Your job contains 1 sequence.
>005434
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDL
ERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDE
GRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVL
AQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL
NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKS
VDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF
LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFL
MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE
ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL
ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA
REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRD
YYSTETKLGTSETATAVYWRARKTLKDSTALTALPDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005434
(697 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123678 - symbol:AT4G28200 "AT4G28200" species... 2004 3.2e-207 1
UNIPROTKB|E2RMS8 - symbol:UTP6 "Uncharacterized protein" ... 318 2.8e-39 2
UNIPROTKB|F1RJ62 - symbol:UTP6 "Uncharacterized protein" ... 322 5.9e-38 2
MGI|MGI:2445193 - symbol:Utp6 "UTP6, small subunit (SSU) ... 308 6.6e-38 2
UNIPROTKB|Q9NYH9 - symbol:UTP6 "U3 small nucleolar RNA-as... 317 1.8e-37 2
UNIPROTKB|E1BYV8 - symbol:UTP6 "Uncharacterized protein" ... 307 1.8e-37 2
UNIPROTKB|A5PJN6 - symbol:UTP6 "Uncharacterized protein" ... 334 3.7e-37 2
UNIPROTKB|F1NLG7 - symbol:UTP6 "Uncharacterized protein" ... 307 2.6e-36 3
ZFIN|ZDB-GENE-040426-769 - symbol:utp6 "UTP6, small subun... 285 5.0e-32 2
CGD|CAL0000714 - symbol:orf19.2330 species:5476 "Candida ... 347 8.0e-31 1
UNIPROTKB|Q59WH2 - symbol:UTP6 "Potential U3 snoRNP prote... 347 8.0e-31 1
POMBASE|SPBC244.02c - symbol:SPBC244.02c "U3 snoRNP-assoc... 322 2.1e-26 1
SGD|S000002857 - symbol:UTP6 "Nucleolar protein" species:... 299 4.2e-24 2
RGD|1311017 - symbol:Utp6 "UTP6, small subunit (SSU) proc... 180 2.3e-23 2
UNIPROTKB|G4N9I4 - symbol:MGG_03271 "Uncharacterized prot... 280 4.5e-22 1
DICTYBASE|DDB_G0279601 - symbol:utp6 "tetratricopeptide-l... 215 4.5e-14 1
ASPGD|ASPL0000074715 - symbol:AN5010 species:162425 "Emer... 174 3.6e-11 2
FB|FBgn0030081 - symbol:CG7246 species:7227 "Drosophila m... 182 1.8e-10 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 125 4.3e-07 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 119 1.4e-06 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 113 7.2e-06 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 113 7.4e-06 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 117 9.5e-06 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 116 1.0e-05 2
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 110 1.2e-05 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 101 2.2e-05 3
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 94 0.00013 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 126 0.00016 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 106 0.00033 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 100 0.00033 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 103 0.00034 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 103 0.00034 2
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 89 0.00083 2
>TAIR|locus:2123678 [details] [associations]
symbol:AT4G28200 "AT4G28200" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0001510
"RNA methylation" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006626
"protein targeting to mitochondrion" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
EMBL:CP002687 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
EMBL:AL161572 KO:K14557 InterPro:IPR013949 Pfam:PF08640 OMA:WVEYLRM
EMBL:AY072310 EMBL:BT008394 IPI:IPI00524986 PIR:T09036
RefSeq:NP_194549.1 UniGene:At.43066 ProteinModelPortal:Q9M0I7
SMR:Q9M0I7 IntAct:Q9M0I7 STRING:Q9M0I7 PRIDE:Q9M0I7 DNASU:828935
EnsemblPlants:AT4G28200.1 GeneID:828935 KEGG:ath:AT4G28200
TAIR:At4g28200 HOGENOM:HOG000029932 InParanoid:Q9M0I7
PhylomeDB:Q9M0I7 ProtClustDB:CLSN2685549 Genevestigator:Q9M0I7
Uniprot:Q9M0I7
Length = 648
Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
Identities = 396/653 (60%), Positives = 500/653 (76%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1 MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E +LD LR+LR+KS+ R + ++ GVARI+EIYRLA MR+KGDI LW
Sbjct: 61 EVKLDELRQLRRKSVARVTKKRKK------KSVSDFAGVARIVEIYRLATMRYKGDINLW 114
Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174
Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
C SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD + ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234
Query: 282 ---G--EVENTDGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
G + EN + S E++E + VD +E+G VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct: 235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294
Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
I+EAT+LA SD+M + ILSD++RDF +P+YW+WLAR +M+ +S + E P QMQK
Sbjct: 295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353
Query: 396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
AIQV+EE L+ V SS +F++Y FLM+ I + ++E+ S ISH++ VY+KA+
Sbjct: 354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411
Query: 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
GCLTE++A YV+LYL+L K EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct: 412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471
Query: 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
SPSKAD ++FELL L KV ESESLWLMA FF +Q+ Y DKLVE++++S K
Sbjct: 472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530
Query: 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
G + FSL S ++ V++ G AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct: 531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590
Query: 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688
L NARKL++SA+A+Y Q+ LW++YYS ETKLGTSETA VYWRARKTL +S
Sbjct: 591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTSETANGVYWRARKTLNES 643
>UNIPROTKB|E2RMS8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:AAEX03006648 RefSeq:XP_853877.1 ProteinModelPortal:E2RMS8
Ensembl:ENSCAFT00000029395 GeneID:480616 KEGG:cfa:480616
NextBio:20855608 Uniprot:E2RMS8
Length = 598
Score = 318 (117.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 69/207 (33%), Positives = 113/207 (54%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EYR++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYRIQRRALFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ ++R A ++K D++LW
Sbjct: 61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ ++ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVVFCKKWATKPQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 176 (67.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 87/354 (24%), Positives = 146/354 (41%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV--YEEAL 404
D+ +I D+Q DP WD++AR ++ V E Q +A+++ EE
Sbjct: 254 DLQREIYDDLQALHTDDPLTWDYVARREL--EVESQPAGEQPATKQA-RAVELGRKEERC 310
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV--EHYISHLLTVYEKAEAMGCLTE 462
V + L T+ + E + S E + + + KA + L E
Sbjct: 311 CAVYEEAVKTLPTEAMWKCYINFCLERFTKKTSSQFLREKRLERTMMAFRKAHELRLLPE 370
Query: 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD 522
+++ L L L EA ++A + DSV +W +++ V I NS SP D
Sbjct: 371 FQYKQWIDLLLHHDFLKEALEVAVA-GTASFRDSVTMWQMKLQVLI-----NSKSP---D 421
Query: 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGESG 580
I FE + A + LW+ ++ K D + + AL++V G
Sbjct: 422 IAMCFEEA---FVHLKAQDCLPLWISWAEWSEGTKREEDTEAIFKKALLAVK----GADS 474
Query: 581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVN 639
+L + ++ + G ++AR ++K L RP V ++ I+ E S + N
Sbjct: 475 VTLKNKYLDWAYRSGGYKKARAVFKS-LQESRPFSVDFFRKIIQFEKEQESC----KMAN 529
Query: 640 ARKLFESALATYDQ-NTSLWRDYYSTETK--LGTSETATAVYWRARKTLKDSTA 690
R+ +E AL + ++ LW DY E LG E +YWRA K L+ +A
Sbjct: 530 LREYYERALREFGSVDSDLWMDYIKEELNHPLGKPENCGQIYWRAIKMLQGESA 583
Score = 123 (48.4 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 54/222 (24%), Positives = 95/222 (42%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY +V + + I + + A D+ +I D+Q DP WD++AR +
Sbjct: 225 IYKNSVSIIKGA-EFHVSLLSIAQLFDFAT--DLQREIYDDLQALHTDDPLTWDYVARRE 281
Query: 375 M-TDS-------VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAP 426
+ +S +K + ++ + ++ VYEEA+K +P+ ++ Y F ++
Sbjct: 282 LEVESQPAGEQPATKQARAVELGRKE-ERCCAVYEEAVKTLPTEAMWKCYINFCLERFTK 340
Query: 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA 486
K T L E + + + KA + L E +++ L L L EA ++A
Sbjct: 341 K---TSSQFLR---EKRLERTMMAFRKAHELRLLPEFQYKQWIDLLLHHDFLKEALEVAV 394
Query: 487 KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528
+ DSV +W +++ V I NS SP DI FE
Sbjct: 395 A-GTASFRDSVTMWQMKLQVLI-----NSKSP---DIAMCFE 427
>UNIPROTKB|F1RJ62 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:FP089481 RefSeq:XP_003131794.1 UniGene:Ssc.6804
Ensembl:ENSSSCT00000019313 GeneID:100524172 KEGG:ssc:100524172
Uniprot:F1RJ62
Length = 598
Score = 322 (118.4 bits), Expect = 5.9e-38, Sum P(2) = 5.9e-38
Identities = 69/207 (33%), Positives = 114/207 (55%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+R EI I+K+ EY+++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ ++R A ++K D++LW
Sbjct: 61 EINLLELIQRRRARIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ ++ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 159 (61.0 bits), Expect = 5.9e-38, Sum P(2) = 5.9e-38
Identities = 87/355 (24%), Positives = 145/355 (40%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ-KAIQVY--EEA 403
D+ +I D+Q DP WD++AR ++ + S+ G D P+ Q K + EE
Sbjct: 254 DLQREIYDDLQALHTDDPLTWDYVARREL-EMESQPG---DEPPTTKQAKVAEATRREER 309
Query: 404 LKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV--EHYISHLLTVYEKAEAMGCLT 461
V + L T+ + E + S + E + + + KA + L
Sbjct: 310 CCAVYEEAVKTLPTEAMWKCYLNFCMERFTKKTNSQLLREKRLERTMVAFRKAHELRLLP 369
Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
E ++ L LQ EA ++A + DSV +W +++ V I S SP
Sbjct: 370 EVQYKQWSELLLQHNLFKEALEVAGA-GTELFQDSVMMWQVKLQVLIA-----SESP--- 420
Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGES 579
D+ +FE L L LW+ ++ K D + + A+++V G
Sbjct: 421 DVAMVFEEAFVRLKPQICLP---LWISWAEWSEGAKSQEDTEAIFKKAVLAVM----GAD 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLV 638
+L ++ + G ++AR ++K L RP V ++ I+ E S +
Sbjct: 474 SVTLKDKYLDWAYRSSGYKKARAVFKS-LQESRPFSVDFFRKMIQFEKEQESC----KMA 528
Query: 639 NARKLFESALATYDQ-NTSLWRDYYSTETK--LGTSETATAVYWRARKTLKDSTA 690
N R+ +E AL + ++ LW DY E LG E +YWRA K L+ A
Sbjct: 529 NLREYYERALREFGSVDSDLWMDYIKEELDHPLGRPENCGQIYWRAMKMLQGEAA 583
Score = 128 (50.1 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 59/244 (24%), Positives = 109/244 (44%)
Query: 293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKI 352
EN+E S ++ + + R+ IY +V + + I + + A+ D+ +I
Sbjct: 208 ENLEY--SEEILKGELARI---IYKNSVSIIKGA-EFHVSLLSIAQLFDFAK--DLQREI 259
Query: 353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDG----TSEDIVPSQM----QKAIQVYEEAL 404
D+Q DP WD++AR ++ + S+ G T++ ++ ++ VYEEA+
Sbjct: 260 YDDLQALHTDDPLTWDYVARREL-EMESQPGDEPPTTKQAKVAEATRREERCCAVYEEAV 318
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464
K +P+ ++ Y F M+ K +S+L E + + + KA + L E
Sbjct: 319 KTLPTEAMWKCYLNFCMERFTKKT----NSQLLR--EKRLERTMVAFRKAHELRLLPEVQ 372
Query: 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524
++ L LQ EA ++A + DSV +W +++ V I S SP D+
Sbjct: 373 YKQWSELLLQHNLFKEALEVAGA-GTELFQDSVMMWQVKLQVLIA-----SESP---DVA 423
Query: 525 SIFE 528
+FE
Sbjct: 424 MVFE 427
>MGI|MGI:2445193 [details] [associations]
symbol:Utp6 "UTP6, small subunit (SSU) processome component,
homolog (yeast)" species:10090 "Mus musculus" [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 MGI:MGI:2445193 GO:GO:0005730 Gene3D:1.25.40.10
EMBL:AL591113 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 CTD:55813 HOGENOM:HOG000285956
HOVERGEN:HBG051886 OMA:EKEQESC OrthoDB:EOG4RBQJ7 EMBL:AF334387
EMBL:AK029151 EMBL:AK084976 EMBL:BC018250 EMBL:BC024850
EMBL:BC023920 IPI:IPI00461832 RefSeq:NP_659075.1 UniGene:Mm.274961
ProteinModelPortal:Q8VCY6 SMR:Q8VCY6 IntAct:Q8VCY6 STRING:Q8VCY6
PhosphoSite:Q8VCY6 PaxDb:Q8VCY6 PRIDE:Q8VCY6
Ensembl:ENSMUST00000043152 Ensembl:ENSMUST00000108241 GeneID:216987
KEGG:mmu:216987 UCSC:uc007kkz.1 GeneTree:ENSGT00390000016493
InParanoid:Q8VCY6 ChiTaRS:UTP6 NextBio:375498 Bgee:Q8VCY6
Genevestigator:Q8VCY6 GermOnline:ENSMUSG00000035575 Uniprot:Q8VCY6
Length = 597
Score = 308 (113.5 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 66/207 (31%), Positives = 110/207 (53%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY++ R + LK+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L +++ R R+ V R+ ++ A ++K D++LW
Sbjct: 61 EINL--LELIQR--------RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ + K+ + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 174 (66.3 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 85/355 (23%), Positives = 155/355 (43%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV--YEEAL 404
D+ +I D+Q DP WD++AR ++ + S+ G + + S+ KA+++ EE
Sbjct: 254 DLQKEIYDDLQALHTDDPLTWDYVARREL-EIESQPGEEQPV--SKQAKAVEMGRREERC 310
Query: 405 KNVPSSMIFDLYTKFLMDMIAP---KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461
V + L T+ + ++ + S +P + + + + KA + L+
Sbjct: 311 CAVYEEAVKALPTEAMWKCYITFCLERFSKKTSSVPLRGQR-LERTMLAFRKAHELKLLS 369
Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
E +++ L L+ EA ++A + + DSV +W ++ V I +S SP
Sbjct: 370 EVQYKQWIDLLLRQDLFKEALQVA-EAGTELFKDSVTMWQTKLQVLI-----DSKSP--- 420
Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGES 579
D+ FE L L LW+ ++ + K D + + A+I+V G S
Sbjct: 421 DVEMRFEEAFAHLKPQVCLP---LWISWAEWSESAKSQEDTEAIFKKAIIAVT----GAS 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLV 638
+L ++ + G ++AR ++K L RP V ++ ++ E + +V
Sbjct: 474 SVTLKEKYLDWAYRSGGYKKARAVFKS-LQESRPFSVEFFRKMMQFEKEQ----EPCKMV 528
Query: 639 NARKLFESALATYDQNTS-LWRDYYSTETK--LGTSETATAVYWRARKTLKDSTA 690
N R+ +E AL + + S LW DY E G E +YWRA K L+ +A
Sbjct: 529 NLREYYERALREFGTSDSDLWMDYIKEELNHPFGKPENCGQIYWRAMKMLQGQSA 583
Score = 123 (48.4 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 46/204 (22%), Positives = 93/204 (45%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY ++ + + I + + A+ D+ +I D+Q DP WD++AR +
Sbjct: 225 IYKNSISKIKGA-EFHVSLLAIAQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRE 281
Query: 375 MTDSVSKDGTSEDIVPSQMQKAIQ----------VYEEALKNVPSSMIFDLYTKFLMDMI 424
+ + S+ G + + S+ KA++ VYEEA+K +P+ ++ Y F ++
Sbjct: 282 L-EIESQPGEEQPV--SKQAKAVEMGRREERCCAVYEEAVKALPTEAMWKCYITFCLERF 338
Query: 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484
+ K S +P + + + + KA + L+E +++ L L+ EA ++
Sbjct: 339 SKKT-----SSVPLRGQR-LERTMLAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV 392
Query: 485 AAKLCSGKLSDSVQLWLLRISVEI 508
A + + DSV +W ++ V I
Sbjct: 393 A-EAGTELFKDSVTMWQTKLQVLI 415
>UNIPROTKB|Q9NYH9 [details] [associations]
symbol:UTP6 "U3 small nucleolar RNA-associated protein 6
homolog" species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005730
Gene3D:1.25.40.10 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 EMBL:AF244135 EMBL:AF334386
EMBL:BC015454 EMBL:BC035325 EMBL:AJ272197 IPI:IPI00020128
RefSeq:NP_060898.2 UniGene:Hs.589862 ProteinModelPortal:Q9NYH9
SMR:Q9NYH9 IntAct:Q9NYH9 MINT:MINT-1435439 STRING:Q9NYH9
PhosphoSite:Q9NYH9 DMDM:134047946 SWISS-2DPAGE:Q9NYH9 PaxDb:Q9NYH9
PRIDE:Q9NYH9 Ensembl:ENST00000261708 GeneID:55813 KEGG:hsa:55813
UCSC:uc002hgq.3 CTD:55813 GeneCards:GC17M030187 HGNC:HGNC:18279
HPA:HPA025936 neXtProt:NX_Q9NYH9 PharmGKB:PA142672224
HOGENOM:HOG000285956 HOVERGEN:HBG051886 InParanoid:Q9NYH9
OMA:EKEQESC OrthoDB:EOG4RBQJ7 GenomeRNAi:55813 NextBio:60986
ArrayExpress:Q9NYH9 Bgee:Q9NYH9 CleanEx:HS_UTP6
Genevestigator:Q9NYH9 GermOnline:ENSG00000108651 Uniprot:Q9NYH9
Length = 597
Score = 317 (116.6 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 71/227 (31%), Positives = 122/227 (53%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY+++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFQRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ R+ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK 267
P +L+ EY RMEL + KL+ K +K ++ ++ D E+
Sbjct: 171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASMDVENPDYSEE 215
Score = 160 (61.4 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 88/354 (24%), Positives = 148/354 (41%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV--YEEAL 404
D+ +I D+Q DP WD++AR ++ + +E+ ++ KA++V EE
Sbjct: 254 DLQKEIYDDLQALHTDDPLTWDYVARREL----EIESQTEEQPTTKQAKAVEVGRKEERC 309
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEE--TRDSELPSHVEHYISHLLTVYEKAEAMGCLTE 462
V + L T+ + E T+ S + +TV+ KA + L+E
Sbjct: 310 CAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRKAHELKLLSE 369
Query: 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD 522
+ L L EA ++A + DS +W L++ V I S SP D
Sbjct: 370 CQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVLIE-----SKSP---D 420
Query: 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGESG 580
I +FE L L LW+ ++ K D + + AL++V G
Sbjct: 421 IAMLFEEAFVHLKPQVCLP---LWISWAEWSEGAKSQEDTEAVFKKALLAVI----GADS 473
Query: 581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVN 639
+L + ++ + G ++AR ++K L RP V ++ I+ E S ++ N
Sbjct: 474 VTLKNKYLDWAYRSGGYKKARAVFKS-LQESRPFSVDFFRKMIQFEKEQESC----NMAN 528
Query: 640 ARKLFESALATYDQ-NTSLWRDYYSTETK--LGTSETATAVYWRARKTLKDSTA 690
R+ +E AL + ++ LW DY E LG E +YWRA K L+ +A
Sbjct: 529 IREYYERALREFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESA 582
Score = 115 (45.5 bits), Expect = 9.2e-33, Sum P(2) = 9.2e-33
Identities = 62/261 (23%), Positives = 111/261 (42%)
Query: 283 EVENTDGSQPENMESQK-SVDL----FREQGLR--VLQTIYSGAVEALPSSFNLRQRFFE 335
E+ + + + E E +K S+D+ + E+ L+ + IY +V + +
Sbjct: 186 ELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGA-EFHVSLLS 244
Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDI----V 389
I + + A+ D+ +I D+Q DP WD++AR L++ + T++ V
Sbjct: 245 IAQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEV 302
Query: 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEE--TRDSELPSHVEHYISHL 447
+ ++ VYEEA+K +P+ ++ Y F ++ K R L
Sbjct: 303 GRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRL--------ERT 354
Query: 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507
+TV+ KA + L+E + L L EA ++A + DS +W L++ V
Sbjct: 355 MTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVL 413
Query: 508 IRCVTRNSFSPSKADILSIFE 528
I S SP DI +FE
Sbjct: 414 IE-----SKSP---DIAMLFE 426
>UNIPROTKB|E1BYV8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 InterPro:IPR013949 Pfam:PF08640
GeneTree:ENSGT00390000016493 EMBL:AADN02030009 IPI:IPI00820452
Ensembl:ENSGALT00000038759 ArrayExpress:E1BYV8 Uniprot:E1BYV8
Length = 597
Score = 307 (113.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 72/217 (33%), Positives = 113/217 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ V+ RLE V EL+ LER GLFT EI ++K+ EY+++R + K+D++ YI+Y
Sbjct: 1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ G +E + R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FC+Q ++ KV + ++ HP P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
P +L+ EY RMEL K + K L K L
Sbjct: 171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207
Score = 171 (65.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 82/352 (23%), Positives = 160/352 (45%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQM----QKAIQVY 400
D+ +IL +Q ++ +P WD++AR L++ S + T++ + S+M ++ V+
Sbjct: 254 DLQKEILESLQAEYADNPLTWDYMARRELELGSLKSTEPTTKQMKVSEMTQREERCCAVF 313
Query: 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460
+EA+ VP+ ++ Y F ++ K T EL + + L+V+ KA L
Sbjct: 314 DEAVTAVPTEDMWKCYITFCLERYNRK---TNSEELK---QKRLERTLSVFSKAHESSLL 367
Query: 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520
E + +++ L L+ +A ++A + + + S SV++W LR+ V I+ + N
Sbjct: 368 PEALYKQWLQLLLESSLSQKAAEVA-EAATKRFSLSVEIWQLRLQVLIQLKSDN------ 420
Query: 521 ADILSIFE-LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGES 579
+ FE K + +K L +LW+ + N K + L + +L +VA ES
Sbjct: 421 --VTQCFEEAFKHVKSK-GTLPLWTLWVEWSEV-TNSKEDTEALYQRSLHAVAP---AES 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP-GLVLYQNCIELENNLAS---VGDKD 635
++ ++ + G ++ R ++ L RP L ++ IE+E S + ++
Sbjct: 474 -VTMKEKYLDWAYRSGGYKKVRRVFTS-LHESRPLSLDFFRKMIEIEKEQESCKMLHLRE 531
Query: 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687
A + F SA D + L G E + +++WRA K L++
Sbjct: 532 YYERALREFGSA----DSDLWLEYIKEELSHPQGKPENSASIHWRAMKMLQE 579
Score = 43 (20.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEIS--EIVKQRR-KFEYRLKR 87
L A ++Y+++R +D + ++EI+ E++K+RR + Y K+
Sbjct: 34 LKKATALEYKIQRRALRKEDFIN---YIQYEINLLELIKKRRARTGYSFKK 81
>UNIPROTKB|A5PJN6 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005730 GO:GO:0006396 Gene3D:1.25.40.10
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640 CTD:55813
HOGENOM:HOG000285956 HOVERGEN:HBG051886 OMA:EKEQESC
OrthoDB:EOG4RBQJ7 GeneTree:ENSGT00390000016493 EMBL:DAAA02048528
EMBL:BC142183 IPI:IPI00710076 RefSeq:NP_001092610.1
UniGene:Bt.20427 STRING:A5PJN6 Ensembl:ENSBTAT00000020740
GeneID:614984 KEGG:bta:614984 InParanoid:A5PJN6 NextBio:20899389
Uniprot:A5PJN6
Length = 598
Score = 334 (122.6 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 73/207 (35%), Positives = 112/207 (54%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+V+Q R+E + EL LER GLF+ EI I+++ + EYR++R S LK D++ Y++Y
Sbjct: 1 MAEVIQERVEDRLPELQQLERTGLFSHAEIKAIIRKALELEYRIQRRSLLKDDFIRYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + K R RV + RI ++R A +++K D+ LW
Sbjct: 61 EIHL--LDLIEK--------RRARVGYTFKKDEIEDPIIHRIQSVFRRASIKWKDDVRLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FCR+ N + K+ + ++ FH PG+WI AA WE + + +AR L LR
Sbjct: 111 LSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWELEDRFSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPRCPKLYEEYFRMELMHAEKLRKEK 197
Score = 138 (53.6 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 81/352 (23%), Positives = 149/352 (42%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV--YEEAL 404
D+ +I +D++ DP WD++AR ++ V + E++ ++ KA +V EE
Sbjct: 254 DLQREIYNDLKALHADDPVTWDYVARQEL---VIESQPVEELPATKQAKAKEVGRREERC 310
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV--EHYISHLLTVYEKAEAMGCLTE 462
V + + T+ + E + S + + + + + KA + L E
Sbjct: 311 CAVYEEAVKTVPTEAMWKCYMNFCMERFTKKTSSRLLRKKRLERTMVAFWKAHELKLLPE 370
Query: 463 DIAHRYVT-LYLQLGKLDEARKLAAKLCSGKL-SDSVQLWLLRISVEIRCVTRNSFSPSK 520
+ +R ++ L L L E+ ++A KL SV++W +++ +T S SK
Sbjct: 371 -LQYRQLSKLLLHRQLLKESLEVAD--AGVKLFKKSVEMWQVKLEA---LITSESHEMSK 424
Query: 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGE 578
FE LK ++ LWL ++ + ++ + + + A+ + G
Sbjct: 425 G-FEQAFEYLK---PQICL----PLWLTWAQWSEDAGKQEETEAIYKRAIFGLP----GA 472
Query: 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSL 637
+ +N + G ++AR+++K L RP V ++ I+ E S +
Sbjct: 473 DSVPVKEMYLNWAYRSGGYKKARDVFKS-LQENRPFSVDFFRKMIQFEKEQESC----KM 527
Query: 638 VNARKLFESALATYDQNTS-LWRDYYSTETK--LGTSETATAVYWRARKTLK 686
N R+ +E AL + N S LW DY E LG E +YWRA K L+
Sbjct: 528 ENLREYYERALREFGTNDSDLWMDYIKEELNHPLGRPENCGQIYWRAMKMLQ 579
Score = 110 (43.8 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 54/227 (23%), Positives = 100/227 (44%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY + + S+ I + A+ D+ +I +D++ DP WD++AR +
Sbjct: 225 IYKNSTSVIKSA-KFHVSLLSIARLFDFAK--DLQREIYNDLKALHADDPVTWDYVARQE 281
Query: 375 MT-DS-------VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAP 426
+ +S +K +++ V + ++ VYEEA+K VP+ ++ Y F M+
Sbjct: 282 LVIESQPVEELPATKQAKAKE-VGRREERCCAVYEEAVKTVPTEAMWKCYMNFCMERFT- 339
Query: 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT-LYLQLGKLDEARKLA 485
KK +R + + + + KA + L E + +R ++ L L L E+ ++A
Sbjct: 340 KKTSSRLLR-----KKRLERTMVAFWKAHELKLLPE-LQYRQLSKLLLHRQLLKESLEVA 393
Query: 486 AKLCSGKL-SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531
KL SV++W +++ +T S SK FE LK
Sbjct: 394 D--AGVKLFKKSVEMWQVKLEA---LITSESHEMSKG-FEQAFEYLK 434
>UNIPROTKB|F1NLG7 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 InterPro:IPR013949 Pfam:PF08640
OMA:EKEQESC GeneTree:ENSGT00390000016493 EMBL:AADN02030009
IPI:IPI00585249 Ensembl:ENSGALT00000005162 ArrayExpress:F1NLG7
Uniprot:F1NLG7
Length = 599
Score = 307 (113.1 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 72/217 (33%), Positives = 113/217 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ V+ RLE V EL+ LER GLFT EI ++K+ EY+++R + K+D++ YI+Y
Sbjct: 1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ G +E + R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FC+Q ++ KV + ++ HP P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
P +L+ EY RMEL K + K L K L
Sbjct: 171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207
Score = 157 (60.3 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 69/292 (23%), Positives = 136/292 (46%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQM----QKAIQVY 400
D+ +IL +Q ++ +P WD++AR L++ S + T++ + S+M ++ V+
Sbjct: 254 DLQKEILESLQAEYADNPLTWDYMARRELELGSLKSTEPTTKQMKVSEMTQREERCCAVF 313
Query: 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460
+EA+ VP+ ++ Y F ++ K T EL + + L+V+ KA L
Sbjct: 314 DEAVTAVPTEDMWKCYITFCLERYNRK---TNSEELK---QKRLERTLSVFSKAHESSLL 367
Query: 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520
E + +++ L L+ +A ++A + + + S SV++W LR+ V I+ + N
Sbjct: 368 PEALYKQWLQLLLESSLSQKAAEVA-EAATKRFSLSVEIWQLRLQVLIQLKSDN------ 420
Query: 521 ADILSIFE-LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGES 579
+ FE K + +K L +LW+ + N K + L + +L +VA ES
Sbjct: 421 --VTQCFEEAFKHVKSK-GTLPLWTLWVEWSEV-TNSKEDTEALYQRSLHAVAP---AES 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP-GLVLYQNCIELENNLAS 630
++ ++ + G ++ R ++ L RP L ++ IE+E S
Sbjct: 474 -VTMKEKYLDWAYRSGGYKKVRRVFTS-LHESRPLSLDFFRKMIEIEKEQES 523
Score = 43 (20.2 bits), Expect = 2.6e-36, Sum P(3) = 2.6e-36
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 632 GDKDSLVNARKLFESALATYDQNT 655
G K S RKL E +LA+Y+ T
Sbjct: 553 GAKSSPGQTRKLCEYSLASYEDVT 576
Score = 43 (20.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEIS--EIVKQRR-KFEYRLKR 87
L A ++Y+++R +D + ++EI+ E++K+RR + Y K+
Sbjct: 34 LKKATALEYKIQRRALRKEDFIN---YIQYEINLLELIKKRRARTGYSFKK 81
Score = 42 (19.8 bits), Expect = 5.9e-24, Sum P(2) = 5.9e-24
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 641 RKLFESALATYDQNTSLWRDYYST-ETKLGT 670
+++ ES A Y N W DY + E +LG+
Sbjct: 257 KEILESLQAEYADNPLTW-DYMARRELELGS 286
>ZFIN|ZDB-GENE-040426-769 [details] [associations]
symbol:utp6 "UTP6, small subunit (SSU) processome
component, homolog (yeast)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-040426-769 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013949 Pfam:PF08640
HOVERGEN:HBG051886 EMBL:BC044444 IPI:IPI00502395 UniGene:Dr.77391
ProteinModelPortal:Q803K2 STRING:Q803K2 PRIDE:Q803K2
InParanoid:Q803K2 ArrayExpress:Q803K2 Bgee:Q803K2 Uniprot:Q803K2
Length = 594
Score = 285 (105.4 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
Identities = 66/214 (30%), Positives = 113/214 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MAD+VQ RLE + L+ LER GLFT E+ ++K+ EY+L R K D++AYI++
Sbjct: 1 MADIVQQRLEDRIPGLEQLERVGLFTNKEVKSMLKRSTALEYKLHRAIQCKDDFIAYIQF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L + R+ IG RE + I ++R A +++ D++LW
Sbjct: 61 EINTLGLIKKRRARIGYHFKREEIEYPI----------IQGINSVFRRATSKWQEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ F ++ ++ K+L ++ HP P +WI AA E + + +AR L LR
Sbjct: 111 LSHVAFNKKWGSKTQLSKILLSMLAIHPDKPALWIMAAKCEMEDRNSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDK 254
P ++++++EY RMEL + K++ ++ L + K
Sbjct: 171 FHPENKKVYLEYFRMELMHAEKMRKQQQELEQAK 204
Score = 143 (55.4 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
Identities = 78/324 (24%), Positives = 139/324 (42%)
Query: 268 RWINENKGLFMP-LDGEVENTDGSQPENME-SQKSVDL----FREQGL--RVLQTIYSGA 319
R+ ENK +++ E+ + + + + E Q +D+ F + L ++ + IY A
Sbjct: 170 RFHPENKKVYLEYFRMELMHAEKMRKQQQELEQAKIDVGEYQFSPEILSGKLAEVIYRDA 229
Query: 320 VEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378
+ + + F L +I + + D+ DKIL D+Q + D WD++A+ ++ DS
Sbjct: 230 AQKIKGAEFVLS--LLQIAAIFDFTK--DLQDKILQDLQSQYSDDCLMWDFMAKREL-DS 284
Query: 379 V------SKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETR 432
S G + D + ++ VYEEALK++ S ++ Y F + K +T
Sbjct: 285 AGAPELQSAKGRASD-TDRREERCCLVYEEALKSLNSEAMWTCYVTFCFERY---KRKTN 340
Query: 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492
+EL E LL V + A L E ++ + L G A ++A +
Sbjct: 341 VTELK---EKRKERLLRVLQSAHDAQLLQETFYKNWLQVLLSSGDTITATQIATTAAQ-R 396
Query: 493 LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS-AL-ESESLWLMAL 550
S SV++W + + SP + E LK I K S A+ + ++ W MA
Sbjct: 397 FSQSVEMWSFSLQTLVHLK-----SPEAGPLFQ--EALKHISLKESLAIWQMQADWSMAS 449
Query: 551 KFFMNQKHYFDK--LVEIALISVA 572
+ + +F K L + +S A
Sbjct: 450 QTPKETEAFFQKGILSPVPAVSAA 473
Score = 97 (39.2 bits), Expect = 3.3e-27, Sum P(2) = 3.3e-27
Identities = 59/248 (23%), Positives = 98/248 (39%)
Query: 447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506
LL V + A L E ++ + L G A ++A + S SV++W +
Sbjct: 352 LLRVLQSAHDAQLLQETFYKNWLQVLLSSGDTITATQIATTAAQ-RFSQSVEMWSFSLQT 410
Query: 507 EIRCVTRNSFSPSKADILSIFELLKCILTKVS-AL-ESESLWLMALKFFMNQKHYFDK-- 562
+ SP + E LK I K S A+ + ++ W MA + + +F K
Sbjct: 411 LVHLK-----SPEAGPLFQ--EALKHISLKESLAIWQMQADWSMASQTPKETEAFFQKGI 463
Query: 563 LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP--RPGLV-LYQ 619
L + +S A + + + G ++AR K F++L RP +
Sbjct: 464 LSPVPAVSAA----------IKEKYLEWSYKTGGYKRAR---KTFVSLHEHRPFTKEFFL 510
Query: 620 NCIELENNLASVGDKDSLVNARKLFESALATY-DQNTSLWRDYYSTET-KLGTSETATAV 677
I++E + + N R +E L + + SLW DY E + G E +
Sbjct: 511 QMIQIEKEQ----ETPKMSNLRDCYERVLREFGSSDESLWIDYIKEELGRHGNPENCGKI 566
Query: 678 YWRARKTL 685
+WRA KTL
Sbjct: 567 HWRAVKTL 574
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKR 87
L + ++Y+L R + DD F + + I K+R + Y KR
Sbjct: 34 LKRSTALEYKLHRAIQCKDDFIAYIQFEINTLGLIKKRRARIGYHFKR 81
>CGD|CAL0000714 [details] [associations]
symbol:orf19.2330 species:5476 "Candida albicans" [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA]
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714 GO:GO:0071216
GO:GO:0036180 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640
RefSeq:XP_713935.1 RefSeq:XP_713993.1 ProteinModelPortal:Q59WH2
STRING:Q59WH2 GeneID:3644384 GeneID:3644449 KEGG:cal:CaO19.2330
KEGG:cal:CaO19.9866 Uniprot:Q59WH2
Length = 431
Score = 347 (127.2 bits), Expect = 8.0e-31, P = 8.0e-31
Identities = 80/236 (33%), Positives = 133/236 (56%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R FE+R+ +D+L Y E+
Sbjct: 1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E+ L+ LR+ R + + E + G RI+ I+ A R+ G+ ELW
Sbjct: 61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114
Query: 162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
+Y++F + NG +K KV +++++ P+ W+ AA +EF+ N N AR L Q G
Sbjct: 115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172
Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
LR+ S ELW+ Y + ELTY++KL AR+ LG R+ + +E + E K
Sbjct: 173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228
>UNIPROTKB|Q59WH2 [details] [associations]
symbol:UTP6 "Potential U3 snoRNP protein Utp6p"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714
GO:GO:0071216 GO:GO:0036180 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114
EMBL:AACQ01000113 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 RefSeq:XP_713935.1 RefSeq:XP_713993.1
ProteinModelPortal:Q59WH2 STRING:Q59WH2 GeneID:3644384
GeneID:3644449 KEGG:cal:CaO19.2330 KEGG:cal:CaO19.9866
Uniprot:Q59WH2
Length = 431
Score = 347 (127.2 bits), Expect = 8.0e-31, P = 8.0e-31
Identities = 80/236 (33%), Positives = 133/236 (56%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R FE+R+ +D+L Y E+
Sbjct: 1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E+ L+ LR+ R + + E + G RI+ I+ A R+ G+ ELW
Sbjct: 61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114
Query: 162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
+Y++F + NG +K KV +++++ P+ W+ AA +EF+ N N AR L Q G
Sbjct: 115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172
Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
LR+ S ELW+ Y + ELTY++KL AR+ LG R+ + +E + E K
Sbjct: 173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228
>POMBASE|SPBC244.02c [details] [associations]
symbol:SPBC244.02c "U3 snoRNP-associated protein Utp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0030490
"maturation of SSU-rRNA" evidence=ISO] [GO:0030515 "snoRNA binding"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
[GO:0032153 "cell division site" evidence=IDA] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR003107 SMART:SM00386
PomBase:SPBC244.02c GO:GO:0005829 GO:GO:0005730 GO:GO:0032153
GO:GO:0044732 EMBL:CU329671 GO:GO:0030515 GenomeReviews:CU329671_GR
GO:GO:0032040 GO:GO:0030490 GO:GO:0005732 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 PIR:T39963 RefSeq:NP_596813.1
STRING:O60188 EnsemblFungi:SPBC244.02c.1 GeneID:2540651
KEGG:spo:SPBC244.02c OrthoDB:EOG4STWD9 NextBio:20801775
Uniprot:O60188
Length = 488
Score = 322 (118.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 74/210 (35%), Positives = 111/210 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ VQY +E+ V EL+DL + +F R EI+ I+K RR FE +L R D+L+YI+Y
Sbjct: 1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L+ LR R K R+ G ++L ++ A +F GD+ LW
Sbjct: 61 EINLETLRAKRHK----------RLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLW 110
Query: 162 FKYMEFCRQRKNGRMK-KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ + ++ K + K+ ++ HP +W+ A EF N NV+AARALM LR
Sbjct: 111 LDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVAL 250
+ + +W Y R+EL+Y+ KL AR L
Sbjct: 171 LNQENPVIWAAYFRLELSYMTKLFARSQIL 200
>SGD|S000002857 [details] [associations]
symbol:UTP6 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0030515 "snoRNA binding" evidence=IPI] [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0032040 "small-subunit processome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000462
"maturation of SSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 SGD:S000002857
EMBL:U33007 GO:GO:0030515 EMBL:BK006938 Gene3D:1.25.40.10
EMBL:M95396 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472 GO:GO:0000480
GO:GO:0034388 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 GeneTree:ENSGT00390000016493 OrthoDB:EOG4STWD9
PIR:S69728 RefSeq:NP_010737.1 ProteinModelPortal:Q02354 SMR:Q02354
DIP:DIP-6479N IntAct:Q02354 MINT:MINT-475620 STRING:Q02354
PaxDb:Q02354 PeptideAtlas:Q02354 EnsemblFungi:YDR449C GeneID:852060
KEGG:sce:YDR449C CYGD:YDR449c HOGENOM:HOG000065928 OMA:WISCAKY
NextBio:970334 Genevestigator:Q02354 GermOnline:YDR449C
Uniprot:Q02354
Length = 440
Score = 299 (110.3 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 68/209 (32%), Positives = 110/209 (52%)
Query: 47 QYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLD 106
+Y LE+ + E+DDL +GLFT++E+S I+K+R FE+RL DY+ YI YES ++
Sbjct: 5 RYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNVN 64
Query: 107 ALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYME 166
LR R K I +V RI IY+ +F D++ W Y+
Sbjct: 65 KLRAKRCKRI-------LQVKKTNSLSDWSIQ--QRIGFIYQRGTNKFPQDLKFWAMYLN 115
Query: 167 FCRQRKNG----RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222
+ + R N ++ + Q+++ HP +WI A +E++ + N + R + QNGLR
Sbjct: 116 YMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFN 175
Query: 223 PTSEELWVEYLRMELTYLNKLKARKVALG 251
P +LW EY++ EL ++ KL R+ +G
Sbjct: 176 PDVPKLWYEYVKFELNFITKLINRRKVMG 204
Score = 38 (18.4 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 267 KRWINENKGLFMPLDGEVENTDGSQPENM---ESQKSVDLFRE 306
K +IN++KG + D ++ + N ES + + LF E
Sbjct: 283 KHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDE 325
>RGD|1311017 [details] [associations]
symbol:Utp6 "UTP6, small subunit (SSU) processome component,
homolog (yeast)" species:10116 "Rattus norvegicus" [GO:0005622
"intracellular" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 RGD:1311017 GO:GO:0005730
GO:GO:0006396 Gene3D:1.25.40.10 GeneTree:ENSGT00390000016493
IPI:IPI00768927 Ensembl:ENSRNOT00000019044 Uniprot:F1M805
Length = 495
Score = 180 (68.4 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 154 FKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212
+K D++LW Y+ FC++ + K+ + ++ H P +WI AA WE + L+ +AR
Sbjct: 1 WKDDVQLWLSYIVFCKKWGTKAHLSKIFSNMLAIHSNKPALWIMAAKWEMEDRLSSESAR 60
Query: 213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
L LR P +L+ EY RMEL + KL+ K
Sbjct: 61 QLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEK 95
Score = 170 (64.9 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 87/355 (24%), Positives = 155/355 (43%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV--YEEAL 404
D+ +I D+Q DP WD++AR ++ + S+ G + + S+ KA+++ EE
Sbjct: 152 DLQKEIYDDLQALHTDDPLTWDYVARREL-EIESQPGEEQPV--SKQAKAVEMGRREERC 208
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVE---HYISHLLTVYEKAEAMGCLT 461
V + L T+ + E R S+ S V + + + KA + L+
Sbjct: 209 CAVYEEAVRTLPTEAMWKCYITFCLE-RFSKKTSSVSLRGQRLERTMRAFRKAHELKLLS 267
Query: 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521
E +++ L L+ EA ++A + + DSV +W ++ V I +S SP
Sbjct: 268 EVQYKQWIDLLLRQDLFKEALQVA-EAGTELFKDSVTMWQTKLLVLI-----DSKSP--- 318
Query: 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGES 579
D+ FE L L SLW+ ++ + + D + + AL++V G +
Sbjct: 319 DVGVHFEEAFAHLKPQVCL---SLWISWAEWSESVESQEDTEAIFKRALLAVT----GAN 371
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLV 638
+L ++ + G ++AR ++K L RP V ++ ++ E D +V
Sbjct: 372 SITLKEKYLDWAYRSGGYKKARAVFKS-LQESRPFSVEFFRKMMQFEKEQ----DSSKMV 426
Query: 639 NARKLFESALATYDQNTS-LWRDYYSTETK--LGTSETATAVYWRARKTLKDSTA 690
N R+ +E AL + S LW DY + E G E +YWRA + L+ +A
Sbjct: 427 NLREYYERALREFGSTDSDLWLDYMNEELNHPFGKPENCGQIYWRAMRMLQGQSA 481
Score = 115 (45.5 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 46/204 (22%), Positives = 91/204 (44%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
+Y AV + + I + + A+ D+ +I D+Q DP WD++AR +
Sbjct: 123 VYKSAVSKIKGA-EFHVSLLAISQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRE 179
Query: 375 MTDSVSKDGTSEDIVPSQMQKAIQ----------VYEEALKNVPSSMIFDLYTKFLMDMI 424
+ + S+ G + + S+ KA++ VYEEA++ +P+ ++ Y F ++
Sbjct: 180 L-EIESQPGEEQPV--SKQAKAVEMGRREERCCAVYEEAVRTLPTEAMWKCYITFCLERF 236
Query: 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484
+ K T L + + + KA + L+E +++ L L+ EA ++
Sbjct: 237 SKK---TSSVSLRGQ---RLERTMRAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV 290
Query: 485 AAKLCSGKLSDSVQLWLLRISVEI 508
A + + DSV +W ++ V I
Sbjct: 291 A-EAGTELFKDSVTMWQTKLLVLI 313
Score = 50 (22.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 19/96 (19%), Positives = 39/96 (40%)
Query: 601 REMYKRFLALPRPGLVLYQNCIELENN--LASVGDKDSLVNARKLFESALATYDQNT--S 656
++++K L + G L+++ + + L + K V FE A A S
Sbjct: 281 QDLFKEALQVAEAGTELFKDSVTMWQTKLLVLIDSKSPDVGVH--FEEAFAHLKPQVCLS 338
Query: 657 LWRDYYSTETKLGTSETATAVYWRARKTLKDSTALT 692
LW + + + E A++ RA + + ++T
Sbjct: 339 LWISWAEWSESVESQEDTEAIFKRALLAVTGANSIT 374
>UNIPROTKB|G4N9I4 [details] [associations]
symbol:MGG_03271 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 EMBL:CM001234
KO:K14557 InterPro:IPR013949 Pfam:PF08640 RefSeq:XP_003716695.1
EnsemblFungi:MGG_03271T0 GeneID:2676576 KEGG:mgr:MGG_03271
Uniprot:G4N9I4
Length = 411
Score = 280 (103.6 bits), Expect = 4.5e-22, P = 4.5e-22
Identities = 95/374 (25%), Positives = 170/374 (45%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
+AD ++ LE+ V +L + E + +FTR EI +V++R FE+R+ P D+LAY ++
Sbjct: 4 VADKARFFLEQAVPQLREFEDKEIFTRDEIRNLVRKRTDFEHRILAPGSKAPDFLAYADW 63
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L+ LR R +G R++ GV R+ +I+ V R G + +W
Sbjct: 64 ERGLETLRARRCARLGI-----RQLTHQHA-------GVGRLGQIHERGVNRDPGSVHMW 111
Query: 162 FKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+E Q+ R ++V + +R HP+ +W N ++ ARA G R
Sbjct: 112 RSYLEHLSQQGAAKRWRRVATRALRLHPQDAELWTLVGR-RSAANGDMDGARAYFLRGCR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWI---NENKGLF 277
C S +WVEY R+E+ +L K+++R G+ +R + AD+ I +++
Sbjct: 171 FCTKSVFIWVEYARVEMEWLAKVESR--GKGKKALAALRKEQSADDSDQIKLKDDSDESD 228
Query: 278 MPLDGE-VENTDGSQPENMESQKSVDLFREQGLRVLQT--IYSGAVEALPSSFNLRQRFF 334
DG + + + + + +E Q++ L E+ + L+ GA+ +Q+FF
Sbjct: 229 DDDDGNMIPDREMAAAKALERQQAPKLVDEEAVEKLEKSPALGGAIPRAIFDIATKQKFF 288
Query: 335 EIVEAT---NLAQS--------DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDG 383
E A N+ D+ +L M + F P WD R + +D
Sbjct: 289 EATSAEAFFNMFSRFIFTVEPCADLIQHVLDTMMKSFERHPATWDCYIRQPLLPV--QDF 346
Query: 384 TSEDIVPSQMQKAI 397
T+ D P +++++
Sbjct: 347 TTADF-PRALRESL 359
>DICTYBASE|DDB_G0279601 [details] [associations]
symbol:utp6 "tetratricopeptide-like helical
domain-containing protein (TPR)" species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0030490 "maturation of SSU-rRNA" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
dictyBase:DDB_G0279601 GO:GO:0005730 GenomeReviews:CM000152_GR
GO:GO:0030515 Gene3D:1.25.40.10 EMBL:AAFI02000031 GO:GO:0030490
GO:GO:0005732 RefSeq:XP_641682.1 IntAct:Q54WN5
EnsemblProtists:DDB0233969 GeneID:8622090 KEGG:ddi:DDB_G0279601
eggNOG:COG5191 KO:K14557 OMA:MELTYIS InterPro:IPR013949
Pfam:PF08640 Uniprot:Q54WN5
Length = 609
Score = 215 (80.7 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 92/378 (24%), Positives = 179/378 (47%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQR--KNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203
++ A +F D LW + +R K G ++ + + P+ +W AA +EF+
Sbjct: 92 LFGSATKKFPKDEALWINALNIRMKRASKEGT-GRLFSIALSNLPRSAKLWKLAATFEFE 150
Query: 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRD 263
N N+ AR L+Q G++ T + LW + MELTY++ L + + DK + + +
Sbjct: 151 VNKNIQNARNLIQAGIQFNKTDKSLWHYFFLMELTYISLLFSDITFI--DK-KIEEEEEE 207
Query: 264 ADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA- 322
A + + K + D + T G + + + K L R Q + Q ++ A+++
Sbjct: 208 AIKLNLDSLRKSEKIEKDEFI--TFGKEILSADKLKQSSLIRGQ---IAQIVFRKAIKSS 262
Query: 323 LPSSFNLRQRFFEIV--------EATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARL 373
+ F+ R+ F++I ++ N + + + +IL + DF D K + +LA
Sbjct: 263 IGQDFDFRKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA-- 320
Query: 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETR 432
S+ + +SE + ++ + ++ + L + S S +F+ Y F+ +I K +
Sbjct: 321 ----SIEQSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFN-YIHFIRQIIVDIK--LK 373
Query: 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492
+++L +E+ LL Y+ + L E Y+ L L+LGK ++A K++ + S K
Sbjct: 374 ENKL---IENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEE--SVK 428
Query: 493 L-SDSVQLWLLRISVEIR 509
L +S QLW RI++ I+
Sbjct: 429 LFKNSNQLWNQRINLLIK 446
Score = 215 (80.7 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 86/395 (21%), Positives = 177/395 (44%)
Query: 44 DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYES 103
D V + ++++++E L G+ ++ E +I+K+R E ++ + K D+L YI+YE
Sbjct: 2 DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYEL 61
Query: 104 QLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFK 163
+LD L R G+ + + + ++ A +F D LW
Sbjct: 62 ELDRLFHKR--------GKAKNIEFDYRLRSALRHAII----LFGSATKKFPKDEALWIN 109
Query: 164 YMEFCRQR--KNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
+ +R K G ++ + + P+ +W AA +EF+ N N+ AR L+Q G++
Sbjct: 110 ALNIRMKRASKEGT-GRLFSIALSNLPRSAKLWKLAATFEFEVNKNIQNARNLIQAGIQF 168
Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALG----EDKGTLVRDHRDADEKRWINENKGLF 277
T + LW + MELTY++ L + + E++ ++ + D+ K E K F
Sbjct: 169 NKTDKSLWHYFFLMELTYISLLFSDITFIDKKIEEEEEEAIKLNLDSLRKSEKIE-KDEF 227
Query: 278 MPLDGEVENTDG-SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEI 336
+ E+ + D Q + Q + +FR + +++ + + + +F +I
Sbjct: 228 ITFGKEILSADKLKQSSLIRGQIAQIVFR----KAIKSSIGQDFDFRKHFYKIASKFLDI 283
Query: 337 -VEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394
++ N + + + +IL + DF D K + +LA S+ + +SE + ++
Sbjct: 284 GKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA------SIEQSKSSEPSLLKRLN 337
Query: 395 KAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKK 428
+ ++ + L + S S +F+ Y F+ +I K
Sbjct: 338 NSTKILNQGLTIIKSESYLFN-YIHFIRQIIVDIK 371
>ASPGD|ASPL0000074715 [details] [associations]
symbol:AN5010 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001303 EnsemblFungi:CADANIAT00005382
OMA:ARTYMQR Uniprot:C8V8L4
Length = 264
Score = 174 (66.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 184 IRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243
+R HP +WIYAA + + + +++ AR MQ GLR C TS +LW++Y ++EL Y+ KL
Sbjct: 4 LRLHPTKADLWIYAAHYSVEDHADMSQARTYMQRGLRFCKTSRKLWIQYAKLELIYITKL 63
Query: 244 KARKVALGEDK 254
AR+ LG D+
Sbjct: 64 VARQRILGLDE 74
Score = 41 (19.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 643 LFESALATYDQNTSLWRDYY 662
+F+SA+ T+D N +++
Sbjct: 134 IFDSAIKTFDYNDCFAHEFF 153
>FB|FBgn0030081 [details] [associations]
symbol:CG7246 species:7227 "Drosophila melanogaster"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR003107 SMART:SM00386 GO:GO:0022008
EMBL:AE014298 GO:GO:0005622 GO:GO:0006396 KO:K14557
InterPro:IPR013949 Pfam:PF08640 GeneTree:ENSGT00390000016493
EMBL:AY071633 RefSeq:NP_572520.1 UniGene:Dm.5351 SMR:Q9W397
EnsemblMetazoa:FBtr0071353 GeneID:31833 KEGG:dme:Dmel_CG7246
UCSC:CG7246-RA FlyBase:FBgn0030081 InParanoid:Q9W397 OMA:WVEYLRM
OrthoDB:EOG4J0ZQ6 GenomeRNAi:31833 NextBio:775553 Uniprot:Q9W397
Length = 602
Score = 182 (69.1 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 45/188 (23%), Positives = 90/188 (47%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ + ER++ E + ++ +FT ++ EIV +R + ++ + DYL +I Y
Sbjct: 1 MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQSITDYLDFILY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E + + + D+ ++ V RI+ +YR A+ +F D LW
Sbjct: 61 E------KHMHMTIV--DKEKKMHVKLTGLKASIAT----RIMRLYREALAKFNHDRRLW 108
Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-LNVTAARALMQNGLR 220
+++F R+ + + +++ +H P +W+ AA W ++ N LN+ + ++ GL+
Sbjct: 109 SNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYEFNRLNIDRVKDILLRGLQ 168
Query: 221 VCPTSEEL 228
P SE L
Sbjct: 169 RHPDSEAL 176
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 107/509 (21%), Positives = 212/509 (41%)
Query: 200 W-EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
W +F N + + L S +LWV+ + L N+L +V K L+
Sbjct: 111 WIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVD-AALWLYEFNRLNIDRV-----KDILL 164
Query: 259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318
R + + +N+ M + + + + + EN S++ + L R ++ +Y
Sbjct: 165 RGLQRHPDSEALNKCFFDIMLKEAALASNERNLAENTLSEQDIKLER------VEAVYRN 218
Query: 319 AVEALPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376
++ ++ F +++E+ Q + + I+ DMQ F +P WD LA+ ++
Sbjct: 219 SM----ANITQLDYFVKLLESCEDHQELTGKLQRMIIDDMQEKFPREPGLWDLLAQRELR 274
Query: 377 DSVSKDGTSEDIVPSQMQ----KAIQVYEEALKN-------VPSSMIFDLYTKFLMDMIA 425
D ED+ S + K+ V +LK V S + +L T + +M
Sbjct: 275 GFHLGDLEEEDLDTSDEEPASKKSRSVNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYL 334
Query: 426 PKKEETRDSELPSHV--EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK 483
+ + ++ L +++ MG + H Y TL L R+
Sbjct: 335 DAMLALNSDGKTERILKQQCLADALQAGHRSQLMG-----VKH-YATLRKMLCTAPSGRE 388
Query: 484 LAAKLCSGKLSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541
A + + L + SV++ L ++ I+ S ++ L I+EL I + + E
Sbjct: 389 AAVTILTEALKNDSSVEMHELLLATHIQ---------SDSEPL-IYELFNKIQKSMGS-E 437
Query: 542 SESLWLMALKFFMNQKHYFD--KLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599
+ LW + ++ ++ +L EI ++ K E G L S + + Q+ +++
Sbjct: 438 ALPLWRSVILYYRTRQDSLGARRLDEIYGLA-CKAAWPEFG-ELRSDYLRYLWQERSVEE 495
Query: 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS--L 657
AR+ Y + LP L L++ ++LE++ A+ D+ SL R ++ +A Y T +
Sbjct: 496 ARKEYAKLAILPPMSLALHRQMVQLESSAAAC-DQASLKYWRMCYDF-MACYFGKTQPRV 553
Query: 658 WRDYYSTETKLGTSETATAVYWRARKTLK 686
W +Y + E G ++ + + RA TL+
Sbjct: 554 WVEYLAFERDHGEAKNISLLTQRALSTLE 582
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 125 (49.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 81/358 (22%), Positives = 140/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 137 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 190
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 191 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 250
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 251 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 308
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ + LV H D K WI E G F E + E+M+ V
Sbjct: 309 IYYFLNSPELVLVHPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 366
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 367 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 424
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 425 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 471
Score = 77 (32.2 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/138 (23%), Positives = 60/138 (43%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY 604
+WL+ +F + QK+ V ++L+ + ++ L I L +Q + R++Y
Sbjct: 524 MWLLYAQFEIRQKNL---PVSVSLLGTSIGKCPKN--KLFKGYIELELQLREFDRCRKLY 578
Query: 605 KRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDYY 662
++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 579 EKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSYI 632
Query: 663 STETKLGTSETATAVYWR 680
E + +E +Y R
Sbjct: 633 DFEIEQEETERTRNLYRR 650
Score = 53 (23.7 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 28/102 (27%), Positives = 43/102 (42%)
Query: 386 EDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS 445
E++ ++ QVY+ +L+ +P + K + + A + E R LP V S
Sbjct: 493 EELEAKDPERTRQVYQASLELIPHKKF--TFAKMWL-LYA--QFEIRQKNLPVSV----S 543
Query: 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487
L T K C + Y+ L LQL + D RKL K
Sbjct: 544 LLGTSIGK-----CPKNKLFKGYIELELQLREFDRCRKLYEK 580
Score = 44 (20.5 bits), Expect = 9.0e-05, Sum P(3) = 9.0e-05
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I+ I+++ ++ R +Y+R L + + ++ + + E + G SL R+++E A
Sbjct: 632 IDFEIEQEETERTRNLYRRLLQRTQH-VKVWISFAQFELSSRKEG---SLAKCRQIYEEA 687
Query: 648 LATY------DQNTSLWRDYYSTETKLGT 670
T ++ L + S E + GT
Sbjct: 688 NKTMRNCEEKEERLMLLESWRSFEDEFGT 716
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 119 (46.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 79/356 (22%), Positives = 140/356 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P Q + +E +L+ + LRK+ D R+ R
Sbjct: 48 QLLREAKERELELLPPPP--QQKITDVE---ELNDYK-LRKRKTFEDNIRKNRTVISNWI 101
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ ++ LW KY E + R+ + + + I
Sbjct: 102 KYAQWEESLKEIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTL 161
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV +R + + + P E+ W Y+ EL Y +AR
Sbjct: 162 PRVNQFW-YKYTYMEEMLGNVAGSRQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 219
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ + LV H D K WI E K + +V + E+M+ V
Sbjct: 220 IYIA----LLVIVHPDV--KNWIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYV 273
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPS--SFNLRQRF--FEIVEATNLAQSDDMHDKIL 353
F E + ++ IY A++ +P + NL + + FE D + K
Sbjct: 274 AFAKFEENQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRR 333
Query: 354 SDMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 334 FQYEEEVKANPHNYDAWFDYLRLVES---DADAETVR--------EVYERAIANVP 378
Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/139 (26%), Positives = 58/139 (41%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 431 IWLLYAQFEIRQKNL--PLARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 484
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 485 YEKFLEFAPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 538
Query: 662 YSTETKLGTSETATAVYWR 680
E + E +Y R
Sbjct: 539 IDFEIEQEEYEKTRNLYRR 557
Score = 52 (23.4 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 19/92 (20%), Positives = 43/92 (46%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I+ I+++ ++ R +Y+R L + + ++ + + E S G ++SL R+++E A
Sbjct: 539 IDFEIEQEEYEKTRNLYRRLLQRTQH-VKVWISFAQFE---LSAGKEESLSKCRQIYEEA 594
Query: 648 LATY------DQNTSLWRDYYSTETKLGTSET 673
++ L + + E + GT T
Sbjct: 595 NKAMRNCEEKEERVMLLESWKTFEEEFGTDST 626
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAK 487
C + Y+ L LQL + D RKL K
Sbjct: 459 CPKNKLFKGYIELELQLREFDRCRKLYEK 487
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 113 (44.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 81/358 (22%), Positives = 143/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 181 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 234
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 235 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 294
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 295 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 352
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ ++ LV H D K WI E K + +V + E+M+ V
Sbjct: 353 IY---ERFVLV--HPDV--KNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 405
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S + ++ F + I E + D I+S
Sbjct: 406 AFAKFEENQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK-KFGDRRGIEDIIVSK 463
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 464 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAEAVR--------EVYERAIANVP 510
Score = 78 (32.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 36/139 (25%), Positives = 59/139 (42%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+W++ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 563 MWILYAQFEIRQKNL--SLARRALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKL 616
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 617 YEKFLEFGPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 670
Query: 662 YSTETKLGTSETATAVYWR 680
E + +E +Y R
Sbjct: 671 IDFEIEQEETERTRNLYRR 689
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 113 (44.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 81/358 (22%), Positives = 143/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 193 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 246
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 247 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 306
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 307 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 364
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ ++ LV H D K WI E K + +V + E+M+ V
Sbjct: 365 IY---ERFVLV--HPDV--KNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 417
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S + ++ F + I E + D I+S
Sbjct: 418 AFAKFEENQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK-KFGDRRGIEDIIVSK 475
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 476 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAEAVR--------EVYERAIANVP 522
Score = 78 (32.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 36/139 (25%), Positives = 59/139 (42%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+W++ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 575 MWILYAQFEIRQKNL--SLARRALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKL 628
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 629 YEKFLEFGPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 682
Query: 662 YSTETKLGTSETATAVYWR 680
E + +E +Y R
Sbjct: 683 IDFEIEQEETERTRNLYRR 701
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 117 (46.2 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 81/358 (22%), Positives = 140/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 116 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 169
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 170 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 229
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 230 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWRP-EEQAWHSYINFELRYKEVDRART 287
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ +LV H D K WI E G F E + E+M+ V
Sbjct: 288 I-YERYIHSLVLVHPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 344
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 345 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 402
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 403 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 449
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 35/139 (25%), Positives = 58/139 (41%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ AL S+ K + L I L +Q + R++
Sbjct: 502 MWLLYAQFEIRQKNL--PFARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 555
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 556 YEKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSY 609
Query: 662 YSTETKLGTSETATAVYWR 680
E + +E +Y R
Sbjct: 610 IDFEIEQEETERTRNLYRR 628
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 116 (45.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 81/358 (22%), Positives = 141/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 73 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 126
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 127 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 186
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 187 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 244
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ ++ LV H D K WI E G F E + E+M+ V
Sbjct: 245 IY---ERFVLV--HPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 297
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 298 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 355
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 356 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 402
Score = 72 (30.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 35/139 (25%), Positives = 58/139 (41%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ AL S+ K + L I L +Q + R++
Sbjct: 455 MWLLYAQFEIRQKNL--PFARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 508
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 509 YEKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSY 562
Query: 662 YSTETKLGTSETATAVYWR 680
E + +E +Y R
Sbjct: 563 IDFEIEQEETERTRNLYRR 581
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 110 (43.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 67/289 (23%), Positives = 109/289 (37%)
Query: 399 VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458
+Y+ AL ++P +L+ + K E + + + +S YE+ A
Sbjct: 269 IYKYALDHLPKDRTQELFKAYT-------KHEKKYGDRAGIEDVIVSKRKYQYEQEVAAN 321
Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG-KLSDSVQLWLLRISVEIRCVTRNSFS 517
D Y+ L G D+ R+ + S ++ W I + I
Sbjct: 322 PTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELE 381
Query: 518 PSKAD-ILSIFELLKCI-LTKVSALESESLWLMALKFFMNQKHY--FDKLVEIALISVAK 573
A+ I++ C+ L LWL+ +F + K K + +A+ +
Sbjct: 382 AEDAERTRQIYKT--CLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPR 439
Query: 574 DGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGD 633
D L I+L IQ ++ R +Y++FL V + ELEN L GD
Sbjct: 440 D-------KLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLL---GD 489
Query: 634 KDSLVNARKLFESALAT--YDQNTSLWRDYYSTETKLGTSETATAVYWR 680
D AR +FE A+ D LW+ Y E LG +E A +Y R
Sbjct: 490 TD---RARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYER 535
Score = 77 (32.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 161 WFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219
W KY ++ Q++ R + + + + + +W+ A E N V AR L +
Sbjct: 79 WIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMK-NKQVNHARNLWDRAV 137
Query: 220 RVCPTSEELWVEYLRMELTYLNKLKARKV 248
+ P + W +Y ME N AR+V
Sbjct: 138 TIMPRVNQFWYKYTYMEEMLENVAGARQV 166
Score = 68 (29.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R +K +R + V WI A WE + + AR++ + L + LW++Y
Sbjct: 60 RKRKTFEDNLRKNRMVVSHWIKYAQWE-EQQQEIQRARSIWERALDNEHRNVTLWLKYAE 118
Query: 235 MEL 237
ME+
Sbjct: 119 MEM 121
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 101 (40.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 66/295 (22%), Positives = 117/295 (39%)
Query: 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451
++++A +Y+ AL ++ +LY KF +A +K+ D E + + Y
Sbjct: 265 EVERARFIYKFALDHIRKGRAEELYKKF----VAFEKQYG-DKE--GIEDAIVGKKRFEY 317
Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK-LCSGKLSDSVQLWLLRISVEIRC 510
E + L D YV L +G D R++ + + + + + W I + I
Sbjct: 318 EDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINY 377
Query: 511 VTRNSFSPSKAD-ILSIF-ELLKCIL-TKVSALESESLWLMALKFFMNQKHYFDKLVEIA 567
+ ++ E LK I TK S + +WL+A ++ + Q + L
Sbjct: 378 ALYEEIETKDVERTRDVYRECLKLIPHTKFSFAK---IWLLAAEYEIRQLN----LTGAR 430
Query: 568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN 627
I + G + I + ++ I + R++Y+RFL ++N E E +
Sbjct: 431 QI-LGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEIS 489
Query: 628 LASVGDKDSLVNARKLFESALA--TYDQNTSLWRDYYSTETKLGTSETATAVYWR 680
LA AR +FE A++ D LW+ Y E G E A+Y R
Sbjct: 490 LAETE------RARAIFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYER 538
Score = 87 (35.7 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 151 VMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209
+ R + +I++W KY ++ + + R + V + + + +W+ A +E + V
Sbjct: 71 IRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKF-VN 129
Query: 210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR + + + P ++LW +Y+ ME N AR++
Sbjct: 130 NARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQI 168
Score = 39 (18.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLM 421
+++++A +YE + P F Y KF M
Sbjct: 193 NEIERARSIYERFVLCHPKVSAFIRYAKFEM 223
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 94 (38.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 37/174 (21%), Positives = 76/174 (43%)
Query: 78 RRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXX 137
R+ E +L R + +K A I+ ++ LR R+ R E R
Sbjct: 16 RKDAELKLPRMTQVKNKTPAPIQITAE-QILREARE----RQEAEFRPPNQTITDSAELS 70
Query: 138 XGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIY 196
R + + + R + + ++W KY +F + K+ + V + + P+V +W Y
Sbjct: 71 DYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLW-Y 129
Query: 197 AAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLK-ARKV 248
+ L N+ AR +++ + C ++ W+ +++ EL Y N+++ AR +
Sbjct: 130 KFI-HMEEKLGNIAGARQILERWIH-CSPDQQAWLCFIKFELKY-NEIECARSI 180
Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 62/290 (21%), Positives = 107/290 (36%)
Query: 400 YEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC 459
Y+ AL +P +LY+KF +A +K+ D E + I YE
Sbjct: 241 YKFALDQIPKGRAENLYSKF----VAFEKQNG-DKE--GIEDAIIGKRRCQYEDEVRKNP 293
Query: 460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ---LWLLRISVEIRCVTRNSF 516
L D +V L +G D R++ + + Q W I + I
Sbjct: 294 LNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEM 353
Query: 517 SPSKADILSIFELLKCILTKV--SALESESLWLMALKFFMNQKHYFD--KLVEIALISVA 572
D+ S ++ + L + S +WL+A + + Q + +++ A+
Sbjct: 354 VTE--DVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAP 411
Query: 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG 632
KD + I + +Q I + R++Y+R+L ++ E E +LA
Sbjct: 412 KD-------KIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETE 464
Query: 633 DKDSLVNARKLFESALA--TYDQNTSLWRDYYSTETKLGTSETATAVYWR 680
R +FE A++ D LW+ Y E G E A+Y R
Sbjct: 465 ------RTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYER 508
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 126 (49.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 63/243 (25%), Positives = 106/243 (43%)
Query: 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503
++H V+++A + + ++Y+ + LG +D ARK+ + S Q WL
Sbjct: 122 VNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDW--SPDQQAWLCF 179
Query: 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFM-NQKHYFDK 562
I E+R N S+ SI+E + +L A S ++ KF M N + +
Sbjct: 180 IKFELRY---NEIERSR----SIYE--RFVLCHPKA----SSFIRYAKFEMKNSQVSLAR 226
Query: 563 LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLA-LPRPGLV-LYQN 620
+V I + KD E+ + + K+ +++AR +YK L +P+ LY+
Sbjct: 227 IVYERAIEMLKDVEEEAEMIFVAFAEFEELCKE-VERARFLYKYALDHIPKGRAEDLYKK 285
Query: 621 CIELENNLASV-GDKDSLVNARKL-FESALATYDQNTSLWRDYYSTETKLGTSETATAVY 678
+ E + G D++V RKL +E + N W DY S E LG + VY
Sbjct: 286 FVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVY 345
Query: 679 WRA 681
RA
Sbjct: 346 ERA 348
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 212 RALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
R ++ +R T+ ++WV Y E + + +AR V
Sbjct: 57 RKEFEDQIRGAKTNSQVWVRYADWEESQKDHDRARSV 93
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 106 (42.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 65/287 (22%), Positives = 112/287 (39%)
Query: 140 VARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAA 198
V R IY A+ +I LW KY E + R+ + + + I P+V W Y
Sbjct: 96 VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFW-YKY 154
Query: 199 AWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
+ + N+ R + + + P E+ W Y+ EL Y KAR + +K LV
Sbjct: 155 TYMEEMLGNIAGCRQVFERWMEWEP-EEQAWHSYINFELRYKEVDKARSIY---EKA-LV 209
Query: 259 RDHRDADEKRWIN----ENKGLFMPLDGEV-ENTDGSQPENMESQKSVDLF-----REQG 308
H + K WI E K ++ +V E E S+ F +++
Sbjct: 210 MVHPEV--KNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKE 267
Query: 309 LRVLQTIYSGAVEALPSSFNLRQRFFE--IVEATNLAQSDDMHDKILS----DMQRDFLV 362
++ IY A++ +P Q F+ V + D I+S + +
Sbjct: 268 FERVRVIYKYALDRIPKQ--QAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKA 325
Query: 363 DPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+P +D W L++ +S D ++ + +VYE A+ N+P
Sbjct: 326 NPHNYDAWFDYLRLVES---DADADTVR--------EVYERAIANIP 361
Score = 68 (29.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I L +Q + R++Y+++L + ELE L GD D +R +FE A
Sbjct: 452 IELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETIL---GDTD---RSRAIFELA 505
Query: 648 LAT--YDQNTSLWRDYYSTETKLGTSETATAVYWR 680
+ D LW+ Y E + + +Y R
Sbjct: 506 IGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKR 540
Score = 66 (28.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651
I++ +Q AR + P L++ IELE L D+ RKL+E L
Sbjct: 423 IRQKNLQNARRGLGTAIG-KCPKNKLFKGYIELELQLREF-DR-----CRKLYEKYLEFS 475
Query: 652 DQNTSLWRDYYSTETKLGTSETATAVY 678
+N + W + ET LG ++ + A++
Sbjct: 476 PENCTTWIKFAELETILGDTDRSRAIF 502
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 100 (40.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAA 199
AR ++ A+ I LW KY+E + +N + + + + P+V +W Y
Sbjct: 87 ARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLW-YKYV 145
Query: 200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
+ + N+T R + + L+ P E W+ Y+RME Y +AR +
Sbjct: 146 YMEEMLGNITGCRQVFERWLKWEP-DENCWMSYIRMERRYHENERARGI 193
Score = 98 (39.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 80/361 (22%), Positives = 144/361 (39%)
Query: 161 WFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219
W +Y ++ Q++ R + V + + +W+ E N N+ AR L +
Sbjct: 73 WMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMK-NRNINHARNLFDRAV 131
Query: 220 RVCPTSEELWVEYLRME-----LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
P ++LW +Y+ ME +T ++ R + D+ + R E+R+ +EN+
Sbjct: 132 TQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIRM--ERRY-HENE 188
Query: 275 GLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV-LQTIYSGAVEALPSSFNLRQRF 333
G E PE + E G ++ +Y A++AL F L +RF
Sbjct: 189 RA----RGIYERFVVVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDALGQEF-LNERF 243
Query: 334 FEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393
F + Q + + + DF+ K + L + + T + G + + +
Sbjct: 244 FIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSME-LYK-EYTHFEKQFGDHLGVESTVL 301
Query: 394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453
K YE+ LK+ P +D Y +L D++ K EE+ ++ + E Y + V E
Sbjct: 302 DKRRLQYEKLLKDSP----YD-YDTWL-DLL--KLEESA-GDINTIRETYEKAIAKVPEV 352
Query: 454 AEAMGCLTEDIAHRYVTLY--LQLGKLDEARKL---AAKLCSGKLSDSVQLWLLRISVEI 508
E L+ + + +D ARK+ A KL K +LWL+ E+
Sbjct: 353 VEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFEL 412
Query: 509 R 509
R
Sbjct: 413 R 413
Score = 73 (30.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 597 IQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655
I AR+ R L + P+P L ++ IE E+ + D+ R L+E + YD
Sbjct: 417 IDVARKTLGRALGMCPKPKL--FRGYIEFEDAIKQF-DR-----CRILYEKWIL-YDPEA 467
Query: 656 SL-WRDYYSTETKLGTSETATAVY 678
W Y + ETKLG S+ A A+Y
Sbjct: 468 CAPWLGYAALETKLGDSDRARALY 491
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 103 (41.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 42/181 (23%), Positives = 74/181 (40%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 32 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 85
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 86 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 145
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 146 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVERART 203
Query: 248 V 248
+
Sbjct: 204 I 204
Score = 70 (29.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 617 LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATA 676
L++ IELE L D+ RKL+E L +N + W + ET LG E A A
Sbjct: 447 LFKGYIELELQLREF-DR-----CRKLYEKFLEFGPENCTSWIKFAELETILGDIERARA 500
Query: 677 VY 678
+Y
Sbjct: 501 IY 502
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 103 (41.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 42/181 (23%), Positives = 74/181 (40%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 32 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 85
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 86 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 145
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 146 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVERART 203
Query: 248 V 248
+
Sbjct: 204 I 204
Score = 70 (29.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 617 LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATA 676
L++ IELE L D+ RKL+E L +N + W + ET LG E A A
Sbjct: 447 LFKGYIELELQLREF-DR-----CRKLYEKFLEFGPENCTSWIKFAELETILGDIERARA 500
Query: 677 VY 678
+Y
Sbjct: 501 IY 502
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 89 (36.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 26/103 (25%), Positives = 45/103 (43%)
Query: 147 YRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN 205
Y + R + ++ KY + +K+ R + V + + ++P VWI A E N
Sbjct: 64 YESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMK-N 122
Query: 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
N+ AR + + + P +LW +Y ME N AR +
Sbjct: 123 KNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAI 165
Score = 81 (33.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 59/301 (19%), Positives = 120/301 (39%)
Query: 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451
++++A +Y+ A+ +VP S DL+ F E + + + + Y
Sbjct: 261 EIERARVIYKYAIDHVPKSRAKDLFDTFT-------NFEKQHGDRIGIEDVVLGKKRFQY 313
Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--SDSVQLWLLRISVEIR 509
E+ DI Y+ + G++++ R++ + G L ++ + W I + I
Sbjct: 314 EEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSI-GNLPPTNEKKHWKRYIYLWIN 372
Query: 510 -CVTRNSFSPSKADILSIF-ELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA 567
+ S S++ E +K I K + +W++ F + Q + DK A
Sbjct: 373 YALFEELISKDMERARSVYSECIKLIPHKEFSFSK--IWILYANFEIRQLN-LDK----A 425
Query: 568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN 627
+ + G + I+L I+ + R +Y+++L + + +LE
Sbjct: 426 RLIYGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETE 485
Query: 628 LASVGDKDSLVNARKLFESALA--TYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL 685
L V AR +FE A+ D+ +W+D+ +E +L + +Y RK L
Sbjct: 486 LGET------VRARAIFELAIQQPNLDRPEVVWKDFIDSEIQLKQFDFVKQLY---RKLL 536
Query: 686 K 686
+
Sbjct: 537 E 537
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 697 685 0.00080 121 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 627 (67 KB)
Total size of DFA: 364 KB (2180 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.62u 0.11s 60.73t Elapsed: 00:00:03
Total cpu time: 60.63u 0.11s 60.74t Elapsed: 00:00:03
Start: Mon May 20 20:07:21 2013 End: Mon May 20 20:07:24 2013