Query 005433
Match_columns 697
No_of_seqs 58 out of 60
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kb0_A Quinohemoprotein alcoho 96.6 0.59 2E-05 53.2 26.4 84 537-646 456-540 (677)
2 2zuy_A YESX protein; beta-prop 96.4 0.012 4E-07 67.1 10.8 25 48-72 182-206 (620)
3 2zux_A YESW protein; beta-prop 95.1 0.031 1.1E-06 63.4 7.5 95 49-159 179-314 (591)
4 3q7m_A Lipoprotein YFGL, BAMB; 94.4 0.2 6.7E-06 51.0 10.8 95 529-653 278-375 (376)
5 2be1_A Serine/threonine-protei 91.1 0.38 1.3E-05 51.1 7.5 125 63-257 12-140 (339)
6 3q7m_A Lipoprotein YFGL, BAMB; 90.9 3.1 0.0001 42.1 13.7 104 529-653 53-159 (376)
7 2zux_A YESW protein; beta-prop 90.9 1.1 3.6E-05 51.2 11.1 62 588-649 122-202 (591)
8 1w6s_A Methanol dehydrogenase 89.3 0.36 1.2E-05 54.7 5.7 72 536-631 451-523 (599)
9 2zuy_A YESX protein; beta-prop 88.1 1.7 6E-05 49.7 10.2 61 589-649 127-206 (620)
10 1w6s_A Methanol dehydrogenase 87.8 5.1 0.00017 45.3 13.8 92 529-631 62-165 (599)
11 3no2_A Uncharacterized protein 87.7 0.5 1.7E-05 47.3 5.0 73 129-259 135-207 (276)
12 2ad6_A Methanol dehydrogenase 86.9 0.71 2.4E-05 51.5 6.1 88 536-651 442-530 (571)
13 1kv9_A Type II quinohemoprotei 84.7 0.96 3.3E-05 51.3 5.9 71 537-631 437-508 (668)
14 2hz6_A Endoplasmic reticulum t 83.0 0.7 2.4E-05 48.0 3.6 29 129-157 8-37 (369)
15 3hxj_A Pyrrolo-quinoline quino 82.9 14 0.00047 35.8 12.7 113 529-652 108-240 (330)
16 2bwr_A Psathyrella velutina le 82.5 5.7 0.00019 42.0 10.4 69 585-654 175-255 (401)
17 1yiq_A Quinohemoprotein alcoho 82.5 1.6 5.6E-05 49.7 6.6 71 537-631 454-525 (689)
18 2ad6_A Methanol dehydrogenase 82.5 11 0.00039 41.8 13.3 89 529-631 62-159 (571)
19 1flg_A Protein (quinoprotein e 80.6 1.5 5.2E-05 49.1 5.4 73 536-632 464-537 (582)
20 2hz6_A Endoplasmic reticulum t 78.8 3.2 0.00011 43.0 6.8 19 239-257 141-159 (369)
21 1kb0_A Quinohemoprotein alcoho 77.7 16 0.00056 41.4 12.8 89 529-631 77-173 (677)
22 1flg_A Protein (quinoprotein e 77.6 29 0.00098 38.8 14.5 101 529-645 68-175 (582)
23 3hxj_A Pyrrolo-quinoline quino 76.2 42 0.0014 32.3 13.6 95 529-653 226-320 (330)
24 3v4v_A Integrin alpha-4; cell 76.0 3.5 0.00012 46.9 6.6 79 577-655 271-373 (597)
25 2bwr_A Psathyrella velutina le 74.4 6.8 0.00023 41.4 8.0 74 581-655 6-88 (401)
26 3k6s_A Integrin alpha-X; cell 73.2 5.4 0.00018 48.5 7.6 79 577-656 437-541 (1095)
27 4a7k_A Aldos-2-ulose dehydrata 70.9 9.9 0.00034 45.1 8.7 26 52-77 98-134 (900)
28 3ije_A Integrin alpha-V; integ 65.9 11 0.00036 45.4 7.9 67 577-644 220-296 (967)
29 2be1_A Serine/threonine-protei 64.4 4.1 0.00014 43.2 3.6 29 130-158 10-39 (339)
30 1kv9_A Type II quinohemoprotei 64.4 61 0.0021 36.6 13.4 87 531-631 69-161 (668)
31 3v4v_A Integrin alpha-4; cell 63.8 21 0.00071 40.6 9.4 79 577-655 216-312 (597)
32 3ije_A Integrin alpha-V; integ 63.3 29 0.00098 41.7 10.9 75 581-656 278-380 (967)
33 3od9_A Putative exported prote 59.3 4.2 0.00014 38.0 2.2 23 48-70 61-83 (135)
34 1yiq_A Quinohemoprotein alcoho 55.9 90 0.0031 35.4 12.9 79 529-621 70-150 (689)
35 3hx6_A Type 4 fimbrial biogene 55.8 35 0.0012 38.8 9.4 94 553-657 178-285 (570)
36 3no2_A Uncharacterized protein 54.4 1.7E+02 0.0057 28.8 19.5 63 531-619 139-203 (276)
37 3vi3_A Integrin alpha-5; beta 49.2 30 0.001 39.7 7.6 66 578-645 230-306 (632)
38 3e5z_A Putative gluconolactona 48.3 43 0.0015 32.2 7.6 55 595-654 230-284 (296)
39 3k6s_A Integrin alpha-X; cell 47.0 75 0.0026 38.7 10.9 77 577-653 500-595 (1095)
40 3fcs_A Integrin, alpha 2B; bet 43.3 37 0.0013 40.8 7.4 68 577-645 233-310 (959)
41 3odt_A Protein DOA1; ubiquitin 42.7 2.1E+02 0.0073 26.6 12.4 63 585-654 230-294 (313)
42 4a7k_A Aldos-2-ulose dehydrata 42.6 83 0.0028 37.6 9.9 65 582-647 338-415 (900)
43 3t3p_A Integrin alpha-IIB; int 38.3 20 0.00068 39.6 3.7 25 53-77 424-449 (457)
44 3vi3_A Integrin alpha-5; beta 29.8 31 0.0011 39.5 3.7 26 52-77 357-388 (632)
45 3kci_A Probable E3 ubiquitin-p 29.4 1.4E+02 0.0047 31.1 8.3 104 529-652 63-183 (389)
46 3t3p_A Integrin alpha-IIB; int 28.7 27 0.00093 38.5 2.8 23 630-652 424-448 (457)
47 3dr2_A Exported gluconolactona 28.6 1.2E+02 0.0043 29.4 7.4 52 597-653 252-303 (305)
48 3fcs_A Integrin, alpha 2B; bet 26.6 38 0.0013 40.7 3.7 26 52-77 423-449 (959)
49 1suu_A DNA gyrase subunit A; t 22.9 1.3E+02 0.0046 30.8 6.6 17 528-544 58-74 (312)
50 3uc1_A DNA gyrase subunit A; D 21.9 3.3E+02 0.011 28.2 9.5 103 528-652 53-172 (327)
51 4dh2_B Dockerin type 1; cellul 21.0 22 0.00074 30.5 0.1 17 423-439 4-20 (82)
52 3qqz_A Putative uncharacterize 20.8 3.1E+02 0.01 27.5 8.7 71 584-659 176-254 (255)
53 3no0_A DNA gyrase subunit A; D 20.8 3.5E+02 0.012 27.2 9.2 50 602-652 80-142 (276)
54 1zvt_A Topoisomerase IV subuni 20.2 2E+02 0.0068 28.8 7.1 99 528-650 44-156 (256)
No 1
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.57 E-value=0.59 Score=53.19 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=56.9
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCEE
Q 005433 537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSIL 615 (697)
Q Consensus 537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~vl 615 (697)
.|.|+++|+. .++.+|+...+..+.. | .+. ..+ .-++++..+..+.++| .+|+++
T Consensus 456 ~g~l~A~D~~----tG~~~W~~~~~~~~~~-----g---------~~~-----~~g-~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 456 FGRLLAWDPV----AQKAAWSVEHVSPWNG-----G---------TLT-----TAG-NVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEEETT----TTEEEEEEEESSSCCC-----C---------EEE-----ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEEEeCC----CCcEEeecCCCCCCcC-----c---------ceE-----eCC-CEEEEECCCCcEEEEECCCCcee
Confidence 3999999975 2389999887643211 0 011 111 1233445567888999 599999
Q ss_pred EEEeCCCCCCcccEEeecCCCCcccEEEecC
Q 005433 616 TSIDLPAPPTHALVCEDFSNDGLTDVILMTS 646 (697)
Q Consensus 616 ~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~ 646 (697)
-++.+|+...+.|+.- .-||...+++.+-
T Consensus 512 w~~~~~~~~~~~p~~y--~~~G~~~v~~~~G 540 (677)
T 1kb0_A 512 WEAPTGTGVVAAPSTY--MVDGRQYVSVAVG 540 (677)
T ss_dssp EEEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred eeeeCCCCcccCCEEE--EeCCEEEEEEecc
Confidence 9999999888888875 5677777766544
No 2
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=96.40 E-value=0.012 Score=67.09 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.2
Q ss_pred CCCCeEEccCCCCceeEEEecCCCe
Q 005433 48 LPPPIVADLNGDGRKEVLVATHDAK 72 (697)
Q Consensus 48 lp~Piv~DldGDG~~evivaT~d~k 72 (697)
...|.|.|+||||+.||++.|.++.
T Consensus 182 yt~~~V~DlDGDGkaEIvv~TadGt 206 (620)
T 2zuy_A 182 YTQFMVYDLDGDGKAEIAMKTADGT 206 (620)
T ss_dssp SCCCEEECSSSSSSCEEEEEECTTC
T ss_pred cCceeEEEcCCCCcceEEEEccCCc
Confidence 3589999999999999999998764
No 3
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=95.14 E-value=0.031 Score=63.44 Aligned_cols=95 Identities=22% Similarity=0.429 Sum_probs=57.0
Q ss_pred CCCeEEccCCCCceeEEEecCCCe----------------------------EEEEecccCCccccccccccceeecccc
Q 005433 49 PPPIVADLNGDGRKEVLVATHDAK----------------------------IQVLEPHARRVDEGFSEARVLAEVSLLP 100 (697)
Q Consensus 49 p~Piv~DldGDG~~evivaT~d~k----------------------------l~v~~p~~~~~~~~f~~~~~~~e~Sll~ 100 (697)
..|.|.|+||||+.||++.|.++. |.||+-..+ ..+..+-+.|
T Consensus 179 t~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG---------~~l~~~~~~p 249 (591)
T 2zux_A 179 TQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG---------KELVTANFEP 249 (591)
T ss_dssp CCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTC---------CEEEEEECSS
T ss_pred CceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCC---------CEEecccCCC
Confidence 579999999999999999999875 555552221 0112222223
Q ss_pred cccccc-----cCCce--eEEeecccccccccCCCceEEEEEEE---cCeEEEEEc---CCchhhhhccccc
Q 005433 101 DKIRIA-----SGRRA--VAMATGVIDRTYRQGQPLKQVLVVVT---SGWSVMCFD---HNLNKLWEANLQE 159 (697)
Q Consensus 101 ~~~~~~-----~grrp--VAlaaGy~~p~~~~~~~~~qvIVVVt---~dw~V~cf~---hnLk~lW~~~l~~ 159 (697)
.+-.+. -|.|. -.++++|++- .+..||+.- ..+.|.+|| .+|+++|+.+...
T Consensus 250 ~rg~~~~WGD~ygnR~drf~~~vayLDG-------~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~ 314 (591)
T 2zux_A 250 ARGNVSDWGDSYGNRVDRFLAGIAYLDG-------QRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSK 314 (591)
T ss_dssp CCCCGGGGTCSSSSGGGCEEEEEECTTS-------SSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCcccccccccccccccceeeEEECCC-------CCceEEEeccccceeEEEEEECCCCceEEEEEecCCC
Confidence 221111 01111 1345577775 245555554 345788886 7899999887753
No 4
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=94.44 E-value=0.2 Score=50.96 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=58.3
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
+.+++.+.+|.|.|+++. +++.+|+....... ...-|.+. ...++++..+-.+.++
T Consensus 278 ~~l~~~~~~g~l~~~d~~----tG~~~w~~~~~~~~------------~~~~~~~~--------~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTID----GGVTLWTQSDLLHR------------LLTSPVLY--------NGNLVVGDSEGYLHWI 333 (376)
T ss_dssp TEEEEEETTCCEEEEETT----TCCEEEEECTTTTS------------CCCCCEEE--------TTEEEEECTTSEEEEE
T ss_pred CEEEEEcCCCeEEEEECC----CCcEEEeecccCCC------------cccCCEEE--------CCEEEEEeCCCeEEEE
Confidence 345666678899999974 33788986521110 00112111 1234444444568899
Q ss_pred cC-CCCEEEEEeCC-CCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 609 SP-GGSILTSIDLP-APPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 609 s~-~G~vl~s~~Lp-~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
|+ +|+++...+++ .+..+.|++.| +.|+|.|.+| +|.|-
T Consensus 334 d~~tG~~~~~~~~~~~~~~~~~~~~~------~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 334 NVEDGRFVAQQKVDSSGFQTEPVAAD------GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTTCCEEEEEECCTTCBCSCCEEET------TEEEEEBTTSCEEEEE
T ss_pred ECCCCcEEEEEecCCCcceeCCEEEC------CEEEEEeCCCEEEEEe
Confidence 94 99999999994 45555566542 3688888886 88873
No 5
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.38 Score=51.05 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=66.7
Q ss_pred eEEEecCCCeEEEEecccCCccccccccccceeec-ccccccccccCCceeEEeecccccccccCCCceEEEEEE-EcCe
Q 005433 63 EVLVATHDAKIQVLEPHARRVDEGFSEARVLAEVS-LLPDKIRIASGRRAVAMATGVIDRTYRQGQPLKQVLVVV-TSGW 140 (697)
Q Consensus 63 evivaT~d~kl~v~~p~~~~~~~~f~~~~~~~e~S-ll~~~~~~~~grrpVAlaaGy~~p~~~~~~~~~qvIVVV-t~dw 140 (697)
-|+++|.|++|--++...+ +.-+. .+.+ +- .++....+-. .....++||- +.|+
T Consensus 12 ~V~v~t~dG~l~Ald~~tG--~~~W~-----~~~~~~~----------p~~~~~~~~~-------~~~~~~~vv~p~~dG 67 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNG--HIIWS-----IEPENFQ----------PLIEIQEPSR-------LETYETLIIEPFGDG 67 (339)
T ss_dssp EEEEEETTSCEEEEETTTT--EEEEE-----ECGGGSC----------CSEECCCSCT-------TTSSEEEEECCSTTT
T ss_pred EEEEEeCCCeEEEEECCCC--cEEEE-----ecCCccC----------CcEEecCCcc-------ccCCcEEEEEECCCC
Confidence 4789999999999996554 22222 1111 10 1221111100 0123344443 7999
Q ss_pred EEEEEc-CCchhhhhccccccCCCCCcceeEEEEE-eeceeccCCceEEEEeeeecccCCCCCChhhhhhhhhhhhhhhh
Q 005433 141 SVMCFD-HNLNKLWEANLQEDFPPNAHHREIAISI-SNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIGLAEKNAEQHR 218 (697)
Q Consensus 141 ~V~cf~-hnLk~lW~~~l~~~~p~~~~~~EvsisI-s~~~i~~~D~G~VIVGgr~e~~~~~~~d~f~e~~~~~~~~e~hr 218 (697)
+|++|| .+....|...+..-....+.....+..| -+.+ ..+.|.|++|..-
T Consensus 68 ~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~--~~~~g~Vy~Gs~~------------------------- 120 (339)
T 2be1_A 68 NIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGK--IVEDEKVYTGSMR------------------------- 120 (339)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHTTCSEEEECC------------CCEEEEECEEE-------------------------
T ss_pred EEEEEECCCCcEEeeeccccceeccccccCCCceeecccc--cccCCEEEEEecC-------------------------
Confidence 999997 5566678776664332111110000011 0000 0156788888544
Q ss_pred cchhhhhhcccCCCcccceeEEeeecCCccceeccccCC
Q 005433 219 RSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNE 257 (697)
Q Consensus 219 ~~~~~k~~~~~~g~~~~~HfsyyAf~g~tG~~RW~h~~~ 257 (697)
| ..||+|.+||+++|+...+
T Consensus 121 ------------g-------~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 121 ------------T-------IMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp ------------E-------EEEEEETTTCCEEEEESTT
T ss_pred ------------C-------EEEEEECCCCcEEEEEecC
Confidence 1 4789999999999999866
No 6
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=90.90 E-value=3.1 Score=42.09 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=62.6
Q ss_pred ccEEEEe-cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005433 529 GDVVFLT-NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 607 (697)
Q Consensus 529 ~D~vFL~-s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 607 (697)
.+.||+. .+|.|.||+.. +++.+|+...+..-... . .....+..+.. .. ...++++..+..+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~----tG~~~W~~~~~~~~~~~----~-~~~~~~~~~~~----~~--~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNAD----DGKEIWSVSLAEKDGWF----S-KEPALLSGGVT----VS--GGHVYIGSEKAQVYA 117 (376)
T ss_dssp TTEEEEECTTSEEEEEETT----TCCEEEEEECCC---CC----S-CCCCCEEEEEE----EE--TTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEEcc----CCceeeeecCccccccc----c-ccCcccccCce----Ee--CCEEEEEcCCCEEEE
Confidence 3445554 57899999974 23899998765422100 0 00011111111 11 234455555667899
Q ss_pred EcC-CCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEE
Q 005433 608 ISP-GGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFV 653 (697)
Q Consensus 608 ls~-~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv 653 (697)
+|. +|+++-+.+++....+.|++.| | -|+|.|.+| +|+|-
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~~----~--~v~v~~~~g~l~~~d 159 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVSD----G--LVLIHTSNGQLQALN 159 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEET----T--EEEEECTTSEEEEEE
T ss_pred EECCCCCEEEEEeCCCceEcCCEEEC----C--EEEEEcCCCeEEEEE
Confidence 995 8999999999988877777652 2 466667776 87773
No 7
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=90.87 E-value=1.1 Score=51.18 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=49.3
Q ss_pred cccCCccceEEEe--------------ecceEEEEcCCCCEEEEEeCCCC-C----CcccEEeecCCCCcccEEEecCCe
Q 005433 588 LRVHDNQQMILAG--------------GDQEAVVISPGGSILTSIDLPAP-P----THALVCEDFSNDGLTDVILMTSNG 648 (697)
Q Consensus 588 lr~~~~~~~IlA~--------------Ge~~~~ils~~G~vl~s~~Lp~p-P----~ap~iv~DfngDG~nDiIVvT~~G 648 (697)
|.-++..++||+. |...+.+.+.+|++|-.+.|+.- . -.+++|.||||||..+|++.|.+|
T Consensus 122 LDGDG~~EiVv~~dp~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadG 201 (591)
T 2zux_A 122 VDGDGQYELILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADG 201 (591)
T ss_dssp SSSSSSCEEEEEEEETTCCCTTCCSCCCCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTT
T ss_pred cCCCCCEEEEEEECCcccccccccCcCCCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCC
Confidence 3455677888875 34567788899999999999642 1 347999999999999999999988
Q ss_pred E
Q 005433 649 V 649 (697)
Q Consensus 649 i 649 (697)
.
T Consensus 202 t 202 (591)
T 2zux_A 202 T 202 (591)
T ss_dssp C
T ss_pred c
Confidence 5
No 8
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=89.27 E-value=0.36 Score=54.68 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=47.2
Q ss_pred cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCE
Q 005433 536 NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSI 614 (697)
Q Consensus 536 s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~v 614 (697)
..|.|+++|+. .++.+|+...+..+.. | .|. ..+ .-+.++..+..+..+| .+|++
T Consensus 451 ~~G~l~A~D~~----tG~~~W~~~~~~~~~~-----g---------~~~-----tag-g~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 451 GLGQIKAYNAI----TGDYKWEKMERFAVWG-----G---------TMA-----TAG-DLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CCEEEEEECTT----TCCEEEEEEESSCCCS-----B---------CEE-----ETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CcCeEEEEECC----CCCEEeEecCCCCccC-----c---------ceE-----ecC-CEEEEECCCCeEEEEECCCCCE
Confidence 35999999985 3389999876532211 1 000 001 1122355566788889 59999
Q ss_pred EEEEeCCCCCCcccEEe
Q 005433 615 LTSIDLPAPPTHALVCE 631 (697)
Q Consensus 615 l~s~~Lp~pP~ap~iv~ 631 (697)
|-+++||+...+.|++-
T Consensus 507 lW~~~l~~g~~~~P~~y 523 (599)
T 1w6s_A 507 LWKFKIPSGAIGYPMTY 523 (599)
T ss_dssp EEEEECSSCCCSCCEEE
T ss_pred EEEeeCCCCcEeccEEE
Confidence 99999999888888654
No 9
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=88.09 E-value=1.7 Score=49.66 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=47.8
Q ss_pred ccCCccceEEEe--------------ecceEEEEcCCCCEEEEEeCCCCC-----CcccEEeecCCCCcccEEEecCCeE
Q 005433 589 RVHDNQQMILAG--------------GDQEAVVISPGGSILTSIDLPAPP-----THALVCEDFSNDGLTDVILMTSNGV 649 (697)
Q Consensus 589 r~~~~~~~IlA~--------------Ge~~~~ils~~G~vl~s~~Lp~pP-----~ap~iv~DfngDG~nDiIVvT~~Gi 649 (697)
.-++..++||+. |...+.+.+.+|++|-.+.|+.-. -.+++|.||||||..+|++.|.+|-
T Consensus 127 DGDG~~EIVv~~d~~n~~d~s~~g~tg~~~l~aY~ldG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt 206 (620)
T 2zuy_A 127 DGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGT 206 (620)
T ss_dssp SSSSSCEEEEEEEETTCCCTTSCCCCCCCEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred CCCCCeEEEEEECCCccccccccccCCCcEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence 345566777775 335677888899999999985422 2488999999999999999999874
No 10
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.82 E-value=5.1 Score=45.33 Aligned_cols=92 Identities=8% Similarity=0.032 Sum_probs=54.6
Q ss_pred ccEEEEec--CceEEEecC-CCCCCcceeeeeeccccccccCCCCC-CCCccceeeeeeEEeecccCCc--cceEEEeec
Q 005433 529 GDVVFLTN--RGEVTAYSP-GLHGHDAIWQWQLLTDATWSNLPSPS-GMTEASTVVPTLKAFSLRVHDN--QQMILAGGD 602 (697)
Q Consensus 529 ~D~vFL~s--~G~VTs~~~-~~~g~~~~~~Wq~~T~a~W~~~~~~~-g~~e~~~~~PsL~af~lr~~~~--~~~IlA~Ge 602 (697)
++.||+.+ +|.|.|++. . +|+.+|+.+........+... +.... -|.+. | ..+. ..+++++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~----tG~~lW~~~~~~~~~~~~~~~~~~~~~---g~av~--p--~~g~~~~rV~v~t~d 130 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDD----PGTILWQDKPKQNPAARAVACCDLVNR---GLAYW--P--GDGKTPALILKTQLD 130 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTC----TTSEEEEECCCCCGGGGGGCSSCSCCC---CCEEE--C--CCSSSCCEEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEeCCC----CCcEEEEECCCCCcccccccccccccc---ceEEE--e--cCCcceeEEEEEcCC
Confidence 46677776 599999997 2 238999988765432110000 00000 01211 1 1111 125556667
Q ss_pred ceEEEEcC-CCCEEEEEeCCC-----CCCcccEEe
Q 005433 603 QEAVVISP-GGSILTSIDLPA-----PPTHALVCE 631 (697)
Q Consensus 603 ~~~~ils~-~G~vl~s~~Lp~-----pP~ap~iv~ 631 (697)
..+.-||. +|+++-+..++. ..+++|++.
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~ 165 (599)
T 1w6s_A 131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV 165 (599)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred CEEEEEECCCCCEEEeecCCCCCccceeecCCEEE
Confidence 78888995 999999999986 566777774
No 11
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=87.74 E-value=0.5 Score=47.29 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=51.1
Q ss_pred ceEEEEEEEcCeEEEEEcCCchhhhhccccccCCCCCcceeEEEEEeeceeccCCceEEEEeeeecccCCCCCChhhhhh
Q 005433 129 LKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPPNAHHREIAISISNYTLKHGDTGLVIVGGRMEMQPHTIMDPFEEIG 208 (697)
Q Consensus 129 ~~qvIVVVt~dw~V~cf~hnLk~lW~~~l~~~~p~~~~~~EvsisIs~~~i~~~D~G~VIVGgr~e~~~~~~~d~f~e~~ 208 (697)
..+.||+...+..|+|||.+.+.+|+..... .|. ++.+ -..|.++|++.-
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~-~~~-------~~~~-------~~~g~~~v~~~~--------------- 184 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPNGQLLNSVKLSG-TPF-------SSAF-------LDNGDCLVACGD--------------- 184 (276)
T ss_dssp TSCEEEEETTTTEEEEECTTSCEEEEEECSS-CCC-------EEEE-------CTTSCEEEECBT---------------
T ss_pred CCCEEEEecCCCEEEEECCCCCEEEEEECCC-Ccc-------ceeE-------cCCCCEEEEeCC---------------
Confidence 4567777778999999999999999988752 221 1111 245666665221
Q ss_pred hhhhhhhhhhcchhhhhhcccCCCcccceeEEeeecCCccceeccccCCCc
Q 005433 209 LAEKNAEQHRRSASEKEASENSGTVDLRHFAFYAFAGRSGLLRWSRKNENI 259 (697)
Q Consensus 209 ~~~~~~e~hr~~~~~k~~~~~~g~~~~~HfsyyAf~g~tG~~RW~h~~~df 259 (697)
.+ ..+|||..||+..|+....+.
T Consensus 185 ---------------------------~~-~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 185 ---------------------------AH-CFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp ---------------------------TS-EEEEECTTTCCEEEEEEGGGS
T ss_pred ---------------------------CC-eEEEEeCcCCcEEEEecCCCC
Confidence 12 268999999999999986543
No 12
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=86.88 E-value=0.71 Score=51.50 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=55.8
Q ss_pred cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCE
Q 005433 536 NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSI 614 (697)
Q Consensus 536 s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~v 614 (697)
..|.|.+++.. .++.+|+..++..+... | +...+ .-+.++..+..+..+| .+|++
T Consensus 442 ~~g~l~a~D~~----tG~~~W~~~~~~~~~~~-------------~------~~t~g-g~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 442 EMGQIRAFDLT----TGKAKWTKWEKFAAWGG-------------T------LYTKG-GLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCEEEEEECTT----TCCEEEEEEESSCCCSB-------------C------EEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CCCeEEEEECC----CCCEEEEecCCCCccce-------------e------EEECC-CEEEEEcCCCeEEEEECCCCCE
Confidence 46999999975 33789998775322110 0 00011 1233344567788899 59999
Q ss_pred EEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEE
Q 005433 615 LTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYG 651 (697)
Q Consensus 615 l~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giyg 651 (697)
+-+++++....+.|++ +.-||. +.|.+.+|..|
T Consensus 498 lw~~~~~~~~~~~p~~--~~~~G~--~yv~~~~G~~g 530 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMT--YSFKGK--QYIGSMYGVGG 530 (571)
T ss_dssp EEEEECSSCCCSCCEE--EEETTE--EEEEEEECCCT
T ss_pred EEEEeCCCCcEeeeEE--EEECCE--EEEEEECCCCC
Confidence 9999999988888876 223443 56666666544
No 13
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=84.74 E-value=0.96 Score=51.29 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=46.1
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC-CCCEE
Q 005433 537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP-GGSIL 615 (697)
Q Consensus 537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~-~G~vl 615 (697)
.|.|.++|+. .++.+|+...+..+... .+. ..+ .-+.++..+..+..+|. +|+++
T Consensus 437 ~g~l~A~D~~----tG~~~W~~~~~~~~~~~--------------~~~-----t~g-g~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPV----KQKAAWKVPYPTHWNGG--------------TLS-----TAG-NLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETT----TTEEEEEEEESSSCCCC--------------EEE-----ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCC----CCcEEEEccCCCCCcCc--------------eeE-----eCC-CEEEEECCcccchhhhhhcChhh
Confidence 3899999974 34899998875443211 000 001 11233445677888884 89999
Q ss_pred EEEeCCCCCCcccEEe
Q 005433 616 TSIDLPAPPTHALVCE 631 (697)
Q Consensus 616 ~s~~Lp~pP~ap~iv~ 631 (697)
.++++++...+.|+.-
T Consensus 493 ~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 493 WQFEAQSGIVAAPMTF 508 (668)
T ss_dssp EEEECSSCCCSCCEEE
T ss_pred eEecCCCCcccCceEE
Confidence 9999998888777764
No 14
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=83.03 E-value=0.7 Score=48.01 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=24.8
Q ss_pred ceEEEEEEEcCeEEEEEc-CCchhhhhccc
Q 005433 129 LKQVLVVVTSGWSVMCFD-HNLNKLWEANL 157 (697)
Q Consensus 129 ~~qvIVVVt~dw~V~cf~-hnLk~lW~~~l 157 (697)
....|++.+.|..|+|+| .+.+++|+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~ 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC
Confidence 345677889999999998 78999999887
No 15
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=82.95 E-value=14 Score=35.81 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCC--CCCC-----Cccc--eeeee---eEEeeccc------
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPS--PSGM-----TEAS--TVVPT---LKAFSLRV------ 590 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~--~~g~-----~e~~--~~~Ps---L~af~lr~------ 590 (697)
+.+++-+.+|.|.+|++.| ...|+...+......+. ..|. .... .+-|. +..+++..
T Consensus 108 ~~l~v~t~~~~l~~~d~~g-----~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTDG-----TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TEEEEECTTSEEEEECTTS-----CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCC
T ss_pred CEEEEEecCCEEEEEcCCC-----CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeee
Confidence 4466666689999999864 68998876543221111 1111 0000 00010 01111111
Q ss_pred -CCccceEEEeecceEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecC-CeEEEE
Q 005433 591 -HDNQQMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTS-NGVYGF 652 (697)
Q Consensus 591 -~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~-~Giygf 652 (697)
.+.+..|++.. ..+..+|++|+.+-...++...+..+.+ +.|| .|.+.|. +|++.|
T Consensus 183 ~~d~~g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~---~~~g--~l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 183 SIGKDGTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAI---SEDG--TIYVTSLDGHLYAI 240 (330)
T ss_dssp EECTTCCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEE---CTTS--CEEEEETTTEEEEE
T ss_pred EEcCCCEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEE---CCCC--eEEEEcCCCeEEEE
Confidence 01223333333 6777888888888877776654444443 2343 5777776 478887
No 16
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=82.53 E-value=5.7 Score=42.00 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=41.9
Q ss_pred EeecccCCccceEEEeecceEEEEc--CCCCEEEEEeCC-CC---------CCcccEEeecCCCCcccEEEecCCeEEEE
Q 005433 585 AFSLRVHDNQQMILAGGDQEAVVIS--PGGSILTSIDLP-AP---------PTHALVCEDFSNDGLTDVILMTSNGVYGF 652 (697)
Q Consensus 585 af~lr~~~~~~~IlA~Ge~~~~ils--~~G~vl~s~~Lp-~p---------P~ap~iv~DfngDG~nDiIVvT~~Giygf 652 (697)
+.-+...+..+++++ +...+.+.- .+|.......++ .. ...++.+.||||||..||++...++++-|
T Consensus 175 ~~D~dgDG~~Dl~~~-~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~~~~~~~ 253 (401)
T 2bwr_A 175 LADVTGDGLLDVVGF-GENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGVAGVYTS 253 (401)
T ss_dssp EECSSSSSCCEEEEE-CSSCEEEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEECSSSEEEE
T ss_pred EEEcCCCCCccEEEE-CCCcEEEEEeCCCCceecceeeccccccCcCCcccCCcceeeeEcCCCCCccEEEECCCcEEEE
Confidence 334445556666654 445555553 245432222221 11 14567999999999999999887788777
Q ss_pred EE
Q 005433 653 VQ 654 (697)
Q Consensus 653 v~ 654 (697)
..
T Consensus 254 ~n 255 (401)
T 2bwr_A 254 LN 255 (401)
T ss_dssp CB
T ss_pred Ee
Confidence 54
No 17
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=82.46 E-value=1.6 Score=49.67 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=47.5
Q ss_pred CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCEE
Q 005433 537 RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSIL 615 (697)
Q Consensus 537 ~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~vl 615 (697)
+|.|+++|+.- ++.+|+...+..|... .|. ..+ .-+.+++.+..+..+| .+|++|
T Consensus 454 ~g~l~A~D~~t----G~~~W~~~~~~~~~~g--------------~~~-----tag-glvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVK----QQAAWEVPYVTIFNGG--------------TLS-----TAG-NLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTT----TEEEEEEEESSSCCCC--------------EEE-----ETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCC----CCeEeEccCCCCccCc--------------cce-----ECC-CEEEEECCCCcEEEEECCCCccc
Confidence 48999999852 3899998876544211 111 011 1222345567788889 599999
Q ss_pred EEEeCCCCCCcccEEe
Q 005433 616 TSIDLPAPPTHALVCE 631 (697)
Q Consensus 616 ~s~~Lp~pP~ap~iv~ 631 (697)
-++++|+...+.|+.-
T Consensus 510 w~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTY 525 (689)
T ss_dssp EEEECSSCCCSCCEEE
T ss_pred eeeeCCCCcccCceEE
Confidence 9999999888777654
No 18
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=82.46 E-value=11 Score=41.78 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred ccEEEEecC--ceEEEecC-CCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceE
Q 005433 529 GDVVFLTNR--GEVTAYSP-GLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEA 605 (697)
Q Consensus 529 ~D~vFL~s~--G~VTs~~~-~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~ 605 (697)
.+.||+.+. |.|.|++. . +|+.+|+...+......+.... +.+-.++.. ....++++..+..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~----tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~v~v~~~dg~l 127 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLND----PGKIVWQHKPKQDASTKAVMCC----DVVDRGLAY------GAGQIVKKQANGHL 127 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTC----TTSEEEEECCCCCGGGGGGCTT----CSCCCCCEE------ETTEEEEECTTSEE
T ss_pred CCEEEEEeCCCCEEEEEeCCC----CccEEEEEcCCCCccccccccc----cccccccEE------ECCEEEEEeCCCEE
Confidence 456777664 99999997 2 2389999876643211100000 000011110 12245555567789
Q ss_pred EEEcC-CCCEEEEEeCCC-----CCCcccEEe
Q 005433 606 VVISP-GGSILTSIDLPA-----PPTHALVCE 631 (697)
Q Consensus 606 ~ils~-~G~vl~s~~Lp~-----pP~ap~iv~ 631 (697)
..||. +|+++-+.+++. ...++|++.
T Consensus 128 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~ 159 (571)
T 2ad6_A 128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVA 159 (571)
T ss_dssp EEEETTTCCEEEEEECCCGGGTCBCCSCCEEE
T ss_pred EEEECCCCCEEEEecCCCCCccceeccCCEEE
Confidence 99995 999999999986 445666664
No 19
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=80.63 E-value=1.5 Score=49.07 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=48.2
Q ss_pred cCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEc-CCCCE
Q 005433 536 NRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVIS-PGGSI 614 (697)
Q Consensus 536 s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~~G~v 614 (697)
..|.|+++++. .++.+|+...+..+.. | .+. ..+ .-+.++..+..+..+| .+|++
T Consensus 464 ~~G~l~A~D~~----tG~~~W~~~~~~~~~~-----g---------~~~-----tag-glvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 464 HVGSLRAMDPV----SGKVVWEHKEHLPLWA-----G---------VLA-----TAG-NLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CSEEEEEECTT----TCCEEEEEEESSCCCS-----C---------CEE-----ETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CcceEEEEECC----CCCEEEEecCCCCCcc-----c---------ceE-----eCC-CEEEEECCCCcEEEEECCCCCE
Confidence 36999999975 2379999877542211 0 000 001 1123355566788889 59999
Q ss_pred EEEEeCCCCCCcccEEee
Q 005433 615 LTSIDLPAPPTHALVCED 632 (697)
Q Consensus 615 l~s~~Lp~pP~ap~iv~D 632 (697)
|-++++|+...++|+.-.
T Consensus 520 lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 520 LWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp EEEEECSSCCCSCCEEEE
T ss_pred EEEecCCCCcccCceEEE
Confidence 999999999988887643
No 20
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=78.78 E-value=3.2 Score=43.03 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=16.2
Q ss_pred EEeeecCCccceeccccCC
Q 005433 239 AFYAFAGRSGLLRWSRKNE 257 (697)
Q Consensus 239 syyAf~g~tG~~RW~h~~~ 257 (697)
..+|+|.+||+++|+.+..
T Consensus 141 ~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 141 TITMYDTKTRELRWNATYF 159 (369)
T ss_dssp EEECCCSSSSSCCCEEEEE
T ss_pred EEEEEECCCCCEEEeEecc
Confidence 5789999999999997643
No 21
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=77.73 E-value=16 Score=41.35 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=52.8
Q ss_pred ccEEEEec-CceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005433 529 GDVVFLTN-RGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 607 (697)
Q Consensus 529 ~D~vFL~s-~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 607 (697)
++.||+.+ +|.|.|++.. .|+.+|+......-...+... . +.+..++.. ....++++..+..+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~~---~-~~~~~~~a~------~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTR----TGNRIWTYDPQIDRSTGFKGC---C-DVVNRGVAL------WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp TTEEEEECGGGCEEEEETT----TTEEEEEECCCCCGGGGGGSS---S-CSCCCCCEE------ETTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECC----CCcEEEEEcCCCCcccccccc---c-cCCCCCceE------ECCEEEEEcCCCEEEE
Confidence 45566554 5999999964 348999988764322110000 0 001111111 1234555566778999
Q ss_pred EcC-CCCEEEEEeCC------CCCCcccEEe
Q 005433 608 ISP-GGSILTSIDLP------APPTHALVCE 631 (697)
Q Consensus 608 ls~-~G~vl~s~~Lp------~pP~ap~iv~ 631 (697)
||. +|+++-++.++ ...+++|++.
T Consensus 143 lD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~ 173 (677)
T 1kb0_A 143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVF 173 (677)
T ss_dssp EETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred EECCCCCEEeeecCCcCcCcCcccccCcEEE
Confidence 995 99999999997 3455666654
No 22
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=77.59 E-value=29 Score=38.77 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=58.5
Q ss_pred ccEEEEecC-ceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005433 529 GDVVFLTNR-GEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 607 (697)
Q Consensus 529 ~D~vFL~s~-G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 607 (697)
.+.||+.+. +.|.|++.. .|+.+|+..+...-... + ..+.+-.++.. ....+++++.+..++-
T Consensus 68 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~--~----~~~~~~~g~a~------~~~~v~~~t~dg~l~A 131 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAK----TGKRLWTYNHRLPDDIR--P----CCDVVNRGAAI------YGDKVFFGTLDASVVA 131 (582)
T ss_dssp TTEEEEEETTTEEEEEESS----SCCEEEEEECCCCTTCC--C----SSCSCCCCCEE------ETTEEEEEETTTEEEE
T ss_pred CCEEEEEcCCCCEEEEECC----CCcEEEEEcCCCCcccc--c----ccccCCCccEE------ECCEEEEEeCCCEEEE
Confidence 456776665 679999973 34899998776432111 0 00000011110 1234556666778888
Q ss_pred EcC-CCCEEEEEeCCCC-----CCcccEEeecCCCCcccEEEec
Q 005433 608 ISP-GGSILTSIDLPAP-----PTHALVCEDFSNDGLTDVILMT 645 (697)
Q Consensus 608 ls~-~G~vl~s~~Lp~p-----P~ap~iv~DfngDG~nDiIVvT 645 (697)
||. +|+++-+..++.+ .+++|++.+=+.+|..-|++.+
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~ 175 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGS 175 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECC
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEec
Confidence 995 9999999998762 4555665543445554344444
No 23
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=76.19 E-value=42 Score=32.35 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=61.5
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
+.+.+-+.+|-|.++++.+ ...|+..++... ..++. ......+.+++.+..+..+
T Consensus 226 g~l~v~t~~~gl~~~~~~g-----~~~~~~~~~~~~---------------~~~~~-----~~~~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 226 GTIYVTSLDGHLYAINPDG-----TEKWRFKTGKRI---------------ESSPV-----IGNTDTIYFGSYDGHLYAI 280 (330)
T ss_dssp SCEEEEETTTEEEEECTTS-----CEEEEEECSSCC---------------CSCCE-----ECTTSCEEEECTTCEEEEE
T ss_pred CeEEEEcCCCeEEEECCCC-----CEeEEeeCCCCc---------------cccce-----EcCCCeEEEecCCCCEEEE
Confidence 3566667779999998765 677886543211 11111 1112344445544478999
Q ss_pred cCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 005433 609 SPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFV 653 (697)
Q Consensus 609 s~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giygfv 653 (697)
|++|+.+....++...+..+++ | .|| -|.|.|.+|+.-+.
T Consensus 281 d~~g~~~~~~~~~~~~~~~~~~-d--~~g--~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NPDGTEKWNFETGSWIIATPVI-D--ENG--TIYFGTRNGKFYAL 320 (330)
T ss_dssp CTTSCEEEEEECSSCCCSCCEE-C--TTC--CEEEECTTSCEEEE
T ss_pred CCCCcEEEEEEcCCccccceEE-c--CCC--EEEEEcCCCeEEEE
Confidence 9999999999998876666554 3 233 49999999966554
No 24
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=75.98 E-value=3.5 Score=46.89 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=44.5
Q ss_pred ceeeeeeEEeecccCCccceEEEee-------cceEEEE--cCCCCE--EEEEeCCCCCC-----ccc--EEeecCCCCc
Q 005433 577 STVVPTLKAFSLRVHDNQQMILAGG-------DQEAVVI--SPGGSI--LTSIDLPAPPT-----HAL--VCEDFSNDGL 638 (697)
Q Consensus 577 ~~~~PsL~af~lr~~~~~~~IlA~G-------e~~~~il--s~~G~v--l~s~~Lp~pP~-----ap~--iv~DfngDG~ 638 (697)
.+|-.++++.-+..++..++++..- +-.+.|+ +.+|.. .....|+..+. ..- .++|+|+||.
T Consensus 271 ~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gDlngDG~ 350 (597)
T 3v4v_A 271 SYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGF 350 (597)
T ss_dssp CCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCCSSCSSS
T ss_pred CCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccccCCCCC
Confidence 3444566666666667667655431 1223333 345642 22334554331 112 3689999999
Q ss_pred ccEEEecC------CeEEEEEEe
Q 005433 639 TDVILMTS------NGVYGFVQT 655 (697)
Q Consensus 639 nDiIVvT~------~Giygfv~~ 655 (697)
+||+|-.- ..+|.|...
T Consensus 351 ~Dl~VGap~~~~~~G~vyv~~g~ 373 (597)
T 3v4v_A 351 EDVAIGAPQEDDLQGAIYIYNGR 373 (597)
T ss_dssp CCEEEEETTHHHHTBEEEEECEE
T ss_pred cceEEecccccCCCCcEEEecCC
Confidence 99999763 347777544
No 25
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=74.42 E-value=6.8 Score=41.36 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=43.5
Q ss_pred eeeEEeecccCCccceEEEeecceEEEEc-C-CCCEEEEEeCCCCC-------CcccEEeecCCCCcccEEEecCCeEEE
Q 005433 581 PTLKAFSLRVHDNQQMILAGGDQEAVVIS-P-GGSILTSIDLPAPP-------THALVCEDFSNDGLTDVILMTSNGVYG 651 (697)
Q Consensus 581 PsL~af~lr~~~~~~~IlA~Ge~~~~ils-~-~G~vl~s~~Lp~pP-------~ap~iv~DfngDG~nDiIVvT~~Giyg 651 (697)
.+..++++...+...+| +.|...+.+.- . --.....+.--.+. ..++.+.||||||..||++...++++-
T Consensus 6 ~~~~~~d~d~DG~~Div-~~~~~~~~~~~n~~f~~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~~~~~~~ 84 (401)
T 2bwr_A 6 SQALPVPTRIPGVADLV-GFGNGGVYIIRNSLLIQVVKVINNFGYDAGGWRVEKHVRLLADTTGDNQSDVVGFGENGVWI 84 (401)
T ss_dssp ESSCCSCCCSSCCCEEE-EEETTEEEEECSSSSCCCEEEESCSBTTTBCCCTTTCEEEEECSSSSSCCEEEEECSSSEEE
T ss_pred ecccccccCCCCcccEE-EEcCCcEEEEccccccChhhhhcccccCCCccccCcceeeeeccCCCCchhEEEeCCCcEEE
Confidence 34444555566666654 56777655542 1 11111111101111 456899999999999999998888877
Q ss_pred EEEe
Q 005433 652 FVQT 655 (697)
Q Consensus 652 fv~~ 655 (697)
|...
T Consensus 85 ~~n~ 88 (401)
T 2bwr_A 85 STNN 88 (401)
T ss_dssp ECBC
T ss_pred EEeC
Confidence 7543
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=73.19 E-value=5.4 Score=48.50 Aligned_cols=79 Identities=23% Similarity=0.254 Sum_probs=46.1
Q ss_pred ceeeeeeEEeecccCCccceEEEeec---------ceEEEE--cCC-CCEEEEEeCCCCC--------CcccEEeecCCC
Q 005433 577 STVVPTLKAFSLRVHDNQQMILAGGD---------QEAVVI--SPG-GSILTSIDLPAPP--------THALVCEDFSND 636 (697)
Q Consensus 577 ~~~~PsL~af~lr~~~~~~~IlA~Ge---------~~~~il--s~~-G~vl~s~~Lp~pP--------~ap~iv~DfngD 636 (697)
.++=+++++.-+..++..++++ +|. -.+.|. +.+ |.......|...+ .+-.+++|+|||
T Consensus 437 s~fG~sva~~DvngDG~~Dllv-vGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgD 515 (1095)
T 3k6s_A 437 SYFGASLCSVDVDSDGSTDLVL-IGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGD 515 (1095)
T ss_dssp SCTTSCEEEECSSSSSSCCEEE-EECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSS
T ss_pred CcCCceEEEEEeCCCCCccEEE-ECCccccCcCCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCC
Confidence 4566788877777778777743 331 123343 233 2232223343332 222356899999
Q ss_pred CcccEEEec-----CCe-EEEEEEee
Q 005433 637 GLTDVILMT-----SNG-VYGFVQTR 656 (697)
Q Consensus 637 G~nDiIVvT-----~~G-iygfv~~~ 656 (697)
|.+||+|.. ..| +|.|....
T Consensus 516 G~~Dl~VGAP~~~~~~G~vyi~~g~~ 541 (1095)
T 3k6s_A 516 KLTDVVIGAPGEEENRGAVYLFHGVL 541 (1095)
T ss_dssp SCCEEEEECTTTTTSCCBEEEEEBCS
T ss_pred CCcCEEEeCCcCCCCCCEEEEecCCC
Confidence 999999865 223 88876544
No 27
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=70.88 E-value=9.9 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.4
Q ss_pred eEEccCCCCceeEEEecC-----------CCeEEEEe
Q 005433 52 IVADLNGDGRKEVLVATH-----------DAKIQVLE 77 (697)
Q Consensus 52 iv~DldGDG~~evivaT~-----------d~kl~v~~ 77 (697)
..+||||||++|||++.. +++|..|.
T Consensus 98 ~aaDLDGDGdlDVVvas~fg~t~dd~n~~gG~V~W~E 134 (900)
T 4a7k_A 98 HYADITKNGFNDVIITDQYGSSMDDIWAYGGRVSWLE 134 (900)
T ss_dssp EEECTTCSSBCEEEEEECCEEETTEECTTCCEEEEEC
T ss_pred EEEeeCCCCCccEEEecccCccccccccCCcEEEEEe
Confidence 679999999999999852 47899987
No 28
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=65.87 E-value=11 Score=45.38 Aligned_cols=67 Identities=7% Similarity=0.075 Sum_probs=37.8
Q ss_pred ceeeeeeEEeecccCCccceEEEe----ec-ceEEEEcCCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEe
Q 005433 577 STVVPTLKAFSLRVHDNQQMILAG----GD-QEAVVISPGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILM 644 (697)
Q Consensus 577 ~~~~PsL~af~lr~~~~~~~IlA~----Ge-~~~~ils~~G~vl~s~~Lp~pP~-----ap~iv~DfngDG~nDiIVv 644 (697)
.++=+++++--+..++...+++.. +. -.+.|...+| ......+..... ..+.++||||||..||+|.
T Consensus 220 sy~G~sVa~gD~ngDG~~DlvvGaP~~~~~~G~V~i~~~~~-~~~~~~~~g~~~gs~fG~sva~~D~ngDG~~DLvVg 296 (967)
T 3ije_A 220 SYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKN-MSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIG 296 (967)
T ss_dssp CCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEECSSS-SCEEEEEECSSTTSCTTSEEEEECTTSSSCCEEEEE
T ss_pred CccceEEEEEEECCCCCeEEEEEecccCCCCcEEEEEeCCC-ceeeeEecccccCCceeEEEEEEecCCCCCceEEEE
Confidence 345567776556566666655541 12 2344555444 222222322211 3456899999999999887
No 29
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=64.42 E-value=4.1 Score=43.20 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=26.1
Q ss_pred eEEEEEEEcCeEEEEEc-CCchhhhhcccc
Q 005433 130 KQVLVVVTSGWSVMCFD-HNLNKLWEANLQ 158 (697)
Q Consensus 130 ~qvIVVVt~dw~V~cf~-hnLk~lW~~~l~ 158 (697)
...++|.|.|.+|+++| .+.+++|+.+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 56789999999999998 689999999887
No 30
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=64.35 E-value=61 Score=36.56 Aligned_cols=87 Identities=10% Similarity=0.035 Sum_probs=49.7
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEEcC
Q 005433 531 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVISP 610 (697)
Q Consensus 531 ~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~ils~ 610 (697)
+++.+..|.|.|++.. +|+.+|+..+........... . +.+-.++.. ....+++.+.+..+.-+|.
T Consensus 69 vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~~---~-~~~~~~~~~------~~~~v~v~~~dg~l~alD~ 134 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAA----SGKELWRYDPEVAKVKARTSC---C-DAVNRGVAL------WGDKVYVGTLDGRLIALDA 134 (668)
T ss_dssp EEEEEGGGEEEEEETT----TCCEEEEECCCCCGGGGGGCT---T-CSCCCCCEE------EBTEEEEECTTSEEEEEET
T ss_pred EEEECCCCeEEEEECC----CChhceEECCCCCcccccccc---c-cCCccceEE------ECCEEEEEcCCCEEEEEEC
Confidence 4445567999999963 348999987764332110000 0 000011111 1224555566778899995
Q ss_pred -CCCEEEEEeCCC-----CCCcccEEe
Q 005433 611 -GGSILTSIDLPA-----PPTHALVCE 631 (697)
Q Consensus 611 -~G~vl~s~~Lp~-----pP~ap~iv~ 631 (697)
+|+++-+.++.. ..+++|++.
T Consensus 135 ~tG~~~W~~~~~~~~~~~~~~~~P~v~ 161 (668)
T 1kv9_A 135 KTGKAIWSQQTTDPAKPYSITGAPRVV 161 (668)
T ss_dssp TTCCEEEEEECSCTTSSCBCCSCCEEE
T ss_pred CCCCEeeeeccCCCCCcceecCCCEEE
Confidence 999999999853 234455553
No 31
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=63.81 E-value=21 Score=40.64 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=46.4
Q ss_pred ceeeeeeEEeecccCCccceEEEee----cceEEEEc-CCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec-
Q 005433 577 STVVPTLKAFSLRVHDNQQMILAGG----DQEAVVIS-PGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT- 645 (697)
Q Consensus 577 ~~~~PsL~af~lr~~~~~~~IlA~G----e~~~~ils-~~G~vl~s~~Lp~pP~-----ap~iv~DfngDG~nDiIVvT- 645 (697)
.++=.|+++--+..++...+|+..- .-.+.|+. .+|.......|..... ..+.++||||||.+||+|-.
T Consensus 216 sy~GySva~gD~ngDG~~DlvvGAP~~~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap 295 (597)
T 3v4v_A 216 SYLGYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAP 295 (597)
T ss_dssp CCBTSSEEEECSSCTTSCEEEEEETTGGGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEET
T ss_pred CcCccEEEEEEECCCCCeEEEEecccccCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEcc
Confidence 4455677665555555555444321 12355554 4566655556654322 24567899999999998763
Q ss_pred ------CCe-EEEEEEe
Q 005433 646 ------SNG-VYGFVQT 655 (697)
Q Consensus 646 ------~~G-iygfv~~ 655 (697)
..| +|-|...
T Consensus 296 ~~~~~~~~G~v~vy~~~ 312 (597)
T 3v4v_A 296 MQSTIREEGRVFVYINS 312 (597)
T ss_dssp TCCSSSCCCEEEEEEEC
T ss_pred cccCCCcCCeEEEEEEC
Confidence 234 7777543
No 32
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=63.34 E-value=29 Score=41.73 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=42.5
Q ss_pred eeeEEeecccCCccceEEEe-------------ecceEEEEc--CCCCEEEEEeCCCCCC----ccc--EEeecCCCCcc
Q 005433 581 PTLKAFSLRVHDNQQMILAG-------------GDQEAVVIS--PGGSILTSIDLPAPPT----HAL--VCEDFSNDGLT 639 (697)
Q Consensus 581 PsL~af~lr~~~~~~~IlA~-------------Ge~~~~ils--~~G~vl~s~~Lp~pP~----ap~--iv~DfngDG~n 639 (697)
-++++.-+..+|..+++++. ..-.+.|+- .+|... ...|+..+. .-. .++||||||.+
T Consensus 278 ~sva~~D~ngDG~~DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~g~f~-~~~l~g~~~~~~fG~sva~~gDlngDG~~ 356 (967)
T 3ije_A 278 FSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQ-TTKLNGFEVFARFGSAIAPLGDLDQDGFN 356 (967)
T ss_dssp SEEEEECTTSSSCCEEEEEETTCEEECTTSCEEECCEEEEEECCSSSCCE-EEEEECSSTTSCTTSEEEEEESTTCSSSC
T ss_pred EEEEEEecCCCCCceEEEEcccccccccccccccCCcEEEEEECCCCcee-eeeccCccccCCCcceEEeeeccCCCCCc
Confidence 35566666667777776652 112233332 344433 445544332 112 36899999999
Q ss_pred cEEEecC------C-eEEEEEEee
Q 005433 640 DVILMTS------N-GVYGFVQTR 656 (697)
Q Consensus 640 DiIVvT~------~-Giygfv~~~ 656 (697)
||+|..- . .+|.|.-..
T Consensus 357 Dl~VGap~~~~~~~G~vyiy~g~~ 380 (967)
T 3ije_A 357 DIAIAAPYGGEDKKGIVYIFNGRS 380 (967)
T ss_dssp EEEEEETTCSSSSCCEEEEEEEET
T ss_pred ceEEeccccCCCCCceEEEEecCC
Confidence 9999763 2 377776543
No 33
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=59.30 E-value=4.2 Score=38.04 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.9
Q ss_pred CCCCeEEccCCCCceeEEEecCC
Q 005433 48 LPPPIVADLNGDGRKEVLVATHD 70 (697)
Q Consensus 48 lp~Piv~DldGDG~~evivaT~d 70 (697)
+-+=-++||||||++||+|.|..
T Consensus 61 I~~a~laDlngd~~~eLiVt~~s 83 (135)
T 3od9_A 61 IKELKLLDLNGDKQPELIVVVES 83 (135)
T ss_dssp EEEEEEECSSSSSSCEEEEEEEC
T ss_pred EEEEEEEecCCCCCeeEEEEEEe
Confidence 33456899999999999998865
No 34
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=55.89 E-value=90 Score=35.37 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=45.5
Q ss_pred ccEEEE-ecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEE
Q 005433 529 GDVVFL-TNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVV 607 (697)
Q Consensus 529 ~D~vFL-~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~i 607 (697)
++.||+ +.+|.|.|++.. .|+.+|+............. .. +.+-.++.. ....+++++.+..+.-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~----tG~~~W~~~~~~~~~~~~~~---~~-~~~~~~~~~------~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDAR----DGRLIWKYDPQSDRHRAGEA---CC-DAVNRGVAV------WKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETT----TCCEEEEECCCCCGGGGGGC---TT-CSCCCCCEE------ETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECC----CCceeEEEcCCCCccccccc---cc-cCCCCccEE------ECCEEEEEccCCEEEE
Confidence 345555 457999999973 34899998765432111000 00 001111111 1124555556778889
Q ss_pred EcC-CCCEEEEEeCC
Q 005433 608 ISP-GGSILTSIDLP 621 (697)
Q Consensus 608 ls~-~G~vl~s~~Lp 621 (697)
+|. +|+++-+..+.
T Consensus 136 lDa~TG~~~W~~~~~ 150 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTR 150 (689)
T ss_dssp EETTTCCEEEEEECC
T ss_pred EECCCCCEeeeecCc
Confidence 995 99999999886
No 35
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=55.76 E-value=35 Score=38.83 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=62.6
Q ss_pred eeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEee------cceEEEEcC-CCCEEEEEeCCCCC-
Q 005433 553 IWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGG------DQEAVVISP-GGSILTSIDLPAPP- 624 (697)
Q Consensus 553 ~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~G------e~~~~ils~-~G~vl~s~~Lp~pP- 624 (697)
.++|.+.+. ....+ +. ..-.|.+..+. ++.--+|++.| ...+-|+|. +|.++..+.++...
T Consensus 178 ~~LWe~~~~-~~~~L------G~-t~s~P~I~~~~---~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~~~ 246 (570)
T 3hx6_A 178 KLLWEIGVD-QEPDL------GY-SFPKPTVARLH---NGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGRTG 246 (570)
T ss_dssp EEEEEEETT-TCTTC------CB-CCSCCEEEECT---TSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCSTT
T ss_pred ceeEEECCC-Ccccc------Cc-cccCCEEEEec---CCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCCCc
Confidence 789998732 12111 22 23346665443 33334556665 346778894 99999999987532
Q ss_pred ----CcccEEeecCCCCcccEEEecCC-e-EEEEEEeec
Q 005433 625 ----THALVCEDFSNDGLTDVILMTSN-G-VYGFVQTRQ 657 (697)
Q Consensus 625 ----~ap~iv~DfngDG~nDiIVvT~~-G-iygfv~~~~ 657 (697)
.+.|.+.|.|+||+.|.|-...- | +|=|-+...
T Consensus 247 ~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 247 VPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp SCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred cCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 34677899999999999988765 4 888876654
No 36
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=54.44 E-value=1.7e+02 Score=28.77 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=40.3
Q ss_pred EEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEee-cceEEEEc
Q 005433 531 VVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGG-DQEAVVIS 609 (697)
Q Consensus 531 ~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~G-e~~~~ils 609 (697)
+|...++|.|.++++.| ...|+..++. | |.-.++ .....++++.. ...+..+|
T Consensus 139 lv~~~~~~~v~~~d~~G-----~~~w~~~~~~-~----------------~~~~~~----~~~g~~~v~~~~~~~v~~~d 192 (276)
T 3no2_A 139 LVPLFATSEVREIAPNG-----QLLNSVKLSG-T----------------PFSSAF----LDNGDCLVACGDAHCFVQLN 192 (276)
T ss_dssp EEEETTTTEEEEECTTS-----CEEEEEECSS-C----------------CCEEEE----CTTSCEEEECBTTSEEEEEC
T ss_pred EEEecCCCEEEEECCCC-----CEEEEEECCC-C----------------ccceeE----cCCCCEEEEeCCCCeEEEEe
Confidence 44556789999999976 7999977641 1 111111 12234455444 34688899
Q ss_pred CC-CCEEEEEe
Q 005433 610 PG-GSILTSID 619 (697)
Q Consensus 610 ~~-G~vl~s~~ 619 (697)
++ |+++-++.
T Consensus 193 ~~tG~~~w~~~ 203 (276)
T 3no2_A 193 LESNRIVRRVN 203 (276)
T ss_dssp TTTCCEEEEEE
T ss_pred CcCCcEEEEec
Confidence 85 99998885
No 37
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=49.16 E-value=30 Score=39.65 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=35.6
Q ss_pred eeeeeeEEeecccCCccceEEEee---c--ceEEEEcC-CCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec
Q 005433 578 TVVPTLKAFSLRVHDNQQMILAGG---D--QEAVVISP-GGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT 645 (697)
Q Consensus 578 ~~~PsL~af~lr~~~~~~~IlA~G---e--~~~~ils~-~G~vl~s~~Lp~pP~-----ap~iv~DfngDG~nDiIVvT 645 (697)
++=+++++--+...+...+|+..- . -.+.|+.. ++..+. .|....+ ..+-++||||||.+||+|-.
T Consensus 230 y~G~sva~gd~ngDg~~DlvvGaP~~~~~~G~V~v~~~~~~~~~~--~l~G~q~gs~FG~sva~~D~NgDG~~DLvVGA 306 (632)
T 3vi3_A 230 YLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLY--NFSGEQMASYFGYAVAATDVNGDGLDDLLVGA 306 (632)
T ss_dssp CBTSSEEEECCSSSSSCEEEEEEEEEETTEEEEEEECSSSCCEEE--EEECSSTTSCTTSEEEEECCSSSSSCEEEEEE
T ss_pred CcccEEEEEEecCCCCeEEEEeccccCCccCEEEEEECCCCcEEE--EEecccccCcCcceEEEEecCCCCccceeeec
Confidence 344566654454555555544321 1 23445553 344443 3332221 34557899999999998864
No 38
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=48.34 E-value=43 Score=32.20 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=40.1
Q ss_pred ceEEEeecceEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEEE
Q 005433 595 QMILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFVQ 654 (697)
Q Consensus 595 ~~IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giygfv~ 654 (697)
.+.+|. ...+.++|++|+.+..+.+|..|+ ..-|.++.-.-|.|.|.+|+|-|-.
T Consensus 230 ~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~----~~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 230 LIWASA-GDGVHVLTPDGDELGRVLTPQTTS----NLCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp CEEEEE-TTEEEEECTTSCEEEEEECSSCCC----EEEEESTTSCEEEEEETTEEEEEEC
T ss_pred CEEEEc-CCeEEEECCCCCEEEEEECCCCce----eEEEECCCCCEEEEEcCCeEEEEEc
Confidence 455555 778999999999999999987732 2334344445688888899987754
No 39
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=47.01 E-value=75 Score=38.66 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=44.1
Q ss_pred ceeeeeeEE-eecccCCccceEEEee-c----ceEEEEc--CCCCE--EEEEeCCCCCCccc---------EEeecCCCC
Q 005433 577 STVVPTLKA-FSLRVHDNQQMILAGG-D----QEAVVIS--PGGSI--LTSIDLPAPPTHAL---------VCEDFSNDG 637 (697)
Q Consensus 577 ~~~~PsL~a-f~lr~~~~~~~IlA~G-e----~~~~ils--~~G~v--l~s~~Lp~pP~ap~---------iv~DfngDG 637 (697)
++|--++++ --+..++..++++... + -.+-|.- .+|.+ ..+..|+..+..+. ..+|||+||
T Consensus 500 ~~FG~sva~~gD~NgDG~~Dl~VGAP~~~~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~~~~~~FG~sv~~~~D~dgDG 579 (1095)
T 3k6s_A 500 GRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDG 579 (1095)
T ss_dssp CCBTSCEEEEECSSSSSCCEEEEECTTTTTSCCBEEEEEBCSSSCBCSSCSBCCBTTSSCTTCSSEEEEEEECCCCSCSS
T ss_pred ccCccceEeecccCCCCCcCEEEeCCcCCCCCCEEEEecCCCCCCccccceEEeecCCCCccccccCceeecccccCCCC
Confidence 344445555 3556667677766442 1 1233443 23122 23344554444322 257999999
Q ss_pred cccEEEecCCeEEEEE
Q 005433 638 LTDVILMTSNGVYGFV 653 (697)
Q Consensus 638 ~nDiIVvT~~Giygfv 653 (697)
..||+|-..+.+|-|.
T Consensus 580 ~~DL~VGa~G~v~v~r 595 (1095)
T 3k6s_A 580 LVDLAVGARGQVLLLR 595 (1095)
T ss_dssp SCEEEEEESSCEEEEE
T ss_pred CccEEEEcCCCeeEec
Confidence 9999999976677774
No 40
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=43.29 E-value=37 Score=40.85 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=35.7
Q ss_pred ceeeeeeEEeecccCCccceEEEeec-----ceEEEEcCCCCEEEEEeCCCCCC-----cccEEeecCCCCcccEEEec
Q 005433 577 STVVPTLKAFSLRVHDNQQMILAGGD-----QEAVVISPGGSILTSIDLPAPPT-----HALVCEDFSNDGLTDVILMT 645 (697)
Q Consensus 577 ~~~~PsL~af~lr~~~~~~~IlA~Ge-----~~~~ils~~G~vl~s~~Lp~pP~-----ap~iv~DfngDG~nDiIVvT 645 (697)
.++=+++++--+..++....+++.+- ...+.+- ++.......|..... .-+-++||||||..||+|..
T Consensus 233 sy~G~sva~gD~~gDG~~d~~vvGaPr~~~~~G~V~i~-~~~~~~~~~l~G~q~gs~fG~sva~gD~NgDG~~DLvVGA 310 (959)
T 3fcs_A 233 GYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEIL-DSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGA 310 (959)
T ss_dssp CCTTSEEEEECCSSCSSSCEEEEEETTHHHHTCEEEEE-CTTCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEEEEEE
T ss_pred CccccEEEEEEECCCCCeeEEEEECCcccCCcceEEEE-CCCceEEEEeccccCCCCceeEEEEEEecCCCccceeEec
Confidence 34456777655555544423333321 1234442 233333344433222 23457999999999998854
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=42.75 E-value=2.1e+02 Score=26.63 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=43.3
Q ss_pred EeecccCCccceEEEeecceEEEEc-CCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCe-EEEEEE
Q 005433 585 AFSLRVHDNQQMILAGGDQEAVVIS-PGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNG-VYGFVQ 654 (697)
Q Consensus 585 af~lr~~~~~~~IlA~Ge~~~~ils-~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~G-iygfv~ 654 (697)
.+.+..++ .++.+..+..+.|.| .+|+.+..+..+. .++....|+.||. +++.+.+| |+-|-.
T Consensus 230 ~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~--~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 230 CIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPA---ISIWSVDCMSNGD--IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSS---SCEEEEEECTTSC--EEEEETTSCEEEEES
T ss_pred EEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccC---ceEEEEEEccCCC--EEEEeCCCcEEEEeC
Confidence 33343444 244444455677779 5999999887664 4667788999986 88888887 776654
No 42
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=42.65 E-value=83 Score=37.57 Aligned_cols=65 Identities=6% Similarity=0.111 Sum_probs=39.8
Q ss_pred eeEEeecccCCccceEEEeecc--------eEEEE---cC-CCCEEEEEeCCCCCCcccEEeecCCCC-cccEEEecCC
Q 005433 582 TLKAFSLRVHDNQQMILAGGDQ--------EAVVI---SP-GGSILTSIDLPAPPTHALVCEDFSNDG-LTDVILMTSN 647 (697)
Q Consensus 582 sL~af~lr~~~~~~~IlA~Ge~--------~~~il---s~-~G~vl~s~~Lp~pP~ap~iv~DfngDG-~nDiIVvT~~ 647 (697)
+|.+--|...+..++|++.-.. .+.+. +. +|+-. .+.+..-......+.|||||| ..||++...+
T Consensus 338 aL~~gDldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~~~D~g~GsF~-~~vID~g~~~~v~aaDLDGDG~dlDIV~asy~ 415 (900)
T 4a7k_A 338 QVVCADIDGDGEDEFLVAMMGADPPDFQRTGVWCYKLVDRTNMKFS-KTKVSSVSAGRIATANFHSQGSEVDIATISYS 415 (900)
T ss_dssp EEEEECTTSSSBCEEEEEEECCSSCCGGGEEEEEEEEEETTTTEEE-EEEEECSCCSEEEEECCSSSSSCCEEEEECCB
T ss_pred eEEEEecCCCCcccEEEEecCCCCccCCcceEEEEEEecCCCCcEE-EEEEcCCCcceEEEeccCCCCCcccEEEeecc
Confidence 4444444455566666553222 23333 33 44433 344444578899999999999 9999998543
No 43
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=38.26 E-value=20 Score=39.56 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=22.5
Q ss_pred EEccCCCCceeEEEecC-CCeEEEEe
Q 005433 53 VADLNGDGRKEVLVATH-DAKIQVLE 77 (697)
Q Consensus 53 v~DldGDG~~evivaT~-d~kl~v~~ 77 (697)
+.||||||.+||+|.+. .+++-+|.
T Consensus 424 ~gDlngDG~~Dl~VGa~g~~~v~l~r 449 (457)
T 3t3p_A 424 AVDIDDNGYPDLIVGAYGANQVAVYR 449 (457)
T ss_dssp EECSSSSSSCEEEEEEGGGTEEEEEC
T ss_pred eeccCCCCCccEEEecCCCCeEEEeC
Confidence 68999999999999988 47899987
No 44
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=29.77 E-value=31 Score=39.52 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.1
Q ss_pred eEEccCCCCceeEEEecC------CCeEEEEe
Q 005433 52 IVADLNGDGRKEVLVATH------DAKIQVLE 77 (697)
Q Consensus 52 iv~DldGDG~~evivaT~------d~kl~v~~ 77 (697)
.+.|+||||.+||+|... .+.+-||.
T Consensus 357 ~~gDlngDG~~DlaVGap~~~~~~~G~Vyv~~ 388 (632)
T 3vi3_A 357 PLGDLDQDGYNDVAIGAPFGGETQQGVVFVFP 388 (632)
T ss_dssp EEESSSSSSSCEEEEEETTCSTTSSCEEEEEC
T ss_pred eeeccCCCCCcCEEEeCCcCCcCCCceEEEEe
Confidence 468999999999999875 47888886
No 45
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.42 E-value=1.4e+02 Score=31.05 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=56.7
Q ss_pred ccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEeecceEEEE
Q 005433 529 GDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGGDQEAVVI 608 (697)
Q Consensus 529 ~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~Ge~~~~il 608 (697)
.-.++|+++|.|=+......|+=+. |..+ ....|.+... +......-.-+|.|+.+.++|
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~------------------g~~~-~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al 122 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGI------------------GGTE-SVSTPTLLES-IQHVFIKKVAVNSGGKHCLAL 122 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSS------------------SSSC-CEEEEEECGG-GTTSCEEEEEECTTCSEEEEE
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCC------------------CCcC-CccCCEEccc-ccCCceeEEEECcCCCeEEEE
Confidence 4478899999998886543322110 0011 2233433211 111111223467799999999
Q ss_pred cCCCCEEEEEe-----C----CCCCCcccEEeecCCCCccc-------EEEecCCe-EEEE
Q 005433 609 SPGGSILTSID-----L----PAPPTHALVCEDFSNDGLTD-------VILMTSNG-VYGF 652 (697)
Q Consensus 609 s~~G~vl~s~~-----L----p~pP~ap~iv~DfngDG~nD-------iIVvT~~G-iygf 652 (697)
+.+|++..-=. | ..+-..|..+..|.+..+.+ .+++|.+| +|+|
T Consensus 123 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTW 183 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred cCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEe
Confidence 99999875311 1 11223345555566544444 46778887 8887
No 46
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=28.73 E-value=27 Score=38.48 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.1
Q ss_pred EeecCCCCcccEEEecCC--eEEEE
Q 005433 630 CEDFSNDGLTDVILMTSN--GVYGF 652 (697)
Q Consensus 630 v~DfngDG~nDiIVvT~~--Giygf 652 (697)
+.|+|+||+.||+|-... .++-|
T Consensus 424 ~gDlngDG~~Dl~VGa~g~~~v~l~ 448 (457)
T 3t3p_A 424 AVDIDDNGYPDLIVGAYGANQVAVY 448 (457)
T ss_dssp EECSSSSSSCEEEEEEGGGTEEEEE
T ss_pred eeccCCCCCccEEEecCCCCeEEEe
Confidence 789999999999999863 46655
No 47
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=28.60 E-value=1.2e+02 Score=29.43 Aligned_cols=52 Identities=12% Similarity=0.266 Sum_probs=36.5
Q ss_pred EEEeecceEEEEcCCCCEEEEEeCCCCCCcccEEeecCCCCcccEEEecCCeEEEEE
Q 005433 597 ILAGGDQEAVVISPGGSILTSIDLPAPPTHALVCEDFSNDGLTDVILMTSNGVYGFV 653 (697)
Q Consensus 597 IlA~Ge~~~~ils~~G~vl~s~~Lp~pP~ap~iv~DfngDG~nDiIVvT~~Giygfv 653 (697)
|.++....+.+++++|+.+..+.+|..|.. .-|..| -+-|.|.|.+|+|-|-
T Consensus 252 lwv~~~~gv~~~~~~g~~~~~~~~~~~~~~----~~f~~d-~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 252 LWSSSGTGVCVFDSDGQLLGHIPTPGTASN----CTFDQA-QQRLFITGGPCLWMLP 303 (305)
T ss_dssp EEECCSSEEEEECTTSCEEEEEECSSCCCE----EEECTT-SCEEEEEETTEEEEEE
T ss_pred EEEecCCcEEEECCCCCEEEEEECCCceeE----EEEeCC-CCEEEEEcCCeEEEEE
Confidence 444445679999999999999999884332 334433 3458888888998763
No 48
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=26.59 E-value=38 Score=40.74 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=22.9
Q ss_pred eEEccCCCCceeEEEecC-CCeEEEEe
Q 005433 52 IVADLNGDGRKEVLVATH-DAKIQVLE 77 (697)
Q Consensus 52 iv~DldGDG~~evivaT~-d~kl~v~~ 77 (697)
.+.|+||||.+||+|.+. .+++-+|.
T Consensus 423 ~~gDlngDG~~Dl~VGa~g~g~v~~~r 449 (959)
T 3fcs_A 423 GAVDIDDNGYPDLIVGAYGANQVAVYR 449 (959)
T ss_dssp EEECSSSSSSCEEEEEEGGGTEEEEEC
T ss_pred eeeccCCCCCCCEEEecCCCCeEEEEe
Confidence 368999999999999998 47899987
No 49
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.93 E-value=1.3e+02 Score=30.77 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.1
Q ss_pred cccEEEEecCceEEEec
Q 005433 528 HGDVVFLTNRGEVTAYS 544 (697)
Q Consensus 528 ~~D~vFL~s~G~VTs~~ 544 (697)
+-+++|+|++|.+-++.
T Consensus 58 ~~~ll~~T~~G~~~~~~ 74 (312)
T 1suu_A 58 HDYLFMISNEGKLYLIN 74 (312)
T ss_dssp TCEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCeEEEEE
Confidence 46899999999887775
No 50
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=21.87 E-value=3.3e+02 Score=28.18 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=51.7
Q ss_pred cccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEEee----cc
Q 005433 528 HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILAGG----DQ 603 (697)
Q Consensus 528 ~~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA~G----e~ 603 (697)
+-+++|+||+|.+=.+. .|++. ++.|... ++ ....| ++|..++.--.++++- +.
T Consensus 53 ~d~ll~fT~~Gr~y~~~----------~~~lp-~~~r~~~------G~---~i~~~--l~l~~~e~i~~~~~~~~~~~e~ 110 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAK----------AYDLP-EASRTAR------GQ---HVANL--LAFQPEERIAQVIQIRGYTDAP 110 (327)
T ss_dssp TSEEEEEETTSEEEEEE----------GGGSC-BCCSSSC------CE---EHHHH--TTCCTTCCEEEEEEESSTTSSS
T ss_pred CCEEEEEeCCCeEEEEE----------HHHCc-CCCccCC------CE---EHHHc--cCCCCCCEEEEEEEeccCCCCC
Confidence 47899999999887664 23332 2344332 11 11111 2333333333333333 45
Q ss_pred eEEEEcCCCCEEEEE--eCCCCCCcccEEeecC-C---------CCcccEEEecCCeE-EEE
Q 005433 604 EAVVISPGGSILTSI--DLPAPPTHALVCEDFS-N---------DGLTDVILMTSNGV-YGF 652 (697)
Q Consensus 604 ~~~ils~~G~vl~s~--~Lp~pP~ap~iv~Dfn-g---------DG~nDiIVvT~~Gi-ygf 652 (697)
.+++++.+|.+-.+- ++..+-..-.+..-+. + ++..+|++.|+.|. |=|
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 677778888875442 3333221222222221 1 24467999999994 444
No 51
>4dh2_B Dockerin type 1; cellulosome, cohesin, type I cohesin-dockerin, Pro protein interaction, cell adhesion; 1.75A {Clostridium thermocellum}
Probab=20.98 E-value=22 Score=30.47 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.0
Q ss_pred CCeeeeccCCCceeEEE
Q 005433 423 GGLHADINGDGVLDHVQ 439 (697)
Q Consensus 423 ~~l~aDINgDGvlD~V~ 439 (697)
..+|.|+|+||.||..-
T Consensus 4 ~~~~GDvN~DG~Vn~~D 20 (82)
T 4dh2_B 4 KAVIGDVNADGVVNISD 20 (82)
T ss_dssp -CCTTCTTCSSSCSHHH
T ss_pred CCceeccCCCCcCCHHH
Confidence 45788999999988754
No 52
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=20.80 E-value=3.1e+02 Score=27.50 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=43.4
Q ss_pred EEeecccCCccceEEEeecceEEEEcCCCCEEEEEeCCCC--------CCcccEEeecCCCCcccEEEecCCeEEEEEEe
Q 005433 584 KAFSLRVHDNQQMILAGGDQEAVVISPGGSILTSIDLPAP--------PTHALVCEDFSNDGLTDVILMTSNGVYGFVQT 655 (697)
Q Consensus 584 ~af~lr~~~~~~~IlA~Ge~~~~ils~~G~vl~s~~Lp~p--------P~ap~iv~DfngDG~nDiIVvT~~Giygfv~~ 655 (697)
++..+.+....=+||......++++|++|+++....|+.- |-+==|..|- || | |-|+++-- .=|+.+
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~--~G-~-lyIvsE~n-~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA--SG-N-IYIVSEPN-RFYRFT 250 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT--TC-C-EEEEETTT-EEEEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC--CC-C-EEEEcCCc-eEEEEE
Confidence 3444444444567777777888888999999999999842 3333455554 55 3 77776543 334445
Q ss_pred ecCC
Q 005433 656 RQPG 659 (697)
Q Consensus 656 ~~~g 659 (697)
+++|
T Consensus 251 ~~~~ 254 (255)
T 3qqz_A 251 PQSS 254 (255)
T ss_dssp C---
T ss_pred ecCC
Confidence 5543
No 53
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.78 E-value=3.5e+02 Score=27.16 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=28.5
Q ss_pred cceEEEEcCCCCEEEEE--eCCCCCCcccEEeecC-C---------CCcccEEEecCCe-EEEE
Q 005433 602 DQEAVVISPGGSILTSI--DLPAPPTHALVCEDFS-N---------DGLTDVILMTSNG-VYGF 652 (697)
Q Consensus 602 e~~~~ils~~G~vl~s~--~Lp~pP~ap~iv~Dfn-g---------DG~nDiIVvT~~G-iygf 652 (697)
+..+++++.+|.+-..- ++. +-..-.....|. + ++-.+|++.|+.| +|-|
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARF 142 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence 45577778888886543 333 222222222221 1 2445799999999 4555
No 54
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.23 E-value=2e+02 Score=28.77 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=50.1
Q ss_pred cccEEEEecCceEEEecCCCCCCcceeeeeeccccccccCCCCCCCCccceeeeeeEEeecccCCccceEEE-eecceEE
Q 005433 528 HGDVVFLTNRGEVTAYSPGLHGHDAIWQWQLLTDATWSNLPSPSGMTEASTVVPTLKAFSLRVHDNQQMILA-GGDQEAV 606 (697)
Q Consensus 528 ~~D~vFL~s~G~VTs~~~~~~g~~~~~~Wq~~T~a~W~~~~~~~g~~e~~~~~PsL~af~lr~~~~~~~IlA-~Ge~~~~ 606 (697)
+-+++|+||+|.+-.+... ++... .+ ++ .|--..++|..++.--.++. -.+..++
T Consensus 44 ~~~ll~~T~~Gr~~~~~~~----------elp~~-r~--------~G-----~~i~~~i~L~~~e~Iv~~~~~~~~~~ll 99 (256)
T 1zvt_A 44 NQPVVFVDSTGRSYAIDPI----------TLPSA-RG--------QG-----EPLTGKLTLPPGATVDHMLMESDDQKLL 99 (256)
T ss_dssp TSCEEEEETTSEEEEECGG----------GSCCS-SS--------CC-----EEGGGTCCCCTTCCEEEEECCCTTCEEE
T ss_pred CCEEEEEeCCCeEEEEEHH----------HCCCc-CC--------CC-----eEeeeeecCCCCCEEEEEEEeCCCCEEE
Confidence 4689999999988777531 11111 00 01 12112344444333222222 2344577
Q ss_pred EEcCCCCEEEE--EeCCCCCCcccEEeecCC-----------CCcccEEEecCCeEE
Q 005433 607 VISPGGSILTS--IDLPAPPTHALVCEDFSN-----------DGLTDVILMTSNGVY 650 (697)
Q Consensus 607 ils~~G~vl~s--~~Lp~pP~ap~iv~Dfng-----------DG~nDiIVvT~~Giy 650 (697)
+++.+|.+-.+ -+++..-.+-..+..+.. |+-.+|+++|++|..
T Consensus 100 l~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~ 156 (256)
T 1zvt_A 100 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 156 (256)
T ss_dssp EEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEE
T ss_pred EEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeE
Confidence 77888877433 234443333333333321 344579999999954
Done!