 1221 1233 24689
Q ss_pred ccccccC-ccccccCC-CCCCCcchhhhhhcccccCCcEEEEE
Q 005432 611 DLVHAEG-LLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 611 Dl~H~~~-~~~~~~~~-~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
|+|-|.. .|.+.... ...-....+|-||-|+|+|||.+|+.
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 9998854 45544310 01122446899999999999999984
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.52 E-value=0.00027 Score=71.06 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+.+||-||-|.|..+..++++. ...+++.+|++++.++.|++-. ..+.+...|+.. +--.+++||+|+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 56899999999999999998863 3467999999999999987642 234555555433 223457899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
.-.. -..... ...+++.+++.|+|||.++.....+
T Consensus 154 ~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 7632 221111 2478999999999999999986554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.51 E-value=0.00022 Score=73.16 Aligned_cols=105 Identities=12% Similarity=0.020 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||-||-|.|..+..++++. ...+|+.+|+++.+++.|++-. ..+.+...|+.. +.-..++||+|+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 56899999999999999999873 4568999999999999998642 233444444332 112356899999
Q ss_pred ecccccccccc----HHHHHHHHHHhccCCeEEEEEeCCCC
Q 005432 353 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLTN 389 (697)
Q Consensus 353 ~~~~llh~~~d----~~~~L~El~RvLKPGG~Lvis~p~~~ 389 (697)
+-.. -...+. ...+++.+++.|+|||.++.....+.
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 7633 221111 13589999999999999999876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.50 E-value=3e-05 Score=75.11 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=59.2
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
.|||+|||.|++..+|.+.- ..|..+-+.|.--..-...+-.|+.+-...-=....+.|+..+|.+-+ +|....
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~--v~~~~~-- 134 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL--IYQDIA-- 134 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE--EEECCC--
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE--EEeccc--
Confidence 89999999999999887621 124333333321111112334456544443334444556666665443 333322
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+......++-|+.|+|+|||++++-+
T Consensus 135 -~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 135 -QKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp -STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 33445578999999999999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00027 Score=71.55 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCccEEE
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-LPfpd~sFDlV~ 352 (697)
.+++||-||-|.|..+..+.++. ...+++.+|+++.+++.|++.. ..+.+...|+.. +.-..++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 56899999999999999998873 3568999999999999997642 345555555433 222456899999
Q ss_pred eccccccccccH----HHHHHHHHHhccCCeEEEEEeCCC
Q 005432 353 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLT 388 (697)
Q Consensus 353 ~~~~llh~~~d~----~~~L~El~RvLKPGG~Lvis~p~~ 388 (697)
+-.. -...... ..+++.+++.|+|||.+++....+
T Consensus 157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 8632 2111111 258999999999999999986544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.50 E-value=6.7e-05 Score=72.40 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cch----hhHhccCcccc--c----ccccccCCCCCCcccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL----PMILDRGFVGV--L----HDWCEAFPTYPRTYDLVHAE 616 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l----~~i~~RGlig~--~----~~~~e~f~typrtyDl~H~~ 616 (697)
.|||+|||.|.|..+|.....+. |++-+|-. +.+ ..+-++||--+ + .+.-+.|+. .++|.|+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~--~~~d~v~i~ 106 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEP--GEVKRVYLN 106 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCT--TSCCEEEEE
T ss_pred eEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCc--hhhhccccc
Confidence 69999999999999998753333 44444543 333 34556776221 1 111123443 789988864
Q ss_pred CccccccC-CCCCCCc-chhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCc
Q 005432 617 GLLSLESG-HRHRCST-LDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKW 669 (697)
Q Consensus 617 ~~~~~~~~-~~~~c~~-~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W 669 (697)
...-..+. +..+..+ ..+|=||-|+|+|||.+.|+ |..+..+.+.++....-.
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence 44322221 0123332 37888999999999999875 777777777776654443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.48 E-value=5e-05 Score=71.90 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=76.2
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCccc-----ccccccccCCCCCCccccccc
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG-----VLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig-----~~~~~~e~f~typrtyDl~H~ 615 (697)
-.+|||+|||.|.|+.+|..... +|.-+|-. ..+..+-+ -|+-. +..|+-+.++ +.+||+|-+
T Consensus 53 ~~~VLDiGcG~G~~~~~la~~~~-----~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~ 125 (194)
T d1dusa_ 53 DDDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIIT 125 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEE
T ss_pred CCeEEEEeecCChhHHHHHhhcc-----ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEEE
Confidence 45899999999999999986433 34444443 44444432 24321 2235545443 589999999
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEc
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 689 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K 689 (697)
+..|.... -.+..++-++.|+|+|||.+++. .....-+.+....+.+-+++..... ...=+|+-++|
T Consensus 126 ~~p~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~--~~gf~vl~a~K 193 (194)
T d1dusa_ 126 NPPIRAGK-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTI--KGGYRVLKSKK 193 (194)
T ss_dssp CCCSTTCH-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEE--ETTEEEEEEEC
T ss_pred cccEEecc-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEe--cCCcEEEEEEE
Confidence 87764322 12346788899999999987663 2222234444555555555544321 11234555555
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.47 E-value=4.1e-05 Score=75.20 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=75.3
Q ss_pred EEEecccCchhhhhhhhccC--CCeEEEEeecCCCCCchhhHhccC-cccccccccccCCCCCCccccccccCccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 624 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~--~~vwvmnv~p~~~~~~l~~i~~RG-lig~~~~~~e~f~typrtyDl~H~~~~~~~~~~ 624 (697)
+|||+|||.|.++.+|.+.. -.|+-+.+.|.--..-...+-.|+ ++-+.++...+.+.-+.++|.+-+...+.
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~---- 152 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA---- 152 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC----
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc----
Confidence 79999999999999998732 236666665543222222344455 35566777766654446666544433333
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEEEcC----------HHHHHHHHHHHhhcCceeE
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVIIRDT----------ARLIESARALTTRLKWDAR 672 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------~~~~~~~~~~~~~~~W~~~ 672 (697)
.......++.|+.|+|+|||++++.++ ..+.+++.+.++.-..+..
T Consensus 153 --~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~iv 208 (230)
T d1g8sa_ 153 --QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIV 208 (230)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEE
T ss_pred --chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 234456789999999999999998632 2445566666655555543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00041 Score=66.99 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CcEEEeecccCCCCCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~LPfpd~sFDlV~~~~~ll 358 (697)
..+|+|||+|.|.-+..++-.. +..+++.+|.+..-+.+.+ +-++ ++.+....++.+. .+.+||+|+|-.+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 4689999999999988887642 4578999999988776554 3365 4666666677664 3468999998755
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.....++.-....+++||.+++.-
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 446688999999999999998864
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.39 E-value=0.00015 Score=69.87 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=75.0
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cc----hhhHhccCc--cccc-ccccccCCCCC-CccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NH----LPMILDRGF--VGVL-HDWCEAFPTYP-RTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~----l~~i~~RGl--ig~~-~~~~e~f~typ-rtyDl~H~~~ 617 (697)
..|||+|||.|.|..+|.+..-+. |++-.|-. +- +.-+-+.|+ |-++ .|-.+-...+| .++|.||+..
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 379999999999999998743344 34444433 22 334455666 2222 22222112233 7999998733
Q ss_pred ccccccC--CCCCCCc-chhhhhhcccccCCcEEEE-EcCHHHHHHHHHHHhhcCceeEE
Q 005432 618 LLSLESG--HRHRCST-LDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKWDARV 673 (697)
Q Consensus 618 ~~~~~~~--~~~~c~~-~~~l~E~dRiLRP~G~~i~-~d~~~~~~~~~~~~~~~~W~~~~ 673 (697)
. ..|.. +.+|..+ ..+|-++.|+|+|||.+++ +|..+..+.+.+......|....
T Consensus 110 P-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 110 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred c-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 2 22221 0122333 4788899999999999987 57777777777766666665543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.38 E-value=3.1e-05 Score=75.46 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=64.1
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----Cc-cccc-ccccccCCCCCCcccccccc-Cc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAE-GL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----Gl-ig~~-~~~~e~f~typrtyDl~H~~-~~ 618 (697)
++|||+|||.|.++-.|.+.+. +|+=+|.. ..|..+-+| |+ +-++ .|..+ |+. +++||+|=|. +.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~-----~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LNI-NRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CCC-SCCEEEEEECTTG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC-----ccEeeccchhhhhhccccccccCccceeeccchhh-hcc-cccccccceeeee
Confidence 5799999999999999987433 45555655 667666554 44 2111 23433 332 6899998764 34
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
|.... +.-....+|-+|-|.|+|||.||+
T Consensus 112 ~~~~~---~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 112 TNYII---DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCC---SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccC---CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 54443 333555689999999999999997
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=4.5e-05 Score=77.54 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=63.1
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCCCchhhHhccCc---ccccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||.|.++..+.+.+ +.|..+-.-+. .......+-+.|+ |-+++.-.+-++.-+..||+|=+.-+++..
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~ 115 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 115 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeec
Confidence 369999999999988777643 23333222110 0122234555665 444444445455445899999887666554
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. ..-.++.++-.++|+|+|||.+|-
T Consensus 116 ~---~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 116 L---FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp T---TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred c---cccccHHHHHHHHhcCCCCcEEec
Confidence 4 333455778889999999999984
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=4.1e-05 Score=74.47 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=59.3
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccC------cccccccccccCCCCC-CccccccccCc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG------FVGVLHDWCEAFPTYP-RTYDLVHAEGL 618 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RG------lig~~~~~~e~f~typ-rtyDl~H~~~~ 618 (697)
..|||+|||.|.++.+|.+. .. -+|+-++-. ..+..+-++. +..+.+++..-...+| .+||+|-.+..
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~--~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEA--PI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTS--CE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEeeccchHHHHHHHHc--CC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 47999999999999999862 22 234444443 4555544332 2233444443333333 67887754433
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.+.... .+.-....++-|+=|+|||||.|++-
T Consensus 131 ~~~~~~-~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 131 PLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccc-ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 322210 02223446889999999999999884
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=6.5e-05 Score=76.69 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=61.9
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCCCchhhHhccCc---ccccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~~~l~~i~~RGl---ig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||.|.++-.+.+.+ +.|..+-.-|. .......+-..|+ |-+.+.--+-++.-+..+|+|-+.-+....
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l 113 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL 113 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTB
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeee
Confidence 469999999998876666533 33433322111 0122234445566 333333333344434789999887665554
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
. ....++.++-+++|+|+|||.+|
T Consensus 114 ~---~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 114 F---YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp T---BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c---cHHHHHHHHHHHHhcCCCCeEEE
Confidence 4 44567789999999999999988
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.18 E-value=0.00062 Score=64.01 Aligned_cols=99 Identities=16% Similarity=0.114 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecc---cCCCCCCCCccEEEe
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFAS---KQLPYPSLSFDMLHC 353 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da---~~LPfpd~sFDlV~~ 353 (697)
..+|||+-||+|.++...+.+|. ..++.+|.+...++..++. +.. ..+...+. .........||+|++
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 47899999999999999999984 4689999999998776643 222 23333332 223344567999998
Q ss_pred ccccccccccHHHHHHHHHH--hccCCeEEEEEeC
Q 005432 354 ARCGVDWDQKDGILLLEVDR--VLKPGGYFVWTSP 386 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~R--vLKPGG~Lvis~p 386 (697)
--- +.. .....++..+.. +|+++|.+++...
T Consensus 122 DPP-Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 122 DPP-FHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCC-SSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred chh-Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 754 322 223456666654 7999999999654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00037 Score=65.81 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=64.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~~ 354 (697)
+..+|||+||++|.++.++.+.......+.++|..+- +....+.+...+..... ...+.||+|+|-
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD 95 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhhccCcceeEEEec
Confidence 3578999999999999999876434456888887541 11223344444433211 245679999997
Q ss_pred cccccccccH-----------HHHHHHHHHhccCCeEEEEEeCC
Q 005432 355 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 355 ~~llh~~~d~-----------~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.+ .....+. ..++.-+.++||+||.|++=.+.
T Consensus 96 ~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 96 MA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 65 3322111 13566688999999999997763
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.00012 Score=75.10 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=61.4
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCCCchhhHhccCccc---ccccccccCCCCCCccccccccCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~~~l~~i~~RGlig---~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+|||+|||+|.++..+.+.+ +.|...-.-+ ........+-+.|+.. +++.-.+.++.-+..||+|-+.-++...
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~ 118 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence 379999999999887776543 2333322211 0002233455667633 3333333333323789999987766554
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEE
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVI 649 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i 649 (697)
. .--.+..++.+++|+|+|||.+|
T Consensus 119 ~---~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 119 L---YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp S---TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred c---cchhHHHHHHHHHhccCCCeEEE
Confidence 4 33456678999999999999987
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.03 E-value=0.00014 Score=68.23 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=68.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc---cccccccccCCCCCCccccccccCcc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGLL 619 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli---g~~~~~~e~f~typrtyDl~H~~~~~ 619 (697)
.|||+|||+|+++.+|......|. -+|-. +-+..+-+ -|+- =+++.--+...+=...||+|=+....
T Consensus 36 ~VLDiGcGsG~~s~~lA~~~~~V~-----avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~ 110 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTLELAGRVRRVY-----AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG 110 (186)
T ss_dssp EEEEESCTTSHHHHHHHTTSSEEE-----EEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred EEEEEECCeEcccccccccceEEE-----EecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence 699999999999999986433333 33433 44444433 3441 12221111111112578888764432
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-HHHHHHHHHHHhhcCceeEEe
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 674 (697)
. .+..++-++-+.|||||++++..- .+...++.+......|+....
T Consensus 111 ~---------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~~ 157 (186)
T d1l3ia_ 111 G---------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (186)
T ss_dssp T---------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred c---------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEEE
Confidence 2 345789999999999999999753 345566666677766765543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.02 E-value=0.00032 Score=68.61 Aligned_cols=134 Identities=13% Similarity=0.227 Sum_probs=77.1
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCc-cccccccccc--CCCCCCccccccccCcccc
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF-VGVLHDWCEA--FPTYPRTYDLVHAEGLLSL 621 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGl-ig~~~~~~e~--f~typrtyDl~H~~~~~~~ 621 (697)
+|||+|||.|+++.+|.+. +-.|..+-+.|.-.......+-.|+. ..+..|-..+ ++...-.+|.|+++-...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~- 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP- 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc-
Confidence 7999999999999999862 12355544444332233334445663 4444444322 222234677776632111
Q ss_pred ccCCCCCCCcchhhhhhcccccCCcEEEEEc----------CHHHHHHHHHHHhhcCceeE-EeeeccCCC-ccEEEEEc
Q 005432 622 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD----------TARLIESARALTTRLKWDAR-VIEIESNSD-ERLLICQK 689 (697)
Q Consensus 622 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d----------~~~~~~~~~~~~~~~~W~~~-~~~~e~~~~-~~~li~~K 689 (697)
-....++-++.|+|+|||+++|.. ...+..+++++.+. .++.. ..+.+.-.+ --++|++|
T Consensus 155 -------~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 155 -------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEEEEEEEC
T ss_pred -------chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceEEEEEEe
Confidence 122358999999999999999852 23555666666554 45543 223333222 34677777
Q ss_pred c
Q 005432 690 P 690 (697)
Q Consensus 690 ~ 690 (697)
+
T Consensus 227 ~ 227 (227)
T d1g8aa_ 227 T 227 (227)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.00 E-value=0.0013 Score=62.10 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCC
Q 005432 264 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLP 342 (697)
Q Consensus 264 ~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~LP 342 (697)
.+++.+.+...++ ..++|..+|.|..+..+++.+ ..|+|+|..+.+++.|+++.. ...+.......+.
T Consensus 7 l~Evl~~l~~~~g--------~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~ 75 (182)
T d1wg8a2 7 YQEALDLLAVRPG--------GVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLK 75 (182)
T ss_dssp HHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHH
T ss_pred HHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHH
Confidence 3455555554444 899999999999999999874 468999999999999987532 2334433333321
Q ss_pred -----CCCCCccEEEeccccccc-ccc-------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 343 -----YPSLSFDMLHCARCGVDW-DQK-------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 343 -----fpd~sFDlV~~~~~llh~-~~d-------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
+..+.+|.|+.-...-.+ .++ ....|.....+|+|||.+++...
T Consensus 76 ~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 76 RHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 334679999875431111 111 13478888999999999998876
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00016 Score=69.88 Aligned_cols=120 Identities=12% Similarity=-0.022 Sum_probs=74.1
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc----------------------Cc-c-ccccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----------------------GF-V-GVLHDWCEA 602 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R----------------------Gl-i-g~~~~~~e~ 602 (697)
.|||+|||.|-.+-.|.+.+.. |+=+|.. .-+..+.++ |. + -...|.-+-
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~~-----V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGHS-----VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTCE-----EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCCc-----EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 6999999999999999985543 3444443 223222221 10 0 011122222
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE----cCH--------HHHHHHHHHHhhcCce
Q 005432 603 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTA--------RLIESARALTTRLKWD 670 (697)
Q Consensus 603 f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~----d~~--------~~~~~~~~~~~~~~W~ 670 (697)
-+..+.+||+|....+|.+.. .-....++-+|-|+|||||++++. +.. -.-++++++... .|+
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~----~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~ 197 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAIN----PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICN 197 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEE
T ss_pred cccccCceeEEEEEEEEEecc----chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCE
Confidence 244557999999988887664 233457899999999999987764 110 124567777765 477
Q ss_pred eEEeeec
Q 005432 671 ARVIEIE 677 (697)
Q Consensus 671 ~~~~~~e 677 (697)
+...+..
T Consensus 198 i~~le~~ 204 (229)
T d2bzga1 198 IRCLEKV 204 (229)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7655443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.94 E-value=0.0015 Score=66.69 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC-cEEEeecccCCCCCCCCccEEEe----
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHC---- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~-~~~~~~da~~LPfpd~sFDlV~~---- 353 (697)
.+.+|||+.||.|.=+..+++.......+++.|.++.-++...+ .++. +.+...+...++..+..||.|++
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPC 195 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPC 195 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCT
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcccc
Confidence 34899999999999888887664445678999999888765543 2443 44455566666666788999986
Q ss_pred cccc-cc--------ccc-cH-------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 354 ARCG-VD--------WDQ-KD-------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 ~~~l-lh--------~~~-d~-------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+... +. +.. +. .++|....+.|||||+++.++-....
T Consensus 196 Sg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~ 249 (313)
T d1ixka_ 196 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP 249 (313)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred ccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence 2111 11 111 11 14688899999999999999875543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.81 E-value=0.00085 Score=65.78 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC----CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~---g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP----fpd~sFDlV~~~~~ 356 (697)
+.+|||||++.|..+..+++. -.....++++|+.+.....+....-.+.+..++..... +....||+|+.-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 479999999999877666532 11346799999876554433333345666666654432 34557899886543
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
++ ......-+ ++...|+|||++++.|..
T Consensus 161 -H~-~~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 161 -HA-NTFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp -CS-SHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred -cc-hHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 32 22222223 466899999999998864
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.79 E-value=8.2e-05 Score=68.52 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=60.8
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccC----cc---c------------ccccccccCCCCC-
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRG----FV---G------------VLHDWCEAFPTYP- 607 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RG----li---g------------~~~~~~e~f~typ- 607 (697)
.|||+|||.|-++..|.+.+..|+...+.+ +.|..+-+|- .. + ...|+ ...+.++
T Consensus 23 rvLd~GCG~G~~a~~la~~G~~V~gvD~S~----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~ 97 (201)
T d1pjza_ 23 RVLVPLCGKSQDMSWLSGQGYHVVGAELSE----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDI 97 (201)
T ss_dssp EEEETTTCCSHHHHHHHHHCCEEEEEEECH----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-SSSTHHHH
T ss_pred EEEEecCcCCHHHHHHHHcCCceEeecccH----HHHHHHHHHhccccchhhhhhhhhccccccceecccc-cccccccc
Confidence 799999999999999998776666655432 3333333321 10 0 11111 1112222
Q ss_pred CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 608 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
.+||+|.+..++.... ......++-+|-|.|+|||.+++.
T Consensus 98 ~~~D~i~~~~~l~~l~----~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cceeEEEEEeeeEecc----hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 5799999988877653 123446888999999999998774
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0043 Score=63.40 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-C---CCCCCCccEEEec
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-L---PYPSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-L---Pfpd~sFDlV~~~ 354 (697)
..+|||+-||+|.++..|++.+ ..|+++|.++++++.|++. ++ ++.+..++... + +.....||+|+..
T Consensus 213 ~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 213 EDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp TCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 4789999999999999999873 5699999999999887653 44 45566665543 2 2335679999865
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
--.-- ....+..+.+ ++|.-.+++|.-
T Consensus 290 PPR~G----~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 290 PARAG----AAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp CCTTC----CHHHHHHHHH-HCCSEEEEEESC
T ss_pred CCCcc----HHHHHHHHHH-cCCCEEEEEeCC
Confidence 32111 1245666655 377777777754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.0029 Score=62.15 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC-cEEEeecccCCCC---CCCCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPY---PSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~-~~~~~~da~~LPf---pd~sFDlV~~~ 354 (697)
...+|+|||+|.|.-+..|+=. .+...++.+|.+..-+.+.+ +-++. +.+....++.+.. ..++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~-~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHh-CCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3478999999999988888753 24567999999987766543 33664 3444444554432 23589999997
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.+ .....++.-....+++||.+++.--
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEECC
Confidence 65 4567899999999999999988653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.74 E-value=0.00045 Score=68.58 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=57.8
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCC-CchhhHhcc----Cc----ccccccccccCCCCCCccccccc
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~-~~l~~i~~R----Gl----ig~~~~~~e~f~typrtyDl~H~ 615 (697)
+|||+|||.|+++.+|+.. +-.|.. ++-. .-+..+-++ +. --...|.++.++. .+||.|..
T Consensus 88 rVLEiG~GsG~lt~~la~~v~~~g~V~~-----vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~--~~fD~V~l 160 (250)
T d1yb2a1 88 DILEVGVGSGNMSSYILYALNGKGTLTV-----VERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--QMYDAVIA 160 (250)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSSEEEE-----ECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--CCEEEEEE
T ss_pred EEEEeeeeCcHHHHHHHHHhCCCcEEEE-----EECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc--ceeeeeee
Confidence 6999999999999888752 111222 2333 334444432 32 2244677777654 78999986
Q ss_pred cCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcC
Q 005432 616 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 653 (697)
Q Consensus 616 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 653 (697)
+ +-..| .+|=++-|+|||||.+++.-.
T Consensus 161 d-~p~p~----------~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 161 D-IPDPW----------NHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp C-CSCGG----------GSHHHHHHTEEEEEEEEEEES
T ss_pred c-CCchH----------HHHHHHHHhcCCCceEEEEeC
Confidence 3 33334 378899999999999998633
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0013 Score=66.11 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCcEEEeecccCCC--CCCCCccEEEe---
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAMIGSFASKQLP--YPSLSFDMLHC--- 353 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~~~~~~da~~LP--fpd~sFDlV~~--- 353 (697)
.+.+|||+.+|.|.=+..+++.+. ...|+++|.++.-++..+ ..|+.......+....+ ...+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 448999999999999999987643 367899999977664443 44666555443332221 24468999995
Q ss_pred -cccc-cc--------cccc-H-------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 354 -ARCG-VD--------WDQK-D-------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 354 -~~~l-lh--------~~~d-~-------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
+... +. +.+. . .++|..+.+.|||||+++.++-....
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 2221 11 1111 1 24788899999999999999876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00033 Score=69.29 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=76.1
Q ss_pred eeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Ccccc---------------------------
Q 005432 546 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGV--------------------------- 595 (697)
Q Consensus 546 iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Glig~--------------------------- 595 (697)
=+.|||+|||.|.+...++. + +..+|+-.|-. +.+..+-.+ .-.+.
T Consensus 55 g~~vLDiGcG~g~~~~~~~~--~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSAC--S--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGG--G--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CcEEEEeccCCCHHHHHHhc--c--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 45889999999988765543 1 23366666765 555544221 00000
Q ss_pred --------ccccc--c---cCCCCCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH--------
Q 005432 596 --------LHDWC--E---AFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------- 654 (697)
Q Consensus 596 --------~~~~~--e---~f~typrtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-------- 654 (697)
.+|-. . +.+..+..||+|-+..+++.... ++.++..+|-++-|+|||||++|+.+..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~--~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~ 208 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP--DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS--SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc--CHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence 01111 1 12233468999999888877652 5567788999999999999999986321
Q ss_pred --------HHHHHHHHHHhhcCceeE
Q 005432 655 --------RLIESARALTTRLKWDAR 672 (697)
Q Consensus 655 --------~~~~~~~~~~~~~~W~~~ 672 (697)
-..++|+++.+.---+++
T Consensus 209 ~~~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 209 EARLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CcccccCCCCHHHHHHHHHHCCCeEE
Confidence 134677777766665544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.59 E-value=0.0034 Score=61.96 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH---HHHcCCCcEEEeecccC-CCCCCCCccEEEecccccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGLPAMIGSFASKQ-LPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~---A~ergl~~~~~~~da~~-LPfpd~sFDlV~~~~~llh 359 (697)
..+|+|+|||.|.++.+++++. ....+.|+++--..-+. ....+-++ +....... .-.+.+..|+|+|-.+ ..
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni-~~~~~~~dv~~l~~~~~D~vlcDm~-es 143 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNL-VRLQSGVDVFFIPPERCDTLLCDIG-ES 143 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGG-EEEECSCCTTTSCCCCCSEEEECCC-CC
T ss_pred CCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCcccccccccc-ccchhhhhHHhcCCCcCCEEEeeCC-CC
Confidence 3689999999999999998773 45677777764221000 00000011 11111111 1235678999999854 32
Q ss_pred ccccH-------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 360 WDQKD-------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 360 ~~~d~-------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
..++ -.+|.-+.+.|+|||-|++-...+..
T Consensus 144 -s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~ 180 (257)
T d2p41a1 144 -SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 180 (257)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred -CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence 2222 14667778899999999998876643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.002 Score=63.71 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 338 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da 338 (697)
...+.+.+.+.... .+.|||||||+|.+|..|++.+ ..++++|+++.+++..+++. .++.+...|+
T Consensus 8 ~~~~~Iv~~~~~~~--------~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~ 76 (252)
T d1qyra_ 8 FVIDSIVSAINPQK--------GQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp HHHHHHHHHHCCCT--------TCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred HHHHHHHHhcCCCC--------CCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhhccchhHHhhhh
Confidence 34556666665443 4889999999999999999884 45899999999999887753 2355666666
Q ss_pred cCCCC
Q 005432 339 KQLPY 343 (697)
Q Consensus 339 ~~LPf 343 (697)
..+++
T Consensus 77 l~~~~ 81 (252)
T d1qyra_ 77 MTFNF 81 (252)
T ss_dssp GGCCH
T ss_pred hhhcc
Confidence 65543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.00042 Score=66.74 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=49.3
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHh---c-cCcccccccccccCCCCC--CccccccccCc
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMIL---D-RGFVGVLHDWCEAFPTYP--RTYDLVHAEGL 618 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~---~-RGlig~~~~~~e~f~typ--rtyDl~H~~~~ 618 (697)
+|||+|||+|.+++.|... +-.|...-+-| ..+..+- + -|+-.+..-.......+| .+||.|++...
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~----~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecch----hhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 8999999999999888641 11233333222 2222222 2 233222222222333333 68999999765
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEE
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 651 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 651 (697)
+... .-++=|.|+|||.+|+-
T Consensus 154 ~~~~------------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 154 VDEV------------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp BSCC------------CHHHHHHEEEEEEEEEE
T ss_pred HHHh------------HHHHHHhcCCCcEEEEE
Confidence 5432 22334679999999873
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0037 Score=62.69 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEe
Q 005432 262 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGS 335 (697)
Q Consensus 262 ~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~ 335 (697)
...+.+.+.+.... .++|||||+|+|.+|..|++++ ..++++|.++.+++..+++. .++.+..
T Consensus 8 ~i~~kIv~~~~~~~--------~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~ 76 (278)
T d1zq9a1 8 LIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLV 76 (278)
T ss_dssp HHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE
T ss_pred HHHHHHHHHhCCCC--------CCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhH
Confidence 34455555554433 4899999999999999999885 36899999999998887641 2355666
Q ss_pred ecccCCCCCCCCccEEEeccc
Q 005432 336 FASKQLPYPSLSFDMLHCARC 356 (697)
Q Consensus 336 ~da~~LPfpd~sFDlV~~~~~ 356 (697)
+|+....++ .++.|+++--
T Consensus 77 ~D~l~~~~~--~~~~vV~NLP 95 (278)
T d1zq9a1 77 GDVLKTDLP--FFDTCVANLP 95 (278)
T ss_dssp SCTTTSCCC--CCSEEEEECC
T ss_pred HHHhhhhhh--hhhhhhcchH
Confidence 777666554 3677877743
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.34 E-value=0.0041 Score=65.49 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC----C--------ceeEEEEecCCHHHHHHHHHc-
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE----L--------LTMCIANYEASGSQVQLTLER- 327 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g----~--------~~~sV~gvD~S~~ml~~A~er- 327 (697)
....+.+.+++... ...+|+|-.||+|.|...+.++- . ....+.|+|.++.+...|+..
T Consensus 148 ~~Iv~~mv~ll~~~--------~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 148 RPLIQAMVDCINPQ--------MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp HHHHHHHHHHHCCC--------TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred hhhhHhhheeccCc--------ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 34445555555432 34789999999999987776531 0 013488999999998887642
Q ss_pred ---CCC---cEEEeecccCCCCCCCCccEEEeccccc-ccc--------------cc-HHHHHHHHHHhccCCeEEEEEe
Q 005432 328 ---GLP---AMIGSFASKQLPYPSLSFDMLHCARCGV-DWD--------------QK-DGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 328 ---gl~---~~~~~~da~~LPfpd~sFDlV~~~~~ll-h~~--------------~d-~~~~L~El~RvLKPGG~Lvis~ 385 (697)
+.. ..+...+...- .+...||+|+++--.- .+. .+ ...++..+...|++||.+++..
T Consensus 220 ~l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 220 YLHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HHTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 322 22333343322 3456899999985421 000 01 1248899999999999999988
Q ss_pred CC
Q 005432 386 PL 387 (697)
Q Consensus 386 p~ 387 (697)
|.
T Consensus 299 p~ 300 (425)
T d2okca1 299 PD 300 (425)
T ss_dssp EH
T ss_pred ch
Confidence 73
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0022 Score=63.95 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=63.7
Q ss_pred EEEecccCchhhhhhhhccC-CCeEEEEeecCCCC-CchhhHh----ccCccc----ccccccccCCCCCCccccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMIL----DRGFVG----VLHDWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~-~~l~~i~----~RGlig----~~~~~~e~f~typrtyDl~H~~~ 617 (697)
+|||+|||.|+++++|...- ..-= |.-.|-. ..+..+- .-|+.. ...|-++.|+. ..||.|..
T Consensus 106 ~VLDiG~GsG~lt~~lA~~~~~~G~---V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~~-- 178 (266)
T d1o54a_ 106 RIIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALFL-- 178 (266)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEEE--
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcE---EEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cceeeeEe--
Confidence 79999999999999987521 1111 2222322 3333332 224422 23344455554 67887654
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHhhcCce
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWD 670 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~ 670 (697)
+-.+...+|-++-|+|||||.+++- -..+.++++.+.++.-.|.
T Consensus 179 ---------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 179 ---------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp ---------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ---------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 2234456899999999999999874 4445555555555555664
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.018 Score=57.73 Aligned_cols=107 Identities=8% Similarity=-0.019 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC-cEEEeecccCCCCCC---CCccEEEec
Q 005432 283 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPS---LSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~-~~~~~~da~~LPfpd---~sFDlV~~~ 354 (697)
.+.+|||+.||+|.-+.++++.-.....++++|.++.-++..++ .|+. +.+...|...+...+ +.||.|++-
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 173 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence 34889999999999888887652234578999999887765543 3554 445555655554322 579999963
Q ss_pred ----ccc-cc------c--ccc---H-------HHHHHHHHHhccCCeEEEEEeCCCCh
Q 005432 355 ----RCG-VD------W--DQK---D-------GILLLEVDRVLKPGGYFVWTSPLTNP 390 (697)
Q Consensus 355 ----~~l-lh------~--~~d---~-------~~~L~El~RvLKPGG~Lvis~p~~~~ 390 (697)
... +. | ..+ . ..+|.... .|+|||+++.++-....
T Consensus 174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~ 231 (293)
T d2b9ea1 174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ 231 (293)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence 111 10 1 001 0 12344444 47999999999875543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.66 E-value=0.01 Score=61.70 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC----------------cEEEeecccCCCC
Q 005432 284 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----------------AMIGSFASKQLPY 343 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~----------------~~~~~~da~~LPf 343 (697)
+.+|||..||+|..+.+.+... ....|+.+|.|+..++.+++. ++. +.+...|+..+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4789999999999999776642 245799999999999888753 221 1122223222211
Q ss_pred -CCCCccEEEeccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 344 -PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 344 -pd~sFDlV~~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....||+|..-- ...+..+|....+.++.||.|.++..
T Consensus 125 ~~~~~fDvIDiDP-----fGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP-----FGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC-----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC-----CCCcHHHHHHHHHHhccCCEEEEEec
Confidence 235799998653 13345799999999999999999864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0037 Score=62.53 Aligned_cols=134 Identities=12% Similarity=0.203 Sum_probs=82.4
Q ss_pred EEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cC---cccccccccccCCCCCCccccccccCccc
Q 005432 549 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 620 (697)
Q Consensus 549 vmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RG---lig~~~~~~e~f~typrtyDl~H~~~~~~ 620 (697)
|||+|||+|.-|.+|.....+. .|+-+|-. ..|.++-+ -| +-=+..||-++++. ..||+|=|+--+-
T Consensus 112 vlDlGtGSG~I~i~la~~~p~~---~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPYi 186 (274)
T d2b3ta1 112 ILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPYI 186 (274)
T ss_dssp EEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCCB
T ss_pred eeeeehhhhHHHHHHHhhCCcc---eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchhh
Confidence 8999999999999997643333 34444443 33332221 12 22355678777765 6899998864432
Q ss_pred ccc------------CCCCCCC-------cchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhhcCce-eEEeeeccCC
Q 005432 621 LES------------GHRHRCS-------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD-ARVIEIESNS 680 (697)
Q Consensus 621 ~~~------------~~~~~c~-------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~-~~~~~~e~~~ 680 (697)
... ....-.. +..++-+.-+.|+|||++++-=..+..+.+.++++...|. +.+.. +-.+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k-Dl~g 265 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR-DYGD 265 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE-CTTS
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE-CCCC
Confidence 110 0000000 1157888899999999999953333357788888888886 43432 3345
Q ss_pred CccEEEEE
Q 005432 681 DERLLICQ 688 (697)
Q Consensus 681 ~~~~li~~ 688 (697)
.+++++++
T Consensus 266 ~~R~v~~r 273 (274)
T d2b3ta1 266 NERVTLGR 273 (274)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEe
Confidence 78888875
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0056 Score=66.29 Aligned_cols=119 Identities=10% Similarity=0.002 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc----CC-------------ceeEEEEecCCHHHHHH
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----EL-------------LTMCIANYEASGSQVQL 323 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~----g~-------------~~~sV~gvD~S~~ml~~ 323 (697)
....+.+.+++.... ..+|+|-.||+|.|.....++ .. ....+.|.|..+.+...
T Consensus 150 ~~Iv~~mv~ll~~~~--------~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQP--------REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp HHHHHHHHHHHCCCT--------TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred cchhHhhhhcccCcc--------chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 334455556554333 378999999999998765442 10 01258999999999888
Q ss_pred HHHc----CCCcEE------EeecccCC-CCCCCCccEEEeccccc-cc-----------cccH-HHHHHHHHHhccCCe
Q 005432 324 TLER----GLPAMI------GSFASKQL-PYPSLSFDMLHCARCGV-DW-----------DQKD-GILLLEVDRVLKPGG 379 (697)
Q Consensus 324 A~er----gl~~~~------~~~da~~L-Pfpd~sFDlV~~~~~ll-h~-----------~~d~-~~~L~El~RvLKPGG 379 (697)
|+.. +....+ ...+.... ......||+|+++--.- .+ ..+. -.++..+.+.|+|||
T Consensus 222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG 301 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 301 (524)
T ss_dssp HHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence 7642 322211 11111100 02345799999985311 11 0111 248899999999999
Q ss_pred EEEEEeCC
Q 005432 380 YFVWTSPL 387 (697)
Q Consensus 380 ~Lvis~p~ 387 (697)
++++..|.
T Consensus 302 r~aiIlP~ 309 (524)
T d2ar0a1 302 RAAVVVPD 309 (524)
T ss_dssp EEEEEEEH
T ss_pred cEEEEEeh
Confidence 99998873
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.0035 Score=62.46 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=60.4
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCC-CchhhHhc---c---Ccccccc----cccc-cCCCCCCcccc
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILD---R---GFVGVLH----DWCE-AFPTYPRTYDL 612 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~-~~l~~i~~---R---Glig~~~----~~~e-~f~typrtyDl 612 (697)
+|||.|||.|+++.+|... +-.|++. |-. ..+..+-+ + +.....+ |-++ .|+. .+||.
T Consensus 99 ~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~--~~fDa 171 (264)
T d1i9ga_ 99 RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD--GSVDR 171 (264)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT--TCEEE
T ss_pred EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC--CCcce
Confidence 7999999999999999752 1123333 323 33333322 1 1122111 2222 2443 79998
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHH-HHHHhhcCce
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESA-RALTTRLKWD 670 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~-~~~~~~~~W~ 670 (697)
|.. ++-+.|. ++-++-|+|||||.+++- -..+.+.++ +.|...-.|.
T Consensus 172 V~l-dlp~P~~----------~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 172 AVL-DMLAPWE----------VLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEE-ESSCGGG----------GHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEE-ecCCHHH----------HHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 876 2444454 788999999999998874 444344333 3343343464
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.33 E-value=0.034 Score=50.19 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=66.5
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC--------C-CCCCCccEEE
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------P-YPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L--------P-fpd~sFDlV~ 352 (697)
...+||=+||| .|.++..+++.. ...++++|.+++-++.|++.+....+..-....- . ...+.+|+|+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceee
Confidence 34789999999 677777777662 3468999999999999999876554432111100 0 1134689887
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
-.-. ....+....++|+|||.+++....
T Consensus 104 d~~g-------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 104 DCSG-------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp ECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ecCC-------ChHHHHHHHHHHhcCCceEEEecC
Confidence 4422 235788899999999999987653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.26 E-value=0.0018 Score=63.58 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhccC----cccccccccccCCCCCCccccccccCc
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~RG----lig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+..++.|+|+|||.|.++++|++. .|=+. ++-.|-|. +|-+.+ +--+-+|.-++.|. .|++...++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~-~P~l~--~~v~Dlp~---vi~~~~~~~ri~~~~gd~~~~~p~----~D~~~l~~v 148 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISK-YPLIK--GINFDLPQ---VIENAPPLSGIEHVGGDMFASVPQ----GDAMILKAV 148 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHH-CTTCE--EEEEECHH---HHTTCCCCTTEEEEECCTTTCCCC----EEEEEEESS
T ss_pred ccCCcEEEEecCCCcHHHHHHHHH-CCCCe--EEEecchh---hhhccCCCCCeEEecCCccccccc----ceEEEEehh
Confidence 457999999999999999999974 34221 12122221 122222 23334565455543 599999999
Q ss_pred cccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+..|.. ..|. .||-.+=+.|+|||.++|-|
T Consensus 149 Lh~~~d--e~~~--~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 149 CHNWSD--EKCI--EFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp GGGSCH--HHHH--HHHHHHHHHEEEEEEEEEEE
T ss_pred hhhCCH--HHHH--HHHHHHHHHcCCCcEEEEEE
Confidence 999863 3343 58888999999999999865
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.07 E-value=0.0038 Score=60.93 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=62.7
Q ss_pred CceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCCCchhhHhcc-CcccccccccccCCCCCCccccccccCccccc
Q 005432 544 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 544 ~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~~~l~~i~~R-Glig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
.+++.|+|+|||.|.++.+|++. .|=+ .++-.|-|..+..+-+. .+-.+-||..++.|. .|..-..+++..|
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSK-YPTI--KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHH-CTTS--EEEEEECTTTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHH-CCCC--eEEEcccHHhhhhcccCCceEEecccccccCCC----cceEEEEEEeecC
Confidence 46899999999999999999974 4422 22223333333322222 256677888777765 3333334455555
Q ss_pred cCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
.. ..|. .||-++=+.|+|||.++|-|
T Consensus 153 ~d--~~~~--~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 153 SD--EHCL--KFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp CH--HHHH--HHHHHHHHHCCSSSCEEEEE
T ss_pred CH--HHHH--HHHHHHHHhcCCCceEEEEE
Confidence 42 2233 48999999999999999854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=94.63 E-value=0.005 Score=62.59 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=71.7
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHh----ccCcc------cccccccccCCCCCCccccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFV------GVLHDWCEAFPTYPRTYDLVHA 615 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~----~RGli------g~~~~~~e~f~typrtyDl~H~ 615 (697)
+.|||++||+|||+.++... .-.|+-+|.. .-|..+- .-|+- +-.-+|.+.+.....+||+|-+
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g-----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALG-----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHH-----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeeeccCCCCcHHHHHHHhc-----CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 68999999999999988642 2355555554 3343332 23441 1122333334444468999987
Q ss_pred cCc-cccccCCC--CCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcCceeEEee
Q 005432 616 EGL-LSLESGHR--HRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 616 ~~~-~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
+-- |+.-+... .......++-.+=++|+|||.+++... .+..+.+.+-+..-..++++..
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 642 32211000 001123678888899999999999632 3444555555566666666553
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.54 E-value=0.015 Score=57.38 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=65.7
Q ss_pred eEEEecccCchhhhhhhhccCC-CeEEEEeecCCCCCchhhHh----ccCcccccccccccCCCCC--CccccccccCcc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNHLPMIL----DRGFVGVLHDWCEAFPTYP--RTYDLVHAEGLL 619 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~-~vwvmnv~p~~~~~~l~~i~----~RGlig~~~~~~e~f~typ--rtyDl~H~~~~~ 619 (697)
.+|+||+||+|+|+-.++..+. .|+..=+-| ..+..+- .-|+-+...-.+.-.-.++ ..||.|......
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~----~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP----YTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEECCCH----HHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred cEEEECcceEcHHHHHHHHhCCcEEEEecCCH----HHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 4799999999999987765332 333322222 3333221 2244222222222222222 468877653322
Q ss_pred ccccCCCCCCCcchhhhhhcccccCCcEEEEEcC-------HHHHHHHHHHHhhcCceeEEee
Q 005432 620 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------ARLIESARALTTRLKWDARVIE 675 (697)
Q Consensus 620 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-------~~~~~~~~~~~~~~~W~~~~~~ 675 (697)
+ -...|-+.=++|+|||++.+.+. .+..+.+++++....+++.+..
T Consensus 185 ~----------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 185 R----------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp S----------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred c----------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 2 12456667789999999876421 2346778888888888887654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.011 Score=56.88 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=75.4
Q ss_pred ceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCc---cccc-ccccccCCC-----CCCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPT-----YPRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGl---ig~~-~~~~e~f~t-----yprtyDl 612 (697)
+-++||++|+++|==+.+|.+. +-.|.+.=.-|......-..+-.-|+ |-+. .+-.+..+. .+.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4789999999999888887752 11222222211111111122222343 1111 222232222 2468999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEcCH---------------HHHHH-HHHHHhhcCceeEEeee
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIES-ARALTTRLKWDARVIEI 676 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---------------~~~~~-~~~~~~~~~W~~~~~~~ 676 (697)
|..++--+.|. .++-++=+.|||||.+|+-|-. ..+.+ .+.|.+.-+|+....-.
T Consensus 139 ifiD~dk~~y~---------~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 139 AVVDADKENCS---------AYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEECSCSTTHH---------HHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEEeCCHHHHH---------HHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 99976554443 5666677999999999985331 11222 34567778888877632
Q ss_pred ccCCCccEEEEEc
Q 005432 677 ESNSDERLLICQK 689 (697)
Q Consensus 677 e~~~~~~~li~~K 689 (697)
.+.++|++|
T Consensus 210 ----gdGl~ia~K 218 (219)
T d2avda1 210 ----GDGLTLAFK 218 (219)
T ss_dssp ----TTCEEEEEE
T ss_pred ----CCeeEEEEe
Confidence 256999988
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.0054 Score=56.04 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-CCCCCCCccEEEeccccccc
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-LPYPSLSFDMLHCARCGVDW 360 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-LPfpd~sFDlV~~~~~llh~ 360 (697)
++.+||-+|+| .|.++..+++. ...+++++|.+++.++.+++.|....+...+... ..-..+.||+|+..-...+
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~- 103 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT- 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST-
T ss_pred CCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc-
Confidence 34899999998 77788877765 2346888999999999999988654443211111 1112357998876422111
Q ss_pred cccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 361 DQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 361 ~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...+....+.|+|||++++...
T Consensus 104 ----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 ----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp ----TCCTTTGGGGEEEEEEEEECCC
T ss_pred ----cchHHHHHHHhhccceEEEecc
Confidence 1124567899999999998754
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.44 E-value=0.0047 Score=59.35 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=66.5
Q ss_pred ceeEEEecccCchhhhhhhhcc---CCCeEEEEeecCCCCCchhhHhccCccc----ccccccccCCCC-----CCcccc
Q 005432 545 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVG----VLHDWCEAFPTY-----PRTYDL 612 (697)
Q Consensus 545 ~iRnvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~~~l~~i~~RGlig----~~~~~~e~f~ty-----prtyDl 612 (697)
+-++||++|||.|..+.+|.+. +-.|+++=+-|......-..+-.-|+-. +..+..+-.+.+ ..+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4689999999999888887652 1224433332211111111223335411 122233333322 267999
Q ss_pred ccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEEc-----CHHHHHHHHHHHhhcCceeEEe
Q 005432 613 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 613 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
|+.++..+.+. ....+.|.-|+|||||.+|+-| .++.++.|++ .=.|+....
T Consensus 136 ifiD~~~~~~~-------~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~~ 192 (214)
T d2cl5a1 136 VFLDHWKDRYL-------PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHY 192 (214)
T ss_dssp EEECSCGGGHH-------HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEEE
T ss_pred eeecccccccc-------cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehhh
Confidence 99876544433 1235777889999999877643 3455665554 345665543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.02 Score=58.29 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=55.1
Q ss_pred EEEecccCchhhhhhhhcc---CCCeEEEEeecCCCC-CchhhHhcc--------------Cc---cc-ccccccccCCC
Q 005432 548 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGT-NHLPMILDR--------------GF---VG-VLHDWCEAFPT 605 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~---~~~vwvmnv~p~~~~-~~l~~i~~R--------------Gl---ig-~~~~~~e~f~t 605 (697)
.|||+|||.|+++.+|... +-.|... +-+ ..+..+.++ ++ +- ...|.|.....
T Consensus 101 rVLE~GtGsG~lt~~LAr~vg~~G~V~t~-----E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 101 TVLEAGSGSGGMSLFLSKAVGSQGRVISF-----EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred EEEEecccccHHHHHHHHHhCCCcEEEEe-----cCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 6999999999999998752 1123332 222 222222210 11 11 12233333222
Q ss_pred CC-CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE-cCHHHHHHHHHHHh--hcCcee
Q 005432 606 YP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTT--RLKWDA 671 (697)
Q Consensus 606 yp-rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~--~~~W~~ 671 (697)
++ ..||.|..+ +-+.| .+|=|+-|+|||||.+++- -+.+.+.++-+..+ .+.|..
T Consensus 176 ~~~~~fD~V~LD-~p~P~----------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 176 IKSLTFDAVALD-MLNPH----------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp -----EEEEEEC-SSSTT----------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred cCCCCcceEeec-CcCHH----------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence 22 578877652 22333 3778999999999999874 34444444333332 345743
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.028 Score=51.55 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc---------cCCCCCCCCccEEE
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---------KQLPYPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da---------~~LPfpd~sFDlV~ 352 (697)
++.+||-+||| .|.++..+++.- -...|+++|.+++.++.+++.|....+...+. .++ .....||+|+
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvvi 105 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGADFIL 105 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEEE
T ss_pred CCCEEEEECCCccchhheeccccc-ccccccccccccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCceEEe
Confidence 45899999998 477777887762 12368999999999999998875443321110 111 1234699988
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.-. ....+....+.|+|||.+++...
T Consensus 106 d~vG-------~~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 106 EATG-------DSRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp ECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred ecCC-------chhHHHHHHHHhcCCCEEEEEee
Confidence 5422 12467888999999999987753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.025 Score=51.57 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEE
Q 005432 283 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~ 352 (697)
++.+||-+|+ |.|..+..+++.- ...+++++.+++.++.+++.|....+ +..... ...+.||+|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEecccccccccccccccc--CcccccccccccccccccccCccccc---ccccccHHHHhhhhhccCCceEEe
Confidence 4589999997 4677777777662 34577888888888999988765443 222211 2346799998
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
.... ...+.+..++|+|||.++...
T Consensus 103 d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred eccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 7532 246888899999999999864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=93.88 E-value=0.008 Score=58.23 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=45.6
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhcc--Cc--ccccccccccCCCCC--CccccccccCccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF--VGVLHDWCEAFPTYP--RTYDLVHAEGLLS 620 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~R--Gl--ig~~~~~~e~f~typ--rtyDl~H~~~~~~ 620 (697)
.|||+|||+|-++|.|...... |+-.+-. ..+..+-++ +. +-+.+ ...+..|| ..||.|++.....
T Consensus 73 ~VLdIG~GsGy~ta~La~l~~~-----V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 73 KVLEIGTGIGYYTALIAEIVDK-----VVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp EEEEECCTTSHHHHHHHHHSSE-----EEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBBS
T ss_pred eEEEecCCCCHHHHHHHHHhcc-----cccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcchh
Confidence 7999999999999887763333 3333332 222222211 11 11111 11122233 3599999865443
Q ss_pred cccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 621 LESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 621 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
. +.-++=+.|+|||.+|+
T Consensus 146 ~------------ip~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 146 T------------LLCKPYEQLKEGGIMIL 163 (224)
T ss_dssp S------------CCHHHHHTEEEEEEEEE
T ss_pred h------------hhHHHHHhcCCCCEEEE
Confidence 2 22233356999999987
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.74 E-value=0.1 Score=48.74 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=66.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC--------CCCCccEEEec
Q 005432 284 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY--------PSLSFDMLHCA 354 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPf--------pd~sFDlV~~~ 354 (697)
+.+||-+|||. |..+..+++.. ....|+.+|.++.-++.|++.|....+ +...-++ ....+|+++-.
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 48999999997 66777777541 234689999999999999998854332 1111111 23468998843
Q ss_pred ccc------cc--ccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCG------VD--WDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~l------lh--~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
-.. .+ ........+.+..++++|||.+++...
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 210 00 011234689999999999999998764
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.011 Score=57.13 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=22.8
Q ss_pred CccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEE
Q 005432 608 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 608 rtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
..||.|++..... .+.-++=+.|+|||.+|+
T Consensus 149 ~~fD~I~~~~~~~------------~ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 149 APYDAIHVGAAAP------------VVPQALIDQLKPGGRLIL 179 (224)
T ss_dssp CCEEEEEECSBBS------------SCCHHHHHTEEEEEEEEE
T ss_pred hhhhhhhhhcchh------------hcCHHHHhhcCCCcEEEE
Confidence 5799999965443 233445578999999997
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.04 E-value=0.079 Score=48.49 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=64.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP------fpd~sFDlV~~~~~ 356 (697)
..+||=+|||. |.++..+++.- -...|+++|.++.-++.|++-|....+.. ..+... .....||+|+-.-.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~-~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKFYGATDILNY-KNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHHHTCSEEECG-GGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHhhCccccccc-cchhHHHHHHHHhhccCcceEEEccC
Confidence 37888899996 88888888762 22358999999999999998885443321 111110 12346999875532
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+.+..+.|+|||.+++...
T Consensus 106 -------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 106 -------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp -------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEee
Confidence 12467888899999999998754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.013 Score=61.53 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=19.1
Q ss_pred cchhhhhhcccccCCcEEEEEc
Q 005432 631 TLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 631 ~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+...|-||=|+|||||.+|..+
T Consensus 312 l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 312 LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhcCCCcEEEEec
Confidence 4578999999999999999865
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.09 E-value=0.11 Score=46.37 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEecccc
Q 005432 284 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 357 (697)
Q Consensus 284 ~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~~l 357 (697)
+.+||=+||| .|..+..+++.. ...++++|.+++-++.+++.|....+.. ..++. ....+.+|.|.+...
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~-~~~~~~~~~~~~~~g~~~~i~~~~~- 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNA-RQEDPVEAIQRDIGGAHGVLVTAVS- 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEET-TTSCHHHHHHHHHSSEEEEEECCSC-
T ss_pred CCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccc-cchhHHHHHHHhhcCCccccccccc-
Confidence 4788889998 566677777663 2568999999999999998875443321 11110 011233455554432
Q ss_pred ccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 358 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 358 lh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...+....+.|+|||.+++...
T Consensus 104 -------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 104 -------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp -------HHHHHHHHTTEEEEEEEEECCC
T ss_pred -------chHHHHHHHHhcCCcEEEEEEe
Confidence 3578889999999999998754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=91.80 E-value=0.14 Score=50.65 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=89.6
Q ss_pred ccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-Cc
Q 005432 505 AEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NH 583 (697)
Q Consensus 505 ~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~ 583 (697)
..||+.+-+.+-.+.... ....|+|+|||.|..+.++.+. .+. +|+-+|-. .-
T Consensus 92 RpeTE~lv~~~~~~~~~~----------------------~~~~vld~g~GsG~i~~~la~~-~~~---~v~a~Dis~~A 145 (271)
T d1nv8a_ 92 RPETEELVELALELIRKY----------------------GIKTVADIGTGSGAIGVSVAKF-SDA---IVFATDVSSKA 145 (271)
T ss_dssp CTTHHHHHHHHHHHHHHH----------------------TCCEEEEESCTTSHHHHHHHHH-SSC---EEEEEESCHHH
T ss_pred hhhhhhhhhhhhhhhccc----------------------cccEEEEeeeeeehhhhhhhhc-ccc---eeeechhhhhH
Confidence 456777777776664321 2557999999999988888752 232 23444433 34
Q ss_pred hhhHhc----cCc---cccc-ccccccCCCCCCccccccccCcccccc----------------CCCCCCCcchhhhhhc
Q 005432 584 LPMILD----RGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLLSLES----------------GHRHRCSTLDIFTEID 639 (697)
Q Consensus 584 l~~i~~----RGl---ig~~-~~~~e~f~typrtyDl~H~~~~~~~~~----------------~~~~~c~~~~~l~E~d 639 (697)
+.++-+ -|+ +-+. .+|-++++.....||+|=++--.-... + ...++.++--=+.
T Consensus 146 l~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~g--g~dGl~~~r~i~~ 223 (271)
T d1nv8a_ 146 VEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFG--GEDGLDFYREFFG 223 (271)
T ss_dssp HHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBC--TTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeecccccccc--ccchHHHHHHHHH
Confidence 443332 244 3333 456677665445799988763321110 1 1111221110036
Q ss_pred ccccCCcEEEEEcCHHHHHHHHHHHhhcCceeEEeeeccCCCccEEEEEcc
Q 005432 640 RILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 690 (697)
Q Consensus 640 RiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~li~~K~ 690 (697)
++|+|||++++-=..+.-++++++++...| .. +-.+.+++++.+|+
T Consensus 224 ~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~---~k--Dl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 224 RYDTSGKIVLMEIGEDQVEELKKIVSDTVF---LK--DSAGKYRFLLLNRR 269 (271)
T ss_dssp HCCCTTCEEEEECCTTCHHHHTTTSTTCEE---EE--CTTSSEEEEEEECC
T ss_pred HhcCCCCEEEEEECHHHHHHHHHHHHhCCE---Ee--ccCCCcEEEEEEEc
Confidence 889999999996444445677777776655 22 34557999999985
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.24 Score=44.47 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEEe
Q 005432 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 353 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~~ 353 (697)
+..+||=+|||. |.++..+++.. -...|+++|.++.-++.|++.|....+..-+ +... -....+|+|+-
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHhCCcccccccc-cccccccccccccCCCCceEEEe
Confidence 347899999985 45555565542 2236899999999999999887654432111 1100 01246899886
Q ss_pred ccccccccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 354 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 354 ~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
.-. ....+......+++||.+++....
T Consensus 104 ~~G-------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CTG-------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ccC-------CchhHHHHHHHhcCCCEEEEEecC
Confidence 532 235788999999999999987653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.57 E-value=0.18 Score=46.14 Aligned_cols=97 Identities=11% Similarity=-0.043 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCccEEEecc
Q 005432 283 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP------fpd~sFDlV~~~~ 355 (697)
.+.+||=+|||. |.++..+++.- -...|+..|.++.-++.|++-|....+..-..+... ...+.+|+|+-.-
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~ 106 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA 106 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred CCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence 448899999996 88888887762 234688999999999999998865544211111110 1235789997442
Q ss_pred ccccccccHHHHHHHHHHhccCC-eEEEEEeCC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPG-GYFVWTSPL 387 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPG-G~Lvis~p~ 387 (697)
. ....+.+..+.|+|| |.+++....
T Consensus 107 G-------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 107 G-------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp C-------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred c-------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 2 246899999999996 999987653
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.50 E-value=0.03 Score=53.68 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=49.5
Q ss_pred EEEecccCchhhhhhhhcc-CCCeEEEEeecCCCCCchhhHhccCcccccccccccCCCCC--CccccccccCccccccC
Q 005432 548 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP--RTYDLVHAEGLLSLESG 624 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~-~~~vwvmnv~p~~~~~~l~~i~~RGlig~~~~~~e~f~typ--rtyDl~H~~~~~~~~~~ 624 (697)
+|||+|||+|-++|-|... +..|.++-+.+.-....-..+.+.|+-.+..-....+.-+| ..||.|++.......
T Consensus 81 ~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i-- 158 (215)
T d1jg1a_ 81 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI-- 158 (215)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC--
T ss_pred eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccC--
Confidence 8999999999999877642 22243333322111000011223354322222233333334 679999985544432
Q ss_pred CCCCCCcchhhhhhcccccCCcEEEE
Q 005432 625 HRHRCSTLDIFTEIDRILRPEGWVII 650 (697)
Q Consensus 625 ~~~~c~~~~~l~E~dRiLRP~G~~i~ 650 (697)
..-|++ -|+|||.+|+
T Consensus 159 -------p~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 159 -------PEPLIE---QLKIGGKLII 174 (215)
T ss_dssp -------CHHHHH---TEEEEEEEEE
T ss_pred -------CHHHHH---hcCCCCEEEE
Confidence 244554 4899999986
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=90.93 E-value=0.34 Score=49.65 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=61.7
Q ss_pred CCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHHHHHHHHHc------CCCcEEEee---ccc
Q 005432 284 VRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLTLER------GLPAMIGSF---ASK 339 (697)
Q Consensus 284 ~~~VLDIGCGtG~~a~~La~~---------------g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~---da~ 339 (697)
.-+|.|+||.+|..+..+.+. ..+..+|.-.|.-..--...-+. ..+..+..+ +..
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 357999999999987544332 12344555555543222211110 011223222 222
Q ss_pred CCCCCCCCccEEEecccccccccc---------------------------------HHHHHHHHHHhccCCeEEEEEeC
Q 005432 340 QLPYPSLSFDMLHCARCGVDWDQK---------------------------------DGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 340 ~LPfpd~sFDlV~~~~~llh~~~d---------------------------------~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.=-||++|.|++||+.+ +||... ...+|+.=.+-|+|||.++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 22389999999999988 888521 11356666677899999999876
Q ss_pred CC
Q 005432 387 LT 388 (697)
Q Consensus 387 ~~ 388 (697)
+.
T Consensus 211 gr 212 (359)
T d1m6ex_ 211 GR 212 (359)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.78 E-value=0.22 Score=44.19 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=60.7
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc---CCC-CCCCCccEEEeccccc
Q 005432 284 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QLP-YPSLSFDMLHCARCGV 358 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~---~LP-fpd~sFDlV~~~~~ll 358 (697)
..+||=+|||. |..+..+++.. ...++++|.+++-++.+++.|....+...+.. .+. ...+.+|.|++..
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 102 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV--- 102 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC---
T ss_pred CCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC---
Confidence 47888899984 55556666652 24688999999999999997765443211100 000 1233445554332
Q ss_pred cccccHHHHHHHHHHhccCCeEEEEEeCC
Q 005432 359 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 387 (697)
Q Consensus 359 h~~~d~~~~L~El~RvLKPGG~Lvis~p~ 387 (697)
....+....+.|+|||.+++....
T Consensus 103 -----~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 103 -----SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred -----CHHHHHHHHHHhccCCceEecccc
Confidence 136789999999999999987643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.53 E-value=0.15 Score=46.23 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCccEEEecc
Q 005432 283 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----Pfpd~sFDlV~~~~ 355 (697)
+..+||=+|||. |..+..+++. |. ..+..+|.++.-++.+++.|....+. ...++. .+.++.||+|+-.-
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 458899999984 4455555544 43 35778899999999999888544332 111111 12345799988442
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
. ....+.+..++++|+|.+++...
T Consensus 105 G-------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 105 G-------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp C-------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred C-------cHHHHHHHHhcccCceEEEEEee
Confidence 2 23678899999999999998653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.26 E-value=0.37 Score=48.37 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecc
Q 005432 261 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS 338 (697)
Q Consensus 261 ~~y~~~l~~lL~l~~~~~l~~~~~~~VLDIGCGtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da 338 (697)
....+.+.+.+..... .......+|||||.|.|.+|..|++.+ ....++++|.++..++..+++. -+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKT--YKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGT--CCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCcc--ccccCCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 3455566666654332 111245789999999999999998763 1236899999999988877652 2344544443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.98 E-value=0.13 Score=46.17 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCEEEEeCC-C-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCccEEEec
Q 005432 283 GVRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGC-G-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP------fpd~sFDlV~~~ 354 (697)
+..+||=+|| | .|..+..+++.. ....|+.+|.+++-++.+++.|....+. ....+.. ...+.||+|+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccchhhhcc
Confidence 3488999997 3 556666665542 2246889999999999999887554332 1111110 123569999865
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.. ....+....+.|+|||.+++...
T Consensus 105 ~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 105 NN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred cc-------cchHHHhhhhhcccCCEEEEecc
Confidence 33 24577888999999999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.92 E-value=0.049 Score=55.06 Aligned_cols=118 Identities=13% Similarity=0.115 Sum_probs=62.7
Q ss_pred eEEEecccCchhhhhhhhccC-CCeEEEEeecCCCCCchhhH----hccCcccccc-------cccccCCCCCCcccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMI----LDRGFVGVLH-------DWCEAFPTYPRTYDLVH 614 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~-~~vwvmnv~p~~~~~~l~~i----~~RGlig~~~-------~~~e~f~typrtyDl~H 614 (697)
.+|||++||.|+|+.+++..+ ..|+.+=+.| ..+..+ -.-|+-...+ +|-+.++.-..+||+|=
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~----~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP----RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCH----HHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeeecccCcccchhhhhhhcCCcEEEeecCCH----HHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 379999999999999887532 1233322222 222222 1234422222 23233333346899998
Q ss_pred ccCc-cccccCCC--CCCCcchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcC
Q 005432 615 AEGL-LSLESGHR--HRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLK 668 (697)
Q Consensus 615 ~~~~-~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~ 668 (697)
++-- |+.-.... .......++...=++|+|||.+++... .+..+.|.+-+....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g 285 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG 285 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence 7543 32211000 001233578888899999999999642 234455554444433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.54 E-value=0.084 Score=47.62 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccc
Q 005432 283 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 361 (697)
Q Consensus 283 ~~~~VLDIGCG-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~ 361 (697)
++.+||=+||| .|.++..+++.. ...++.+|.+++-++.+++.|....+...+........+.||+|+-.-. -
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g-~--- 103 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA-A--- 103 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-S---
T ss_pred CCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-c---
Confidence 34788889998 577777777752 3445678888888888988876544321111111122357998875422 1
Q ss_pred ccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 362 QKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 362 ~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
...+....+.|+|||.+++...
T Consensus 104 ---~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 ---PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ---CCCHHHHHTTEEEEEEEEECCC
T ss_pred ---chhHHHHHHHHhcCCEEEEecc
Confidence 1246677889999999998764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.41 E-value=0.047 Score=52.44 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=16.1
Q ss_pred EEEecccCchhhhhhhhc
Q 005432 548 NVLDMNAHFGGFNSALLE 565 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~ 565 (697)
+|||+|||+|-++|.|..
T Consensus 83 ~VLeIGtGsGY~ta~la~ 100 (223)
T d1r18a_ 83 RILDVGSGSGYLTACFYR 100 (223)
T ss_dssp EEEEESCTTSHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHH
Confidence 799999999999988864
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.24 E-value=0.035 Score=54.07 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=61.1
Q ss_pred CCceeEEEecccCchhhhhhhhccCCC---eEEEEeecCCCCCchhhHh-ccCcccccccccccCCCCCCccccccccCc
Q 005432 543 YNMVRNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMIL-DRGFVGVLHDWCEAFPTYPRTYDLVHAEGL 618 (697)
Q Consensus 543 ~~~iRnvmDm~~g~g~Faaal~~~~~~---vwvmnv~p~~~~~~l~~i~-~RGlig~~~~~~e~f~typrtyDl~H~~~~ 618 (697)
+.++++|+|+|+|.|.++.++++. .| +.|... |..+..+- .-.+--+-||.=++.| .+|++...++
T Consensus 78 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dl-----p~vi~~~~~~~rv~~~~gD~f~~~p----~aD~~~l~~v 147 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGTTAKIICET-FPKLKCIVFDR-----PQVVENLSGSNNLTYVGGDMFTSIP----NADAVLLKYI 147 (244)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHH-CTTCEEEEEEC-----HHHHTTCCCBTTEEEEECCTTTCCC----CCSEEEEESC
T ss_pred ccCceEEEEecCCccHHHHHHHHh-CCCCeEEEecC-----HHHHHhCcccCceEEEecCcccCCC----CCcEEEEEee
Confidence 356899999999999999999874 44 333332 22111111 1113334455434333 5899999999
Q ss_pred cccccCCCCCCCcchhhhhhcccccCC---cEEEEEc
Q 005432 619 LSLESGHRHRCSTLDIFTEIDRILRPE---GWVIIRD 652 (697)
Q Consensus 619 ~~~~~~~~~~c~~~~~l~E~dRiLRP~---G~~i~~d 652 (697)
+..|.. ..|. .||--+=+.|+|| |-++|-|
T Consensus 148 LHdw~d--~~~~--~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 148 LHNWTD--KDCL--RILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GGGSCH--HHHH--HHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cccCCh--HHHH--HHHHHHHHHcCcccCCcEEEEEE
Confidence 999873 2332 4777778889999 5566653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.073 Score=53.77 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=18.5
Q ss_pred cchhhhhhcccccCCcEEEEEc
Q 005432 631 TLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 631 ~~~~l~E~dRiLRP~G~~i~~d 652 (697)
+...|.||=|+|+|||.+|..+
T Consensus 245 ~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 245 VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhCCCCcEEEEec
Confidence 3468899999999999999743
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.58 E-value=0.35 Score=45.14 Aligned_cols=114 Identities=9% Similarity=0.055 Sum_probs=63.4
Q ss_pred EEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcccccccccccCCCCCCccccccccCccccc
Q 005432 548 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 622 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~ 622 (697)
+|||+|||+|+++.+++..+- . +|+-+|-. ..+..+.+ -|+- .--.+.-...++..||+|=++--|...
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~-~---~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGA-K---EVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEFNSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTC-S---EEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred EEEECcCcchHHHHHHHHcCC-C---EEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhhCCcCcEEEEcCccccc
Confidence 799999999999876665321 1 22333332 33333332 1221 111222233456789999887776543
Q ss_pred cCCCCCCCcchhhhhhcccccCCc--EEEEEcCHHHHHHHHHHHhhcCceeEEe
Q 005432 623 SGHRHRCSTLDIFTEIDRILRPEG--WVIIRDTARLIESARALTTRLKWDARVI 674 (697)
Q Consensus 623 ~~~~~~c~~~~~l~E~dRiLRP~G--~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 674 (697)
. ....+.++. +.+.+++ |.+-.......+-+++++..-.|.+...
T Consensus 123 ~---~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 123 R---KHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp S---TTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred c---ccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 3 334443332 2333344 3444556666777888888888876654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=88.52 E-value=0.62 Score=44.90 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred ccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccCch--hhhhhhhccCCCeEEEEeecCCCC-
Q 005432 505 AEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT- 581 (697)
Q Consensus 505 ~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~iRnvmDm~~g~g--~Faaal~~~~~~vwvmnv~p~~~~- 581 (697)
....+.|.+.+-+-...+. .+ +...-.+++|+|+|-| |.--|++- |=+ +|.-+++.
T Consensus 46 ~~~~~i~~rHi~DSl~~~~-~~---------------~~~~~~~ilDiGSGaGfPGi~laI~~---p~~--~v~Lves~~ 104 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAF-YV---------------DFNQVNTICDVGAGAGFPSLPIKICF---PHL--HVTIVDSLN 104 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGG-TS---------------CGGGCCEEEEECSSSCTTHHHHHHHC---TTC--EEEEEESCH
T ss_pred CCHHHHHHHhccchhhhhh-hh---------------cccCCCeEEeecCCCchHHHHHHHhC---CCc--cceeecchH
Confidence 3455778777766554432 22 2234568999998865 44444432 222 34444442
Q ss_pred ---Cchh-hHhccCc--ccccccccccCCC---CCCccccccccCccccccCCCCCCCcchhhhhhcccccCCcEEEEE-
Q 005432 582 ---NHLP-MILDRGF--VGVLHDWCEAFPT---YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR- 651 (697)
Q Consensus 582 ---~~l~-~i~~RGl--ig~~~~~~e~f~t---yprtyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~- 651 (697)
+=|. ++-+=|| +=++|..-|.+.. +.-.||+|=| +-| ..+..++-=...+|+|||.+++-
T Consensus 105 KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s-RAv---------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 105 KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA-RAV---------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE-ECC---------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE-hhh---------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 2233 4555577 5578888887753 3357999877 223 34445666678999999999984
Q ss_pred --cCHHHHHHHHHHHhhcCceeEEeeec----cCCCccEEEEEcc
Q 005432 652 --DTARLIESARALTTRLKWDARVIEIE----SNSDERLLICQKP 690 (697)
Q Consensus 652 --d~~~~~~~~~~~~~~~~W~~~~~~~e----~~~~~~~li~~K~ 690 (697)
+-.+.+++.++..+.+.++......- .+++..+++.+|.
T Consensus 175 G~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 175 AASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp CC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 44566777777778888876543222 2233457787764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.37 E-value=1.3 Score=39.05 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=60.0
Q ss_pred EEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCccEEEecccccccccc
Q 005432 286 TILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 363 (697)
Q Consensus 286 ~VLDIGCGt--G~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LPfpd~sFDlV~~~~~llh~~~d 363 (697)
+|+=||||. |+++..|.+.+. ...|+++|.+++.++.+++.+.-....... . ...+...|+|+..-- ...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~dlIila~p----~~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTSI-A--KVEDFSPDFVMLSSP----VRT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESCG-G--GGGGTCCSEEEECSC----HHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhhh-h--hhhccccccccccCC----chh
Confidence 477799983 446667766663 457999999999999999987544332111 1 122335799886532 123
Q ss_pred HHHHHHHHHHhccCCeEEEE
Q 005432 364 DGILLLEVDRVLKPGGYFVW 383 (697)
Q Consensus 364 ~~~~L~El~RvLKPGG~Lvi 383 (697)
...++.++...++++-.+.-
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEE
T ss_pred hhhhhhhhhccccccccccc
Confidence 45688999999998865543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.35 E-value=0.038 Score=49.56 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=51.9
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCc---ccccc-cccccCCCCCCccccccccC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLH-DWCEAFPTYPRTYDLVHAEG 617 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGl---ig~~~-~~~e~f~typrtyDl~H~~~ 617 (697)
.+|||++||+|+|+...+..+-. +|.=++.. ..+..+-+ -|+ +-+++ |.-+.+......||+|.++-
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~----~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS----AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC----EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEcCCccCHHHHHHHHhCcc----eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 47999999999999544332211 44444543 33332221 233 22222 22222233347899999875
Q ss_pred ccccccCCCCCCCcchhhhhhcccccCCcEEEEEc
Q 005432 618 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 652 (697)
Q Consensus 618 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 652 (697)
-|.... ....+ +.+.+ .++|+|+|.+|+..
T Consensus 92 Py~~~~---~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKET---IVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHHH---HHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred hhccch---HHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 544321 11112 23333 48999999999953
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.64 E-value=0.2 Score=47.09 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=51.6
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhccCcccccccccccCCCCCCccccccccCccccccCC
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 625 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~RGlig~~~~~~e~f~typrtyDl~H~~~~~~~~~~~ 625 (697)
++|||+|||.|.++-++...+-. +|+-+|-. ..+..+-+. + .-..--|.-+...|..||+|=++--|-...
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~----~V~~vDid~~a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~-- 121 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVV-- 121 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC----cccccccCHHHHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhh--
Confidence 58999999999887544432111 34444443 444444332 1 111112233344578899998876664322
Q ss_pred CCCCCcchhhhhhcccccCCcEEEEEcCHHHHHHHHHHHhh
Q 005432 626 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTR 666 (697)
Q Consensus 626 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~ 666 (697)
...+. .+ ++..+.+++.+...-.....+-+++....
T Consensus 122 -~~~D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 122 -KHSDR--AF--IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp ----CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred -hhchH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 22222 23 24456666554433233334444444433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.31 E-value=0.45 Score=42.72 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCccEEEec
Q 005432 283 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGC--GtG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP------fpd~sFDlV~~~ 354 (697)
+.++||=.|+ |.|.++..+++. ....+.++..+++..+.+++.|....+. ....++. .....||+|+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCcccccchhhcc--ccccceeeeccccccccccccccccccc-CCccCHHHHHHHHhCCCCEEEEEec
Confidence 3478998773 367778888776 2345666667788889998877654332 1111110 134679999976
Q ss_pred cccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
-. ...+.++.++|+++|.++...
T Consensus 102 ~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 102 LA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CC--------THHHHHHHHTEEEEEEEEECS
T ss_pred cc--------chHHHHHHHHhcCCCEEEEEc
Confidence 33 246778889999999999853
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.01 E-value=0.83 Score=41.19 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC----C-CCCCCCccEEEecc
Q 005432 283 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L-PYPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCG--tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~----L-Pfpd~sFDlV~~~~ 355 (697)
++++||=.|++ .|..+..+++.. ...++++..+++.++.+++.|....+..-+... + -.....+|+|+-.-
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 34889987875 567778888763 356888888999999999988655443211110 0 01335699987542
Q ss_pred ccccccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. ...+.+..+.|+|||.+++..
T Consensus 107 G--------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 107 G--------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp C--------HHHHHHHGGGEEEEEEEEECC
T ss_pred C--------chhhhhhhhhccCCCeEEeec
Confidence 2 357889999999999999864
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.52 E-value=0.89 Score=40.59 Aligned_cols=93 Identities=9% Similarity=0.053 Sum_probs=61.9
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-----CCCCCccEEEeccc
Q 005432 284 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARC 356 (697)
Q Consensus 284 ~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP-----fpd~sFDlV~~~~~ 356 (697)
..+||=+|+|. |..+..+++. +. ..++.+|.+++-++.+++.+....+. ...+... ...+.+|+|+-.-.
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEEEEecC
Confidence 47899999984 4455565543 42 35788999999999999877543332 1111100 12346898875532
Q ss_pred cccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 357 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 357 llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
....+....+.|++||.+++...
T Consensus 110 -------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred -------cchHHHHHHHHHhCCCEEEEEeC
Confidence 23578899999999999998764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.78 Score=40.92 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=64.3
Q ss_pred CCCEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCccEEE
Q 005432 283 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLH 352 (697)
Q Consensus 283 ~~~~VLDIGCG--tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP--------fpd~sFDlV~ 352 (697)
++.+||=.|+| .|.++..+++. ....+++++.+++-++.+++.|....+ +...-. -....+|+|+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi---~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVI---NYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEE---ECCCCCHHHHHHHHhCCCCeEEEE
Confidence 34789988666 67788888876 345789999999999999988865443 222211 1346799988
Q ss_pred eccccccccccHHHHHHHHHHhccCCeEEEEEeC
Q 005432 353 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 386 (697)
Q Consensus 353 ~~~~llh~~~d~~~~L~El~RvLKPGG~Lvis~p 386 (697)
.... ...+......|+|+|.+++...
T Consensus 103 d~~g--------~~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 103 DSVG--------RDTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp ECSC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred eCcc--------HHHHHHHHHHHhcCCeeeeccc
Confidence 6533 1356788999999999877543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=82.31 E-value=0.32 Score=48.79 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=61.5
Q ss_pred eEEEecccCchhhhhhhhccCCCeEEEEeecCCCC-CchhhHhc----cCcc--------cccccccccCCCCCCccccc
Q 005432 547 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--------GVLHDWCEAFPTYPRTYDLV 613 (697)
Q Consensus 547 RnvmDm~~g~g~Faaal~~~~~~vwvmnv~p~~~~-~~l~~i~~----RGli--------g~~~~~~e~f~typrtyDl~ 613 (697)
+.|||+.||+|||+-++... ..--|.+| |.. ..+..+-+ .|+= +-.-+|.+.+..-.+.||+|
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~-ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMG-GAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHT-TBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CceeecCCCCcHHHHHHHhC-CCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 57999999999998665432 22334443 332 22332221 2331 11223333232223679999
Q ss_pred cccCc-cccccCCCCCCC----cchhhhhhcccccCCcEEEEEcC------HHHHHHHHHHHhhcCceeEE
Q 005432 614 HAEGL-LSLESGHRHRCS----TLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARV 673 (697)
Q Consensus 614 H~~~~-~~~~~~~~~~c~----~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~ 673 (697)
=++-- |+.-+. ..=. ...++-..=++|+|||++++... .+..+.+.+.+..-.+....
T Consensus 222 i~DPP~f~~~~~--~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 222 IIDPPSFARNKK--EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp EECCCCC-------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEcChhhccchh--HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 87633 432210 1111 22466666689999999999632 23344444444444444443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.96 E-value=0.22 Score=45.07 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=59.0
Q ss_pred CCCEEEEeCC-C-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-CCCCCCCCccEEEecccccc
Q 005432 283 GVRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLPYPSLSFDMLHCARCGVD 359 (697)
Q Consensus 283 ~~~~VLDIGC-G-tG~~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~LPfpd~sFDlV~~~~~llh 359 (697)
+.++||=.|+ | .|.++..+++.. ...+++++.+++.++.+++.|....+...+.. .. -..+.+|+|+-. +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D~v~d~-~--- 99 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGAEEAATYAEVPERA-KAWGGLDLVLEV-R--- 99 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEEEEEEC-S---
T ss_pred CCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccccccceeeehhhhhhhh-hccccccccccc-c---
Confidence 3478998885 3 467777777762 34678888888888999888865444221110 11 123469998753 1
Q ss_pred ccccHHHHHHHHHHhccCCeEEEEEe
Q 005432 360 WDQKDGILLLEVDRVLKPGGYFVWTS 385 (697)
Q Consensus 360 ~~~d~~~~L~El~RvLKPGG~Lvis~ 385 (697)
. ..+.+..+.|+|||.++...
T Consensus 100 -G----~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 100 -G----KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp -C----TTHHHHHTTEEEEEEEEEC-
T ss_pred -c----hhHHHHHHHHhcCCcEEEEe
Confidence 1 13567788999999998753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.42 E-value=0.52 Score=43.22 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=16.3
Q ss_pred EEEecccCchhhhhhhhc
Q 005432 548 NVLDMNAHFGGFNSALLE 565 (697)
Q Consensus 548 nvmDm~~g~g~Faaal~~ 565 (697)
+|+|.+||.|+|..++.+
T Consensus 22 ~IlDp~~G~G~fl~~~~~ 39 (223)
T d2ih2a1 22 RVLEPACAHGPFLRAFRE 39 (223)
T ss_dssp EEEEETCTTCHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHH
Confidence 799999999999988875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.44 E-value=2.1 Score=37.97 Aligned_cols=96 Identities=10% Similarity=-0.094 Sum_probs=60.9
Q ss_pred CCCEEEEeCCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCccEEEecc
Q 005432 283 GVRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCAR 355 (697)
Q Consensus 283 ~~~~VLDIGCGtG~-~a~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~LP------fpd~sFDlV~~~~ 355 (697)
++++||=+|||.+. .+..+++. .....|+++|.+++-++.+++.|....+...+..+.- ...+.+|+|+-..
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CCCEEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 45899999997443 44444443 2345789999999999999998865544322221110 2235799988654
Q ss_pred ccccccccHHHHHHHHHHhccCC-eEEEEEeC
Q 005432 356 CGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 386 (697)
Q Consensus 356 ~llh~~~d~~~~L~El~RvLKPG-G~Lvis~p 386 (697)
. ....+......+++| |.+++...
T Consensus 107 G-------~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 107 G-------RLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp C-------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred C-------chhHHHHHHHHHhcCCcceEEecC
Confidence 3 235667777788886 56666544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.25 E-value=1.6 Score=39.19 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=59.7
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC------CCCCCCccEEEec
Q 005432 283 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCA 354 (697)
Q Consensus 283 ~~~~VLDIGCGt-G~~a~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L------Pfpd~sFDlV~~~ 354 (697)
.+++||=+|||. |.++..+++. | ...|+++|.+++-++.|++.|....+...+.... -..++.+|.|+-.
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G--~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcC--CceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 458999999985 4445555543 3 3468999999999999999886554421111110 0123468888754
Q ss_pred cccccccccHHHHHHHHHHhccC-CeEEEEEeC
Q 005432 355 RCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSP 386 (697)
Q Consensus 355 ~~llh~~~d~~~~L~El~RvLKP-GG~Lvis~p 386 (697)
-. ....+.+....+++ +|.+++...
T Consensus 105 ~g-------~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 105 AG-------RIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SC-------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CC-------CchHHHHHHHHHHHhcCceEEEEE
Confidence 22 13466666666655 699888764
|