Query 005433
Match_columns 697
No_of_seqs 58 out of 60
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03300 assembly_YfgL outer 97.7 0.0074 1.6E-07 64.8 22.6 94 529-653 280-377 (377)
2 PRK11138 outer membrane biogen 97.4 0.033 7.2E-07 60.7 23.3 95 529-653 295-392 (394)
3 PRK11138 outer membrane biogen 96.9 0.0087 1.9E-07 65.2 12.6 28 132-159 122-150 (394)
4 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.0092 2E-07 55.8 9.3 73 52-156 6-78 (111)
5 cd00216 PQQ_DH Dehydrogenases 95.4 0.091 2E-06 59.6 10.6 91 536-648 364-458 (488)
6 PF01839 FG-GAP: FG-GAP repeat 94.8 0.03 6.6E-07 41.8 3.0 25 628-652 5-34 (34)
7 PF14781 BBS2_N: Ciliary BBSom 94.7 0.25 5.4E-06 47.9 9.8 114 56-196 6-120 (136)
8 PF01839 FG-GAP: FG-GAP repeat 94.5 0.042 9E-07 41.0 3.2 26 51-76 5-34 (34)
9 TIGR03074 PQQ_membr_DH membran 94.3 0.28 6E-06 59.2 11.2 97 537-645 640-744 (764)
10 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 0.35 7.5E-06 55.8 11.5 69 537-630 440-510 (527)
11 PF13360 PQQ_2: PQQ-like domai 92.9 0.49 1.1E-05 46.7 8.7 67 64-159 39-106 (238)
12 PF01011 PQQ: PQQ enzyme repea 90.2 0.21 4.6E-06 37.5 2.1 22 238-259 10-31 (38)
13 PF14782 BBS2_C: Ciliary BBSom 90.1 0.33 7E-06 55.0 4.4 42 611-653 1-43 (431)
14 PF13517 VCBS: Repeat domain i 90.0 0.27 5.9E-06 39.7 2.8 22 55-77 1-22 (61)
15 TIGR03300 assembly_YfgL outer 89.9 1.9 4.2E-05 46.4 10.0 92 531-653 68-161 (377)
16 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.8 17 0.00037 42.3 18.1 58 604-662 272-338 (527)
17 PF13517 VCBS: Repeat domain i 89.3 0.32 6.9E-06 39.3 2.7 25 632-656 1-25 (61)
18 TIGR02658 TTQ_MADH_Hv methylam 89.1 36 0.00078 37.9 19.2 201 401-645 76-318 (352)
19 COG1520 FOG: WD40-like repeat 84.9 1.7 3.6E-05 47.2 6.0 69 132-258 70-141 (370)
20 cd00216 PQQ_DH Dehydrogenases 83.7 7.7 0.00017 44.2 10.8 88 529-632 62-156 (488)
21 PF14779 BBS1: Ciliary BBSome 83.6 3.3 7.1E-05 44.2 7.2 77 52-154 21-102 (257)
22 PF13360 PQQ_2: PQQ-like domai 78.2 49 0.0011 32.6 13.1 102 529-652 77-188 (238)
23 smart00564 PQQ beta-propeller 75.0 2.1 4.5E-05 30.3 1.8 17 238-254 16-32 (33)
24 COG1520 FOG: WD40-like repeat 74.1 4.6 9.9E-05 43.9 5.0 27 133-159 114-141 (370)
25 PF14779 BBS1: Ciliary BBSome 73.3 8.2 0.00018 41.3 6.4 58 591-650 193-253 (257)
26 PF14727 PHTB1_N: PTHB1 N-term 68.5 32 0.00069 39.3 10.1 61 592-652 251-315 (418)
27 PF14783 BBS2_Mid: Ciliary BBS 66.8 6.5 0.00014 37.1 3.5 24 52-75 87-110 (111)
28 PF14727 PHTB1_N: PTHB1 N-term 64.8 20 0.00044 40.8 7.6 57 52-121 26-84 (418)
29 PF12256 TcdB_toxin_midN: Inse 59.9 7 0.00015 38.7 2.6 30 617-647 11-45 (175)
30 smart00191 Int_alpha Integrin 57.1 6 0.00013 32.2 1.4 27 630-656 12-46 (58)
31 PF00404 Dockerin_1: Dockerin 51.2 5.7 0.00012 27.1 0.3 11 428-438 1-11 (21)
32 PF08450 SGL: SMP-30/Gluconola 50.8 37 0.0008 34.4 6.2 43 601-646 203-245 (246)
33 smart00191 Int_alpha Integrin 44.6 14 0.0003 30.1 1.6 18 53-70 12-29 (58)
34 COG3386 Gluconolactonase [Carb 42.0 1.8E+02 0.004 31.7 10.1 45 599-647 229-276 (307)
35 PF12256 TcdB_toxin_midN: Inse 41.1 23 0.00049 35.1 2.9 22 50-71 26-47 (175)
36 PF09912 DUF2141: Uncharacteri 41.1 28 0.00061 32.4 3.3 32 407-438 36-72 (112)
37 PF12894 Apc4_WD40: Anaphase-p 37.2 37 0.00079 27.2 2.9 26 129-154 22-47 (47)
38 smart00564 PQQ beta-propeller 37.1 31 0.00068 24.1 2.3 24 132-155 8-32 (33)
39 PF14782 BBS2_C: Ciliary BBSom 36.2 31 0.00068 39.5 3.3 31 47-77 13-43 (431)
40 PF06433 Me-amine-dh_H: Methyl 34.0 3.2E+02 0.007 30.7 10.5 92 457-562 135-229 (342)
41 KOG4649 PQQ (pyrrolo-quinoline 33.9 3E+02 0.0066 30.3 9.8 30 530-564 191-221 (354)
42 PF04841 Vps16_N: Vps16, N-ter 32.0 86 0.0019 35.3 5.9 44 604-652 62-106 (410)
43 PF07483 W_rich_C: Tryptophan- 31.5 12 0.00027 35.2 -0.7 13 423-435 96-108 (109)
44 KOG0301 Phospholipase A2-activ 30.5 4.1E+02 0.009 32.5 11.1 114 529-664 183-299 (745)
45 KOG2063 Vacuolar assembly/sort 29.8 1E+02 0.0023 38.4 6.4 107 508-657 200-309 (877)
46 PF13860 FlgD_ig: FlgD Ig-like 27.5 55 0.0012 28.4 2.7 50 604-656 28-77 (81)
47 COG4704 Uncharacterized protei 27.5 36 0.00078 33.5 1.6 28 410-437 72-105 (151)
48 PF13540 RCC1_2: Regulator of 26.2 70 0.0015 23.0 2.6 19 598-616 4-22 (30)
49 KOG3637 Vitronectin receptor, 25.8 1.3E+02 0.0029 38.2 6.5 94 563-656 307-424 (1030)
50 KOG2103 Uncharacterized conser 24.6 2.2E+02 0.0048 35.4 7.6 32 130-161 451-483 (910)
51 PF07569 Hira: TUP1-like enhan 24.2 1.9E+02 0.0042 29.9 6.4 32 47-80 10-41 (219)
52 KOG3637 Vitronectin receptor, 24.1 45 0.00098 42.2 2.1 30 628-657 327-366 (1030)
53 PF10144 SMP_2: Bacterial viru 23.7 2.8E+02 0.0061 29.0 7.4 21 593-618 83-103 (210)
54 PF01011 PQQ: PQQ enzyme repea 22.3 72 0.0016 23.8 2.1 30 132-161 2-32 (38)
55 KOG4550 Predicted membrane pro 20.0 83 0.0018 36.4 2.9 39 28-66 224-270 (606)
No 1
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.70 E-value=0.0074 Score=64.82 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=59.9
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEe-ecceEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG-GDQEAVV 607 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~-Ge~~~~i 607 (697)
+.+++.+++|.|.|++.. ++..+|+... +. + . ...-|.+. ...|++. -+-.+.+
T Consensus 280 ~~vyv~~~~G~l~~~d~~----tG~~~W~~~~---~~------~--~-~~ssp~i~---------g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRR----SGSELWKNDE---LK------Y--R-QLTAPAVV---------GGYLVVGDFEGYLHW 334 (377)
T ss_pred CEEEEECCCCeEEEEECC----CCcEEEcccc---cc------C--C-ccccCEEE---------CCEEEEEeCCCEEEE
Confidence 346667789999999974 3478888521 00 0 0 11112211 1233333 3445777
Q ss_pred EcC-CCCEEEEEeCCCC-CCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 608 ISP-GGSILTSIDLPAP-PTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 608 ls~-~G~vl~s~~Lp~p-P~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
+|+ +|+++.+.+++.. -.+.|++.| +-|+|.|.+| +|+|.
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~------~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVG------DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEEC------CEEEEEeCCceEEEeC
Confidence 886 8999999999884 366667666 3499999999 88873
No 2
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.43 E-value=0.033 Score=60.71 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=58.7
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
+.+++.+.+|.|.|+++. +|..+|+......+.. .-|.+. + .-++++..+-.+.++
T Consensus 295 ~~vy~~~~~g~l~ald~~----tG~~~W~~~~~~~~~~------------~sp~v~------~--g~l~v~~~~G~l~~l 350 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTR----GGVELWSQSDLLHRLL------------TAPVLY------N--GYLVVGDSEGYLHWI 350 (394)
T ss_pred CEEEEEcCCCeEEEEECC----CCcEEEcccccCCCcc------------cCCEEE------C--CEEEEEeCCCEEEEE
Confidence 456777789999999984 3478997543221110 012111 1 123334444567778
Q ss_pred cC-CCCEEEEEeCCC-CCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 609 SP-GGSILTSIDLPA-PPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 609 s~-~G~vl~s~~Lp~-pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
|+ +|+++.+.+++. .-.+.|++. || .|+|.|.+| +|.|-
T Consensus 351 d~~tG~~~~~~~~~~~~~~s~P~~~----~~--~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 351 NREDGRFVAQQKVDSSGFLSEPVVA----DD--KLLIQARDGTVYAIT 392 (394)
T ss_pred ECCCCCEEEEEEcCCCcceeCCEEE----CC--EEEEEeCCceEEEEe
Confidence 95 999999999863 334455553 22 599999998 78764
No 3
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.95 E-value=0.0087 Score=65.18 Aligned_cols=28 Identities=7% Similarity=0.199 Sum_probs=22.9
Q ss_pred EEEEEEcCeEEEEEcC-Cchhhhhccccc
Q 005433 132 VLVVVTSGWSVMCFDH-NLNKLWEANLQE 159 (697)
Q Consensus 132 vIVVVt~dw~V~cf~h-nLk~lW~~~l~~ 159 (697)
.|+|.+.+..|+|||. +.+++|+.++..
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 3556778889999985 799999999864
No 4
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.75 E-value=0.0092 Score=55.78 Aligned_cols=73 Identities=22% Similarity=0.425 Sum_probs=52.5
Q ss_pred eEEccCCCCceeEEEecCCCeEEEEecccCCccccccccccceeecccccccccccCCceeEEeecccccccccCCCceE
Q 005433 52 IVADLNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQ 131 (697)
Q Consensus 52 iv~DldGDG~~evivaT~d~kl~v~~p~~~~~~~~f~~~~~~~e~Sll~~~~~~~~grrpVAlaaGy~~p~~~~~~~~~q 131 (697)
.+.|.||||.+||||+|.|.+|+||+ .+... +|++- . .+++.|.+=. ++
T Consensus 6 ~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~-----~Ei~e-~--------~~v~~L~~~~-----------~~ 54 (111)
T PF14783_consen 6 CLFDFDGDGENELLVGSDDFEIRVFK------GDEIV-----AEITE-T--------DKVTSLCSLG-----------GG 54 (111)
T ss_pred EEEecCCCCcceEEEecCCcEEEEEe------CCcEE-----EEEec-c--------cceEEEEEcC-----------CC
Confidence 47899999999999999999999998 33332 44442 1 2455554321 23
Q ss_pred EEEEEEcCeEEEEEcCCchhhhhcc
Q 005433 132 VLVVVTSGWSVMCFDHNLNKLWEAN 156 (697)
Q Consensus 132 vIVVVt~dw~V~cf~hnLk~lW~~~ 156 (697)
-.+.-+++.+|=+|+- .+.+|+..
T Consensus 55 ~F~Y~l~NGTVGvY~~-~~RlWRiK 78 (111)
T PF14783_consen 55 RFAYALANGTVGVYDR-SQRLWRIK 78 (111)
T ss_pred EEEEEecCCEEEEEeC-cceeeeec
Confidence 3778889999999965 67788875
No 5
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.38 E-value=0.091 Score=59.57 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=53.7
Q ss_pred cCceEEEecCCCCCCcceeeeeeccc---cccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC-C
Q 005433 536 NRGEVTAYSPGLHGHDAIWQWQLLTD---ATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-G 611 (697)
Q Consensus 536 s~G~VTs~~~~~~g~~~~~~Wq~~T~---a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~ 611 (697)
.+|.|+|++.. +|+.+|+...+ ..|... . ...-.++. -.+ .-+.+...+..+.-+|. +
T Consensus 364 ~~G~l~AlD~~----tG~~~W~~~~~~~~~~~~~g-------~-~~~~~~~~----~~g--~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 364 GKGGLAALDPK----TGKVVWEKREGTIRDSWNIG-------F-PHWGGSLA----TAG--NLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CceEEEEEeCC----CCcEeeEeeCCccccccccC-------C-cccCcceE----ecC--CeEEEECCCCeEEEEECCC
Confidence 57889999863 44899998765 123210 0 00001111 011 12333344567777884 9
Q ss_pred CCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe
Q 005433 612 GSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG 648 (697)
Q Consensus 612 G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G 648 (697)
|+++-+.+|+++-.++|++-.-+| .+.|.|.+|
T Consensus 426 G~~lW~~~~~~~~~a~P~~~~~~g----~~yv~~~~g 458 (488)
T cd00216 426 GKELWKFRTPSGIQATPMTYEVNG----KQYVGVMVG 458 (488)
T ss_pred CceeeEEECCCCceEcCEEEEeCC----EEEEEEEec
Confidence 999999999999999998654443 455555554
No 6
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=94.76 E-value=0.03 Score=41.77 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=17.9
Q ss_pred cEEeecCCCCcccEEE----ecCCe-EEEE
Q 005433 628 LVCEDFSNDGLTDVIL----MTSNG-VYGF 652 (697)
Q Consensus 628 ~iv~DfngDG~nDiIV----vT~~G-iygf 652 (697)
+-+.||||||..||+| .+..| +|.|
T Consensus 5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 5578999999999999 45554 5544
No 7
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.69 E-value=0.25 Score=47.91 Aligned_cols=114 Identities=23% Similarity=0.346 Sum_probs=72.8
Q ss_pred cCCCCceeEEEecCCCeEEEEecccCCccccccccccceeecccccccccccCCceeEEeecccccccccCCCceEEEEE
Q 005433 56 LNGDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVV 135 (697)
Q Consensus 56 ldGDG~~evivaT~d~kl~v~~p~~~~~~~~f~~~~~~~e~Sll~~~~~~~~grrpVAlaaGy~~p~~~~~~~~~qvIVV 135 (697)
+||.. +=|..||+-+||-|.+||.+..... ..-..+..++ -++.+.||++|.++| ..++-+.+
T Consensus 6 fDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~-~~~~~i~~LN---------in~~italaaG~l~~------~~~~D~Ll 68 (136)
T PF14781_consen 6 FDGVH-PCLACATTGGKVFIHNPHERGQRTG-RQDSDISFLN---------INQEITALAAGRLKP------DDGRDCLL 68 (136)
T ss_pred eCCCc-eeEEEEecCCEEEEECCCccccccc-cccCceeEEE---------CCCceEEEEEEecCC------CCCcCEEE
Confidence 45543 4789999999999999998622211 1122223333 377999999999998 45566677
Q ss_pred EEcCeEEEEEcC-CchhhhhccccccCCCCCcceeEEEEEeeceeccCCceEEEEeeeeccc
Q 005433 136 VTSGWSVMCFDH-NLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQ 196 (697)
Q Consensus 136 Vt~dw~V~cf~h-nLk~lW~~~l~~~~p~~~~~~EvsisIs~~~i~~~D~G~VIVGgr~e~~ 196 (697)
|-+.=+|+|||= |=+.+ .+.++|.+..- |.+- ++...+.=++||||.-..|
T Consensus 69 iGt~t~llaYDV~~N~d~----Fyke~~DGvn~----i~~g--~~~~~~~~l~ivGGncsi~ 120 (136)
T PF14781_consen 69 IGTQTSLLAYDVENNSDL----FYKEVPDGVNA----IVIG--KLGDIPSPLVIVGGNCSIQ 120 (136)
T ss_pred EeccceEEEEEcccCchh----hhhhCccceeE----EEEE--ecCCCCCcEEEECceEEEE
Confidence 777889999942 22222 23345654322 2222 5555678899999987554
No 8
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=94.49 E-value=0.042 Score=41.05 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=19.1
Q ss_pred CeEEccCCCCceeEEEe----cCCCeEEEE
Q 005433 51 PIVADLNGDGRKEVLVA----THDAKIQVL 76 (697)
Q Consensus 51 Piv~DldGDG~~eviva----T~d~kl~v~ 76 (697)
..+.|+||||+.||++. +..+++.||
T Consensus 5 ~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 5 VAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp EEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 35789999999999995 444666654
No 9
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.27 E-value=0.28 Score=59.20 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=56.9
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCC---c-cceEE--EeecceEEEEcC
Q 005433 537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHD---N-QQMIL--AGGDQEAVVISP 610 (697)
Q Consensus 537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~---~-~~~Il--A~Ge~~~~ils~ 610 (697)
-|.|+|+|..- ++..||...+-.=... |.|. ....|-=...+.. .+ + ...++ ++.+.++.-+|.
T Consensus 640 ~G~l~AiDl~t----Gk~~W~~~~g~~~~~~--p~~~---~~~~~~~~g~p~~-gG~l~TagglvF~~gt~d~~l~A~D~ 709 (764)
T TIGR03074 640 WGYMAAIDLKT----GKVVWQHPNGTVRDTG--PMGI---RMPLPIPIGVPTL-GGPLATAGGLVFIGATQDNYLRAYDL 709 (764)
T ss_pred cEEEEEEECCC----CcEeeeeECCcccccc--cccc---ccccccccCCccc-CCcEEEcCCEEEEEeCCCCEEEEEEC
Confidence 48999999753 4899998775221111 1110 0000000000111 11 1 23333 345778888885
Q ss_pred -CCCEEEEEeCCCCCCcccEEee-cCCCCcccEEEec
Q 005433 611 -GGSILTSIDLPAPPTHALVCED-FSNDGLTDVILMT 645 (697)
Q Consensus 611 -~G~vl~s~~Lp~pP~ap~iv~D-fngDG~nDiIVvT 645 (697)
+|++|=+.+||+...+.|+.=- . ||.-=|+|++
T Consensus 710 ~tGk~lW~~~l~~~~~a~P~tY~~~--~GkQYVvi~a 744 (764)
T TIGR03074 710 STGKELWKARLPAGGQATPMTYMGK--DGKQYVVIVA 744 (764)
T ss_pred CCCceeeEeeCCCCcccCCEEEEec--CCEEEEEEEe
Confidence 9999999999999999888764 4 6776666664
No 10
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.21 E-value=0.35 Score=55.84 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=45.6
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEE-eecceEEEEc-CCCCE
Q 005433 537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GGDQEAVVIS-PGGSI 614 (697)
Q Consensus 537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~Ge~~~~ils-~~G~v 614 (697)
.|.|+++|+. .+..+|+...+.-+ .|+. +...+ .++++ ..+-.+..+| .+|++
T Consensus 440 ~g~l~AiD~~----tGk~~W~~~~~~p~---------------~~~~----l~t~g--~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 440 MGSLIAWDPI----TGKIVWEHKEDFPL---------------WGGV----LATAG--DLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred ceeEEEEeCC----CCceeeEecCCCCC---------------CCcc----eEECC--cEEEEECCCCeEEEEECCCCCE
Confidence 6899999975 34799987654221 1111 11111 12323 3355788889 59999
Q ss_pred EEEEeCCCCCCcccEE
Q 005433 615 LTSIDLPAPPTHALVC 630 (697)
Q Consensus 615 l~s~~Lp~pP~ap~iv 630 (697)
|-+++|++...++||.
T Consensus 495 lw~~~~g~~~~a~P~t 510 (527)
T TIGR03075 495 LWKFKTGSGIVGPPVT 510 (527)
T ss_pred eEEEeCCCCceecCEE
Confidence 9999999999999986
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.95 E-value=0.49 Score=46.70 Aligned_cols=67 Identities=27% Similarity=0.265 Sum_probs=40.1
Q ss_pred EEEecCCCeEEEEecccCCccccccccccceeecccccccccccCCceeEEeecccccccccCCCceEEEEEEEcCeEEE
Q 005433 64 VLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVVTSGWSVM 143 (697)
Q Consensus 64 vivaT~d~kl~v~~p~~~~~~~~f~~~~~~~e~Sll~~~~~~~~grrpVAlaaGy~~p~~~~~~~~~qvIVVVt~dw~V~ 143 (697)
|++++.++.|..+++..+ .. +-+.++ ++.+... | ......|+|++.+-+|+
T Consensus 39 v~~~~~~~~l~~~d~~tG--~~-------~W~~~~-~~~~~~~--------------~-----~~~~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTG--KV-------LWRFDL-PGPISGA--------------P-----VVDGGRVYVGTSDGSLY 89 (238)
T ss_dssp EEEEETTSEEEEEETTTS--EE-------EEEEEC-SSCGGSG--------------E-----EEETTEEEEEETTSEEE
T ss_pred EEEEcCCCEEEEEECCCC--CE-------EEEeec-cccccce--------------e-----eecccccccccceeeeE
Confidence 666678899999996554 11 223333 2211111 2 12233446666777999
Q ss_pred EEc-CCchhhhhccccc
Q 005433 144 CFD-HNLNKLWEANLQE 159 (697)
Q Consensus 144 cf~-hnLk~lW~~~l~~ 159 (697)
|+| .+++++|+.....
T Consensus 90 ~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EEETTTSCEEEEEEE-S
T ss_pred ecccCCcceeeeecccc
Confidence 998 9999999954433
No 12
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.17 E-value=0.21 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEeeecCCccceeccccCCCc
Q 005433 238 FAFYAFAGRSGLLRWSRKNENI 259 (697)
Q Consensus 238 fsyyAf~g~tG~~RW~h~~~df 259 (697)
-..||||.+||++.|+++.++.
T Consensus 10 g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp SEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEEECCCCCEEEeeeCCCC
Confidence 3689999999999999998853
No 13
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=90.07 E-value=0.33 Score=55.04 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=38.9
Q ss_pred CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 611 GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 611 ~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
+|.++-...|.+ |+|.++.+|+-+||.+++|++|.|| |-||.
T Consensus 1 tGeVlfKd~~~s-~VA~vv~~DYR~dG~~~lI~csvdGeVrGy~ 43 (431)
T PF14782_consen 1 TGEVLFKDTFSS-PVAGVVVADYRMDGKPQLICCSVDGEVRGYL 43 (431)
T ss_pred CceEEEEecccc-hhheeeeeccccCCCceEEEEEcCCEEEEec
Confidence 588898888988 8999999999999999999999999 99993
No 14
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=90.00 E-value=0.27 Score=39.71 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=17.4
Q ss_pred ccCCCCceeEEEecCCCeEEEEe
Q 005433 55 DLNGDGRKEVLVATHDAKIQVLE 77 (697)
Q Consensus 55 DldGDG~~evivaT~d~kl~v~~ 77 (697)
|+||||++||+++. ++++.+|.
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~ 22 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYL 22 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEE
T ss_pred CCCCCCCccEEEEe-CCCeEEEE
Confidence 89999999999998 77888886
No 15
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.89 E-value=1.9 Score=46.40 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=60.7
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC
Q 005433 531 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 610 (697)
Q Consensus 531 ~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~ 610 (697)
+++...+|.|.|++.. +|...|+.+++...... |.+ +...++++..+..+.-+|.
T Consensus 68 v~v~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~-------------p~v--------~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 68 VYAADADGTVVALDAE----TGKRLWRVDLDERLSGG-------------VGA--------DGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred EEEECCCCeEEEEEcc----CCcEeeeecCCCCcccc-------------eEE--------cCCEEEEEcCCCEEEEEEC
Confidence 4455566999999953 34899998777533211 111 1123444455567788885
Q ss_pred -CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 611 -GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 611 -~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
+|+++-+..++.++.++|++.| + -+++.+.+| +|+|-
T Consensus 123 ~tG~~~W~~~~~~~~~~~p~v~~----~--~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 123 EDGKELWRAKLSSEVLSPPLVAN----G--LVVVRTNDGRLTALD 161 (377)
T ss_pred CCCcEeeeeccCceeecCCEEEC----C--EEEEECCCCeEEEEE
Confidence 9999999999988888888742 2 266667776 77773
No 16
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.80 E-value=17 Score=42.26 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=43.1
Q ss_pred eEEEEcC-CCCEEEEEeCCC------CCCcccEEeecCCCCc-ccEE-EecCCeEEEEEEeecCCchh
Q 005433 604 EAVVISP-GGSILTSIDLPA------PPTHALVCEDFSNDGL-TDVI-LMTSNGVYGFVQTRQPGALF 662 (697)
Q Consensus 604 ~~~ils~-~G~vl~s~~Lp~------pP~ap~iv~DfngDG~-nDiI-VvT~~Giygfv~~~~~g~~~ 662 (697)
+++-||. +|++.=.++.-. =..++|++.|++.||. -+++ +.|++| +-|++-|.+|-.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-eEEEEECCCCcee
Confidence 6777785 899988877733 3567888889877775 3555 777788 5699999999654
No 17
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=89.34 E-value=0.32 Score=39.30 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=18.6
Q ss_pred ecCCCCcccEEEecCCeEEEEEEee
Q 005433 632 DFSNDGLTDVILMTSNGVYGFVQTR 656 (697)
Q Consensus 632 DfngDG~nDiIVvT~~Giygfv~~~ 656 (697)
||||||..||++.....++-|.+..
T Consensus 1 D~ngDG~~Div~~~~~~~~~~~~~~ 25 (61)
T PF13517_consen 1 DFNGDGRPDIVVANDGSVYVYLNDG 25 (61)
T ss_dssp -SSSSSS-EEEEE-SSSEEEEEB-S
T ss_pred CCCCCCCccEEEEeCCCeEEEEECC
Confidence 8999999999999977788887764
No 18
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.11 E-value=36 Score=37.93 Aligned_cols=201 Identities=14% Similarity=0.209 Sum_probs=118.5
Q ss_pred ccceeEEEccCCCeeEEEecCCC-------------------Cee-eeccCCCceeEEEeeccCCceeeeecCCcccCcC
Q 005433 401 KEGIEAVHLASGRTVCKLHLQEG-------------------GLH-ADINGDGVLDHVQAVGGNGAEQTVVSGSMEVLRP 460 (697)
Q Consensus 401 ~~GIEViHL~SGrtlckl~L~~~-------------------~l~-aDINgDGvlD~V~~~~g~~~e~~~~~g~~~~~~~ 460 (697)
..-|+|+.++|++++-++.+++. -+| ++++.|..|--|-+..+.-..+. ..++
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------~vp~ 148 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------DVPD 148 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------eCCC
Confidence 46799999999999998887332 244 46666666655554333333222 2377
Q ss_pred eEEEEeecCCccccceeccccCCCCCCcccCCccccCCCCCCCCCccccccceEE--------eCCCCCCCCccccccEE
Q 005433 461 CWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILI--------PRSDGHRHRKGSHGDVV 532 (697)
Q Consensus 461 C~a~atSGvP~re~LFn~siC~~~~f~~f~~~~~~~~~~~~~d~~~lev~~Pl~i--------~~~~g~~~r~~~~~D~v 532 (697)
|+.+-.+ .|.=|- .+|....+.....+ .+ +...+.+..++ .++ .- ....+-.+
T Consensus 149 ~~~vy~t----~e~~~~-~~~~Dg~~~~v~~d---------~~-g~~~~~~~~vf~~~~~~v~~rP--~~--~~~dg~~~ 209 (352)
T TIGR02658 149 CYHIFPT----ANDTFF-MHCRDGSLAKVGYG---------TK-GNPKIKPTEVFHPEDEYLINHP--AY--SNKSGRLV 209 (352)
T ss_pred CcEEEEe----cCCccE-EEeecCceEEEEec---------CC-CceEEeeeeeecCCccccccCC--ce--EcCCCcEE
Confidence 9888665 355555 78876654222111 00 11111111111 111 00 01124678
Q ss_pred EEecCceEEEecCCCCCCcceeeeeecccc----ccccCCCCCCCCccceeeeeeEEeecccCCccceEEE---------
Q 005433 533 FLTNRGEVTAYSPGLHGHDAIWQWQLLTDA----TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA--------- 599 (697)
Q Consensus 533 FL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a----~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA--------- 599 (697)
|.++.|.|+-++.++.+-.....|.+.+.+ .|... | .+++.+.+.+..=|+++
T Consensus 210 ~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~----g----------~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 210 WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG----G----------WQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred EEecCCeEEEEecCCCcceecceeeeccccccccccCCC----c----------ceeEEEcCCCCEEEEEecCCcccccc
Confidence 999999999999766544445667765543 45442 1 22355556666666665
Q ss_pred eecceEEEEcC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEec
Q 005433 600 GGDQEAVVISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMT 645 (697)
Q Consensus 600 ~Ge~~~~ils~-~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT 645 (697)
.|..++.++|. ++++++.+++...|- -.-|+.||..=+.+..
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~~~----~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHEID----SINVSQDAKPLLYALS 318 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCcee----eEEECCCCCeEEEEeC
Confidence 45579999995 999999999976432 3347777765555444
No 19
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.92 E-value=1.7 Score=47.24 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=49.8
Q ss_pred EEEEEEcCeEEEEEcCCchh-hhhccccc--cCCCCCcceeEEEEEeeceeccCCceEEEEeeeecccCCCCCChhhhhh
Q 005433 132 VLVVVTSGWSVMCFDHNLNK-LWEANLQE--DFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIG 208 (697)
Q Consensus 132 vIVVVt~dw~V~cf~hnLk~-lW~~~l~~--~~p~~~~~~EvsisIs~~~i~~~D~G~VIVGgr~e~~~~~~~d~f~e~~ 208 (697)
.|.|-+.++.|.|||.+... +|+..+.. .... .|... ..|.|.+|...
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-----------~~~~~---~~G~i~~g~~~--------------- 120 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-----------GPILG---SDGKIYVGSWD--------------- 120 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-----------CceEE---eCCeEEEeccc---------------
Confidence 34445888999999888855 89999886 1111 11111 16778888333
Q ss_pred hhhhhhhhhhcchhhhhhcccCCCcccceeEEeeecCCccceeccccCCC
Q 005433 209 LAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNEN 258 (697)
Q Consensus 209 ~~~~~~e~hr~~~~~k~~~~~~g~~~~~HfsyyAf~g~tG~~RW~h~~~d 258 (697)
| .|||||..||+..|+++-.+
T Consensus 121 ----------------------g-------~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 121 ----------------------G-------KLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred ----------------------c-------eEEEEECCCCcEEEEEecCC
Confidence 2 89999999999999999887
No 20
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.70 E-value=7.7 Score=44.25 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=55.4
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
+.++|.+.+|.|.|++.. .|+.+|+.++....... .|.+..-+.-..+...++++..+..+.-+
T Consensus 62 g~vy~~~~~g~l~AlD~~----tG~~~W~~~~~~~~~~~------------~~~~~~~g~~~~~~~~V~v~~~~g~v~Al 125 (488)
T cd00216 62 GDMYFTTSHSALFALDAA----TGKVLWRYDPKLPADRG------------CCDVVNRGVAYWDPRKVFFGTFDGRLVAL 125 (488)
T ss_pred CEEEEeCCCCcEEEEECC----CChhhceeCCCCCcccc------------ccccccCCcEEccCCeEEEecCCCeEEEE
Confidence 345566668999999963 34899998876541110 00000001101112456666677778888
Q ss_pred cC-CCCEEEEEeCCCC------CCcccEEee
Q 005433 609 SP-GGSILTSIDLPAP------PTHALVCED 632 (697)
Q Consensus 609 s~-~G~vl~s~~Lp~p------P~ap~iv~D 632 (697)
|. +|+++-.++++.+ ..++|++.|
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~ 156 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVK 156 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEEC
Confidence 95 9999999999876 567777775
No 21
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=83.59 E-value=3.3 Score=44.21 Aligned_cols=77 Identities=30% Similarity=0.556 Sum_probs=55.1
Q ss_pred eEEccCCCCceeEEEec-----CCCeEEEEecccCCccccccccccceeecccccccccccCCceeEEeecccccccccC
Q 005433 52 IVADLNGDGRKEVLVAT-----HDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDRTYRQG 126 (697)
Q Consensus 52 iv~DldGDG~~evivaT-----~d~kl~v~~p~~~~~~~~f~~~~~~~e~Sll~~~~~~~~grrpVAlaaGy~~p~~~~~ 126 (697)
-++||+|||-+=+|+|. .+.||.||+ .. .+..|..| || -|+||++=|.+. .
T Consensus 21 ~l~Dl~gDGd~kLvvaD~g~~~~~~kLKVyk------Gt-----~l~~E~~L-~d--------~P~ai~sFy~d~----~ 76 (257)
T PF14779_consen 21 ALADLQGDGDYKLVVADLGTGDQNMKLKVYK------GT-----SLISEITL-PD--------LPSAIVSFYMDE----H 76 (257)
T ss_pred EeeecCCCCeEEEEEEecCCcCCCceEEEEc------CC-----Chhhcccc-cC--------CCeEEEEEeccC----C
Confidence 36899999999999999 457999997 22 23367776 65 799999999887 2
Q ss_pred CCceEEEEEEEcCeEEEEEcCCchhhhh
Q 005433 127 QPLKQVLVVVTSGWSVMCFDHNLNKLWE 154 (697)
Q Consensus 127 ~~~~qvIVVVt~dw~V~cf~hnLk~lW~ 154 (697)
+++.. ++.|-++=.|+.| .|||...+
T Consensus 77 ep~~P-~iAVA~G~~vyiY-kNlkP~yK 102 (257)
T PF14779_consen 77 EPRTP-AIAVAAGPSVYIY-KNLKPFYK 102 (257)
T ss_pred CCCCC-eEEEEeCCEEEEE-ecccceee
Confidence 45555 4555667778877 34554443
No 22
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=78.24 E-value=49 Score=32.57 Aligned_cols=102 Identities=20% Similarity=0.356 Sum_probs=57.3
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeee-ccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQL-LTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 607 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~-~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 607 (697)
..+++.+.+|.|.+++.. +|...|+. .+....... . ....|.+. .+.++++.....+..
T Consensus 77 ~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~-------~-~~~~~~~~--------~~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGV-------R-SSSSPAVD--------GDRLYVGTSSGKLVA 136 (238)
T ss_dssp TEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCST-------B---SEEEEE--------TTEEEEEETCSEEEE
T ss_pred cccccccceeeeEecccC----Ccceeeeecccccccccc-------c-cccCceEe--------cCEEEEEeccCcEEE
Confidence 566777788999999932 44899994 444211110 0 01112211 334455554788999
Q ss_pred Ec-CCCCEEEEEeCCCCCCcccE--EeecC-----CCCcccEEEecCCe-EEEE
Q 005433 608 IS-PGGSILTSIDLPAPPTHALV--CEDFS-----NDGLTDVILMTSNG-VYGF 652 (697)
Q Consensus 608 ls-~~G~vl~s~~Lp~pP~ap~i--v~Dfn-----gDG~nDiIVvT~~G-iygf 652 (697)
+| .+|+++-..+++.++..-.+ +.|.+ .+| .|.+.+.+| ++.+
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV 188 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE
Confidence 99 59999999999776632221 11111 133 666666677 4444
No 23
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.98 E-value=2.1 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=15.2
Q ss_pred eEEeeecCCccceeccc
Q 005433 238 FAFYAFAGRSGLLRWSR 254 (697)
Q Consensus 238 fsyyAf~g~tG~~RW~h 254 (697)
-..||+|.+||+.+|+.
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 46899999999999985
No 24
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.09 E-value=4.6 Score=43.88 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=24.4
Q ss_pred EEEEEcCeEEEEEcC-Cchhhhhccccc
Q 005433 133 LVVVTSGWSVMCFDH-NLNKLWEANLQE 159 (697)
Q Consensus 133 IVVVt~dw~V~cf~h-nLk~lW~~~l~~ 159 (697)
|.+=+.+..++|||. +..++|+..+..
T Consensus 114 i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 114 IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred EEEecccceEEEEECCCCcEEEEEecCC
Confidence 777788889999988 999999999988
No 25
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=73.33 E-value=8.2 Score=41.26 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=47.2
Q ss_pred CCccceEEEeecceEEEEcCCC-CEEEEEeCCCCCCcccEEeecC-CCCcccEEEecCCe-EE
Q 005433 591 HDNQQMILAGGDQEAVVISPGG-SILTSIDLPAPPTHALVCEDFS-NDGLTDVILMTSNG-VY 650 (697)
Q Consensus 591 ~~~~~~IlA~Ge~~~~ils~~G-~vl~s~~Lp~pP~ap~iv~Dfn-gDG~nDiIVvT~~G-iy 650 (697)
+..+-.||++-..++-|||+.| .++.++.||+.|+.=...+-|+ .|.. |+|.|-+| ||
T Consensus 193 ~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR--I~Va~Rdg~iy 253 (257)
T PF14779_consen 193 DAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR--IVVACRDGKIY 253 (257)
T ss_pred CCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE--EEEEeCCCEEE
Confidence 3456789999999999999877 8899999999999766666665 5553 89999998 44
No 26
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=68.54 E-value=32 Score=39.26 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=47.9
Q ss_pred CccceEEEeecceEEEEcCCCCEEEEEeCCCCCCcccEEee--cCCCC-cccEEEecCCe-EEEE
Q 005433 592 DNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCED--FSNDG-LTDVILMTSNG-VYGF 652 (697)
Q Consensus 592 ~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~D--fngDG-~nDiIVvT~~G-iygf 652 (697)
+..+.|++-|++.+.+++.+|.+..+.+|..+|++=-.+.= -+..+ -+=+||.|.++ +..|
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy 315 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY 315 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence 37799999999999999999999999999998887665443 33322 12388899887 7777
No 27
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=66.76 E-value=6.5 Score=37.13 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=22.0
Q ss_pred eEEccCCCCceeEEEecCCCeEEE
Q 005433 52 IVADLNGDGRKEVLVATHDAKIQV 75 (697)
Q Consensus 52 iv~DldGDG~~evivaT~d~kl~v 75 (697)
...|+||||.+|||+.=++|||.+
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEEe
Confidence 568999999999999999999975
No 28
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.79 E-value=20 Score=40.80 Aligned_cols=57 Identities=18% Similarity=0.382 Sum_probs=44.1
Q ss_pred eEEccC--CCCceeEEEecCCCeEEEEecccCCccccccccccceeecccccccccccCCceeEEeeccccc
Q 005433 52 IVADLN--GDGRKEVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVSLLPDKIRIASGRRAVAMATGVIDR 121 (697)
Q Consensus 52 iv~Dld--GDG~~evivaT~d~kl~v~~p~~~~~~~~f~~~~~~~e~Sll~~~~~~~~grrpVAlaaGy~~p 121 (697)
.|+++| .+|+.-|||.+..|.|+||+|. ..+|....++-|..| +-.++.|++|+.-+
T Consensus 26 ~v~~~~~~~~~~d~IivGS~~G~LrIy~P~----~~~~~~~~lllE~~l---------~~PILqv~~G~F~s 84 (418)
T PF14727_consen 26 CVGNLDNSPSGSDKIIVGSYSGILRIYDPS----GNEFQPEDLLLETQL---------KDPILQVECGKFVS 84 (418)
T ss_pred EEEcccCCCCCccEEEEeccccEEEEEccC----CCCCCCccEEEEEec---------CCcEEEEEeccccC
Confidence 467776 4788899999999999999983 445665567778876 33789999998743
No 29
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=59.92 E-value=7 Score=38.73 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=21.8
Q ss_pred EEeCCCCCCc-----ccEEeecCCCCcccEEEecCC
Q 005433 617 SIDLPAPPTH-----ALVCEDFSNDGLTDVILMTSN 647 (697)
Q Consensus 617 s~~Lp~pP~a-----p~iv~DfngDG~nDiIVvT~~ 647 (697)
.+.+|.||.- ..-+.||||||+.|++. +..
T Consensus 11 ~~~~~~p~~~~~~~~~~~~~DinGdG~~dlv~-~~~ 45 (175)
T PF12256_consen 11 PVTIPLPPGDSYDLSQVSVADINGDGTADLVW-SSP 45 (175)
T ss_pred cccccCCCcccccccEEEEEEeCCCCCEEEEE-ecC
Confidence 4445555444 46899999999999999 444
No 30
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=57.12 E-value=6 Score=32.23 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=19.1
Q ss_pred EeecCCCCcccEEEecC--------CeEEEEEEee
Q 005433 630 CEDFSNDGLTDVILMTS--------NGVYGFVQTR 656 (697)
Q Consensus 630 v~DfngDG~nDiIVvT~--------~Giygfv~~~ 656 (697)
+.|+|+||..||+|-.- ..+|.|-...
T Consensus 12 ~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~~ 46 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGSS 46 (58)
T ss_pred ccccCCCCccCEEEeCcccCCCCCCCEEEEEEecC
Confidence 68999999999877422 3366665543
No 31
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=51.16 E-value=5.7 Score=27.07 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.6
Q ss_pred eccCCCceeEE
Q 005433 428 DINGDGVLDHV 438 (697)
Q Consensus 428 DINgDGvlD~V 438 (697)
|+||||.||.+
T Consensus 1 DvN~DG~vna~ 11 (21)
T PF00404_consen 1 DVNGDGKVNAI 11 (21)
T ss_dssp -TTSSSSSSHH
T ss_pred CCCCCCcCCHH
Confidence 89999999864
No 32
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=50.85 E-value=37 Score=34.41 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=35.6
Q ss_pred ecceEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 005433 601 GDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS 646 (697)
Q Consensus 601 Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~ 646 (697)
+...+.++|++|+++..+++|.+ .|.-.-|-|+..+.|.|.|.
T Consensus 203 ~~~~I~~~~p~G~~~~~i~~p~~---~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLREIELPVP---RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTTEEEEEETTSCEEEEEE-SSS---SEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEECCCccEEEEEcCCCC---CEEEEEEECCCCCEEEEEeC
Confidence 77889999999999999999943 56677788888888988885
No 33
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=44.58 E-value=14 Score=30.15 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=15.4
Q ss_pred EEccCCCCceeEEEecCC
Q 005433 53 VADLNGDGRKEVLVATHD 70 (697)
Q Consensus 53 v~DldGDG~~evivaT~d 70 (697)
+.|+||||..||++....
T Consensus 12 ~~d~ngDg~~dl~vGAP~ 29 (58)
T smart00191 12 VGDVNGDGYPDLLVGAPR 29 (58)
T ss_pred ccccCCCCccCEEEeCcc
Confidence 579999999999997654
No 34
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.99 E-value=1.8e+02 Score=31.75 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=33.3
Q ss_pred Eeecc--eEEEEcCCCCEEEEEeCC-CCCCcccEEeecCCCCcccEEEecCC
Q 005433 599 AGGDQ--EAVVISPGGSILTSIDLP-APPTHALVCEDFSNDGLTDVILMTSN 647 (697)
Q Consensus 599 A~Ge~--~~~ils~~G~vl~s~~Lp-~pP~ap~iv~DfngDG~nDiIVvT~~ 647 (697)
+..+. .+++.+++|+++..++|| ..|+.+-. -|...++|.|.+..
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~F----gG~~~~~L~iTs~~ 276 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAF----GGPDLNTLYITSAR 276 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCCCCccceE----eCCCcCEEEEEecC
Confidence 55554 789999999999999999 55555543 34557777777665
No 35
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=41.14 E-value=23 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=17.8
Q ss_pred CCeEEccCCCCceeEEEecCCC
Q 005433 50 PPIVADLNGDGRKEVLVATHDA 71 (697)
Q Consensus 50 ~Piv~DldGDG~~evivaT~d~ 71 (697)
.--++|+||||..|++......
T Consensus 26 ~~~~~DinGdG~~dlv~~~~~~ 47 (175)
T PF12256_consen 26 QVSVADINGDGTADLVWSSPSS 47 (175)
T ss_pred EEEEEEeCCCCCEEEEEecCCc
Confidence 4578999999999999955443
No 36
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=41.06 E-value=28 Score=32.40 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.2
Q ss_pred EEccCCCeeEEEe-cCCC----CeeeeccCCCceeEE
Q 005433 407 VHLASGRTVCKLH-LQEG----GLHADINGDGVLDHV 438 (697)
Q Consensus 407 iHL~SGrtlckl~-L~~~----~l~aDINgDGvlD~V 438 (697)
+....|..-|.+. |++| ..|+|.|+||.||.-
T Consensus 36 ~~~~~~~~~~~f~~lp~G~YAi~v~hD~N~NgklD~n 72 (112)
T PF09912_consen 36 VPAKGGTVTITFEDLPPGTYAIAVFHDENGNGKLDTN 72 (112)
T ss_pred EEcCCCcEEEEECCCCCccEEEEEEEeCCCCCcCCcC
Confidence 4456688888986 7776 456899999999975
No 37
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=37.22 E-value=37 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.6
Q ss_pred ceEEEEEEEcCeEEEEEcCCchhhhh
Q 005433 129 LKQVLVVVTSGWSVMCFDHNLNKLWE 154 (697)
Q Consensus 129 ~~qvIVVVt~dw~V~cf~hnLk~lW~ 154 (697)
..-.|+++|++.+|.+|.-|.+++|+
T Consensus 22 ~mdLiA~~t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 22 TMDLIALGTEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred CCCEEEEEECCCeEEEEECCCcCccC
Confidence 56699999999999999889999995
No 38
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=37.08 E-value=31 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.4
Q ss_pred EEEEEEcCeEEEEEcC-Cchhhhhc
Q 005433 132 VLVVVTSGWSVMCFDH-NLNKLWEA 155 (697)
Q Consensus 132 vIVVVt~dw~V~cf~h-nLk~lW~~ 155 (697)
.+++.+.+..++|+|. +.+.+|+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999966 88999985
No 39
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=36.21 E-value=31 Score=39.49 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.0
Q ss_pred cCCCCeEEccCCCCceeEEEecCCCeEEEEe
Q 005433 47 RLPPPIVADLNGDGRKEVLVATHDAKIQVLE 77 (697)
Q Consensus 47 ~lp~Piv~DldGDG~~evivaT~d~kl~v~~ 77 (697)
.++-=+..|+=.||++++|+.|.||+|+.|.
T Consensus 13 ~VA~vv~~DYR~dG~~~lI~csvdGeVrGy~ 43 (431)
T PF14782_consen 13 PVAGVVVADYRMDGKPQLICCSVDGEVRGYL 43 (431)
T ss_pred hhheeeeeccccCCCceEEEEEcCCEEEEec
Confidence 3445578899999999999999999999993
No 40
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=33.97 E-value=3.2e+02 Score=30.70 Aligned_cols=92 Identities=22% Similarity=0.371 Sum_probs=51.0
Q ss_pred cCcCeEEEEeecCCccccceeccccCCCCCCcccCCccccCCCCCCCCCccccccceEEeCCC---CCCCCccccccEEE
Q 005433 457 VLRPCWAVATSGVPVREQLFNASICHHSPFNLFPHGEFSRNFGRTSDVASLEVATPILIPRSD---GHRHRKGSHGDVVF 533 (697)
Q Consensus 457 ~~~~C~a~atSGvP~re~LFn~siC~~~~f~~f~~~~~~~~~~~~~d~~~lev~~Pl~i~~~~---g~~~r~~~~~D~vF 533 (697)
..+.||.+--+| +.=|. ++|..+.+.-+...+ .|.+ . +..++++.+-.+ .+.-..+..+-.+|
T Consensus 135 ~~PGC~~iyP~~----~~~F~-~lC~DGsl~~v~Ld~------~Gk~--~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 135 DTPGCWLIYPSG----NRGFS-MLCGDGSLLTVTLDA------DGKE--A-QKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp EGTSEEEEEEEE----TTEEE-EEETTSCEEEEEETS------TSSE--E-EEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred cCCCEEEEEecC----CCceE-EEecCCceEEEEECC------CCCE--e-EeeccccCCCCcccccccceECCCCeEEE
Confidence 348999998775 34577 999988853332210 1111 0 222232222111 01101123356899
Q ss_pred EecCceEEEecCCCCCCcceeeeeecccc
Q 005433 534 LTNRGEVTAYSPGLHGHDAIWQWQLLTDA 562 (697)
Q Consensus 534 L~s~G~VTs~~~~~~g~~~~~~Wq~~T~a 562 (697)
.+=+|.|-..+-++-+-.....|.+-|++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred EecCCEEEEEeccCCcccccCcccccCcc
Confidence 99999999998877444555677776653
No 41
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.85 E-value=3e+02 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=23.7
Q ss_pred cEEEEecCceEEEecCCCCCCcceeeeeeccc-ccc
Q 005433 530 DVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTD-ATW 564 (697)
Q Consensus 530 D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~-a~W 564 (697)
.++--+=+|.+||+++.| ++.||-.|. +-|
T Consensus 191 sv~i~~VdG~l~~f~~sG-----~qvwr~~t~GpIf 221 (354)
T KOG4649|consen 191 SVIITTVDGVLTSFDESG-----RQVWRPATKGPIF 221 (354)
T ss_pred eEEEEEeccEEEEEcCCC-----cEEEeecCCCcee
Confidence 355556789999999987 899998876 556
No 42
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=32.02 E-value=86 Score=35.32 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=38.3
Q ss_pred eEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeE-EEE
Q 005433 604 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGV-YGF 652 (697)
Q Consensus 604 ~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Gi-ygf 652 (697)
.+.|.+.+|++|.++.++. .++|...|+.+ .++||++++|. .-|
T Consensus 62 ~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~--e~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS---GRIVGMGWTDD--EELVVVQSDGTVRVY 106 (410)
T ss_pred EEEEECCCCCEeEEEEECC---CCEEEEEECCC--CeEEEEEcCCEEEEE
Confidence 4888899999999999988 89999999884 78999999994 444
No 43
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=31.49 E-value=12 Score=35.17 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=10.8
Q ss_pred CCeeeeccCCCce
Q 005433 423 GGLHADINGDGVL 435 (697)
Q Consensus 423 ~~l~aDINgDGvl 435 (697)
..++.||||||+|
T Consensus 96 ~~F~qDlNgDG~I 108 (109)
T PF07483_consen 96 TSFHQDLNGDGTI 108 (109)
T ss_pred HHhCccccCCCcC
Confidence 4677899999986
No 44
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=30.52 E-value=4.1e+02 Score=32.50 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=72.6
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
+-+.+|-++|.++|=+. |. ..+|++..+.--.-. | ...++=|++ .-..+..|+.+||+.-+-+
T Consensus 183 RgL~vl~~~~flScsND-g~----Ir~w~~~ge~l~~~~----g---htn~vYsis-----~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSND-GS----IRLWDLDGEVLLEMH----G---HTNFVYSIS-----MALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred eeeEEecCCCeEeecCC-ce----EEEEeccCceeeeee----c---cceEEEEEE-----ecCCCCeEEEecCCceEEE
Confidence 44678888888887654 32 788998433322211 1 123333443 3446789999999988888
Q ss_pred cCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEEe--ecCCchhHH
Q 005433 609 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQT--RQPGALFFS 664 (697)
Q Consensus 609 s~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv~~--~~~g~~~~s 664 (697)
=.++...+.+.||+-.+=-.-+-+ || ||+|.++|| ||.|-+. |..+.+.+=
T Consensus 246 W~~~e~~q~I~lPttsiWsa~~L~-Ng----DIvvg~SDG~VrVfT~~k~R~As~evl~ 299 (745)
T KOG0301|consen 246 WKKDECVQVITLPTTSIWSAKVLL-NG----DIVVGGSDGRVRVFTVDKDRKASDEVLK 299 (745)
T ss_pred eecCceEEEEecCccceEEEEEee-CC----CEEEeccCceEEEEEecccccCCHHHHH
Confidence 777799999999985443222211 33 799999999 7777665 346655433
No 45
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=1e+02 Score=38.41 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=72.6
Q ss_pred ccccceEEeCCCCCCCCccccccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEee
Q 005433 508 EVATPILIPRSDGHRHRKGSHGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFS 587 (697)
Q Consensus 508 ev~~Pl~i~~~~g~~~r~~~~~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~ 587 (697)
+..+|+|.+..++...+-+...-.+|.+..|.++ ......|+..|.
T Consensus 200 ~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~----------------~~~~l~ws~~P~------------------ 245 (877)
T KOG2063|consen 200 ESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIA----------------QRGTLVWSEVPL------------------ 245 (877)
T ss_pred ccCCCeEEEecCCceEEEccCceEEEEecCCccc----------------CCCceEecccch------------------
Confidence 4568999988766444445556777777777554 224455555421
Q ss_pred cccCCccceEEEeecceEEEEc-CCCCEEEEE-eCCCCCCcccEEeecCCCCcccEEEecC-CeEEEEEEeec
Q 005433 588 LRVHDNQQMILAGGDQEAVVIS-PGGSILTSI-DLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGFVQTRQ 657 (697)
Q Consensus 588 lr~~~~~~~IlA~Ge~~~~ils-~~G~vl~s~-~Lp~pP~ap~iv~DfngDG~nDiIVvT~-~Giygfv~~~~ 657 (697)
...-..|||+|.+...+-|-| .+|..+.|+ +|+..+. +.+.++ -+|++++ +++|-++-+..
T Consensus 246 -~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~~~~~----l~s~~~----~i~~~~~~s~v~~L~p~~~ 309 (877)
T KOG2063|consen 246 -SVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLSNGRS----LLSAHN----GIIFVASLSNVWILVPVSN 309 (877)
T ss_pred -hhcccCceEEEEccccEEEEeccCHHHhhccccccccce----eeecCC----cEEEEEeccceEEEEeccc
Confidence 133467999999999999999 488888888 6655432 222222 7888888 89999887774
No 46
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=27.47 E-value=55 Score=28.43 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=33.6
Q ss_pred eEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEEee
Q 005433 604 EAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQTR 656 (697)
Q Consensus 604 ~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giygfv~~~ 656 (697)
.+.|.|.+|+++.+++|+..+.. ...|.=||.++==-.-.+|.|-|..+.
T Consensus 28 ~v~I~d~~G~~V~t~~~~~~~~G---~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISLGSQSAG---EHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEEEETTS-EEEEEEEEECSSE---EEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEcCCcCCc---eEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 67888999999999999666553 456777877775556678888886654
No 47
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=36 Score=33.51 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=21.7
Q ss_pred cCCCeeEEEe--cCCCCe----eeeccCCCceeE
Q 005433 410 ASGRTVCKLH--LQEGGL----HADINGDGVLDH 437 (697)
Q Consensus 410 ~SGrtlckl~--L~~~~l----~aDINgDGvlD~ 437 (697)
.+|.++.+.. |++|.| +.|.||||-||-
T Consensus 72 it~dpv~~~f~~Lk~G~YAvaa~qD~nGdgkldt 105 (151)
T COG4704 72 ITGDPVSKSFYGLKPGKYAVAAFQDENGDGKLDT 105 (151)
T ss_pred ccCCchhheeecCCCccEEEEEEEecCCCccccc
Confidence 4788888855 788754 469999999874
No 48
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=26.23 E-value=70 Score=22.97 Aligned_cols=19 Identities=16% Similarity=0.414 Sum_probs=15.8
Q ss_pred EEeecceEEEEcCCCCEEE
Q 005433 598 LAGGDQEAVVISPGGSILT 616 (697)
Q Consensus 598 lA~Ge~~~~ils~~G~vl~ 616 (697)
||.|+.+.++|+.+|++..
T Consensus 4 ia~G~~ht~al~~~g~v~~ 22 (30)
T PF13540_consen 4 IACGGYHTCALTSDGEVYC 22 (30)
T ss_dssp EEEESSEEEEEE-TTEEEE
T ss_pred EEecCCEEEEEEcCCCEEE
Confidence 7899999999999998754
No 49
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=25.77 E-value=1.3e+02 Score=38.21 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=53.9
Q ss_pred ccccCCCCCCCCccceeeeeeEEeecccCCccceEEEe--------ecceEEEE--cC-CCCEEE--EEeCCCCC-----
Q 005433 563 TWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAG--------GDQEAVVI--SP-GGSILT--SIDLPAPP----- 624 (697)
Q Consensus 563 ~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~--------Ge~~~~il--s~-~G~vl~--s~~Lp~pP----- 624 (697)
.|.......|.--+.+|=-||.+-=+..+|..++|++. ++.-.|-+ .. .|..-. ++.+|.+|
T Consensus 307 ~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG 386 (1030)
T KOG3637|consen 307 SLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFG 386 (1030)
T ss_pred ccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchh
Confidence 56555444432112566778888888888877755442 12222222 22 343322 23444443
Q ss_pred CcccEEeecCCCCcccEEEecC------CeEEEEEEee
Q 005433 625 THALVCEDFSNDGLTDVILMTS------NGVYGFVQTR 656 (697)
Q Consensus 625 ~ap~iv~DfngDG~nDiIVvT~------~Giygfv~~~ 656 (697)
.|=--++|+|+||.|||.|--- +-||.|--..
T Consensus 387 ~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~ 424 (1030)
T KOG3637|consen 387 SALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSK 424 (1030)
T ss_pred hhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCC
Confidence 2344578999999999999743 2389995443
No 50
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.57 E-value=2.2e+02 Score=35.40 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.0
Q ss_pred eEEEEEEEcCeEEEEE-cCCchhhhhccccccC
Q 005433 130 KQVLVVVTSGWSVMCF-DHNLNKLWEANLQEDF 161 (697)
Q Consensus 130 ~qvIVVVt~dw~V~cf-~hnLk~lW~~~l~~~~ 161 (697)
.+.|+|+|++..++|+ .-+.+.+|+..|.+..
T Consensus 451 ~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~ 483 (910)
T KOG2103|consen 451 RKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQ 483 (910)
T ss_pred eeEEEEEecCceEEEEEcCCCeEEEEEecCccc
Confidence 5689999999999999 5577999999998876
No 51
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.17 E-value=1.9e+02 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.1
Q ss_pred cCCCCeEEccCCCCceeEEEecCCCeEEEEeccc
Q 005433 47 RLPPPIVADLNGDGRKEVLVATHDAKIQVLEPHA 80 (697)
Q Consensus 47 ~lp~Piv~DldGDG~~evivaT~d~kl~v~~p~~ 80 (697)
.|+-|++. |..+|.- +++.|.+|.+.+++-..
T Consensus 10 ~Lgs~~~~-l~~~~~~-Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 10 VLGSPVSF-LECNGSY-LLAITSSGLLYVWNLKK 41 (219)
T ss_pred ecCCceEE-EEeCCCE-EEEEeCCCeEEEEECCC
Confidence 35556555 8888888 99999999999999433
No 52
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.07 E-value=45 Score=42.19 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=21.7
Q ss_pred cEEeecCCCCcccEEEec---------CCe-EEEEEEeec
Q 005433 628 LVCEDFSNDGLTDVILMT---------SNG-VYGFVQTRQ 657 (697)
Q Consensus 628 ~iv~DfngDG~nDiIVvT---------~~G-iygfv~~~~ 657 (697)
+-+.|+|+||.+||||-- ..| ||-|.+...
T Consensus 327 l~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~ 366 (1030)
T KOG3637|consen 327 LAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGL 366 (1030)
T ss_pred EEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCC
Confidence 456899999999977642 134 888876653
No 53
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=23.71 E-value=2.8e+02 Score=28.98 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.8
Q ss_pred ccceEEEeecceEEEEcCCCCEEEEE
Q 005433 593 NQQMILAGGDQEAVVISPGGSILTSI 618 (697)
Q Consensus 593 ~~~~IlA~Ge~~~~ils~~G~vl~s~ 618 (697)
.+|+|+. ++|.|.+|.++|.-
T Consensus 83 ~d~~Vld-----AsIYd~~G~lLA~S 103 (210)
T PF10144_consen 83 KDPFVLD-----ASIYDADGVLLAQS 103 (210)
T ss_pred cCCeEeE-----EEEECCCCCEEEEc
Confidence 4688885 78999999999986
No 54
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=22.31 E-value=72 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=24.6
Q ss_pred EEEEEEcCeEEEEEc-CCchhhhhccccccC
Q 005433 132 VLVVVTSGWSVMCFD-HNLNKLWEANLQEDF 161 (697)
Q Consensus 132 vIVVVt~dw~V~cf~-hnLk~lW~~~l~~~~ 161 (697)
.|++.+.+..|+++| .+.+.+|+.+.....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 456669999999996 678999999887643
No 55
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=20.02 E-value=83 Score=36.36 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=0.0
Q ss_pred eeeeeecccccC--------CCccccccCCCCeEEccCCCCceeEEE
Q 005433 28 FREAWFHLSEEY--------PIKFDADRLPPPIVADLNGDGRKEVLV 66 (697)
Q Consensus 28 ~~~aw~~~~d~~--------p~~~~~~~lp~Piv~DldGDG~~eviv 66 (697)
|-+.|..+.-.| |++-.-..+-.|++.|.||||..+++|
T Consensus 224 ~~eiW~~~~~nfs~~~~~~kp~pan~~~vGq~vfmDfd~dG~~dilv 270 (606)
T KOG4550|consen 224 QFEIWENLDGNFSVSTILEKPQPANMMVVGQSVFMDFDGDGHMDILV 270 (606)
T ss_pred eeehhhcCCCceEEEEEccCCCCCCceeecceEEEeecCCcceeeee
Done!