Query 005434
Match_columns 697
No_of_seqs 310 out of 1615
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 23:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2396 HAT (Half-A-TPR) repea 100.0 1.2E-74 2.6E-79 589.8 52.4 559 42-692 1-567 (568)
2 KOG1915 Cell cycle control pro 100.0 5.4E-65 1.2E-69 513.1 48.7 502 41-686 14-538 (677)
3 KOG2047 mRNA splicing factor [ 100.0 4.3E-54 9.3E-59 448.3 40.4 504 78-678 13-717 (835)
4 KOG1915 Cell cycle control pro 100.0 1.7E-47 3.7E-52 386.5 49.6 503 68-681 83-622 (677)
5 KOG0495 HAT repeat protein [RN 100.0 1.2E-37 2.5E-42 325.9 48.5 471 57-688 250-786 (913)
6 COG5191 Uncharacterized conser 100.0 1.6E-41 3.5E-46 327.0 13.9 196 42-247 1-197 (435)
7 KOG0495 HAT repeat protein [RN 100.0 1.2E-31 2.5E-36 281.1 49.4 527 52-687 313-883 (913)
8 KOG2047 mRNA splicing factor [ 100.0 3.6E-31 7.8E-36 277.2 42.2 477 145-687 14-618 (835)
9 KOG1914 mRNA cleavage and poly 100.0 6.8E-26 1.5E-30 234.2 39.8 448 82-686 10-503 (656)
10 KOG1914 mRNA cleavage and poly 99.9 2E-21 4.3E-26 201.3 41.2 415 148-684 10-464 (656)
11 PF08640 U3_assoc_6: U3 small 99.9 1.9E-22 4.2E-27 163.1 8.3 83 50-143 1-83 (83)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-17 2.4E-22 200.8 51.7 451 140-686 413-868 (899)
13 COG5107 RNA14 Pre-mRNA 3'-end 99.9 2.1E-18 4.6E-23 175.0 34.7 467 83-696 33-546 (660)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 7.5E-17 1.6E-21 193.7 53.7 448 140-682 447-898 (899)
15 KOG1070 rRNA processing protei 99.8 1E-17 2.2E-22 189.4 26.3 247 398-686 1445-1702(1710)
16 KOG1070 rRNA processing protei 99.8 3.9E-17 8.5E-22 184.8 23.3 212 448-684 1444-1663(1710)
17 COG5107 RNA14 Pre-mRNA 3'-end 99.8 1.2E-15 2.5E-20 155.3 31.5 406 151-686 35-497 (660)
18 PRK11447 cellulose synthase su 99.8 1.3E-13 2.7E-18 169.3 55.1 486 140-687 78-703 (1157)
19 KOG1258 mRNA processing protei 99.7 6.4E-14 1.4E-18 149.3 42.8 440 139-685 60-545 (577)
20 TIGR00990 3a0801s09 mitochondr 99.7 7.1E-13 1.5E-17 152.7 47.7 220 442-686 345-573 (615)
21 PRK11447 cellulose synthase su 99.7 9E-13 2E-17 161.8 51.2 400 173-685 285-741 (1157)
22 KOG0128 RNA-binding protein SA 99.7 8E-13 1.7E-17 144.4 38.3 393 149-682 138-561 (881)
23 PRK10049 pgaA outer membrane p 99.6 1.1E-11 2.4E-16 145.8 46.3 424 154-689 11-461 (765)
24 KOG4626 O-linked N-acetylgluco 99.6 3.2E-13 6.8E-18 142.6 29.3 378 149-655 107-490 (966)
25 KOG2396 HAT (Half-A-TPR) repea 99.6 1.2E-11 2.6E-16 128.6 38.7 441 151-689 44-530 (568)
26 KOG1258 mRNA processing protei 99.6 7E-13 1.5E-17 141.5 30.6 429 147-671 21-491 (577)
27 PRK15174 Vi polysaccharide exp 99.6 1.3E-11 2.7E-16 142.4 42.5 352 173-664 58-419 (656)
28 PRK10049 pgaA outer membrane p 99.6 3.8E-11 8.3E-16 141.2 46.5 403 141-664 32-470 (765)
29 PRK15174 Vi polysaccharide exp 99.6 2.7E-11 6E-16 139.6 40.0 288 141-538 59-349 (656)
30 KOG4626 O-linked N-acetylgluco 99.5 1.9E-11 4.1E-16 129.4 31.0 358 139-619 131-494 (966)
31 TIGR00990 3a0801s09 mitochondr 99.5 3.3E-10 7.2E-15 130.6 44.7 385 173-688 143-541 (615)
32 KOG0128 RNA-binding protein SA 99.5 4.2E-11 9.2E-16 131.2 29.4 403 151-689 106-531 (881)
33 PF05843 Suf: Suppressor of fo 99.4 5.1E-13 1.1E-17 137.5 12.1 141 544-696 2-151 (280)
34 KOG2002 TPR-containing nuclear 99.4 3.2E-09 6.9E-14 118.6 41.4 464 143-686 218-711 (1018)
35 PF13429 TPR_15: Tetratricopep 99.4 8.4E-13 1.8E-17 136.8 11.7 269 359-685 5-278 (280)
36 PRK09782 bacteriophage N4 rece 99.4 1.7E-08 3.8E-13 119.6 48.0 536 76-689 126-745 (987)
37 KOG2002 TPR-containing nuclear 99.4 2.5E-08 5.3E-13 111.7 44.0 465 139-688 109-597 (1018)
38 PLN03218 maturation of RBCL 1; 99.4 4.1E-08 8.8E-13 117.3 49.1 90 141-235 354-446 (1060)
39 PRK09782 bacteriophage N4 rece 99.4 8.1E-08 1.8E-12 114.0 49.0 204 141-402 61-272 (987)
40 PLN03218 maturation of RBCL 1; 99.3 1.8E-07 3.8E-12 112.0 49.3 383 140-650 386-783 (1060)
41 PLN03081 pentatricopeptide (PP 99.3 5.8E-08 1.2E-12 113.8 43.9 439 140-684 103-557 (697)
42 PF05843 Suf: Suppressor of fo 99.3 5E-11 1.1E-15 122.7 16.0 133 412-573 3-139 (280)
43 PF13429 TPR_15: Tetratricopep 99.3 1.5E-11 3.3E-16 127.4 12.1 262 159-535 9-276 (280)
44 PRK11788 tetratricopeptide rep 99.3 1.1E-08 2.3E-13 111.3 34.6 257 140-500 51-319 (389)
45 KOG0547 Translocase of outer m 99.3 3.4E-08 7.3E-13 102.8 33.6 220 442-685 340-567 (606)
46 PRK11788 tetratricopeptide rep 99.2 2.4E-08 5.2E-13 108.6 32.3 286 346-684 51-347 (389)
47 PLN03077 Protein ECB2; Provisi 99.1 1.2E-06 2.5E-11 105.4 42.5 442 138-683 267-719 (857)
48 TIGR00540 hemY_coli hemY prote 99.1 1.8E-07 4E-12 102.2 32.5 281 140-537 100-400 (409)
49 PRK14574 hmsH outer membrane p 99.1 8.2E-06 1.8E-10 95.3 46.9 438 141-688 51-517 (822)
50 PLN03077 Protein ECB2; Provisi 99.1 3E-06 6.4E-11 101.9 44.9 215 445-688 472-690 (857)
51 PRK14574 hmsH outer membrane p 99.1 3.7E-06 8.1E-11 98.1 43.3 123 558-688 344-483 (822)
52 PLN03081 pentatricopeptide (PP 99.0 1.1E-06 2.4E-11 103.1 37.7 424 160-687 89-526 (697)
53 TIGR00540 hemY_coli hemY prote 99.0 1E-06 2.2E-11 96.4 33.6 283 345-685 99-400 (409)
54 KOG0547 Translocase of outer m 99.0 2.6E-05 5.7E-10 81.8 39.8 200 445-666 377-582 (606)
55 PRK10747 putative protoheme IX 99.0 2.2E-06 4.8E-11 93.3 33.4 260 165-537 125-391 (398)
56 PRK10747 putative protoheme IX 98.9 3.4E-06 7.5E-11 91.8 32.8 284 346-687 100-393 (398)
57 PRK12370 invasion protein regu 98.9 1.2E-06 2.6E-11 99.6 29.2 256 390-683 274-534 (553)
58 COG3063 PilF Tfp pilus assembl 98.9 7.7E-07 1.7E-11 84.9 22.3 192 471-689 44-241 (250)
59 KOG2076 RNA polymerase III tra 98.9 0.00019 4.1E-09 80.8 44.3 275 139-489 222-510 (895)
60 TIGR02521 type_IV_pilW type IV 98.9 1.2E-06 2.7E-11 86.7 25.0 200 462-684 31-232 (234)
61 KOG1155 Anaphase-promoting com 98.8 6.6E-05 1.4E-09 78.4 37.2 184 440-682 342-534 (559)
62 KOG2076 RNA polymerase III tra 98.8 4.9E-06 1.1E-10 93.2 30.9 288 345-680 154-508 (895)
63 PF08424 NRDE-2: NRDE-2, neces 98.8 4.6E-08 9.9E-13 102.7 13.9 131 74-224 1-134 (321)
64 TIGR02521 type_IV_pilW type IV 98.7 4.8E-06 1E-10 82.5 22.9 187 442-651 45-233 (234)
65 KOG1126 DNA-binding cell divis 98.6 1.3E-05 2.8E-10 87.3 24.8 262 299-616 359-626 (638)
66 KOG1173 Anaphase-promoting com 98.6 2.9E-05 6.2E-10 83.0 26.6 257 141-496 261-522 (611)
67 PRK11189 lipoprotein NlpI; Pro 98.6 1.4E-05 3E-10 83.3 24.1 58 451-509 225-283 (296)
68 KOG1156 N-terminal acetyltrans 98.6 0.0023 4.9E-08 69.9 40.5 390 173-679 23-463 (700)
69 KOG4162 Predicted calmodulin-b 98.5 0.0033 7.2E-08 70.0 45.0 441 138-692 303-793 (799)
70 KOG1155 Anaphase-promoting com 98.5 0.0024 5.3E-08 67.1 38.8 252 305-608 274-534 (559)
71 PRK12370 invasion protein regu 98.5 2.7E-05 5.8E-10 88.6 25.5 218 441-685 274-503 (553)
72 PRK11189 lipoprotein NlpI; Pro 98.4 2.8E-05 6E-10 81.1 20.7 233 391-666 40-282 (296)
73 PF08311 Mad3_BUB1_I: Mad3/BUB 98.4 2.3E-06 5E-11 76.5 10.0 111 75-219 2-126 (126)
74 PF08424 NRDE-2: NRDE-2, neces 98.4 1.1E-05 2.3E-10 84.9 16.6 150 448-610 5-183 (321)
75 KOG1126 DNA-binding cell divis 98.3 0.00044 9.4E-09 75.7 26.7 257 174-511 336-605 (638)
76 KOG1125 TPR repeat-containing 98.3 2.3E-05 5E-10 84.1 15.7 221 140-489 301-525 (579)
77 COG3063 PilF Tfp pilus assembl 98.2 0.00046 9.9E-09 66.3 22.2 191 441-654 48-240 (250)
78 PRK15179 Vi polysaccharide bio 98.2 9E-05 2E-09 85.1 20.1 144 353-538 75-219 (694)
79 PRK10370 formate-dependent nit 98.1 0.00011 2.4E-09 71.5 14.8 97 140-236 55-154 (198)
80 PLN02789 farnesyltranstransfer 98.0 0.004 8.6E-08 65.3 27.2 193 140-409 53-253 (320)
81 KOG1173 Anaphase-promoting com 98.0 0.0037 8E-08 67.4 26.1 268 309-663 260-534 (611)
82 PLN02789 farnesyltranstransfer 98.0 0.0083 1.8E-07 62.9 28.7 173 347-553 54-227 (320)
83 KOG3060 Uncharacterized conser 98.0 0.0036 7.8E-08 61.1 22.8 121 310-461 103-224 (289)
84 KOG4162 Predicted calmodulin-b 98.0 0.056 1.2E-06 60.6 40.0 83 140-222 339-424 (799)
85 PRK15359 type III secretion sy 98.0 0.00025 5.4E-09 65.3 14.5 98 390-506 37-135 (144)
86 KOG1174 Anaphase-promoting com 97.9 0.008 1.7E-07 62.4 26.0 295 145-508 219-516 (564)
87 PF12569 NARP1: NMDA receptor- 97.9 0.0018 3.8E-08 72.0 23.4 226 442-679 18-286 (517)
88 KOG0624 dsRNA-activated protei 97.9 0.021 4.6E-07 58.0 27.6 311 140-538 54-372 (504)
89 KOG1174 Anaphase-promoting com 97.9 0.034 7.4E-07 57.9 29.5 287 346-670 214-520 (564)
90 PRK15359 type III secretion sy 97.9 0.00024 5.2E-09 65.4 13.2 95 140-235 40-135 (144)
91 COG5191 Uncharacterized conser 97.9 1.8E-05 3.9E-10 78.4 5.6 84 580-668 106-189 (435)
92 KOG1156 N-terminal acetyltrans 97.9 0.079 1.7E-06 58.4 37.9 100 141-241 58-158 (700)
93 smart00777 Mad3_BUB1_I Mad3/BU 97.8 0.00017 3.6E-09 63.7 10.6 109 76-218 3-125 (125)
94 PRK14720 transcript cleavage f 97.8 0.0063 1.4E-07 71.1 26.0 144 324-489 28-176 (906)
95 cd05804 StaR_like StaR_like; a 97.8 0.07 1.5E-06 57.0 33.0 114 349-494 99-217 (355)
96 TIGR02552 LcrH_SycD type III s 97.8 0.00031 6.7E-09 63.7 12.2 90 145-235 4-94 (135)
97 KOG3060 Uncharacterized conser 97.8 0.0047 1E-07 60.3 20.2 155 345-538 67-222 (289)
98 PRK10370 formate-dependent nit 97.8 0.00051 1.1E-08 66.9 13.9 120 347-495 56-176 (198)
99 KOG1129 TPR repeat-containing 97.8 0.0012 2.7E-08 66.2 16.4 220 442-686 237-460 (478)
100 TIGR02552 LcrH_SycD type III s 97.7 0.0012 2.5E-08 59.9 14.7 92 140-232 33-125 (135)
101 KOG1840 Kinesin light chain [C 97.7 0.013 2.9E-07 64.5 24.2 231 390-684 212-479 (508)
102 PF02184 HAT: HAT (Half-A-TPR) 97.6 8.7E-05 1.9E-09 47.6 3.7 31 636-667 2-32 (32)
103 TIGR03302 OM_YfiO outer membra 97.6 0.0066 1.4E-07 60.8 19.2 170 140-362 49-235 (235)
104 TIGR03302 OM_YfiO outer membra 97.6 0.007 1.5E-07 60.6 19.1 181 302-494 42-234 (235)
105 PF12569 NARP1: NMDA receptor- 97.5 0.047 1E-06 60.9 26.7 260 391-685 18-328 (517)
106 PRK15179 Vi polysaccharide bio 97.5 0.0044 9.6E-08 71.5 19.3 146 323-503 82-228 (694)
107 KOG1129 TPR repeat-containing 97.5 0.0087 1.9E-07 60.3 18.5 222 170-495 235-461 (478)
108 cd05804 StaR_like StaR_like; a 97.5 0.013 2.8E-07 62.7 21.8 202 458-683 2-214 (355)
109 PF14559 TPR_19: Tetratricopep 97.5 0.00042 9E-09 54.5 7.4 61 173-234 7-67 (68)
110 PF14559 TPR_19: Tetratricopep 97.5 0.00045 9.8E-09 54.3 7.3 64 441-505 4-67 (68)
111 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.0017 3.6E-08 58.1 11.6 114 480-608 3-126 (126)
112 KOG2003 TPR repeat-containing 97.5 0.11 2.5E-06 54.5 26.0 201 390-629 503-708 (840)
113 smart00386 HAT HAT (Half-A-TPR 97.4 0.00022 4.7E-09 46.9 4.3 32 206-237 1-32 (33)
114 smart00386 HAT HAT (Half-A-TPR 97.4 0.0002 4.4E-09 47.1 4.1 31 636-666 2-32 (33)
115 PLN03088 SGT1, suppressor of 97.4 0.002 4.4E-08 68.8 13.3 92 140-232 18-110 (356)
116 KOG1128 Uncharacterized conser 97.4 0.072 1.6E-06 59.5 24.7 255 310-663 415-675 (777)
117 KOG1125 TPR repeat-containing 97.3 0.011 2.4E-07 64.0 17.7 206 297-539 289-496 (579)
118 KOG1840 Kinesin light chain [C 97.3 0.039 8.5E-07 60.9 22.4 198 390-609 254-478 (508)
119 KOG2003 TPR repeat-containing 97.3 0.12 2.6E-06 54.4 23.8 165 310-508 541-705 (840)
120 COG4783 Putative Zn-dependent 97.2 0.011 2.3E-07 63.1 16.0 103 139-242 321-424 (484)
121 cd00189 TPR Tetratricopeptide 97.2 0.0049 1.1E-07 50.4 11.3 90 591-686 10-99 (100)
122 COG2956 Predicted N-acetylgluc 97.2 0.13 2.7E-06 52.3 22.5 219 444-688 51-282 (389)
123 PF02184 HAT: HAT (Half-A-TPR) 97.2 0.0005 1.1E-08 44.2 3.6 30 207-237 2-31 (32)
124 PF13432 TPR_16: Tetratricopep 97.2 0.001 2.2E-08 51.7 6.3 59 167-226 6-65 (65)
125 PF13414 TPR_11: TPR repeat; P 97.2 0.0018 3.9E-08 51.0 7.5 66 157-223 2-69 (69)
126 cd00189 TPR Tetratricopeptide 97.2 0.0032 6.9E-08 51.6 9.5 84 140-224 16-100 (100)
127 PF13428 TPR_14: Tetratricopep 97.1 0.00096 2.1E-08 47.5 5.0 43 191-234 1-43 (44)
128 PLN03088 SGT1, suppressor of 97.1 0.005 1.1E-07 65.8 12.7 98 442-550 16-113 (356)
129 KOG1128 Uncharacterized conser 97.1 0.017 3.7E-07 64.2 16.6 203 442-685 412-617 (777)
130 PRK15363 pathogenicity island 97.1 0.0045 9.8E-08 56.7 10.2 85 140-225 51-136 (157)
131 COG2956 Predicted N-acetylgluc 97.1 0.42 9.2E-06 48.7 33.0 195 391-652 155-353 (389)
132 PF13432 TPR_16: Tetratricopep 97.0 0.0022 4.7E-08 49.9 6.5 56 441-497 10-65 (65)
133 KOG1127 TPR repeat-containing 97.0 1.1 2.5E-05 52.0 30.5 185 174-406 475-659 (1238)
134 PRK14720 transcript cleavage f 97.0 0.022 4.9E-07 66.6 16.9 165 458-667 27-201 (906)
135 PF13371 TPR_9: Tetratricopept 96.9 0.0025 5.5E-08 50.8 6.5 55 173-228 11-65 (73)
136 PF13428 TPR_14: Tetratricopep 96.9 0.0016 3.5E-08 46.3 4.6 43 462-505 1-43 (44)
137 KOG1127 TPR repeat-containing 96.8 1.6 3.4E-05 50.9 28.4 148 308-489 507-657 (1238)
138 PRK11906 transcriptional regul 96.7 0.29 6.3E-06 52.7 21.4 138 390-549 271-418 (458)
139 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.035 7.5E-07 48.5 12.7 93 591-689 12-110 (119)
140 PF09976 TPR_21: Tetratricopep 96.7 0.068 1.5E-06 49.1 14.7 116 346-489 27-145 (145)
141 COG4235 Cytochrome c biogenesi 96.5 0.071 1.5E-06 53.9 14.0 120 348-496 140-260 (287)
142 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.038 8.3E-07 48.2 11.1 86 140-226 18-110 (119)
143 PF13414 TPR_11: TPR repeat; P 96.3 0.025 5.4E-07 44.3 8.3 68 461-538 2-69 (69)
144 smart00777 Mad3_BUB1_I Mad3/BU 96.3 0.04 8.8E-07 48.7 10.0 55 615-681 69-125 (125)
145 COG4783 Putative Zn-dependent 96.3 0.22 4.8E-06 53.4 17.0 143 442-618 320-462 (484)
146 COG4235 Cytochrome c biogenesi 96.3 0.12 2.6E-06 52.3 14.3 97 443-548 137-233 (287)
147 PRK10803 tol-pal system protei 96.2 0.062 1.4E-06 54.6 12.2 92 592-689 154-251 (263)
148 PF09295 ChAPs: ChAPs (Chs5p-A 96.1 0.057 1.2E-06 57.9 12.3 101 391-512 183-283 (395)
149 PF13371 TPR_9: Tetratricopept 96.1 0.021 4.5E-07 45.3 6.9 57 442-499 9-65 (73)
150 PRK15363 pathogenicity island 96.1 0.094 2E-06 48.2 11.7 88 592-685 46-133 (157)
151 COG5010 TadD Flp pilus assembl 96.1 1.1 2.4E-05 44.5 19.5 52 459-511 97-148 (257)
152 PF09295 ChAPs: ChAPs (Chs5p-A 96.0 0.15 3.3E-06 54.7 14.7 121 329-486 171-292 (395)
153 KOG0553 TPR repeat-containing 95.8 0.11 2.3E-06 52.4 11.6 89 441-540 94-182 (304)
154 KOG0553 TPR repeat-containing 95.7 0.11 2.5E-06 52.2 11.3 93 139-232 96-189 (304)
155 COG5010 TadD Flp pilus assembl 95.7 0.39 8.6E-06 47.5 14.7 167 453-645 58-226 (257)
156 CHL00033 ycf3 photosystem I as 95.7 0.37 8.1E-06 45.3 14.5 79 158-237 35-117 (168)
157 PF13431 TPR_17: Tetratricopep 95.7 0.015 3.2E-07 38.7 3.4 33 450-482 1-33 (34)
158 PF12895 Apc3: Anaphase-promot 95.5 0.036 7.8E-07 45.5 6.0 77 140-218 5-84 (84)
159 PF04733 Coatomer_E: Coatomer 95.5 0.23 4.9E-06 51.4 13.2 146 530-685 118-266 (290)
160 PRK10803 tol-pal system protei 95.4 0.16 3.4E-06 51.7 11.2 86 140-226 159-251 (263)
161 PRK10153 DNA-binding transcrip 95.2 1.6 3.4E-05 49.1 19.4 151 356-540 329-486 (517)
162 PF12895 Apc3: Anaphase-promot 95.1 0.077 1.7E-06 43.5 6.9 80 442-533 3-84 (84)
163 PF13431 TPR_17: Tetratricopep 95.0 0.03 6.5E-07 37.2 3.3 33 179-212 1-33 (34)
164 KOG0550 Molecular chaperone (D 94.8 4.8 0.0001 42.6 19.8 128 391-537 217-351 (486)
165 KOG0548 Molecular co-chaperone 94.7 8.1 0.00018 42.3 34.2 96 140-236 18-114 (539)
166 KOG0624 dsRNA-activated protei 94.6 6.5 0.00014 40.6 28.2 205 301-538 46-254 (504)
167 PF14938 SNAP: Soluble NSF att 94.6 2 4.4E-05 44.3 17.2 124 523-652 90-227 (282)
168 KOG3617 WD40 and TPR repeat-co 94.5 11 0.00024 43.3 23.1 139 543-687 912-1118(1416)
169 KOG3081 Vesicle coat complex C 94.4 3.5 7.6E-05 41.1 17.0 108 583-696 175-282 (299)
170 PF09976 TPR_21: Tetratricopep 94.1 1.5 3.4E-05 40.0 13.6 118 391-534 25-145 (145)
171 PRK10153 DNA-binding transcrip 94.0 3.1 6.7E-05 46.8 18.2 152 321-497 331-487 (517)
172 PRK02603 photosystem I assembl 94.0 1.6 3.6E-05 41.1 14.1 85 140-225 51-153 (172)
173 PRK02603 photosystem I assembl 93.9 1.1 2.3E-05 42.5 12.5 86 364-477 35-121 (172)
174 CHL00033 ycf3 photosystem I as 93.6 1 2.3E-05 42.3 11.9 91 591-687 45-152 (168)
175 PF12688 TPR_5: Tetratrico pep 93.5 1 2.3E-05 39.7 10.8 83 441-534 14-102 (120)
176 PF13525 YfiO: Outer membrane 93.3 7.4 0.00016 37.9 17.6 130 346-499 21-177 (203)
177 PF07719 TPR_2: Tetratricopept 93.3 0.21 4.6E-06 32.6 4.8 34 191-225 1-34 (34)
178 PRK11906 transcriptional regul 93.3 8.7 0.00019 41.7 19.0 151 323-495 244-404 (458)
179 PF04733 Coatomer_E: Coatomer 93.1 1.9 4.1E-05 44.6 13.6 104 390-512 144-250 (290)
180 COG3071 HemY Uncharacterized e 93.0 14 0.0003 39.0 29.9 254 174-535 135-389 (400)
181 KOG2053 Mitochondrial inherita 92.5 26 0.00056 40.9 26.9 122 347-501 26-149 (932)
182 PF13525 YfiO: Outer membrane 92.5 5 0.00011 39.1 15.1 150 442-617 19-177 (203)
183 COG1729 Uncharacterized protei 92.3 1.4 3.1E-05 44.1 10.8 35 461-496 214-248 (262)
184 PRK15331 chaperone protein Sic 92.1 0.95 2E-05 42.0 8.7 83 140-224 53-136 (165)
185 KOG3785 Uncharacterized conser 91.8 12 0.00026 38.8 16.7 64 166-232 31-97 (557)
186 KOG2376 Signal recognition par 91.3 28 0.0006 38.8 24.5 45 443-490 94-138 (652)
187 PF14938 SNAP: Soluble NSF att 91.0 6.2 0.00013 40.6 14.7 90 591-686 124-227 (282)
188 KOG0543 FKBP-type peptidyl-pro 90.8 5.8 0.00013 42.0 13.9 124 390-538 221-357 (397)
189 KOG2053 Mitochondrial inherita 90.7 40 0.00086 39.5 25.0 167 309-505 93-265 (932)
190 KOG0550 Molecular chaperone (D 90.3 28 0.00061 37.1 18.3 173 468-663 175-362 (486)
191 PLN03098 LPA1 LOW PSII ACCUMUL 90.1 1.2 2.7E-05 48.0 8.4 69 153-222 70-142 (453)
192 PF13512 TPR_18: Tetratricopep 90.1 1.1 2.4E-05 40.5 7.0 53 173-228 26-83 (142)
193 PRK15331 chaperone protein Sic 90.0 3.4 7.4E-05 38.4 10.2 85 593-683 49-133 (165)
194 PF07719 TPR_2: Tetratricopept 90.0 0.68 1.5E-05 30.1 4.3 34 462-496 1-34 (34)
195 KOG3824 Huntingtin interacting 89.9 0.66 1.4E-05 46.8 5.9 52 636-687 131-182 (472)
196 PF12688 TPR_5: Tetratrico pep 89.8 6 0.00013 34.9 11.3 85 390-489 14-102 (120)
197 PRK10866 outer membrane biogen 89.4 11 0.00023 38.0 14.4 91 591-689 42-158 (243)
198 COG1729 Uncharacterized protei 89.4 3.6 7.8E-05 41.3 10.6 89 593-689 153-249 (262)
199 KOG0548 Molecular co-chaperone 89.3 39 0.00084 37.3 28.1 133 390-540 311-459 (539)
200 KOG0543 FKBP-type peptidyl-pro 88.4 8.2 0.00018 40.9 12.9 100 140-240 224-339 (397)
201 PRK10866 outer membrane biogen 87.4 34 0.00074 34.3 18.9 151 442-616 46-210 (243)
202 PF06552 TOM20_plant: Plant sp 87.0 7.3 0.00016 36.7 10.3 94 139-233 6-120 (186)
203 PLN03098 LPA1 LOW PSII ACCUMUL 86.5 3.8 8.2E-05 44.3 9.3 48 442-489 89-139 (453)
204 KOG4555 TPR repeat-containing 86.4 8.3 0.00018 34.3 9.6 85 593-683 55-143 (175)
205 PF13512 TPR_18: Tetratricopep 86.3 12 0.00026 33.9 11.1 90 592-689 21-133 (142)
206 COG3071 HemY Uncharacterized e 85.5 54 0.0012 34.8 33.1 286 346-687 100-393 (400)
207 PF00515 TPR_1: Tetratricopept 85.1 2.3 5.1E-05 27.6 4.7 33 191-224 1-33 (34)
208 PF03704 BTAD: Bacterial trans 85.0 4.5 9.8E-05 36.8 8.2 59 162-221 66-125 (146)
209 KOG2376 Signal recognition par 84.2 77 0.0017 35.5 36.7 102 584-691 379-494 (652)
210 PF13174 TPR_6: Tetratricopept 82.9 1.9 4.1E-05 27.6 3.4 31 465-496 3-33 (33)
211 KOG3824 Huntingtin interacting 81.7 2.9 6.3E-05 42.4 5.6 60 441-501 129-188 (472)
212 PF13181 TPR_8: Tetratricopept 81.2 3.1 6.6E-05 27.0 4.0 32 192-224 2-33 (34)
213 COG4105 ComL DNA uptake lipopr 80.2 50 0.0011 33.1 13.5 79 158-237 34-117 (254)
214 PF00515 TPR_1: Tetratricopept 78.8 4.4 9.6E-05 26.3 4.2 33 462-495 1-33 (34)
215 KOG3617 WD40 and TPR repeat-co 78.1 50 0.0011 38.4 14.1 82 584-685 861-942 (1416)
216 PF03704 BTAD: Bacterial trans 77.6 12 0.00025 34.0 8.1 50 636-685 77-126 (146)
217 KOG4234 TPR repeat-containing 77.5 61 0.0013 31.2 12.5 91 390-496 108-201 (271)
218 COG4785 NlpI Lipoprotein NlpI, 76.8 78 0.0017 31.0 14.4 47 365-424 238-284 (297)
219 PF10300 DUF3808: Protein of u 76.3 32 0.00069 38.3 12.4 118 345-488 248-373 (468)
220 KOG4234 TPR repeat-containing 75.4 25 0.00054 33.8 9.3 89 441-540 108-201 (271)
221 PF06552 TOM20_plant: Plant sp 75.0 30 0.00064 32.8 9.7 87 392-489 6-100 (186)
222 PF13424 TPR_12: Tetratricopep 74.7 6.9 0.00015 31.1 5.1 65 461-535 4-74 (78)
223 PF13174 TPR_6: Tetratricopept 74.7 5.4 0.00012 25.4 3.7 22 204-225 12-33 (33)
224 PF15297 CKAP2_C: Cytoskeleton 74.7 14 0.00031 38.5 8.3 66 343-421 116-186 (353)
225 PF13181 TPR_8: Tetratricopept 74.1 5.5 0.00012 25.7 3.6 31 463-494 2-32 (34)
226 KOG0890 Protein kinase of the 73.2 3.2E+02 0.0069 36.3 21.2 64 156-222 1668-1732(2382)
227 PF13424 TPR_12: Tetratricopep 73.1 4 8.7E-05 32.5 3.3 66 155-221 2-75 (78)
228 KOG1585 Protein required for f 72.4 1.1E+02 0.0024 30.6 17.3 36 611-652 186-221 (308)
229 KOG3785 Uncharacterized conser 69.6 1.5E+02 0.0033 31.1 17.8 177 393-615 38-219 (557)
230 smart00028 TPR Tetratricopepti 68.8 8.2 0.00018 23.3 3.6 32 192-224 2-33 (34)
231 PRK04841 transcriptional regul 68.3 2.8E+02 0.0061 33.7 28.7 266 390-688 465-764 (903)
232 COG4105 ComL DNA uptake lipopr 68.1 1.4E+02 0.003 30.0 21.3 183 442-652 48-234 (254)
233 PF04184 ST7: ST7 protein; In 65.0 1.2E+02 0.0025 33.6 12.8 44 177-223 188-231 (539)
234 TIGR02996 rpt_mate_G_obs repea 64.6 16 0.00036 25.3 4.2 33 450-482 4-36 (42)
235 KOG4642 Chaperone-dependent E3 63.8 47 0.001 32.9 8.8 90 143-233 29-124 (284)
236 COG4700 Uncharacterized protei 63.7 1.4E+02 0.003 28.6 14.9 126 306-461 102-230 (251)
237 PF13176 TPR_7: Tetratricopept 63.0 14 0.0003 24.5 3.8 25 465-489 2-26 (36)
238 smart00028 TPR Tetratricopepti 62.7 13 0.00028 22.4 3.6 32 463-495 2-33 (34)
239 PF02259 FAT: FAT domain; Int 62.1 2.1E+02 0.0045 30.0 19.8 126 540-667 143-304 (352)
240 COG4700 Uncharacterized protei 62.0 1.5E+02 0.0033 28.4 16.5 119 466-601 93-213 (251)
241 PF14929 TAF1_subA: TAF RNA Po 61.3 2.3E+02 0.0049 32.2 14.9 159 330-510 258-424 (547)
242 COG0457 NrfG FOG: TPR repeat [ 58.9 1.5E+02 0.0033 27.4 25.6 87 593-686 179-267 (291)
243 TIGR02996 rpt_mate_G_obs repea 58.3 26 0.00057 24.4 4.3 34 642-675 3-36 (42)
244 PF04184 ST7: ST7 protein; In 57.5 3.1E+02 0.0067 30.5 14.7 97 560-660 278-385 (539)
245 KOG3081 Vesicle coat complex C 56.9 2.3E+02 0.0049 28.8 13.3 69 443-512 188-256 (299)
246 KOG1166 Mitotic checkpoint ser 56.7 1.8E+02 0.004 35.3 13.8 135 78-240 20-163 (974)
247 PRK04841 transcriptional regul 55.2 4.6E+02 0.0099 31.8 21.7 202 464-685 411-642 (903)
248 PF02259 FAT: FAT domain; Int 53.2 1.4E+02 0.0031 31.2 11.7 66 154-220 142-212 (352)
249 PRK10941 hypothetical protein; 50.3 48 0.001 33.8 6.9 54 173-227 197-250 (269)
250 PF14561 TPR_20: Tetratricopep 48.4 67 0.0015 26.6 6.3 46 449-495 9-54 (90)
251 KOG4555 TPR repeat-containing 47.6 2.1E+02 0.0046 25.7 9.3 85 442-536 57-144 (175)
252 PF13041 PPR_2: PPR repeat fam 47.5 87 0.0019 22.2 6.2 42 463-504 4-45 (50)
253 KOG4642 Chaperone-dependent E3 45.6 1.5E+02 0.0032 29.6 8.9 56 442-498 24-79 (284)
254 KOG1166 Mitotic checkpoint ser 45.5 2.3E+02 0.0049 34.5 12.3 124 541-671 32-165 (974)
255 PF14561 TPR_20: Tetratricopep 45.2 75 0.0016 26.3 6.2 48 177-225 8-55 (90)
256 PF14853 Fis1_TPR_C: Fis1 C-te 45.1 56 0.0012 24.1 4.7 24 204-227 13-36 (53)
257 KOG4648 Uncharacterized conser 43.4 37 0.00081 35.3 4.7 26 592-617 108-133 (536)
258 COG4785 NlpI Lipoprotein NlpI, 42.0 3.5E+02 0.0076 26.6 16.9 53 443-496 80-132 (297)
259 KOG0545 Aryl-hydrocarbon recep 41.8 2.3E+02 0.005 28.4 9.5 87 442-539 192-296 (329)
260 PF10300 DUF3808: Protein of u 41.0 3.8E+02 0.0082 29.8 12.8 91 390-498 246-340 (468)
261 PF13281 DUF4071: Domain of un 40.9 4.9E+02 0.011 28.0 17.6 152 328-495 180-337 (374)
262 PF13176 TPR_7: Tetratricopept 40.8 48 0.001 21.8 3.6 27 658-684 2-28 (36)
263 PF10602 RPN7: 26S proteasome 39.4 3.4E+02 0.0073 25.7 11.0 93 587-686 42-144 (177)
264 PF13281 DUF4071: Domain of un 39.3 5.2E+02 0.011 27.8 19.3 164 444-615 157-339 (374)
265 COG4840 Uncharacterized protei 39.0 30 0.00066 26.4 2.5 30 42-71 1-33 (71)
266 PF15297 CKAP2_C: Cytoskeleton 38.4 1.1E+02 0.0024 32.1 7.4 58 587-650 109-169 (353)
267 PF11846 DUF3366: Domain of un 38.1 2.6E+02 0.0056 26.7 9.7 52 442-495 125-176 (193)
268 COG4976 Predicted methyltransf 37.6 36 0.00078 33.5 3.4 51 174-225 12-62 (287)
269 PF13041 PPR_2: PPR repeat fam 37.2 1.3E+02 0.0029 21.2 5.8 39 584-622 6-45 (50)
270 KOG1586 Protein required for f 34.8 4.8E+02 0.01 26.1 15.3 60 587-652 160-226 (288)
271 KOG1585 Protein required for f 34.5 2.4E+02 0.0053 28.2 8.5 86 391-489 45-137 (308)
272 PF10602 RPN7: 26S proteasome 31.7 1.2E+02 0.0027 28.7 6.1 64 618-687 39-105 (177)
273 KOG1972 Uncharacterized conser 29.9 3.3E+02 0.0073 31.9 9.8 91 17-112 692-783 (913)
274 KOG1308 Hsp70-interacting prot 29.7 31 0.00068 35.9 1.7 82 594-685 161-245 (377)
275 KOG1972 Uncharacterized conser 28.9 4.6E+02 0.01 30.9 10.7 41 582-622 837-877 (913)
276 COG3629 DnrI DNA-binding trans 28.3 2.1E+02 0.0046 29.3 7.4 48 173-221 169-216 (280)
277 PF12854 PPR_1: PPR repeat 27.2 1.5E+02 0.0033 19.2 4.2 27 461-487 6-32 (34)
278 PRK10941 hypothetical protein; 26.4 5.6E+02 0.012 26.1 10.1 57 442-499 195-251 (269)
279 PF11846 DUF3366: Domain of un 26.2 1.9E+02 0.0041 27.6 6.6 46 176-223 130-175 (193)
280 PF07721 TPR_4: Tetratricopept 26.1 90 0.0019 18.8 2.8 22 465-486 4-25 (26)
281 PF06014 DUF910: Bacterial pro 26.0 1.5E+02 0.0032 22.7 4.3 35 48-82 25-62 (62)
282 KOG4648 Uncharacterized conser 25.6 3.9E+02 0.0085 28.1 8.6 21 390-410 110-130 (536)
283 COG4976 Predicted methyltransf 25.4 1.2E+02 0.0026 29.9 4.8 54 442-496 9-62 (287)
284 PF09851 SHOCT: Short C-termin 25.4 1.4E+02 0.0031 19.2 3.7 23 52-74 3-25 (31)
285 PF09986 DUF2225: Uncharacteri 25.1 6.5E+02 0.014 24.6 10.2 93 391-489 91-192 (214)
286 KOG2610 Uncharacterized conser 24.9 8.4E+02 0.018 25.8 11.4 149 143-320 122-274 (491)
287 KOG0545 Aryl-hydrocarbon recep 24.3 2.5E+02 0.0055 28.1 6.7 63 161-224 233-296 (329)
288 TIGR03504 FimV_Cterm FimV C-te 24.3 1.3E+02 0.0027 21.3 3.5 23 467-489 4-26 (44)
289 cd02684 MIT_2 MIT: domain cont 23.8 2.9E+02 0.0062 22.0 6.0 41 444-507 3-43 (75)
290 PF13374 TPR_10: Tetratricopep 23.6 1.8E+02 0.0038 19.1 4.3 26 464-489 4-29 (42)
291 PF04781 DUF627: Protein of un 22.3 5.2E+02 0.011 22.4 8.4 97 390-494 9-110 (111)
292 KOG0376 Serine-threonine phosp 21.8 1E+02 0.0022 33.8 3.8 93 140-233 20-113 (476)
293 COG3629 DnrI DNA-binding trans 20.9 2.4E+02 0.0053 28.9 6.2 48 442-489 167-214 (280)
No 1
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-74 Score=589.76 Aligned_cols=559 Identities=36% Similarity=0.607 Sum_probs=451.6
Q ss_pred hHHHHHHHHHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 005434 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG 121 (697)
Q Consensus 42 ma~~v~~~le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~ 121 (697)
|||+||.++|+|||||+||+++||||++||+.||++|+.||++|+|+...+.||++||+||.++++||.+|+|+.
T Consensus 1 Mae~iqy~~Er~lpElEdl~~~giFt~dEi~~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~----- 75 (568)
T KOG2396|consen 1 MAEKIQYRMERMLPELEDLKRKGIFTRDEIREIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKK----- 75 (568)
T ss_pred CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434 122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW 200 (697)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~ 200 (697)
..+.+.+|.++.+||..+|.+|+.+|++|+++|..|+.||++.+ +.++.++|..+|+.||++|.+||.+|.|
T Consensus 76 -------~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w 148 (568)
T KOG2396|consen 76 -------RVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW 148 (568)
T ss_pred -------hcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence 23678899999999999999999999999999999999999988 6899999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCC
Q 005434 201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280 (697)
Q Consensus 201 e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 280 (697)
+++.+-|++.||.+|.||||+||+++.||.+|++||+.+.+++..|+.++|.+.... +++
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~e------------- 208 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEE------------- 208 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHH-------------
Confidence 999888999999999999999999999999999999999999999998888754211 000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhC
Q 005434 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF 360 (697)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~ 360 (697)
. ..++.+-.++...+..+...+..-. .+....+. ...++.+.+++.+...+
T Consensus 209 ----------------i---------e~ge~~~~~~~~s~~~~~~~~k~~e--~~~~~~~d--~~kel~k~i~d~~~~~~ 259 (568)
T KOG2396|consen 209 ----------------I---------ERGELAWINYANSVDIIKGAVKSVE--LSVAEKFD--FLKELQKNIIDDLQSKA 259 (568)
T ss_pred ----------------H---------HHHHHHHHhhccchhhhhcchhhcc--hHHHHHHH--HHHHHHHHHHHHHhccC
Confidence 0 0112223333333322211110000 11111112 13578888999999999
Q ss_pred CCChhhHHHHHHhhcccCCCCC------CCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCC
Q 005434 361 LVDPKYWDWLARLKMTDSVSKD------GTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDS 434 (697)
Q Consensus 361 p~~~~~w~~~a~~~l~~~~~~~------~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~ 434 (697)
|.+|.+|..+|+.++.....+. ..+...+-..-+.+..||++|++.+++..||.-||+|+...+..
T Consensus 260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~-------- 331 (568)
T KOG2396|consen 260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTF-------- 331 (568)
T ss_pred CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--------
Confidence 9999999999999886322110 01111122345678899999999999999999999999876531
Q ss_pred CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccC
Q 005434 435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514 (697)
Q Consensus 435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~ 514 (697)
.....+.+...+|+.+.......+.+.-.|+.+.+......+++.+..+.+...+.++..+|..++........
T Consensus 332 ----~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s-- 405 (568)
T KOG2396|consen 332 ----LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS-- 405 (568)
T ss_pred ----hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--
Confidence 01246788999999999998888899999998888877778888888888867888999999999998876543
Q ss_pred CCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN-QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ 593 (697)
Q Consensus 515 ~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~-~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~ 593 (697)
|++-........++..+.....+.|.+..+ .. -+.....++-.|..+.. +....++...|++|+.+
T Consensus 406 -------D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~--~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~~l~~~~e 472 (568)
T KOG2396|consen 406 -------DFQMLFEELFNHLRKQVCSELLISWASASE--GDSLQEDTLDLIISALLSVI----GADSVTLKSKYLDWAYE 472 (568)
T ss_pred -------hhHHHHHHHHHHHHHHhcchhHHHHHHHhh--ccchhHHHHHHHHHHHHHhc----CCceeehhHHHHHHHHH
Confidence 456665444455666665556778876651 11 11233333333333322 23467888999999999
Q ss_pred hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434 594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET 673 (697)
Q Consensus 594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (697)
.++...||++|.++..+||++..++..||++|.++.++ ++..+|++|++|+..+|+++++|.+|..||..+|.+++
T Consensus 473 ~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc----~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en 548 (568)
T KOG2396|consen 473 SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESC----NLANIREYYDRALREFGADSDLWMDYMKEELPLGRPEN 548 (568)
T ss_pred hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhc----CchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCccc
Confidence 99999999999999999999999999999999999988 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccccc
Q 005434 674 ATAVYWRARKTLKDSTALT 692 (697)
Q Consensus 674 a~~vy~ral~~~~~~~~f~ 692 (697)
+..||+||++++.++.+|+
T Consensus 549 ~~~~~~ra~ktl~~~~~~a 567 (568)
T KOG2396|consen 549 CGQIYWRAMKTLQGESAEA 567 (568)
T ss_pred ccHHHHHHHHhhChhhhhc
Confidence 9999999999998876654
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.4e-65 Score=513.13 Aligned_cols=502 Identities=20% Similarity=0.310 Sum_probs=424.7
Q ss_pred chHHHHHHHHHhhhHhHHHHHH-------hCCCCHHHHHHH-HHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 005434 41 AMADVVQYRLERMVDELDDLER-------RGLFTRHEISEI-VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLR 112 (697)
Q Consensus 41 ~ma~~v~~~le~~~~e~~~~~~-------~~~f~~~Ei~~i-~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R 112 (697)
+.+..||++.||+|+|..+-+. .+|.+.+|++++ .|||+.||..|+|+..+++.|++|++||.++.+
T Consensus 14 ktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e----- 88 (677)
T KOG1915|consen 14 KTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKE----- 88 (677)
T ss_pred CCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence 5677899999999999998764 366778999999 799999999999999999999999999998865
Q ss_pred HhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCH
Q 005434 113 KKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVP 191 (697)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~ 191 (697)
..|+++||+|||.....++.||++|++++++++. .+++++++||+...|+..
T Consensus 89 ---------------------------~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 89 ---------------------------IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred ---------------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 4556699999999999999999999999999985 689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhh
Q 005434 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN 271 (697)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~ 271 (697)
++|..|..+| +..||++.||.+|+|++.+.|+ .+.|+.|++||+++.+.
T Consensus 142 qlWyKY~ymE-E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykei----------------------------- 190 (677)
T KOG1915|consen 142 QLWYKYIYME-EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEI----------------------------- 190 (677)
T ss_pred HHHHHHHHHH-HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHH-----------------------------
Confidence 9999999999 7999999999999999999997 79999999999987543
Q ss_pred hccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHH
Q 005434 272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDK 351 (697)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~ 351 (697)
+.||.||++.+-.+|+ +.-|..+..+-.+++ .-..++.
T Consensus 191 --------------------------------------eraR~IYerfV~~HP~-v~~wikyarFE~k~g---~~~~aR~ 228 (677)
T KOG1915|consen 191 --------------------------------------ERARSIYERFVLVHPK-VSNWIKYARFEEKHG---NVALARS 228 (677)
T ss_pred --------------------------------------HHHHHHHHHHheeccc-HHHHHHHHHHHHhcC---cHHHHHH
Confidence 3556666666655554 455555554444433 2356666
Q ss_pred HHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhc
Q 005434 352 ILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIA 425 (697)
Q Consensus 352 il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~ 425 (697)
+++.++..+.++ ..+....|..+.. ...+++|+.+|+-||+.+|.++ ++..|+.|+.+.+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~-------------qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEER-------------QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 666666666554 2335556666643 5779999999999999999874 99999999987642
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC--cHHHHHHH
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD--SVQLWLLR 503 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~--~~~lW~~~ 503 (697)
. .+| ....+.+.+--|+..+..||.+.+.|.+|++++...|+.++.+++|++|+ ++.|. ....|.+|
T Consensus 296 ~----~gI------Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 296 K----EGI------EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRRY 364 (677)
T ss_pred h----hhh------HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHHH
Confidence 2 112 23456788899999999999999999999999999999999999999999 78887 35789999
Q ss_pred HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCC
Q 005434 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGES 579 (697)
Q Consensus 504 i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~ 579 (697)
|.|++.+.-.++. ...|+++.+++|+.||+.+|+++ +.++|+||+.|+.++. ..++++++.|+..|+
T Consensus 365 IYLWinYalyeEl--e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP------- 435 (677)
T KOG1915|consen 365 IYLWINYALYEEL--EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP------- 435 (677)
T ss_pred HHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC-------
Confidence 9888875321111 11278999999999999999987 6899999999987765 578999999998775
Q ss_pred CCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCc-hH
Q 005434 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNT-SL 657 (697)
Q Consensus 580 ~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~-~l 657 (697)
...++..|+++..+.++++++|++|++.|+..|.++..|++|+.||..+| +.+|||.||+.|+++.. +.| -+
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg------dtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG------DTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHhcCcccccHHHH
Confidence 45789999999999999999999999999999999999999999999999 99999999999999877 566 79
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 658 WRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 658 W~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
|..||+||...|..++++++|+|.+...+
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998764
No 3
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=4.3e-54 Score=448.30 Aligned_cols=504 Identities=18% Similarity=0.269 Sum_probs=401.9
Q ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCC
Q 005434 78 RRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD 157 (697)
Q Consensus 78 R~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~ 157 (697)
.-.||+.|.|++.++..|+|||+|... ++.++++.||||||..+|++
T Consensus 13 DvpfEeEilRnp~svk~W~RYIe~k~~---------------------------------sp~k~~~~lYERal~~lp~s 59 (835)
T KOG2047|consen 13 DVPFEEEILRNPFSVKCWLRYIEHKAG---------------------------------SPDKQRNLLYERALKELPGS 59 (835)
T ss_pred ccchHHHHHcCchhHHHHHHHHHHHcc---------------------------------CChHHHHHHHHHHHHHCCCc
Confidence 678999999999999999999999631 24677889999999999999
Q ss_pred HHHHHHHHHHHHHh---c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--CH
Q 005434 158 IELWFKYMEFCRQR---K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--SE 226 (697)
Q Consensus 158 ~~lW~~y~~~~~~~---~------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~--~~ 226 (697)
+++|..|+..-..+ . +..+++.|+|||.....+|.+|+.|+.|.+ .+|+++..|..|+|||+..|. +.
T Consensus 60 ykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~ 138 (835)
T KOG2047|consen 60 YKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHD 138 (835)
T ss_pred hHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhc
Confidence 99999999775442 1 356899999999999999999999999998 799999999999999999995 56
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434 227 ELWVEYLRMELTYLNK---LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL 303 (697)
Q Consensus 227 ~lW~~y~~~E~~~~~~---~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (697)
.||..|++|-.+++.+ ++..+++|...+.. -++.++.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~----------------------------------------~eeyie~ 178 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA----------------------------------------REEYIEY 178 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH----------------------------------------HHHHHHH
Confidence 8999999998876644 23334444443321 0111122
Q ss_pred hhh-hhhhHHHHHHHHHHh-------cCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC-hhhHHHHHHhh
Q 005434 304 FRE-QGLRVLQTIYSGAVE-------ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLK 374 (697)
Q Consensus 304 ~~~-~~~~~a~~iy~~al~-------~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~-~~~w~~~a~~~ 374 (697)
+.. ...+.|...|...+. ..+++.++|..+++++.+.+.....-.+++|+..++..||+. +.+|+.+|+++
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 211 123455555665553 347788999999999998874334568999999999999998 88999999999
Q ss_pred cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHhcCCcc----------cc-cC------
Q 005434 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE----------ET-RD------ 433 (697)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~----lw~~yi~~~~~~~~~~~~----------~~-~~------ 433 (697)
+. .|.+++|+++|++|+.++.|++ +++.|+.|++..++...+ ++ .+
T Consensus 259 Ir-------------~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 259 IR-------------SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HH-------------hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 96 5899999999999999998875 999999999875432110 10 00
Q ss_pred ---------------------CCCCch----------------------------------------------hHhHHHH
Q 005434 434 ---------------------SELPSH----------------------------------------------VEHYISH 446 (697)
Q Consensus 434 ---------------------~~~~~~----------------------------------------------~~~~~~~ 446 (697)
++|.++ ..+.++.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 111111 1156889
Q ss_pred HHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----------------CcHHHHHHHHH
Q 005434 447 LLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-----------------DSVQLWLLRIS 505 (697)
Q Consensus 447 ar~~ye~al~~~~~~----~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P-----------------~~~~lW~~~i~ 505 (697)
||.+|++|+..+... ..+|+.|+++++++.+++.|++++++|+..+-+ .|..+|..|++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999999999986554 578999999999999999999999999832211 25789999999
Q ss_pred HHHHhcccCCCC-------------C--------------------------------------------------Cccc
Q 005434 506 VEIRCVTRNSFS-------------P--------------------------------------------------SKAD 522 (697)
Q Consensus 506 l~~~~~~~~~~~-------------~--------------------------------------------------~~~~ 522 (697)
+++..|+.+++. | ....
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 999988653320 0 0114
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA 600 (697)
Q Consensus 523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A 600 (697)
++++|++|++||+.+||..+..|++.|+++++..| .++..+|++|..++.++. ...++..|+.......|+..+
T Consensus 566 lEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 566 LERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCccc
Confidence 78888899999988888888888888988888777 567888888887776554 577888899999999999999
Q ss_pred HHHHHHHHhCCCCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHH
Q 005434 601 REMYKRFLALPRPG--LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATA 676 (697)
Q Consensus 601 R~iy~~~i~~~p~~--~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~ 676 (697)
|.||++||+..|.+ ..++++|++||.++| +++|||.||-.+.+.++ .++++|..|-.||.+|||.++.+.
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklG------EidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLG------EIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhh------hHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999998876 359999999999999 99999999999999988 678999999999999999988888
Q ss_pred HH
Q 005434 677 VY 678 (697)
Q Consensus 677 vy 678 (697)
..
T Consensus 716 ML 717 (835)
T KOG2047|consen 716 ML 717 (835)
T ss_pred HH
Confidence 54
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-47 Score=386.52 Aligned_cols=503 Identities=19% Similarity=0.241 Sum_probs=405.2
Q ss_pred HHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHH
Q 005434 68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY 147 (697)
Q Consensus 68 ~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iy 147 (697)
.++.++|-|.|+.||..|..+..++.-|++||++|+... .++++++++
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk--------------------------------~vNhARNv~ 130 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNK--------------------------------QVNHARNVW 130 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhh--------------------------------hHhHHHHHH
Confidence 367789999999999999999999999999999997542 478999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434 148 RLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (697)
Q Consensus 148 eral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~ 226 (697)
+||++..|.-.++|.+|+-++...|+ ..++.+|+|++...|. .+.|..|+.||+ ..++++.||.+|+|-+-.||+ .
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~-v 207 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK-V 207 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc-H
Confidence 99999999999999999999999886 5799999999999997 799999999998 899999999999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhh
Q 005434 227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE 306 (697)
Q Consensus 227 ~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (697)
.-|+.|++||..+|+...+|. |+..+.+.+..+. .. ..+...-+.+.+
T Consensus 208 ~~wikyarFE~k~g~~~~aR~-VyerAie~~~~d~--~~-----------------------------e~lfvaFA~fEe 255 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARS-VYERAIEFLGDDE--EA-----------------------------EILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHH-HHHHHHHHhhhHH--HH-----------------------------HHHHHHHHHHHH
Confidence 999999999999998777776 4333332211100 00 001112223322
Q ss_pred --hhhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHccccCcHHHHHHH-------HHHHHhhCCCChhhHHHHHHhhc
Q 005434 307 --QGLRVLQTIYSGAVEALPSS--FNLRQRFFEIVEATNLAQSDDMHDKI-------LSDMQRDFLVDPKYWDWLARLKM 375 (697)
Q Consensus 307 --~~~~~a~~iy~~al~~~p~~--~~~~~~~~~~~~~fe~~~~~~~~~~i-------l~~~~~~~p~~~~~w~~~a~~~l 375 (697)
+.+++|+.||+-|+.++|++ -++...|..+-.+|+. ...+.+.| ++..++..|.+...|..+.++..
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd--~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD--KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc--hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence 35789999999999999987 5677777777777763 22233333 67889999999999999999875
Q ss_pred ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (697)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye 452 (697)
. .|..+..+++|++|+.++|... .|..||-++.+...-. +....+++++|.+|.
T Consensus 334 ~-------------~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye----------Ele~ed~ertr~vyq 390 (677)
T KOG1915|consen 334 S-------------VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE----------ELEAEDVERTRQVYQ 390 (677)
T ss_pred h-------------cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHHH
Confidence 4 3678899999999999998653 6777766666532110 012466899999999
Q ss_pred HHHHcCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434 453 KAEAMGCL----TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (697)
Q Consensus 453 ~al~~~~~----~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 528 (697)
.|+..-|+ ..++|+.|++|+.++.++..|++++..|+ +.||.. +++..||+++++.++ +++++.
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~-KlFk~YIelElqL~e----------fDRcRk 458 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKD-KLFKGYIELELQLRE----------FDRCRK 458 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCch-hHHHHHHHHHHHHhh----------HHHHHH
Confidence 99998665 37999999999999999999999999999 999984 899999999999874 899999
Q ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434 529 LLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR 606 (697)
Q Consensus 529 ~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~ 606 (697)
+|++-|...|. +...|..|+++....+ ++++.+|+.|++-.... -..-+|.+|++|....|.+++||++|++
T Consensus 459 LYEkfle~~Pe--~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld----mpellwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 459 LYEKFLEFSPE--NCYAWSKYAELETSLGDTDRARAIFELAISQPALD----MPELLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHhcChH--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc----cHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence 99999987774 4788999999887766 68999999998643222 2456799999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHhccCCCC----------CcccHHHHHHHHHHHHhhCC-CCc-----hHHHHHHHHHHhcCC
Q 005434 607 FLALPRPGLVLYQNCIELENNLASVG----------DKDSLVNARKLFESALATYD-QNT-----SLWRDYYSTETKLGT 670 (697)
Q Consensus 607 ~i~~~p~~~~~~~~~i~lE~~~~~~~----------~~~~~~raR~lye~al~~~~-~~~-----~lW~~y~~fE~~~G~ 670 (697)
.+...+. +++|+.++.+|.+..... +..++.+||++||+|...+. ..+ .+...|.+||..+|+
T Consensus 533 lL~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~ 611 (677)
T KOG1915|consen 533 LLDRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGT 611 (677)
T ss_pred HHHhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 9997655 459999999998553211 23478999999999999876 332 588899999999997
Q ss_pred hhhHHHHHHHH
Q 005434 671 SETATAVYWRA 681 (697)
Q Consensus 671 ~~~a~~vy~ra 681 (697)
......|-.+.
T Consensus 612 ~~d~~~V~s~m 622 (677)
T KOG1915|consen 612 EGDVERVQSKM 622 (677)
T ss_pred hhhHHHHHHhc
Confidence 77666654443
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=325.90 Aligned_cols=471 Identities=19% Similarity=0.222 Sum_probs=365.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccc
Q 005434 57 LDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSD 136 (697)
Q Consensus 57 ~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 136 (697)
|.||+...=.+..+|.+|-+.|.-+---...+|+++.-|+.-+.-|..-.+
T Consensus 250 LtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagK----------------------------- 300 (913)
T KOG0495|consen 250 LTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGK----------------------------- 300 (913)
T ss_pred HhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhH-----------------------------
Confidence 345555455567889999999998888888899999999999988865432
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 137 FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (697)
Q Consensus 137 ~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~ 216 (697)
..-++++-.++|...|.+.++|+.-+.+ +....+..+...|+...|+++.||+.++.+|- +...-++++.
T Consensus 301 ---l~~Ar~~I~~GCe~cprSeDvWLeaiRL---hp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~----~~~~K~RVlR 370 (913)
T KOG0495|consen 301 ---LSVARNLIMKGCEECPRSEDVWLEAIRL---HPPDVAKTVVANAVRFLPTSVRLWLKAADLES----DTKNKKRVLR 370 (913)
T ss_pred ---HHHHHHHHHHHHhhCCchHHHHHHHHhc---CChHHHHHHHHHHHHhCCCChhhhhhHHhhhh----HHHHHHHHHH
Confidence 3345577888899999999999876654 22345778888899999999999999888873 4566678889
Q ss_pred HhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (697)
Q Consensus 217 r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (697)
+||...|.|..||-..+.||...
T Consensus 371 KALe~iP~sv~LWKaAVelE~~~--------------------------------------------------------- 393 (913)
T KOG0495|consen 371 KALEHIPRSVRLWKAAVELEEPE--------------------------------------------------------- 393 (913)
T ss_pred HHHHhCCchHHHHHHHHhccChH---------------------------------------------------------
Confidence 99999998888998888776421
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~ 376 (697)
.||.++.+|++.+|.+.++|..+..+. +.+.++++++++.+..|.++..|+..|+++..
T Consensus 394 --------------darilL~rAveccp~s~dLwlAlarLe-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ 452 (913)
T KOG0495|consen 394 --------------DARILLERAVECCPQSMDLWLALARLE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEA 452 (913)
T ss_pred --------------HHHHHHHHHHHhccchHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Confidence 144445555555555555544433211 23445555555555555555555555555443
Q ss_pred cCCCC------------------------------------------------------CCC---------CcCccchHH
Q 005434 377 DSVSK------------------------------------------------------DGT---------SEDIVPSQM 393 (697)
Q Consensus 377 ~~~~~------------------------------------------------------~~~---------~~~~~~~~~ 393 (697)
+++-. .+. ......+.+
T Consensus 453 ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~ 532 (913)
T KOG0495|consen 453 NGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI 532 (913)
T ss_pred cCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence 21100 000 011224567
Q ss_pred HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434 394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY 472 (697)
Q Consensus 394 ~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~ 472 (697)
+.||.||..+|+..|..+ +|..-+.|++.+ +..+....++++|+...|..+.+|+.|+...
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~h------------------gt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSH------------------GTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 899999999999999887 999999998864 3467899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Q 005434 473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKF 552 (697)
Q Consensus 473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~ 552 (697)
+..|+...|+.++..|. ..+|+|.++|...+.++..+. ..+++|.+|.+|-...| ...+|..++.+
T Consensus 595 w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en~----------e~eraR~llakar~~sg---TeRv~mKs~~~ 660 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFEND----------ELERARDLLAKARSISG---TERVWMKSANL 660 (913)
T ss_pred HhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccc----------cHHHHHHHHHHHhccCC---cchhhHHHhHH
Confidence 99999999999999999 899999999999999997665 37999999999976555 35899999887
Q ss_pred HHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCC
Q 005434 553 FMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS 630 (697)
Q Consensus 553 ~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~ 630 (697)
+...+ +.+..+++.|++.++. .+.+|...-+.+.+.++++.||..|..++..||.++.+|+..+.||+..+
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~- 733 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG- 733 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-
Confidence 76554 6778888999876532 23344433445677899999999999999999999999999999999998
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 631 VGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 631 ~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
++.+||.+++++.-.+|+++.+|+.-+++|.+.|+.+.|..+..+|++.||++
T Consensus 734 -----~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 734 -----QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred -----chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 89999999999999999999999999999999999999999999999999877
No 6
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=326.95 Aligned_cols=196 Identities=37% Similarity=0.660 Sum_probs=187.1
Q ss_pred hHHHHHHHHHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 005434 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG 121 (697)
Q Consensus 42 ma~~v~~~le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~ 121 (697)
|+++||..+|||+||++||+++||||++||+.|+++|+.||.+|+|+.+.+.||++||+||.++++||.+|.|++...
T Consensus 1 m~ekiqyymEq~IpEleDl~ekgiFs~dE~~~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~-- 78 (435)
T COG5191 1 MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVG-- 78 (435)
T ss_pred CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999875331
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434 122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW 200 (697)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~ 200 (697)
-+.+.+|+++.+++..+|.|+..+||+|+++|..|+.+..+.| +..+.++|..||+.||.+..+|+.++.+
T Consensus 79 --------~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~ 150 (435)
T COG5191 79 --------KKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF 150 (435)
T ss_pred --------ccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence 1578899999999999999999999999999999999999888 5789999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005434 201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247 (697)
Q Consensus 201 e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~ 247 (697)
+++..+|++.+|.+|++|||.+|.++.+|.+|++||+.+..++-+|+
T Consensus 151 e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~~R~ 197 (435)
T COG5191 151 ELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRR 197 (435)
T ss_pred hhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999888887
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=281.08 Aligned_cols=527 Identities=17% Similarity=0.222 Sum_probs=400.1
Q ss_pred hhhHhHHH--HHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhc
Q 005434 52 RMVDELDD--LERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK 129 (697)
Q Consensus 52 ~~~~e~~~--~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~ 129 (697)
++.|--+| |+.-.|-.++.-+.||-. .++..|+++.-|++-++-|.....
T Consensus 313 e~cprSeDvWLeaiRLhp~d~aK~vvA~------Avr~~P~Sv~lW~kA~dLE~~~~~---------------------- 364 (913)
T KOG0495|consen 313 EECPRSEDVWLEAIRLHPPDVAKTVVAN------AVRFLPTSVRLWLKAADLESDTKN---------------------- 364 (913)
T ss_pred hhCCchHHHHHHHHhcCChHHHHHHHHH------HHHhCCCChhhhhhHHhhhhHHHH----------------------
Confidence 44455555 567777788887777654 566789999999999998865421
Q ss_pred ccccccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 005434 130 MKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209 (697)
Q Consensus 130 ~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~ 209 (697)
-..++.+||...|+++.||..-++++. .+.++.++.||+..+|.+-.+|+.+++++. ++
T Consensus 365 -------------K~RVlRKALe~iP~sv~LWKaAVelE~---~~darilL~rAveccp~s~dLwlAlarLet-----Ye 423 (913)
T KOG0495|consen 365 -------------KKRVLRKALEHIPRSVRLWKAAVELEE---PEDARILLERAVECCPQSMDLWLALARLET-----YE 423 (913)
T ss_pred -------------HHHHHHHHHHhCCchHHHHHHHHhccC---hHHHHHHHHHHHHhccchHHHHHHHHHHHH-----HH
Confidence 114677788888888888887777753 234788888888888888888888888763 67
Q ss_pred HHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434 210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG 289 (697)
Q Consensus 210 ~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 289 (697)
+|+.+++++=+..|+++.||+..+++|...++....-+. +..+...+..+-....-..|+.++...-. .+..-.
T Consensus 424 nAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki-i~rgl~~L~~ngv~i~rdqWl~eAe~~e~-----agsv~T 497 (913)
T KOG0495|consen 424 NAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI-IDRGLSELQANGVEINRDQWLKEAEACED-----AGSVIT 497 (913)
T ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHhhcceeecHHHHHHHHHHHhh-----cCChhh
Confidence 788888888888888888888888888776654332221 11111112222112233455543221100 000000
Q ss_pred ----------CCCcc----hhhhhhhhhh-hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHH
Q 005434 290 ----------SQPEN----MESQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILS 354 (697)
Q Consensus 290 ----------~~~~~----~~~~~~~~~~-~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~ 354 (697)
.++.. ..|.+..+.+ .....+.||+||..|++-.|.+-.+|.....+-..++ +.+....+++
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg---t~Esl~Allq 574 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG---TRESLEALLQ 574 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 00000 1132222222 2335789999999999999998889988876665554 4678899999
Q ss_pred HHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC
Q 005434 355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD 433 (697)
Q Consensus 355 ~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~ 433 (697)
+++...|+.+.+|.++|+..+. .|++..||.+..+|++..|.+. +|.+-++++-.
T Consensus 575 kav~~~pkae~lwlM~ake~w~-------------agdv~~ar~il~~af~~~pnseeiwlaavKle~e----------- 630 (913)
T KOG0495|consen 575 KAVEQCPKAEILWLMYAKEKWK-------------AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE----------- 630 (913)
T ss_pred HHHHhCCcchhHHHHHHHHHHh-------------cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-----------
Confidence 9999999999999999999886 3778899999999999999876 99988887643
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434 434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (697)
Q Consensus 434 ~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (697)
....++||.+|.+|... ..++.+|..++.|++-.++.++|+.++++++ +.+|+..++|+..-+++.+.+
T Consensus 631 -------n~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-k~fp~f~Kl~lmlGQi~e~~~-- 699 (913)
T KOG0495|consen 631 -------NDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEAL-KSFPDFHKLWLMLGQIEEQME-- 699 (913)
T ss_pred -------cccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-HhCCchHHHHHHHhHHHHHHH--
Confidence 24478999999999886 4468999999999999999999999999999 899999999999999998876
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434 514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV 591 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~ 591 (697)
+++.+++.|-..++.+|+ +.+||+..+.+.+..+ -+++.+++++...-+ ....+|..-+.++
T Consensus 700 --------~ie~aR~aY~~G~k~cP~--~ipLWllLakleEk~~~~~rAR~ildrarlkNP------k~~~lwle~Ir~E 763 (913)
T KOG0495|consen 700 --------NIEMAREAYLQGTKKCPN--SIPLWLLLAKLEEKDGQLVRARSILDRARLKNP------KNALLWLESIRME 763 (913)
T ss_pred --------HHHHHHHHHHhccccCCC--CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC------CcchhHHHHHHHH
Confidence 489999999999999996 5799999888777665 478999999875322 2456777778888
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCC----------CC--------------CcccHHHHHHHHHHH
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS----------VG--------------DKDSLVNARKLFESA 647 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~----------~~--------------~~~~~~raR~lye~a 647 (697)
.+.|+.+.|+.+..+|+.-||.+..+|...|.||..-.. ++ +.-.++++|+.|++|
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864321 11 234789999999999
Q ss_pred HhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 648 l~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+..+++..+.|--+..||..||+.+....||.+...+=|.
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999988766543
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=277.21 Aligned_cols=477 Identities=13% Similarity=0.212 Sum_probs=338.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-------CHHHHHHHHHH
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-------NVTAARALMQN 217 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-------~~~~aR~~~~r 217 (697)
.-||.-+.++|.+++.|+.||++-......+.+-+|+|||+.+|.+.++|..|++.-.++.. -+...-+.|+|
T Consensus 14 vpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 14 VPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred cchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 46788889999999999999998665445689999999999999999999999965433222 25667789999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
|+.+.-+.+.||+.|+.|.+..+.....|+. +..+..++| ...+.++|.-
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t-fdrALraLp---vtqH~rIW~l-------------------------- 143 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRT-FDRALRALP---VTQHDRIWDL-------------------------- 143 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHH-HHHHHHhCc---hHhhccchHH--------------------------
Confidence 9998888899999999999998887777763 343333332 2233444432
Q ss_pred hhhhhhhhhhh-hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccC-cHHHHHHHHHH---HHhhCCCChhhHHHHHH
Q 005434 298 QKSVDLFREQG-LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQ-SDDMHDKILSD---MQRDFLVDPKYWDWLAR 372 (697)
Q Consensus 298 ~~~~~~~~~~~-~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~-~~~~~~~il~~---~~~~~p~~~~~w~~~a~ 372 (697)
.+..+...+ .+.+..||++.++-.|.+ ...|++.+..-+..+ ......+++++ ..+.-|.+..+|..+..
T Consensus 144 --yl~Fv~~~~lPets~rvyrRYLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 144 --YLKFVESHGLPETSIRVYRRYLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred --HHHHHHhCCChHHHHHHHHHHHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 111122222 247899999999987765 567777776543211 11222223321 22345667888988777
Q ss_pred hhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcC-C---------------ccccc--
Q 005434 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAP-K---------------KEETR-- 432 (697)
Q Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~-~---------------~~~~~-- 432 (697)
+-..+... ..--..-+++..|+...++.- +|-..+++......- + .+-+.
T Consensus 219 lis~~p~~----------~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if 288 (835)
T KOG2047|consen 219 LISQNPDK----------VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF 288 (835)
T ss_pred HHHhCcch----------hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence 65432111 111124568888988887643 787666654432100 0 00000
Q ss_pred --------------CC-CCCch---------------hH-------------------hH--------------HHHHHH
Q 005434 433 --------------DS-ELPSH---------------VE-------------------HY--------------ISHLLT 449 (697)
Q Consensus 433 --------------~~-~~~~~---------------~~-------------------~~--------------~~~ar~ 449 (697)
++ ...+. .. .+ ..+...
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ 368 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHH
Confidence 01 00000 00 00 234566
Q ss_pred HHHHHHHc-CCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCc
Q 005434 450 VYEKAEAM-GCL-----TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 450 ~ye~al~~-~~~-----~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
+|.+|+.. +|. -..+|+.+++|++.+|+++.||.++++|++.++|.- ..+|..|.++++...
T Consensus 369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~--------- 439 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE--------- 439 (835)
T ss_pred HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh---------
Confidence 78888775 554 257999999999999999999999999997777764 678999999998775
Q ss_pred cchHHHHHHHHHHHhhcChh-----------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434 521 ADILSIFELLKCILTKVSAL-----------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGF 581 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~-----------------~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~ 581 (697)
+++.+..+.++|+. +|.. .|+++|.+|+++++..+ +.++++|++.+.. .+ .++
T Consensus 440 -~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL---ri---aTP 511 (835)
T KOG2047|consen 440 -NFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL---RI---ATP 511 (835)
T ss_pred -hHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---hc---CCH
Confidence 37888888888864 3322 16889999999999888 7889999998763 22 278
Q ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC--HHHHHHHHH-HHhccCCCCCcccHHHHHHHHHHHHhhCC--CCch
Q 005434 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPG--LVLYQNCIE-LENNLASVGDKDSLVNARKLFESALATYD--QNTS 656 (697)
Q Consensus 582 ~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~--~~~~~~~i~-lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~ 656 (697)
.+...|+.|+..+.-++.+.++|+++|.+++.. .++|..|+. +-...|.. .++|||.|||+|+..|| ....
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~----klEraRdLFEqaL~~Cpp~~aKt 587 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT----KLERARDLFEQALDGCPPEHAKT 587 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcCCHHHHHH
Confidence 889999999999999999999999999986543 458888773 33455533 89999999999999999 4459
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 657 LWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 657 lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+++.|++||+++|...+|..||+||...++.
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999988753
No 9
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.96 E-value=6.8e-26 Score=234.18 Aligned_cols=448 Identities=14% Similarity=0.181 Sum_probs=328.6
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHH
Q 005434 82 EYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161 (697)
Q Consensus 82 E~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW 161 (697)
+.+|.-+|.++..|-.-|++=.+ ..+..++..||+.+..||.+...|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---------------------------------~~~~~~R~~YEq~~~~FP~s~r~W 56 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---------------------------------QPIDKVRETYEQLVNVFPSSPRAW 56 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---------------------------------CCHHHHHHHHHHHhccCCCCcHHH
Confidence 78899999999999887774311 136678899999999999999999
Q ss_pred HHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-------CCCHHHHHHHH
Q 005434 162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-------PTSEELWVEYL 233 (697)
Q Consensus 162 ~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~-------p~~~~lW~~y~ 233 (697)
+.||+-+...+ +..+.++|.|||..-- +.+||..|+.+..+.+|....+|..+-+|..+. +.+..+|.+|+
T Consensus 57 ~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 57 KLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 99999998876 6899999999997543 389999999998888899888887776665543 46779999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (697)
Q Consensus 234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (697)
.|....- + ...|. .+|.++.+|
T Consensus 136 ~FL~~ve------------a------------~gk~e----------------------------------e~QRI~~vR 157 (656)
T KOG1914|consen 136 NFLEGVE------------A------------VGKYE----------------------------------ENQRITAVR 157 (656)
T ss_pred HHHHccc------------c------------cccHH----------------------------------HHHHHHHHH
Confidence 8864310 0 01111 124567899
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (697)
Q Consensus 314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~ 393 (697)
.+|++|+.+.-.+. ..+|+-|..|+...+...+++++.+... .+
T Consensus 158 riYqral~tPm~nl---EkLW~DY~~fE~~IN~~tarK~i~e~s~---------------------------------~Y 201 (656)
T KOG1914|consen 158 RIYQRALVTPMHNL---EKLWKDYEAFEQEINIITARKFIGERSP---------------------------------EY 201 (656)
T ss_pred HHHHHHhcCccccH---HHHHHHHHHHHHHHHHHHHHHHHHhhCH---------------------------------HH
Confidence 99999998865543 4556666677654344556665543222 23
Q ss_pred HHHHHHHHH------Hhhc----CC---------chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434 394 QKAIQVYEE------ALKN----VP---------SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (697)
Q Consensus 394 ~~a~~vye~------al~~----~~---------~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a 454 (697)
..||.+|++ |+.. +| ...+|..+|++++....... + ..-...+..-+|+++
T Consensus 202 m~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~-~---------~~~~~~Rv~yayeQ~ 271 (656)
T KOG1914|consen 202 MNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL-D---------GTMLTRRVMYAYEQC 271 (656)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc-c---------ccHHHHHHHHHHHHH
Confidence 334444433 2221 12 12389999999986432111 1 112345888999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434 455 EAMGCLTEDIAHRYVTLYLQLGK--------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 455 l~~~~~~~~lw~~y~~l~~~~~~--------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
+..-+.++++|.+|..++...++ .++|..++++++......+.-+...+.+.++..... +
T Consensus 272 ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~-----n- 345 (656)
T KOG1914|consen 272 LLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDD-----N- 345 (656)
T ss_pred HHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccc-----c-
Confidence 99989999999999999998887 788999999998544444677888888877654220 1
Q ss_pred cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~ 598 (697)
..+.+-+.+.+.+.... .+-.-+|..|++|..+.. ..++.+|.+|.+. .......-+..+++++. ..++.+
T Consensus 346 -~~~~~~~~~~~ll~~~~-~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~----~r~~hhVfVa~A~mEy~-cskD~~ 418 (656)
T KOG1914|consen 346 -KEKKVHEIYNKLLKIED-IDLTLVYCQYMNFIRRAEGLKAARKIFKKARED----KRTRHHVFVAAALMEYY-CSKDKE 418 (656)
T ss_pred -hhhhhHHHHHHHHhhhc-cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc----cCCcchhhHHHHHHHHH-hcCChh
Confidence 24556667888765432 222457888888776543 5789999998753 22122333445566654 578999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh--CC-CCchHHHHHHHHHHhcCChhhHH
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YD-QNTSLWRDYYSTETKLGTSETAT 675 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~--~~-~~~~lW~~y~~fE~~~G~~~~a~ 675 (697)
-|..||+-++...+.++.+-.+|+++-..++ +-+.+|.+||+++.. .+ +..++|..|++||...||...+.
T Consensus 419 ~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 419 TAFRIFELGLKKFGDSPEYVLKYLDFLSHLN------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999999999999999888 779999999999998 22 45699999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005434 676 AVYWRARKTLK 686 (697)
Q Consensus 676 ~vy~ral~~~~ 686 (697)
+|-.|-...++
T Consensus 493 ~lekR~~~af~ 503 (656)
T KOG1914|consen 493 KLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhcc
Confidence 99999888887
No 10
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.92 E-value=2e-21 Score=201.34 Aligned_cols=415 Identities=13% Similarity=0.155 Sum_probs=300.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH
Q 005434 148 RLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (697)
Q Consensus 148 eral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~ 227 (697)
++-+..+|.|++.|...++........++|.+|++.+..+|..|..|..|++.|+ ...+++.+.++|.|||...-+ -+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 4557889999999999999887776789999999999999999999999999998 789999999999999987654 79
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (697)
Q Consensus 228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (697)
||..|+..--+.. +... +
T Consensus 88 LW~lYl~YVR~~~----------~~~~----------------------------------------------------~ 105 (656)
T KOG1914|consen 88 LWKLYLSYVRETK----------GKLF----------------------------------------------------G 105 (656)
T ss_pred HHHHHHHHHHHHc----------cCcc----------------------------------------------------h
Confidence 9999985432110 0000 0
Q ss_pred hhhHHHHHHHHHHhcC---CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCC
Q 005434 308 GLRVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGT 384 (697)
Q Consensus 308 ~~~~a~~iy~~al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~ 384 (697)
.-.....-|+-+++.+ +.+..+|..|+.+++..+..+ +++.
T Consensus 106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~g---------------------------k~ee--------- 149 (656)
T KOG1914|consen 106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVG---------------------------KYEE--------- 149 (656)
T ss_pred HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccc---------------------------cHHH---------
Confidence 0012233466666665 345678999888886543211 1111
Q ss_pred CcCccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-----
Q 005434 385 SEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM----- 457 (697)
Q Consensus 385 ~~~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~----- 457 (697)
..+++..|.+|++||.+--. .+||.-|..|+.+........ .+ .......-.||.+|++....
T Consensus 150 -----~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK-~i----~e~s~~Ym~AR~~~qel~~lt~GL~ 219 (656)
T KOG1914|consen 150 -----NQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARK-FI----GERSPEYMNARRVYQELQNLTRGLN 219 (656)
T ss_pred -----HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH-HH----HhhCHHHHHHHHHHHHHHHHHhhhc
Confidence 24789999999999976322 349999999988632100000 00 00113345677777765432
Q ss_pred --CCC-----c------HHHHHHHHHHHHhcCCH--------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc--C
Q 005434 458 --GCL-----T------EDIAHRYVTLYLQLGKL--------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR--N 514 (697)
Q Consensus 458 --~~~-----~------~~lw~~y~~l~~~~~~~--------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~--~ 514 (697)
+|. + .++|..|++++..++-- .+.--++++++ ..++.++++|..+.......+.+ +
T Consensus 220 r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l-l~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 220 RNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL-LYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 222 1 36899999999876521 12223578888 67888999999998877654321 0
Q ss_pred CC-CCCc-cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhhhCCCCCCCCChHHHH
Q 005434 515 SF-SPSK-ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-----HYFDKLVEIALISVAKDGGGESGFSLPSAI 587 (697)
Q Consensus 515 ~~-~~~~-~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y 587 (697)
-+ .++. .-.+++..+|++++..+... ...++..|++|.+.+. +.....+++++...... ..-++..|
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-----~tLv~~~~ 372 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-----LTLVYCQY 372 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-----CceehhHH
Confidence 00 0100 12467888999999876543 5677888888887654 24556677776544332 45568899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh
Q 005434 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (697)
Q Consensus 588 l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (697)
+.++.+..|++.||.||.+|.+..-...++|...+.+|..... +.+-|-.+|+.++..+|+++.+-..|++|...
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-----D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-----DKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 9999999999999999999999877777899999999987642 78899999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhh
Q 005434 668 LGTSETATAVYWRARKT 684 (697)
Q Consensus 668 ~G~~~~a~~vy~ral~~ 684 (697)
.|+-.++|.+|+|++.+
T Consensus 448 lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTS 464 (656)
T ss_pred hCcchhHHHHHHHHHhc
Confidence 99999999999999998
No 11
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=99.87 E-value=1.9e-22 Score=163.06 Aligned_cols=83 Identities=59% Similarity=0.921 Sum_probs=75.4
Q ss_pred HHhhhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhc
Q 005434 50 LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK 129 (697)
Q Consensus 50 le~~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~ 129 (697)
||+|||||++|+++||||++||++|++||+.|||+|+++++.+.||++||+||+++++|+++|+++++.
T Consensus 1 LE~~vpele~l~~~~lFt~~EI~~IvkkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~L~~~R~~~~~~----------- 69 (83)
T PF08640_consen 1 LERMVPELEDLERKGLFTKEEIREIVKKRRDFEYKLQRRGKKKSDFLRYIEYEMNLEKLRRKRRKRLGI----------- 69 (83)
T ss_pred CchhhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------
Confidence 699999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ccccccchhHHHHH
Q 005434 130 MKKSVSDFSGVARI 143 (697)
Q Consensus 130 ~~~~~~~~~~~~r~ 143 (697)
.+.+.+++++.+||
T Consensus 70 ~~~~~~~~~i~~RI 83 (83)
T PF08640_consen 70 KKNSEIEYSIVRRI 83 (83)
T ss_pred CccchhhhhHhccC
Confidence 14556778877764
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=1.1e-17 Score=200.77 Aligned_cols=451 Identities=13% Similarity=0.074 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.....+...+......| ...+..++++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKA 491 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 345566777777777776666665555555544 356677777777777777777777776664 567777777777777
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
+...|.+...|...+.+....+....+... +..... .+|. +...|.
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~---~~~~--~~~~~~---------------------------- 537 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQR-FEKVLT---IDPK--NLRAIL---------------------------- 537 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHH---hCcC--cHHHHH----------------------------
Confidence 777777666666666655443332222221 111000 0000 000000
Q ss_pred hhhhhh-hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434 299 KSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (697)
Q Consensus 299 ~~~~~~-~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~ 377 (697)
.....+ ..+..+.|...|+++++..|.+...+..+...+...+ ....+..+++.+....|.++..|..++..+..
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 613 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG---QLKKALAILNEAADAAPDSPEAWLMLGRAQLA- 613 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Confidence 000000 1123456666677776666666555555555444332 24556666666666677777777766666653
Q ss_pred CCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (697)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~ 456 (697)
.++++.|...|+++++..|... .|......... .+..+.|...|++++.
T Consensus 614 ------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 614 ------------AGDLNKAVSSFKKLLALQPDSALALLLLADAYAV------------------MKNYAKAITSLKRALE 663 (899)
T ss_pred ------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHh
Confidence 3556667777777766655432 33333332221 2335566666666666
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
.+|.+...|...+.++...|++++|..+++.+. ...|.+...|..........+ +.+.+.+.|++++..
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-KQHPKAALGFELEGDLYLRQK----------DYPAAIQAYRKALKR 732 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCcCChHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhh
Confidence 666666666666666666666666666666666 455666666655555444443 245566666666654
Q ss_pred cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434 537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG 614 (697)
Q Consensus 537 ~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~ 614 (697)
.|.. ..+...+..+...+ +.+...+++++...+. ...+...........|+.++|..+|++++...|..
T Consensus 733 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 733 APSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred CCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 4432 22222222222222 3344444444432111 11112222333344556666666666666655555
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
...+...+.+....+ + .+|...|++++...|.++.+|..++......|+.+.|..+|+++++.-+
T Consensus 804 ~~~~~~l~~~~~~~~------~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 804 AVVLNNLAWLYLELK------D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHhcC------c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555544444444444 3 4455566666655555555555555555555666666666666655443
No 13
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.86 E-value=2.1e-18 Score=175.01 Aligned_cols=467 Identities=13% Similarity=0.115 Sum_probs=304.6
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHHHH
Q 005434 83 YRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWF 162 (697)
Q Consensus 83 ~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~lW~ 162 (697)
.+|+-+|+++..|..-|+|-..+++ ....+.+|+....-||--...|.
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~s--------------------------------~~~~re~yeq~~~pfp~~~~aw~ 80 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQES--------------------------------MDAEREMYEQLSSPFPIMEHAWR 80 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhhh--------------------------------HHHHHHHHHHhcCCCccccHHHH
Confidence 5688899999999999988655432 33455799999999999999999
Q ss_pred HHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH-------HHhhhhCCCCHHHHHHHH
Q 005434 163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT-AARALM-------QNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 163 ~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~-~aR~~~-------~r~l~~~p~~~~lW~~y~ 233 (697)
-|+.=+...+ +..+..+|.|||...- +.+||..|+.+--..++.++ .+|..+ ..+.-+.|.+..+|.+|.
T Consensus 81 ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~ 159 (660)
T COG5107 81 LYMSGELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYG 159 (660)
T ss_pred HHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHH
Confidence 9998766655 5678899999997544 37899999998743332222 233333 334445578889999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (697)
Q Consensus 234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (697)
.|...... -..| +. .+.++..|
T Consensus 160 ~fle~~~~------------------------~~kw----------------------------Ee------Qqrid~iR 181 (660)
T COG5107 160 LFLEYIEE------------------------LGKW----------------------------EE------QQRIDKIR 181 (660)
T ss_pred HHHHhccc------------------------cccH----------------------------HH------HHHHHHHH
Confidence 87643110 0112 11 13567899
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH-hhcccCCCCCCCCcCccchH
Q 005434 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR-LKMTDSVSKDGTSEDIVPSQ 392 (697)
Q Consensus 314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~-~~l~~~~~~~~~~~~~~~~~ 392 (697)
.+|++|+.+.-++ ...+|+-+..|+..-+...+++++... +|......+. .++.+..+.
T Consensus 182 ~~Y~ral~tP~~n---leklW~dy~~fE~e~N~~TarKfvge~------sp~ym~ar~~yqe~~nlt~G----------- 241 (660)
T COG5107 182 NGYMRALQTPMGN---LEKLWKDYENFELELNKITARKFVGET------SPIYMSARQRYQEIQNLTRG----------- 241 (660)
T ss_pred HHHHHHHcCcccc---HHHHHHHHHHHHHHHHHHHHHHHhccc------CHHHHHHHHHHHHHHHHhcc-----------
Confidence 9999999876554 356666677776432334455544321 1221111111 111111110
Q ss_pred HHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005434 393 MQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT 470 (697)
Q Consensus 393 ~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~ 470 (697)
+..+--++.+--..++. ..-|..+|++++.....-.++ -...+.--+|++++..-+.++++|.+|..
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~-----------~~~qRi~y~~~q~~~y~~~~~evw~dys~ 310 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGR-----------PHEQRIHYIHNQILDYFYYAEEVWFDYSE 310 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCC-----------cHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 00000011111111111 115899999987633211111 12347778999999998999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh-------h---
Q 005434 471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA-------L--- 540 (697)
Q Consensus 471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~-------~--- 540 (697)
.+...++-+.|.++.++++ .-+|. |-..+...+.-.. |-+.++..|++|+..+.. +
T Consensus 311 Y~~~isd~q~al~tv~rg~-~~sps---L~~~lse~yel~n----------d~e~v~~~fdk~~q~L~r~ys~~~s~~~s 376 (660)
T COG5107 311 YLIGISDKQKALKTVERGI-EMSPS---LTMFLSEYYELVN----------DEEAVYGCFDKCTQDLKRKYSMGESESAS 376 (660)
T ss_pred HHhhccHHHHHHHHHHhcc-cCCCc---hheeHHHHHhhcc----------cHHHHhhhHHHHHHHHHHHHhhhhhhhhc
Confidence 9999999999999999988 55555 4444443333221 345666667766642110 0
Q ss_pred -------h-----------hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434 541 -------E-----------SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA 600 (697)
Q Consensus 541 -------~-----------~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A 600 (697)
. -.-+|..++++..+.. +.++++|.++.+.. -..+..-+..+|+++. ..++..-|
T Consensus 377 ~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~----~~~h~vyi~~A~~E~~-~~~d~~ta 451 (660)
T COG5107 377 KVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG----IVGHHVYIYCAFIEYY-ATGDRATA 451 (660)
T ss_pred cccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC----CCCcceeeeHHHHHHH-hcCCcchH
Confidence 0 0125666666655433 56788888876431 1122344566777764 46788888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHH
Q 005434 601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVY 678 (697)
Q Consensus 601 R~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy 678 (697)
-.||+-++...|.+..+--+|..+-...+ +-+.||.+||.++....++ ..+|..|+++|...|+..++..+-
T Consensus 452 ~~ifelGl~~f~d~~~y~~kyl~fLi~in------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 452 YNIFELGLLKFPDSTLYKEKYLLFLIRIN------DEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhC------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 99999999988888888888888887777 7799999999999877644 699999999999999999999999
Q ss_pred HHHHhhcCCc---cccccCCC
Q 005434 679 WRARKTLKDS---TALTALPD 696 (697)
Q Consensus 679 ~ral~~~~~~---~~f~~~~~ 696 (697)
+|-...+|.+ ..|.+.|+
T Consensus 526 ~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 526 ERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHcCcHhHHHHHHHHHh
Confidence 9988888755 37777664
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=7.5e-17 Score=193.66 Aligned_cols=448 Identities=11% Similarity=-0.014 Sum_probs=341.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+..++++++..+|++...|...+..+...| ..++...|++++...|.++..|...+.... ..|+++.|..+|+++
T Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 455678889999999999999999998887777 568999999999999999999999999885 789999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
+...|.+...|..++.+....+....+...+ ..... .+|. +...+ ..
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~---~~~~--~~~~~---------------------------~~ 572 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWL-EKAAE---LNPQ--EIEPA---------------------------LA 572 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH---hCcc--chhHH---------------------------HH
Confidence 9999998899998888876654433333211 11100 0000 00000 00
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
........++.+.|..+|+.++...|.+...|..+...+..-+ ..+.+...++++++..|+++..|..++..+..
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 647 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG---DLNKAVSSFKKLLALQPDSALALLLLADAYAV-- 647 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--
Confidence 0111112335678999999999988888888888777775433 35778889999999999999999999888764
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
.++.+.|..+|+++++..|+.. .|...+..... .+..+.+..+++.+...
T Consensus 648 -----------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 648 -----------MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA------------------AKRTESAKKIAKSLQKQ 698 (899)
T ss_pred -----------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence 4789999999999999888754 55555444332 24578899999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
.|.++..|...+..+...|++++|...+++++ ...|++ ..+...+......| +.+++.+.++++++..
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g----------~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASG----------NTAEAVKTLEAWLKTH 766 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999 677877 56666666665555 3678888899999877
Q ss_pred ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCH
Q 005434 538 SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGL 615 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~ 615 (697)
|.. ..++...+..+...+ +.+...|++++...+. ...+...........|+ .+|...|++++...|.+.
T Consensus 767 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 767 PND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred CCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 654 344554455444434 5778888888764321 12222222223345566 889999999999999888
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434 616 VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRAR 682 (697)
Q Consensus 616 ~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral 682 (697)
.++..++.+....+ +++.|..+|+++++..|.++.++..++..-...|+.+.|..++++++
T Consensus 838 ~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 838 AILDTLGWLLVEKG------EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888888888 89999999999999988999999999999999999999999999876
No 15
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.80 E-value=1e-17 Score=189.44 Aligned_cols=247 Identities=19% Similarity=0.286 Sum_probs=208.1
Q ss_pred HHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-CCCc----HHHHHHHHHH
Q 005434 398 QVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-GCLT----EDIAHRYVTL 471 (697)
Q Consensus 398 ~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-~~~~----~~lw~~y~~l 471 (697)
+-|++-+...|.+. +|..|..|..+ ...+++||.+.++|+.. |+.. -.+|+.|.++
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~Le------------------lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLE------------------LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhh------------------hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence 45677777888776 89999988664 35689999999999986 5543 2599999999
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHH
Q 005434 472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALK 551 (697)
Q Consensus 472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~ 551 (697)
+.-.|.-+...++++||+ ++-+...++.....+....+. .+.+-++|+..++.+. ...++|.+|++
T Consensus 1507 En~yG~eesl~kVFeRAc--qycd~~~V~~~L~~iy~k~ek----------~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERAC--QYCDAYTVHLKLLGIYEKSEK----------NDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred HHhhCcHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHhhc----------chhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence 999998888999999999 344556777777777766543 4666777888888775 34799999999
Q ss_pred HHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccC
Q 005434 552 FFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA 629 (697)
Q Consensus 552 ~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~ 629 (697)
++.++. +.++.++++|++.+++.. +..+...++..+++.|+-+++|.+|+-.+...|...++|+-||++|.+++
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence 998876 468999999999876643 66777778888999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHhhCC---CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 630 SVGDKDSLVNARKLFESALATYD---QNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 630 ~~~~~~~~~raR~lye~al~~~~---~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
+++.+|.+|||++...- +...++..|.++|..+||.+++..|-.||+..+.
T Consensus 1649 ------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1649 ------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred ------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Confidence 89999999999998754 4569999999999999999999999999998774
No 16
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.77 E-value=3.9e-17 Score=184.84 Aligned_cols=212 Identities=19% Similarity=0.272 Sum_probs=184.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhcccCCCCCCccch
Q 005434 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKADI 523 (697)
Q Consensus 448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~~~~~~~ 523 (697)
-+-|++.+..+|.+.-+|+.|..+.++.+.++.||++.++|+...+|.. ..+|..|++++..+|+ -
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~----------e 1513 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT----------E 1513 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc----------H
Confidence 3568888889999999999999999999999999999999997777753 5799999999999885 4
Q ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 524 LSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 524 ~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
+.+.++|++|.+-+.+ ..++...+.++.... +.+..+|+.+++.+.+ ...+|..|++++.+...-++||
T Consensus 1514 esl~kVFeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHH
Confidence 7788899999987754 345555555554333 4677888888877652 5789999999999999999999
Q ss_pred HHHHHHHhCCCC--CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434 602 EMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW 679 (697)
Q Consensus 602 ~iy~~~i~~~p~--~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ 679 (697)
.+.++|+...|. ..++..++|+||.+.| +.+|+|.+||..+..+|+..++|.-|++.|.++|+.+.+|.+|+
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~G------DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYG------DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcC------CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999999888 4679999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 005434 680 RARKT 684 (697)
Q Consensus 680 ral~~ 684 (697)
|++.-
T Consensus 1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred HHHhc
Confidence 99853
No 17
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.76 E-value=1.2e-15 Score=155.33 Aligned_cols=406 Identities=13% Similarity=0.175 Sum_probs=278.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434 151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (697)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW 229 (697)
++-+|+++.-|.+.+++....+ +.+++.+|++.+.-+|-.+..|..|+.-|+ ..+++..+..+|-|||...-. .+||
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL-A~~df~svE~lf~rCL~k~l~-ldLW 112 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL-ARKDFRSVESLFGRCLKKSLN-LDLW 112 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh-hhhhHHHHHHHHHHHHhhhcc-HhHH
Confidence 6789999999999999998876 678999999999999999999999999998 678999999999999987654 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhh
Q 005434 230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL 309 (697)
Q Consensus 230 ~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (697)
..|+..--+..+ ++.+. .-
T Consensus 113 ~lYl~YIRr~n~--------~~tGq-----------------------------------------------------~r 131 (660)
T COG5107 113 MLYLEYIRRVNN--------LITGQ-----------------------------------------------------KR 131 (660)
T ss_pred HHHHHHHHhhCc--------ccccc-----------------------------------------------------hh
Confidence 999854321100 00000 00
Q ss_pred hHHHHHHHHHHhcC---CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCc
Q 005434 310 RVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (697)
Q Consensus 310 ~~a~~iy~~al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~ 386 (697)
...-..|+--+..+ |.+-.+|..|.++++..+.. ..| +.
T Consensus 132 ~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~---------------------~kw------Ee----------- 173 (660)
T COG5107 132 FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEEL---------------------GKW------EE----------- 173 (660)
T ss_pred hhhHHHHHHHHhcccccccccchHHHHHHHHHhcccc---------------------ccH------HH-----------
Confidence 11223444444432 44556888888777554311 112 11
Q ss_pred CccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-------
Q 005434 387 DIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM------- 457 (697)
Q Consensus 387 ~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~------- 457 (697)
+.++++.|..|.+||..--. .+||..|-.|+........-. .+. ...-..-.||..|++....
T Consensus 174 ---Qqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarK-fvg----e~sp~ym~ar~~yqe~~nlt~Gl~v~ 245 (660)
T COG5107 174 ---QQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARK-FVG----ETSPIYMSARQRYQEIQNLTRGLSVK 245 (660)
T ss_pred ---HHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHH-Hhc----ccCHHHHHHHHHHHHHHHHhcccccc
Confidence 36789999999999976332 249999999987632110000 000 0012234566666654321
Q ss_pred CC-----------CcHHHHHHHHHHHHhcCC------HHH-HHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 458 GC-----------LTEDIAHRYVTLYLQLGK------LDE-ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 458 ~~-----------~~~~lw~~y~~l~~~~~~------~~~-A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
+| .+.+-|+.|++++...|- +.+ .--++..++ .-+|-+.++|..|-...+..+
T Consensus 246 ~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~-~y~~~~~evw~dys~Y~~~is-------- 316 (660)
T COG5107 246 NPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQIL-DYFYYAEEVWFDYSEYLIGIS-------- 316 (660)
T ss_pred CchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHhhcc--------
Confidence 22 134569999999987642 232 334678888 788999999999998877554
Q ss_pred ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhC-------C--CCC----------
Q 005434 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKD-------G--GGE---------- 578 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~-------~--~~~---------- 578 (697)
|-+++..+-++++.-+|. |=..+.++++... +.+...|+++++.+... . +++
T Consensus 317 --d~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 317 --DKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred --HHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH
Confidence 457777777777665553 2233455554332 33444455554443210 0 000
Q ss_pred -----CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434 579 -----SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (697)
Q Consensus 579 -----~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~ 653 (697)
...-+|+.|+..+.+..|++.||++|.++.+.+-.+..+|+.++.+|.... .+..-|-.+||.++..+|+
T Consensus 390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----~d~~ta~~ifelGl~~f~d 464 (660)
T COG5107 390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----GDRATAYNIFELGLLKFPD 464 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----CCcchHHHHHHHHHHhCCC
Confidence 011235568888899999999999999999987677788888888886543 1778999999999999999
Q ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 654 NTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
++-+-..|..|....|+.++|+.+|+.++..+.
T Consensus 465 ~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 465 STLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999998887764
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=1.3e-13 Score=169.30 Aligned_cols=486 Identities=11% Similarity=-0.002 Sum_probs=264.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHH----------------HHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKY----------------MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y----------------~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~ 202 (697)
...+...+++++...|++...|... +......| +..+..+|++++..+|.++.+=+.|.....
T Consensus 78 ~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~ 157 (1157)
T PRK11447 78 SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA 157 (1157)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh
Confidence 3456677777788888777766432 22333334 457777888888777776654333333222
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhcccc------
Q 005434 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGL------ 276 (697)
Q Consensus 203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~------ 276 (697)
...++.+.|+..|++.++.+|++..++..+.++....+...++...+-.. ....+. .......|.......
T Consensus 158 ~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~-~~~~~~--~~~aa~~~~~~l~~~~~~~~~ 234 (1157)
T PRK11447 158 KLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM-AKSPAG--RDAAAQLWYGQIKDMPVSDAS 234 (1157)
T ss_pred hCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-hhCCCc--hHHHHHHHHHHHhccCCChhh
Confidence 24577788888888888888887778877777765544333332211111 000000 000111221110000
Q ss_pred ------CC-CCCCCCCCCCC----CCC--------cc--hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 005434 277 ------FM-PLDGEVENTDG----SQP--------EN--MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335 (697)
Q Consensus 277 ------~~-~~~~~~~~~~~----~~~--------~~--~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~ 335 (697)
++ .+++ ++.. ..+ .+ .........+...+.+.|...|+++++..|++.+.+..+-.
T Consensus 235 ~~~l~~~l~~~p~---~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~ 311 (1157)
T PRK11447 235 VAALQKYLQVFSD---GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ 311 (1157)
T ss_pred HHHHHHHHHHCCC---chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 00 0000 0000 000 00 00000112233345789999999999999998887777666
Q ss_pred HHHHccccCcHHHHHHHHHHHHhhCCCChh--hHHHH------------HHhhcccCCCCCCCCcCccchHHHHHHHHHH
Q 005434 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWL------------ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYE 401 (697)
Q Consensus 336 ~~~~fe~~~~~~~~~~il~~~~~~~p~~~~--~w~~~------------a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye 401 (697)
.+..-+ ..+.+...++++++..|+++. .|..+ +...+. .++++.|...|+
T Consensus 312 ~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~-------------~g~~~eA~~~~~ 375 (1157)
T PRK11447 312 AYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK-------------ANNLAQAERLYQ 375 (1157)
T ss_pred HHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH-------------CCCHHHHHHHHH
Confidence 665433 357788899999999998743 23221 222222 356778888888
Q ss_pred HHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH-----------
Q 005434 402 EALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV----------- 469 (697)
Q Consensus 402 ~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~----------- 469 (697)
+++...|... .+......... .+..+.|...|++++..+|.+...+...+
T Consensus 376 ~Al~~~P~~~~a~~~Lg~~~~~------------------~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 376 QARQVDNTDSYAVLGLGDVAMA------------------RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 8888777543 22111111111 23345555555555555555443332222
Q ss_pred -------------------------------HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434 470 -------------------------------TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (697)
Q Consensus 470 -------------------------------~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~ 518 (697)
..+...|++++|...+++++ ...|++..++.....+....+
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P~~~~~~~~LA~~~~~~G------- 509 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDPGSVWLTYRLAQDLRQAG------- 509 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC-------
Confidence 22233456666666666666 556666555555555554444
Q ss_pred CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHH---------------------------------
Q 005434 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKL--------------------------------- 563 (697)
Q Consensus 519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l--------------------------------- 563 (697)
+.+++...|++++...|.. ...+..+..++...+ +.+...
T Consensus 510 ---~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 510 ---QRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred ---CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 2455555566655543322 122221111111110 000000
Q ss_pred ----HHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHH
Q 005434 564 ----VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVN 639 (697)
Q Consensus 564 ----~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~r 639 (697)
++.|+..+...+ ....+......++...|++++|...|++++...|.+...+...+.+-...+ +.+.
T Consensus 585 ~~G~~~eA~~~l~~~p---~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g------~~~e 655 (1157)
T PRK11447 585 DSGKEAEAEALLRQQP---PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG------DLAA 655 (1157)
T ss_pred HCCCHHHHHHHHHhCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC------CHHH
Confidence 111222222111 133344445666777888888888888888888888887777777776776 7778
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 640 ARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 640 aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
|++.|+.++...|.++.++..........|+.+.|..+|++++...++
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 888888777776677777777777667778888888888887776543
No 19
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.75 E-value=6.4e-14 Score=149.35 Aligned_cols=440 Identities=15% Similarity=0.166 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
.+.-++.+|...|.++|-....|.+|++++.+.|. ..+.++|+|+++..|.+..+|+.|..+....+|+-+..|..|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45788899999999999999999999999999874 67899999999999999999999999998888999999999999
Q ss_pred hhhhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434 218 GLRVCPT---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (697)
Q Consensus 218 ~l~~~p~---~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (697)
|...+.. +..+|..|+++|.....
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks----------------------------------------------------- 166 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS----------------------------------------------------- 166 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc-----------------------------------------------------
Confidence 9999985 67999999999943211
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCc-h-HHHHHHHHHHHHcccc--CcHHHHHHHHHHHH----hhCCCC-hh
Q 005434 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSS-F-NLRQRFFEIVEATNLA--QSDDMHDKILSDMQ----RDFLVD-PK 365 (697)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~-~-~~~~~~~~~~~~fe~~--~~~~~~~~il~~~~----~~~p~~-~~ 365 (697)
.+.+..||++.++. |.. . .+...|.+.+...+.. ...+.+..+-.... ..|... .+
T Consensus 167 --------------~k~v~~iyeRilei-P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e 231 (577)
T KOG1258|consen 167 --------------WKRVANIYERILEI-PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE 231 (577)
T ss_pred --------------HHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence 12333444444432 111 0 0111111111111100 00001111000000 001111 01
Q ss_pred hHHHHHHhhcccCCCCCCCCcC-cc--------------chHHHHHHHHHHHHhhcC-----C--ch--hHHHHHHHHHH
Q 005434 366 YWDWLARLKMTDSVSKDGTSED-IV--------------PSQMQKAIQVYEEALKNV-----P--SS--MIFDLYTKFLM 421 (697)
Q Consensus 366 ~w~~~a~~~l~~~~~~~~~~~~-~~--------------~~~~~~a~~vye~al~~~-----~--~~--~lw~~yi~~~~ 421 (697)
.|-...+.-.. +....+.. +. .......+..|+.+++.- | +. .-|..|+.|++
T Consensus 232 ~~~~~v~~~~~---~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i 308 (577)
T KOG1258|consen 232 ELEIGVKDSTD---PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI 308 (577)
T ss_pred HHHHHHhhccC---ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh
Confidence 11000000000 00000000 00 112234556667776642 1 11 27999999877
Q ss_pred HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (697)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (697)
. .++.+++...|++|+......+++|+.|+.+++..|+.+-|..++.++++-.+|+.+.+-.
T Consensus 309 ~------------------~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 309 T------------------LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred h------------------cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 5 3557899999999998877789999999999999999999999999999667888888888
Q ss_pred HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCC
Q 005434 502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGES 579 (697)
Q Consensus 502 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~ 579 (697)
.+..++...|+ +..++.++++.....|+-. .+=..++.++...+ +.+.. ......... .+..+
T Consensus 371 ~~a~f~e~~~n----------~~~A~~~lq~i~~e~pg~v--~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~--~~~~~ 435 (577)
T KOG1258|consen 371 LEARFEESNGN----------FDDAKVILQRIESEYPGLV--EVVLRKINWERRKGNLEDANY-KNELYSSIY--EGKEN 435 (577)
T ss_pred HHHHHHHhhcc----------HHHHHHHHHHHHhhCCchh--hhHHHHHhHHHHhcchhhhhH-HHHHHHHhc--ccccC
Confidence 88888887764 6778888999888786532 22223444444433 22221 111221111 11122
Q ss_pred CCChHHHHHHHHH----HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--C
Q 005434 580 GFSLPSAIINLVI----QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--Q 653 (697)
Q Consensus 580 ~~~l~~~yl~~~~----~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~ 653 (697)
...+...|+++.. -.++.+.|+.++..++...|++..+|..++.|+...++.. +.+-.--+....+.... +
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~---e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR---EYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch---hhhhhhhHHHHHHhhhcccc
Confidence 3333445666643 3578999999999999999999999999999998876431 33333333333333222 2
Q ss_pred Cc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 654 NT-SLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 654 ~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
++ ..=..|++|-.-.|....+.+-..+.++.+
T Consensus 513 ~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 513 DSRSSTDKYIEFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred ccccchHHHHHHHHhccchhHhHhhchHHHHHH
Confidence 22 222227777777777666655555554443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.71 E-value=7.1e-13 Score=152.69 Aligned_cols=220 Identities=11% Similarity=0.022 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.|...|++++..+|.....|+..+.++...|++++|...+++++ ...|++..+|.....+....|
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~lg~~~~~~g---------- 413 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL-KLNSEDPDIYYHRAQLHFIKG---------- 413 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------
Confidence 456777888888888778777778777777777888888888888887 677777777777777666555
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~ 599 (697)
+.+.+...|++++...|.. ...|...+..+...+ +.+...|++++...+. ...++..+...+...|++++
T Consensus 414 ~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHccCHHH
Confidence 3677777788887766533 233443333332222 4566677777654321 23344444555566778888
Q ss_pred HHHHHHHHHhCCCCCHH-------HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434 600 AREMYKRFLALPRPGLV-------LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE 672 (697)
Q Consensus 600 AR~iy~~~i~~~p~~~~-------~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (697)
|.+.|++++...|.... ++...+.+....+ +++.|..+|++++...|.+...|...++.....|+.+
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~------~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ------DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 88888888887664322 1111122222234 7778888888888877766677777788777888888
Q ss_pred hHHHHHHHHHhhcC
Q 005434 673 TATAVYWRARKTLK 686 (697)
Q Consensus 673 ~a~~vy~ral~~~~ 686 (697)
.|...|++|++..+
T Consensus 560 eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 560 EALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888876654
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=9e-13 Score=161.84 Aligned_cols=400 Identities=14% Similarity=0.065 Sum_probs=277.7
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE--ELWVEYLRMELTYLNKLKARKVAL 250 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~--~lW~~y~~~E~~~~~~~~~r~~~l 250 (697)
...+...|++++..+|+++.+|...+.... ..|+.+.|+..|+++++..|++. .-|..++..-.-+.... .
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~------~ 357 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ------Q 357 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH------H
Confidence 467899999999999999999999999886 79999999999999999999754 34654432111000000 0
Q ss_pred ccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHH
Q 005434 251 GEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLR 330 (697)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~ 330 (697)
+. ..+..++.+.|...|+++++..|++...+
T Consensus 358 g~-------------------------------------------------~~~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 358 GD-------------------------------------------------AALKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred HH-------------------------------------------------HHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 00 00111245789999999999999887766
Q ss_pred HHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch
Q 005434 331 QRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS 410 (697)
Q Consensus 331 ~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~ 410 (697)
..+-.++..-+ ..+.+...++++++..|++...+..++..+.. ...++|...++......+..
T Consensus 389 ~~Lg~~~~~~g---~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------------~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 389 LGLGDVAMARK---DYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------------QSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------cCHHHHHHHHHhCCHHHHHH
Confidence 66655554432 46789999999999999999888888887643 33566766665432211110
Q ss_pred h------H-HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 005434 411 M------I-FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK 483 (697)
Q Consensus 411 ~------l-w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~ 483 (697)
. + ...+...-. .+ ...+..+.|...|++++..+|.++.++...+.++...|++++|..
T Consensus 452 ~~~~~~~l~~~~~~~~a~-~~--------------~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAE-AL--------------ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHhhhhHHHHHHH-HH--------------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 0 011111000 00 013567899999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHH---------------------------------
Q 005434 484 LAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL--------------------------------- 530 (697)
Q Consensus 484 l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f--------------------------------- 530 (697)
++++++ ...|.+...+..+..+....+. .+.+...+
T Consensus 517 ~l~~al-~~~P~~~~~~~a~al~l~~~~~----------~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 517 LMRRLA-QQKPNDPEQVYAYGLYLSGSDR----------DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999 7889988887765544332221 11111111
Q ss_pred ----HHHHh---hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 531 ----KCILT---KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 531 ----~~al~---~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
++|+. ..|. ...++...+..+...+ +.+...|++++..-+. ........+..+...|+.++|+
T Consensus 586 ~G~~~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 586 SGKEAEAEALLRQQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred CCCHHHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHH
Confidence 11111 1222 2344555555555444 5677888888764221 2334444555567789999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHhcCChhhHH
Q 005434 602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTETKLGTSETAT 675 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~------~lW~~y~~fE~~~G~~~~a~ 675 (697)
+.|++++...|.+...+...+......+ +.+.|.++|++++...+.++ .++.....+....|+.+.|.
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALG------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999988888877777777766777 89999999999999876433 47777899999999999999
Q ss_pred HHHHHHHhhc
Q 005434 676 AVYWRARKTL 685 (697)
Q Consensus 676 ~vy~ral~~~ 685 (697)
..|++|+...
T Consensus 732 ~~y~~Al~~~ 741 (1157)
T PRK11447 732 ETYKDAMVAS 741 (1157)
T ss_pred HHHHHHHhhc
Confidence 9999998644
No 22
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=8e-13 Score=144.44 Aligned_cols=393 Identities=13% Similarity=0.162 Sum_probs=257.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CCHHHHHHHHHHh
Q 005434 149 LAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN------LNVTAARALMQNG 218 (697)
Q Consensus 149 ral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~------~~~~~aR~~~~r~ 218 (697)
.+...+|-+..+|+.|+.-+.... ...+...|+++| .+-+++.+|..++.|..... +++...|.+|.|+
T Consensus 138 ~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ra 216 (881)
T KOG0128|consen 138 EMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERA 216 (881)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhccccccccccchhhhHHHHHH
Confidence 345678999999999998765432 246889999999 45567999999999987422 3578899999999
Q ss_pred hhhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434 219 LRVCPT----SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (697)
Q Consensus 219 l~~~p~----~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (697)
|+.... ...+|..|.+||..+....+.|+
T Consensus 217 l~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q----------------------------------------------- 249 (881)
T KOG0128|consen 217 LRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ----------------------------------------------- 249 (881)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH-----------------------------------------------
Confidence 998863 34899999999988765433222
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (697)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~ 374 (697)
+...|...+.. | .+.-...++++..+.. +++..+.... + .
T Consensus 250 -----------------v~a~~~~el~~-~--~D~~~~~~~~~~~sk~--------h~~~~~~~~~-~-----~------ 289 (881)
T KOG0128|consen 250 -----------------VIALFVRELKQ-P--LDEDTRGWDLSEQSKA--------HVYDVETKKL-D-----D------ 289 (881)
T ss_pred -----------------HHHHHHHHHhc-c--chhhhhHHHHHHHHhc--------chHHHHhccH-H-----H------
Confidence 22333333332 2 1222223333322210 1111111100 0 0
Q ss_pred cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (697)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~ 453 (697)
...+..+-+..|++-++..++.. .|..|++|+... +...+...++++
T Consensus 290 --------------a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~------------------G~p~ri~l~~eR 337 (881)
T KOG0128|consen 290 --------------ALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS------------------GDPVRIQLIEER 337 (881)
T ss_pred --------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc------------------CCchHHHHHHHH
Confidence 01223344556666666666544 899999999863 345677888999
Q ss_pred HHHcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434 454 AEAMGCLTEDIAHRYVTLYLQ-LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (697)
Q Consensus 454 al~~~~~~~~lw~~y~~l~~~-~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 532 (697)
++...+.+.++|+.|..++-. .+-.+.+..++-+++ +.||...+||.+++--..+... +.+.+...+++
T Consensus 338 ~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re---------~~~vI~~~l~~ 407 (881)
T KOG0128|consen 338 AVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNRE---------EITVIVQNLEK 407 (881)
T ss_pred HHHhccccHHHHhhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCc---------chhhHHHHHHH
Confidence 999999999999998765433 234455566788899 8999999999999833334433 35667777888
Q ss_pred HHhhcChhhhHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhhhhCCCC--CCCCChHHHHHHHHH-HhCCHHHHH
Q 005434 533 ILTKVSALESESLWLMALKFFMNQK--------HYFDKLVEIALISVAKDGGG--ESGFSLPSAIINLVI-QKDGIQQAR 601 (697)
Q Consensus 533 al~~~p~~~~~~lW~~y~~~~~~~~--------~~~~~l~~~a~~~~~~~~~~--~~~~~l~~~yl~~~~-~~~~~~~AR 601 (697)
++... ..+...|+-|..... +.++..|..|...+....+. .....+-..++..+. ..++.+.||
T Consensus 408 ~ls~~-----~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R 482 (881)
T KOG0128|consen 408 DLSMT-----VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAR 482 (881)
T ss_pred HHHHH-----HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhh
Confidence 77532 223444444433322 24677788877665443211 001112223344433 458899999
Q ss_pred HHHHHHHhCCCCCHH-HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--Cc-hHHHHHHHHHHhcCChhhHHHH
Q 005434 602 EMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--NT-SLWRDYYSTETKLGTSETATAV 677 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~-~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~~-~lW~~y~~fE~~~G~~~~a~~v 677 (697)
.|....+.....+.- .|+.|+.+|...+ +...+|.++.+|...... +. .+...|..||+.+|+.+....+
T Consensus 483 ~iWn~imty~~~~iag~Wle~~~lE~~~g------~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 483 EIWNFIMTYGGGSIAGKWLEAINLEREYG------DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HhhhccccCCcchHHHHHHHHHhHHHHhC------CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 999888877666666 8999999999988 889999988888876542 22 7999999999999999877665
Q ss_pred HHHHH
Q 005434 678 YWRAR 682 (697)
Q Consensus 678 y~ral 682 (697)
-++-+
T Consensus 557 ~~~~~ 561 (881)
T KOG0128|consen 557 PEKVL 561 (881)
T ss_pred HHhhc
Confidence 44433
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=1.1e-11 Score=145.79 Aligned_cols=424 Identities=9% Similarity=-0.036 Sum_probs=282.9
Q ss_pred cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (697)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y 232 (697)
.|-+...---|+....-.| ...+..++.++....|.....|...+.... ..|+...|..++++++...|.+...|...
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444444444444444445 457788999998888888888999988885 78999999999999999999888877654
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (697)
Q Consensus 233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (697)
+.+.... ...+.|
T Consensus 90 a~~l~~~-------------------------------------------------------------------g~~~eA 102 (765)
T PRK10049 90 ILTLADA-------------------------------------------------------------------GQYDEA 102 (765)
T ss_pred HHHHHHC-------------------------------------------------------------------CCHHHH
Confidence 4332210 123567
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (697)
Q Consensus 313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~ 392 (697)
...++++++..|++.. +..+-.++..-+ ....+...++++++..|+++..+..++..... .+.
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g---~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-------------~~~ 165 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAG---RHWDELRAMTQALPRAPQTQQYPTEYVQALRN-------------NRL 165 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------CCC
Confidence 8888888888888877 666655554432 35778889999999999999998888887653 255
Q ss_pred HHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHH-----
Q 005434 393 MQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI----- 464 (697)
Q Consensus 393 ~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~l----- 464 (697)
.+.|...++.++. .|... .+........-.+.....+. ..-...++|...|+.++...|.+++.
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~-------~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK-------ERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh-------HHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 6778888877665 33210 11111111111110000000 00112377899999998653333222
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434 465 --AHRYVTLYLQLGKLDEARKLAAKLCSGK---LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 465 --w~~y~~l~~~~~~~~~A~~l~~~al~~~---~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
.+..+-.+...|++++|+..+++++ .. .|.....|.. .+....+ +.+++...|++++..-|.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll-~~~~~~P~~a~~~la--~~yl~~g----------~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLK-AEGQIIPPWAQRWVA--SAYLKLH----------QPEKAQSILTELFYHPET 304 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCCHHHHHHHH--HHHHhcC----------CcHHHHHHHHHHhhcCCC
Confidence 2222233456789999999999998 44 3666777753 3444444 468888899998864432
Q ss_pred h--hhHHHHHHHH-HHHH-hhhHHHHHHHHHHHHhhhhCCC----CCCC-----CChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434 540 L--ESESLWLMAL-KFFM-NQKHYFDKLVEIALISVAKDGG----GESG-----FSLPSAIINLVIQKDGIQQAREMYKR 606 (697)
Q Consensus 540 ~--~~~~lW~~y~-~~~~-~~~~~~~~l~~~a~~~~~~~~~----~~~~-----~~l~~~yl~~~~~~~~~~~AR~iy~~ 606 (697)
. .....+..+. -++. .+-+.+..+++++....++... .... ..........+...|+.++|.+++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 0112222111 1111 2225566677776654321100 0000 11222344556678999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 607 ~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
++...|.+..++...+.+....+ ..+.|.+++++++...|+++.++...+......|+.+.|..++.++++..|
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g------~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARG------WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998888 899999999999999999999999999999999999999999999999988
Q ss_pred Ccc
Q 005434 687 DST 689 (697)
Q Consensus 687 ~~~ 689 (697)
++.
T Consensus 459 d~~ 461 (765)
T PRK10049 459 QDP 461 (765)
T ss_pred CCH
Confidence 663
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.63 E-value=3.2e-13 Score=142.57 Aligned_cols=378 Identities=13% Similarity=0.036 Sum_probs=219.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH
Q 005434 149 LAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (697)
Q Consensus 149 ral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~ 227 (697)
-++++.|.-.+....|++..+..| ...+...|..++...|+....|+..+.-.. .+|+.+.|-..|..+|+.+|+..-
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcchhh
Confidence 578889998999999999888877 568999999999999999999999988886 799999999999999999996311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (697)
Q Consensus 228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (697)
.-. ..++-+ + .++
T Consensus 186 a~s-------~lgnLl---------------------------k---------------------------------a~G 198 (966)
T KOG4626|consen 186 ARS-------DLGNLL---------------------------K---------------------------------AEG 198 (966)
T ss_pred hhc-------chhHHH---------------------------H---------------------------------hhc
Confidence 000 001000 0 001
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (697)
Q Consensus 308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~ 387 (697)
.+..|...|.+|+++.|.-.-.|..+--.| ......-.+.+-++++++..|+=...++.++..+-+
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f---~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke----------- 264 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVF---NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE----------- 264 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHH---hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-----------
Confidence 235678889999988775222233332222 211122344445666777777666666666665533
Q ss_pred ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
.+.+++|...|++|+..-|... ..|-++-- .+ -.++.++-|...|++|++..|..++.++.
T Consensus 265 --~~~~d~Avs~Y~rAl~lrpn~A--~a~gNla~-iY--------------yeqG~ldlAI~~Ykral~~~P~F~~Ay~N 325 (966)
T KOG4626|consen 265 --ARIFDRAVSCYLRALNLRPNHA--VAHGNLAC-IY--------------YEQGLLDLAIDTYKRALELQPNFPDAYNN 325 (966)
T ss_pred --HhcchHHHHHHHHHHhcCCcch--hhccceEE-EE--------------eccccHHHHHHHHHHHHhcCCCchHHHhH
Confidence 2556777777777777666532 01111000 00 02456777888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~ 547 (697)
.+.-+...|+..+|...|.+|+ .-+|+-.+--.....+.-..+ .++.+..+|++|+...|.-.. -..
T Consensus 326 lanALkd~G~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~----------~~e~A~~ly~~al~v~p~~aa--a~n 392 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQG----------KIEEATRLYLKALEVFPEFAA--AHN 392 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhc----------cchHHHHHHHHHHhhChhhhh--hhh
Confidence 8877777788888888888888 677765444333333322222 256666667777765553210 000
Q ss_pred HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005434 548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNCI 622 (697)
Q Consensus 548 ~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i 622 (697)
-.+..+..++ +.+-.-|+.|+.+ .+....+|... +...|+.+.|-+.|++||...|.-.+.+...+
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI---------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRI---------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhc---------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 0011111111 2233334444321 23333344333 33445555555555555555544444444444
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 623 ELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 623 ~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
.+....| ++..|-.-|+.|+...|+.+
T Consensus 464 si~kDsG------ni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 464 SIYKDSG------NIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHhhccC------CcHHHHHHHHHHHccCCCCc
Confidence 4444444 44555555555555544443
No 25
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.2e-11 Score=128.64 Aligned_cols=441 Identities=14% Similarity=0.114 Sum_probs=242.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHh-------------c--------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 005434 151 VMRFKGDIELWFKYMEFCRQR-------------K--------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209 (697)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~-------------~--------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~ 209 (697)
+.+-.....=.+.||+++... | ..++-.+|.+|+..++.++++|..|+.|.. ..++..
T Consensus 44 L~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~ 122 (568)
T KOG2396|consen 44 LQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYG 122 (568)
T ss_pred HccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hhcchh
Confidence 333334566677888885320 1 235668999999999999999999999995 777899
Q ss_pred HHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434 210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG 289 (697)
Q Consensus 210 ~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 289 (697)
..-++|.++|+.||+++.||+..+..|...+
T Consensus 123 ~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n------------------------------------------------- 153 (568)
T KOG2396|consen 123 EVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN------------------------------------------------- 153 (568)
T ss_pred HHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-------------------------------------------------
Confidence 9999999999999999999999998886521
Q ss_pred CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCCh-----
Q 005434 290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP----- 364 (697)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~----- 364 (697)
.+.+.||.+|.+++..+|+++.+|..|+++.-.|-. ....+. ........+.
T Consensus 154 -----------------~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~---Kl~~rr---~~~g~~~~~~~~eie 210 (568)
T KOG2396|consen 154 -----------------LNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAE---KLRNRR---EELGLDSSDKDEEIE 210 (568)
T ss_pred -----------------cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH---HHHHHH---HHhccccchhHHHHH
Confidence 024678999999999999999999999988765521 000000 0011000000
Q ss_pred ---hhHHHHHHhhcccCCCCCCCCcCccchHHHHH----HHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCC
Q 005434 365 ---KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKA----IQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL 436 (697)
Q Consensus 365 ---~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a----~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~ 436 (697)
..|...+.-.-.....-...+ .+.....+.+ ..+++---...|+.. +|..-+.-+...+.........+.+
T Consensus 211 ~ge~~~~~~~~s~~~~~~~~k~~e-~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~ 289 (568)
T KOG2396|consen 211 RGELAWINYANSVDIIKGAVKSVE-LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQA 289 (568)
T ss_pred HHHHHHHhhccchhhhhcchhhcc-hHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhh
Confidence 011111000000000000000 0000011111 112211111123333 6665544433322111100000000
Q ss_pred Cch-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434 437 PSH-VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (697)
Q Consensus 437 ~~~-~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (697)
... .....++...+|+.++.. ..+..+|-.|+.+....-. +.....+++++. ...--...+-..|..+.+.
T Consensus 290 ~~~~~~~k~s~~~~v~ee~v~~-l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~-~~~~l~~~~~~~ys~~~l~ 367 (568)
T KOG2396|consen 290 KAVEVGSKESRCCAVYEEAVKT-LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAH-ELKLLSECLYKQYSVLLLC 367 (568)
T ss_pred hchhcchhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhcccccchHHHHHHHHHH
Confidence 000 113456788999999986 4568999999988765422 222333445444 2212223334444444433
Q ss_pred hcccCCCCCCccchHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHH
Q 005434 510 CVTRNSFSPSKADILSIFELLKCIL-TKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAII 588 (697)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~f~~al-~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl 588 (697)
..+. ...+++-++.+ ..+ .++.++|..++..+......+.-+|+.+-....+.. ....+..+.
T Consensus 368 ~~t~----------~~~r~~a~~l~~e~f--~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~----~s~~~~~w~ 431 (568)
T KOG2396|consen 368 LNTL----------NEAREVAVKLTTELF--RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV----CSELLISWA 431 (568)
T ss_pred Hhcc----------chHhHHHHHhhHHHh--cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh----cchhHHHHH
Confidence 3221 11211111211 111 235789998877655333244444444333222221 112222333
Q ss_pred HHHHHh-CCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434 589 NLVIQK-DGIQQAREMYKRFLALP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET 666 (697)
Q Consensus 589 ~~~~~~-~~~~~AR~iy~~~i~~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~ 666 (697)
.+..+. -+...---|+..+++.- |....+-..|.++-+..+ ....||+.|.+.....|-+.+++...++||.
T Consensus 432 s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~------~~~~ark~y~~l~~lpp~sl~l~r~miq~e~ 505 (568)
T KOG2396|consen 432 SASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESG------GYKKARKVYKSLQELPPFSLDLFRKMIQFEK 505 (568)
T ss_pred HHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhc------chHHHHHHHHHHHhCCCccHHHHHHHHHHHh
Confidence 332111 11222223455555442 333456667777766666 7899999999999988888899999999999
Q ss_pred hc--CChhhHHHHHHHHHhhcCCcc
Q 005434 667 KL--GTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 667 ~~--G~~~~a~~vy~ral~~~~~~~ 689 (697)
+. -+..++|.+|++|+..++..+
T Consensus 506 ~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 506 EQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred hHhhcCchHHHHHHHHHHHHhCCCh
Confidence 84 348899999999999998443
No 26
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.61 E-value=7e-13 Score=141.49 Aligned_cols=429 Identities=13% Similarity=0.088 Sum_probs=262.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH----------HHh-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 005434 147 YRLAVMRFKGDIELWFKYMEFC----------RQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212 (697)
Q Consensus 147 yeral~~~p~~~~lW~~y~~~~----------~~~-~---~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR 212 (697)
....+.++|++.+.|-.....- ... . ...++.+|...|...|.+..+|..||.+|. ..|++.++-
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~ 99 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSV 99 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHH
Confidence 3456677787777774332221 111 1 246799999999999999999999999997 899999999
Q ss_pred HHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCC
Q 005434 213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP 292 (697)
Q Consensus 213 ~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 292 (697)
++|+||+...|.|..+|+.|+.|-....
T Consensus 100 ~Vfergv~aip~SvdlW~~Y~~f~~n~~---------------------------------------------------- 127 (577)
T KOG1258|consen 100 KVFERGVQAIPLSVDLWLSYLAFLKNNN---------------------------------------------------- 127 (577)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC----------------------------------------------------
Confidence 9999999999999999999998754210
Q ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434 293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (697)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~ 369 (697)
.+-+..+..|++|+..++.++ .||..|+++... ......+-.|++..++.=-+.......
T Consensus 128 --------------~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---qks~k~v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 128 --------------GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---QKSWKRVANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred --------------CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---cccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 011246889999998887653 577777665521 124566777777766531111111111
Q ss_pred HHHhhcccCCCCCCCCcCccchHHHHHHHHHHH-HhhcC-CchhHHHHHHHHHHHHhcCCccc-ccCC----CCCch--h
Q 005434 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE-ALKNV-PSSMIFDLYTKFLMDMIAPKKEE-TRDS----ELPSH--V 440 (697)
Q Consensus 370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~-al~~~-~~~~lw~~yi~~~~~~~~~~~~~-~~~~----~~~~~--~ 440 (697)
.-+..+...... .........+....+-++ .+... +..+-|..+++............ +.+. -+... .
T Consensus 191 ~f~~~l~~~~~~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~ 267 (577)
T KOG1258|consen 191 RFKQLLNQNEEK---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQK 267 (577)
T ss_pred HHHHHHhcCChh---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 101111100000 000000000111111111 00000 01112222222111000000000 0000 00000 0
Q ss_pred HhHHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434 441 EHYISHLLTVYEKAEAM-----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~-----~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (697)
.......+..||..+.- +|.+ -..|..|+.+....|+.+.+.-++++++ -+|..-.+.|..|+......+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i~cA~Y~efWiky~~~m~~~~- 345 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-IPCALYDEFWIKYARWMESSG- 345 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-hHHhhhHHHHHHHHHHHHHcC-
Confidence 11123455666666653 3443 2579999999999999999999999998 788888899999999888765
Q ss_pred cCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH
Q 005434 513 RNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL 590 (697)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~ 590 (697)
++.-+..++..+.+..-+ +...+-++++-+.+..+ ..++.++++....+ +. ...+-..++.|
T Consensus 346 ---------~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg-----~v~~~l~~~~~ 409 (577)
T KOG1258|consen 346 ---------DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PG-----LVEVVLRKINW 409 (577)
T ss_pred ---------chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-Cc-----hhhhHHHHHhH
Confidence 356666667777664322 23456666777777665 57888888887766 32 34555668999
Q ss_pred HHHhCCHHHHH---HHHHHHHhCCCC---CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434 591 VIQKDGIQQAR---EMYKRFLALPRP---GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST 664 (697)
Q Consensus 591 ~~~~~~~~~AR---~iy~~~i~~~p~---~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f 664 (697)
+.+.|+.+.+. .+|.......-. -..++..++.+-..... +.+.||.++..++...|.+..+|..++.|
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~-----d~~~a~~~l~~~~~~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE-----DADLARIILLEANDILPDCKVLYLELIRF 484 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc-----CHHHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 99999999888 444444432211 13478888888887753 88999999999999999999999999999
Q ss_pred HHhcCCh
Q 005434 665 ETKLGTS 671 (697)
Q Consensus 665 E~~~G~~ 671 (697)
+..++..
T Consensus 485 ~~~~~~~ 491 (577)
T KOG1258|consen 485 ELIQPSG 491 (577)
T ss_pred HHhCCcc
Confidence 9987543
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=1.3e-11 Score=142.37 Aligned_cols=352 Identities=11% Similarity=-0.008 Sum_probs=226.6
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~ 252 (697)
...+..+++..+..+|+++..+...+.-.+ ..|+.+.|...|++++...|++...|.....+....
T Consensus 58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~------------- 123 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS------------- 123 (656)
T ss_pred cchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-------------
Confidence 456777888888888888877777776665 678888888888888888888777665544322110
Q ss_pred ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (697)
Q Consensus 253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~ 332 (697)
++.+.|...|+++++..|++...+..
T Consensus 124 ------------------------------------------------------g~~~~Ai~~l~~Al~l~P~~~~a~~~ 149 (656)
T PRK15174 124 ------------------------------------------------------KQYATVADLAEQAWLAFSGNSQIFAL 149 (656)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 12345677777887777777777666
Q ss_pred HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-
Q 005434 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM- 411 (697)
Q Consensus 333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~- 411 (697)
....+...+ ..+.+...+..+....|+++..+..++.+ +. .++++.|..+|+.+++..|...
T Consensus 150 la~~l~~~g---~~~eA~~~~~~~~~~~P~~~~a~~~~~~l-~~-------------~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 150 HLRTLVLMD---KELQAISLARTQAQEVPPRGDMIATCLSF-LN-------------KSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHHHHCC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH-------------cCCHHHHHHHHHHHHhcCCCcch
Confidence 666654433 24566677777777788777766544332 22 3677888888888877654221
Q ss_pred -HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 005434 412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE----ARKLAA 486 (697)
Q Consensus 412 -lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~----A~~l~~ 486 (697)
.+........ ..+..+.|...|++++..+|.++..+..++..+...|++++ |...++
T Consensus 213 ~~~~~l~~~l~------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 213 ESAGLAVDTLC------------------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred hHHHHHHHHHH------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 1111111111 12446778888888888888888888888888888888875 788888
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHH
Q 005434 487 KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLV 564 (697)
Q Consensus 487 ~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~ 564 (697)
+++ ...|++...|..+..+....+. .+.+...+++++..-|.. ..++..+...+...+ +.+...|
T Consensus 275 ~Al-~l~P~~~~a~~~lg~~l~~~g~----------~~eA~~~l~~al~l~P~~--~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 275 HAL-QFNSDNVRIVTLYADALIRTGQ----------NEKAIPLLQQSLATHPDL--PYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHH-hhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888 7788888888888877776653 677778888888765543 344444444333333 4455566
Q ss_pred HHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434 565 EIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLF 644 (697)
Q Consensus 565 ~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly 644 (697)
++++..-+ . ..........-+...|+.++|.+.|++++...|... .. .++.++.-|
T Consensus 342 ~~al~~~P-~-----~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~------~~~ea~~~~ 397 (656)
T PRK15174 342 VQLAREKG-V-----TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQ------SFEEGLLAL 397 (656)
T ss_pred HHHHHhCc-c-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hh------hHHHHHHHH
Confidence 66554211 0 111111123334567888888888888888776542 11 556778888
Q ss_pred HHHHhhCC-CCch-HHHHHHHH
Q 005434 645 ESALATYD-QNTS-LWRDYYST 664 (697)
Q Consensus 645 e~al~~~~-~~~~-lW~~y~~f 664 (697)
+.++...+ .... -|..=..+
T Consensus 398 ~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 398 DGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHhcCCccchhhHHHHHhc
Confidence 88888766 3333 57644444
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=3.8e-11 Score=141.21 Aligned_cols=403 Identities=8% Similarity=-0.017 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+..+|.++....|.+...|...+......+ ...+..+|++++...|.++.+|...+.... ..|+.+.|...+++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 45668999998888999999999999888877 568999999999999999999999998886 7899999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (697)
...|++.. |.....+....
T Consensus 111 ~~~P~~~~-~~~la~~l~~~------------------------------------------------------------ 129 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRA------------------------------------------------------------ 129 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHC------------------------------------------------------------
Confidence 99999887 76665433211
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC--hh---hHHHHHHhh
Q 005434 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PK---YWDWLARLK 374 (697)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~--~~---~w~~~a~~~ 374 (697)
+..+.|...|+++++..|++.+.+..+..++..-+ ..+.+...++.+.. .|+. .. .....++..
T Consensus 130 -------g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~---~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 130 -------GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR---LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh
Confidence 12356788999999999998888777666654322 23445555555444 4432 11 111122222
Q ss_pred cccCCCCCCCCcCccchHH---HHHHHHHHHHhhcCC---chh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHH
Q 005434 375 MTDSVSKDGTSEDIVPSQM---QKAIQVYEEALKNVP---SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH 446 (697)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~---~~a~~vye~al~~~~---~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (697)
+... ....+++ ++|...|+..++..| ... .-...++..-..+ ..+..+.
T Consensus 199 ~~~~--------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll---------------~~g~~~e 255 (765)
T PRK10049 199 FMPT--------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL---------------ARDRYKD 255 (765)
T ss_pred cccc--------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH---------------HhhhHHH
Confidence 1100 0011333 788999999886543 221 1111111111111 1345788
Q ss_pred HHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhcccCCCCCC
Q 005434 447 LLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 447 ar~~ye~al~~~---~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
|+..|++++..+ |.....|. +..+...|++++|..++++++ ...|.+ ...+..........+
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g-------- 324 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESE-------- 324 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcc--------
Confidence 999999998875 34445664 778889999999999999998 555554 334444333333333
Q ss_pred ccchHHHHHHHHHHHhhcChh-------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH
Q 005434 520 KADILSIFELLKCILTKVSAL-------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP 584 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~p~~-------------~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~ 584 (697)
+.+++.+.++++....|.. .........+..+...+ +.+..++++++...+. ...++
T Consensus 325 --~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~ 396 (765)
T PRK10049 325 --NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLR 396 (765)
T ss_pred --cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence 4788888888887765521 11223334444444444 5677888888754321 34555
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434 585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST 664 (697)
Q Consensus 585 ~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f 664 (697)
...+..+...|..++|.+++++++...|.+..++...+.....++ +.+.|.++++.++...|.++.+-..-...
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ------EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 556666778899999999999999999999988888888877787 89999999999999999887554433333
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.56 E-value=2.7e-11 Score=139.57 Aligned_cols=288 Identities=9% Similarity=0.010 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+..+++..+...|++...+...+......| ...+...|++++..+|+++..|...+.... ..|+.+.|...|++++
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAW 137 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 34668999999999999999999987766666 578999999999999999999999999886 7899999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (697)
...|++..+|...+......+
T Consensus 138 ~l~P~~~~a~~~la~~l~~~g----------------------------------------------------------- 158 (656)
T PRK15174 138 LAFSGNSQIFALHLRTLVLMD----------------------------------------------------------- 158 (656)
T ss_pred HhCCCcHHHHHHHHHHHHHCC-----------------------------------------------------------
Confidence 999999888887766543322
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC-hhhHHHHHHhhcccC
Q 005434 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLKMTDS 378 (697)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~-~~~w~~~a~~~l~~~ 378 (697)
..+.|..+|+.++...|++.+.+..+..++ . . .....+..+++.+++..|.. ...+..++.....
T Consensus 159 --------~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~-~--~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-- 224 (656)
T PRK15174 159 --------KELQAISLARTQAQEVPPRGDMIATCLSFL-N--K-SRLPEDHDLARALLPFFALERQESAGLAVDTLCA-- 224 (656)
T ss_pred --------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H--c-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH--
Confidence 123455556555555555544443322111 1 1 12345556666666665433 2222222333222
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
.++.+.|...|++++...|... .+..+........ + .......|...|++++..
T Consensus 225 -----------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-----~---------~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 225 -----------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG-----R---------SREAKLQAAEHWRHALQF 279 (656)
T ss_pred -----------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----C---------chhhHHHHHHHHHHHHhh
Confidence 3556667777777776665543 3332222222110 0 001112467777777777
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+|.+...|..++..+...|++++|...+++++ ...|++..++..+.......| +.+.+.+.|++++...
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G----------~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVG----------QYTAASDEFVQLAREK 348 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777 566777666666665555544 3566666677766554
Q ss_pred C
Q 005434 538 S 538 (697)
Q Consensus 538 p 538 (697)
|
T Consensus 349 P 349 (656)
T PRK15174 349 G 349 (656)
T ss_pred c
Confidence 4
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-11 Score=129.40 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
...++..+|+.+++.-|..++.|...+.-+...| ...+-..|..+|+++|.....--...... ...|.++.|..-|.+
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl-ka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL-KAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH-HhhcccchhHHHHHH
Confidence 3667889999999999999999999988777776 46789999999999998665555555555 468999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
|++..|.-.-.|....-.-...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~---------------------------------------------------------- 231 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQ---------------------------------------------------------- 231 (966)
T ss_pred HHhhCCceeeeehhcchHHhhc----------------------------------------------------------
Confidence 9999996434444332211111
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~ 377 (697)
++.-.|..-|++|++--|.-.+....+=..+.... ..+.+-.-+.+++..-|+....+..+|-.+.+
T Consensus 232 ---------Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~---~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye- 298 (966)
T KOG4626|consen 232 ---------GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR---IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE- 298 (966)
T ss_pred ---------chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh---cchHHHHHHHHHHhcCCcchhhccceEEEEec-
Confidence 12235566677777655543333333333333221 23455566677777777777776666666655
Q ss_pred CCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
+|.++.|+..|++||..-|.-. ++|-++-... . ..+.+..+...|.+|+..
T Consensus 299 ------------qG~ldlAI~~Ykral~~~P~F~--~Ay~NlanAL-k--------------d~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 299 ------------QGLLDLAIDTYKRALELQPNFP--DAYNNLANAL-K--------------DKGSVTEAVDCYNKALRL 349 (966)
T ss_pred ------------cccHHHHHHHHHHHHhcCCCch--HHHhHHHHHH-H--------------hccchHHHHHHHHHHHHh
Confidence 4889999999999998877532 4554443221 0 136688999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+|..++.-...+..+...|.++.|..+|.+++ ..+|....-......+..+.|. .+.+..-|..||+.-
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kqqgn----------l~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQQGN----------LDDAIMCYKEALRIK 418 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHhccc----------HHHHHHHHHHHHhcC
Confidence 99999988889999999999999999999999 7888876666666666666553 677778899998766
Q ss_pred ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH---HHHHhCCHHHHHHHHHHHHhCCC
Q 005434 538 SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN---LVIQKDGIQQAREMYKRFLALPR 612 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p 612 (697)
|.- ..-..-.-.-+...+ ..+.+.|.+|++. .+.+..+... .....|++..|.+-|+.|+++.|
T Consensus 419 P~f--Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~---------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 419 PTF--ADALSNMGNTYKEMGDVSAAIQCYTRAIQI---------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred chH--HHHHHhcchHHHHhhhHHHHHHHHHHHHhc---------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 532 111111111111111 3456678888864 3444444433 34568999999999999999998
Q ss_pred CCHHHHH
Q 005434 613 PGLVLYQ 619 (697)
Q Consensus 613 ~~~~~~~ 619 (697)
.....+.
T Consensus 488 DfpdA~c 494 (966)
T KOG4626|consen 488 DFPDAYC 494 (966)
T ss_pred CCchhhh
Confidence 8766443
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=3.3e-10 Score=130.58 Aligned_cols=385 Identities=10% Similarity=-0.063 Sum_probs=244.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~ 252 (697)
+..+...|++++...|+ +.+|...+...+ ..|+.+.|...+++++...|+....|..-.......+..
T Consensus 143 ~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~---------- 210 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY---------- 210 (615)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH----------
Confidence 57899999999999996 788888877775 789999999999999999999887777665544332211
Q ss_pred ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (697)
Q Consensus 253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~ 332 (697)
+.|..-|..+....+........
T Consensus 211 ---------------------------------------------------------~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 211 ---------------------------------------------------------ADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhCCCccHHHHH
Confidence 12222222222111111010011
Q ss_pred HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-
Q 005434 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM- 411 (697)
Q Consensus 333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~- 411 (697)
.+.... ...+.......++..|.+...|..++.+.... . .......++...+..+...
T Consensus 234 ~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 234 AVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF--R------------PKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc--c------------CCcchhhhhccccccccccc
Confidence 100000 01122223334445555544455444433110 0 0000111222222111111
Q ss_pred -HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (697)
Q Consensus 412 -lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~~~~lw~~y~~l~~~~~~~~~A~~l~~~ 487 (697)
....+....... ..+..+.+...|++++..+ |.....|...+.++...|++++|...+++
T Consensus 293 ~~~~l~~~~~e~~----------------~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 293 GQLQLGLKSPESK----------------ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred chHHHHHHHHHhh----------------hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111221111110 1245778999999999864 55567788888999999999999999999
Q ss_pred HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHH
Q 005434 488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVE 565 (697)
Q Consensus 488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~ 565 (697)
++ ...|.+...|.....+....+ +.+++.+.|++++..-|.. ..+|......+...+ +.+...|+
T Consensus 357 al-~l~P~~~~~~~~la~~~~~~g----------~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 357 SI-ELDPRVTQSYIKRASMNLELG----------DPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HH-HcCCCcHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99 789999999988887776665 4788999999999876543 466666555444444 56778888
Q ss_pred HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434 566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE 645 (697)
Q Consensus 566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye 645 (697)
+++...+. ....+..........|++++|...|++++...|.....+..+..+....| +++.|.+.|+
T Consensus 424 kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g------~~~~A~~~~~ 491 (615)
T TIGR00990 424 KSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN------KFDEAIEKFD 491 (615)
T ss_pred HHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc------CHHHHHHHHH
Confidence 88764221 11122222333567899999999999999999998888888888888888 8999999999
Q ss_pred HHHhhCCCCchH-------HHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 646 SALATYDQNTSL-------WRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 646 ~al~~~~~~~~l-------W~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
+|+...+..... +.....+....|+.+.|..++++|+..-++.
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 999988743222 2222233334699999999999999876544
No 32
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=4.2e-11 Score=131.21 Aligned_cols=403 Identities=12% Similarity=0.141 Sum_probs=251.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHhhhhCCCCHH
Q 005434 151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD--HNLNVTAARALMQNGLRVCPTSEE 227 (697)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~--~~~~~~~aR~~~~r~l~~~p~~~~ 227 (697)
+...+.++..-..++.++.+.| ..+++..-..+-.+.|.+|.+|+.++.-+.. ..++...+-..|++||--. .+..
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~ 184 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVP 184 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccch
Confidence 3445556666666677777777 4678888788888899999999999886642 3367888899999999665 3689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhh
Q 005434 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (697)
Q Consensus 228 lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (697)
||.+|+.+-...++. +. . ..
T Consensus 185 iw~e~~~y~~~~~~~----------~~------------------------~--------------------------~~ 204 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNV----------AK------------------------K--------------------------SE 204 (881)
T ss_pred HHHHHHHHHHhcccc----------cc------------------------c--------------------------cc
Confidence 999999887654321 00 0 01
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (697)
Q Consensus 308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~ 387 (697)
+++..|.+|.+|+......+.-...+|.++..|+... +...
T Consensus 205 d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~---l~n~------------------------------------ 245 (881)
T KOG0128|consen 205 DYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTY---LCNV------------------------------------ 245 (881)
T ss_pred cchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHH---HHhH------------------------------------
Confidence 3456789999999877665544556666666654210 0000
Q ss_pred ccchHHHHHHHHHHHHhhcCC--chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHH
Q 005434 388 IVPSQMQKAIQVYEEALKNVP--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA 465 (697)
Q Consensus 388 ~~~~~~~~a~~vye~al~~~~--~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw 465 (697)
..++....+...+..-- +..-|..+-.+...++...... .......+.+.+..+++.+...+.....|
T Consensus 246 ----~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~------~~~a~~~l~~~~~~~e~~~q~~~~~~q~~ 315 (881)
T KOG0128|consen 246 ----EQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKK------LDDALKNLAKILFKFERLVQKEPIKDQEW 315 (881)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhcc------HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 01111122222221110 0001111111100000000000 00012334566777888888877778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHH
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL 545 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~l 545 (697)
.+|++++...|.+.....++++++ ...+.+..+|..|-.+.-.. ..+ .+....++-+|+..+|- +..|
T Consensus 316 ~~yidfe~~~G~p~ri~l~~eR~~-~E~~~~~~~wi~y~~~~d~e----Lkv-----~~~~~~~~~ra~R~cp~--tgdL 383 (881)
T KOG0128|consen 316 MSYIDFEKKSGDPVRIQLIEERAV-AEMVLDRALWIGYGVYLDTE----LKV-----PQRGVSVHPRAVRSCPW--TGDL 383 (881)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH-HhccccHHHHhhhhhhcccc----ccc-----ccccccccchhhcCCch--HHHH
Confidence 999999999999999888999999 78888899999876433211 111 12333457778877764 4789
Q ss_pred HHHHHHHHHhhhHH---HHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH------hCCHHHHHHHHHHHHh-------
Q 005434 546 WLMALKFFMNQKHY---FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ------KDGIQQAREMYKRFLA------- 609 (697)
Q Consensus 546 W~~y~~~~~~~~~~---~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~------~~~~~~AR~iy~~~i~------- 609 (697)
|..|+.-++++.+. +-..+.+++.. ...+...|+-+... ...++.-|+.|..|..
T Consensus 384 ~~rallAleR~re~~~vI~~~l~~~ls~---------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~ 454 (881)
T KOG0128|consen 384 WKRALLALERNREEITVIVQNLEKDLSM---------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG 454 (881)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHH---------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 99887444444432 22334444321 11222233333222 2344555556665543
Q ss_pred C-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 610 L-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 610 ~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
. ..+.+.+.+.++.+|..+.. +++.+|.++...+..-+.+. ..|+.|+++|..+|+...+|.++.+|.....+
T Consensus 455 ~~~Dt~~~~~q~wA~~E~sl~~-----nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~ 529 (881)
T KOG0128|consen 455 DQLDTRTEVLQLWAQVEASLLK-----NMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVD 529 (881)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh-----chhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcC
Confidence 3 44567788999999998863 89999999999987755554 49999999999999999999999999888766
Q ss_pred cc
Q 005434 688 ST 689 (697)
Q Consensus 688 ~~ 689 (697)
+.
T Consensus 530 ~~ 531 (881)
T KOG0128|consen 530 PE 531 (881)
T ss_pred ch
Confidence 63
No 33
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.44 E-value=5.1e-13 Score=137.45 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh-CCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434 544 SLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK-DGIQQAREMYKRFLALPRPGLVLYQN 620 (697)
Q Consensus 544 ~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~-~~~~~AR~iy~~~i~~~p~~~~~~~~ 620 (697)
-+|+.|+.++.+.+ +.+|.+|++|++. + .....++..|+.++... ++.+.|++||+++++..|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--K----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--C----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 36999999887765 6799999999731 1 12567788888887774 56666999999999999999999999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--C-CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc---cccccC
Q 005434 621 CIELENNLASVGDKDSLVNARKLFESALATYD--Q-NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS---TALTAL 694 (697)
Q Consensus 621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~-~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~---~~f~~~ 694 (697)
|++++..++ ++++||.+||+++...+ . ...+|..|++||.++|+.+.+.+|+.|+...+++. ..|+..
T Consensus 76 Y~~~l~~~~------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 76 YLDFLIKLN------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred HHHHHHHhC------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999998 99999999999999988 3 45899999999999999999999999999999754 267766
Q ss_pred CC
Q 005434 695 PD 696 (697)
Q Consensus 695 ~~ 696 (697)
|.
T Consensus 150 y~ 151 (280)
T PF05843_consen 150 YS 151 (280)
T ss_dssp T-
T ss_pred hh
Confidence 63
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.43 E-value=3.2e-09 Score=118.59 Aligned_cols=464 Identities=13% Similarity=0.091 Sum_probs=236.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
+..-|+||+...|.++..-.....+..... +.++-.++.++-..+|.+|.+=...|.+.+ ..|++..|-.+..-+
T Consensus 218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHH
Confidence 445666677777766666655555544322 345566666666666766666666666555 456666666666666
Q ss_pred hhhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434 219 LRVCPTSEEL---WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (697)
Q Consensus 219 l~~~p~~~~l---W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (697)
+...-..... .....+..-..|+...+-+.+..... . ++ +.++ ++ ..+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k-~---~~-------------d~~~-l~----------~~G- 347 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK-A---DN-------------DNFV-LP----------LVG- 347 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-c---CC-------------CCcc-cc----------ccc-
Confidence 6655322222 12222333333332222221111100 0 00 0000 00 000
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHcc-ccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (697)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe-~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~ 374 (697)
.....+...+++.+...|++-++..|+..+.-.-+=-++.... .....+.+..++.+..+..|.+...|+.+|++.
T Consensus 348 ---lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 ---LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ---hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 0001112235678889999999999998655433333333221 111346788889999999999999999999998
Q ss_pred cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHH--HHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDL--YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (697)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~--yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye 452 (697)
...... .+ .+.+.+|+.++......+|... -+. -..|. .+.+..|...|.
T Consensus 425 e~~d~~------~s-L~~~~~A~d~L~~~~~~ip~E~-LNNvaslhf~--------------------~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 425 EQTDPW------AS-LDAYGNALDILESKGKQIPPEV-LNNVASLHFR--------------------LGNIEKALEHFK 476 (1018)
T ss_pred HhcChH------HH-HHHHHHHHHHHHHcCCCCCHHH-HHhHHHHHHH--------------------hcChHHHHHHHH
Confidence 652100 00 2233444444444444444321 111 11121 234566666666
Q ss_pred HHHHc-----CCC---cHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccc
Q 005434 453 KAEAM-----GCL---TEDI--AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD 522 (697)
Q Consensus 453 ~al~~-----~~~---~~~l--w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~ 522 (697)
.|... ++. +..+ =...+.+++..++++.|.++|...+ ..+|.-.+-+.+..-+....+ .
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il-kehp~YId~ylRl~~ma~~k~----------~ 545 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL-KEHPGYIDAYLRLGCMARDKN----------N 545 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHCchhHHHHHHhhHHHHhcc----------C
Confidence 66554 111 1222 3344677777778888888888877 677775555544432332222 2
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH--------H
Q 005434 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQKH--YFDKLVEIALISVAKDGGGESGFSLPSAIINLV--------I 592 (697)
Q Consensus 523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~--~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~--------~ 592 (697)
...+...+..++.... .....|.++-+++....+ .+.+-|++.++.............+-..|+.-+ .
T Consensus 546 ~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 3445555666665332 124566666655544432 122222222221111100000111112222221 1
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE 672 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (697)
..+..++|.++|+++|...|.+...-..-.-+--..+ .+..||.+|-+..+.-.+++++|+.-+.--...|..-
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 2355677777777777776655321111111111122 5677777777777654456777777777766677777
Q ss_pred hHHHHHHHHHhhcC
Q 005434 673 TATAVYWRARKTLK 686 (697)
Q Consensus 673 ~a~~vy~ral~~~~ 686 (697)
.|.++|+++++.+-
T Consensus 698 ~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777775
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=8.4e-13 Score=136.76 Aligned_cols=269 Identities=21% Similarity=0.164 Sum_probs=106.7
Q ss_pred hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC--Cchh-HHHHHHHHHHHHhcCCcccccCCC
Q 005434 359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV--PSSM-IFDLYTKFLMDMIAPKKEETRDSE 435 (697)
Q Consensus 359 ~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~--~~~~-lw~~yi~~~~~~~~~~~~~~~~~~ 435 (697)
.+|. ...+.+|..++. .+++++|.+++++++... |+.. .|..+..+...
T Consensus 5 ~~~~--~~~l~~A~~~~~-------------~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~------------- 56 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQ-------------RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS------------- 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccc-------------cccccccccccccccccccccccccccccccccccc-------------
Confidence 3455 233466777765 488999999999888776 3333 77766655443
Q ss_pred CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434 436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~ 515 (697)
.+..+.++..|++.+..++.++.....++.+ ...+++++|..+++++. ... ++...|..++.+....+
T Consensus 57 -----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~-~~~-~~~~~l~~~l~~~~~~~---- 124 (280)
T PF13429_consen 57 -----LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY-ERD-GDPRYLLSALQLYYRLG---- 124 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT----
T ss_pred -----ccccccccccccccccccccccccccccccc-ccccccccccccccccc-ccc-cccchhhHHHHHHHHHh----
Confidence 2456789999999999988888888888888 78899999999999988 444 45678888888776655
Q ss_pred CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ 593 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~ 593 (697)
+.+++.++++++....+...+..+|..++.++...+ +.+...|++++...+. ...+...++..+..
T Consensus 125 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 125 ------DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLID 192 (280)
T ss_dssp -------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCT
T ss_pred ------HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHH
Confidence 467788888887654433346789999998887766 5788999999875432 34556666666778
Q ss_pred hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434 594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET 673 (697)
Q Consensus 594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (697)
.|+.++++.+++......|.+..+|..++.....+| +.+.|..+|++++...|+++.+...|++.-...|..+.
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg------~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG------RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc------cccccccccccccccccccccccccccccccccccccc
Confidence 899999999999998887788888888888888888 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 005434 674 ATAVYWRARKTL 685 (697)
Q Consensus 674 a~~vy~ral~~~ 685 (697)
|..|+.++.+.+
T Consensus 267 A~~~~~~~~~~l 278 (280)
T PF13429_consen 267 ALRLRRQALRLL 278 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999998765
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=1.7e-08 Score=119.61 Aligned_cols=536 Identities=11% Similarity=0.017 Sum_probs=324.3
Q ss_pred HhhHHHHHHHhCCCCChHHH------------HHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHH
Q 005434 76 KQRRKFEYRLKRPSPLKQDY------------LAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARI 143 (697)
Q Consensus 76 ~kR~~fE~~l~r~~~~~~~~------------~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 143 (697)
+.=..||.-+...|.+.... ++|.++|.-+..|. .|..... |.......-....-..-.--..+
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~---~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAAS---PEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCC---CCcHHHHHHHHHHHHHHhCHHHH
Confidence 33467777777777665433 46889988887776 4432210 00000000000000000012447
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434 144 LEIYRLAVMRFKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (697)
Q Consensus 144 ~~iyeral~~~p~~~~lW~~y~~~~~~-~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~ 222 (697)
..+++++++..|.+.+.+..+.+.... .+...+..++...+ ..++.+|..++...+ ..|+.+.|..++...=...
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~l---k~d~~l~~ala~~yi-~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGI---FTDPQSRITYATALA-YRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhc---ccCHHHHHHHHHHHH-HCCCHHHHHHHHHhCcccc
Confidence 789999999999999999888885554 23345666655433 378999999999997 7999999998888732222
Q ss_pred ---CCCHHHHHHHHHHHHHH-----H----HHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC-
Q 005434 223 ---PTSEELWVEYLRMELTY-----L----NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG- 289 (697)
Q Consensus 223 ---p~~~~lW~~y~~~E~~~-----~----~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~- 289 (697)
|. +..|+--+.=+... . ..-..++.++....+-. ...+.|.. ... +.... +.++..
T Consensus 278 ~~~~~-~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~-~~~~~--~~~~~~~ 346 (987)
T PRK09782 278 TTDAQ-EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVL------LKEGQYDA-AQK-LLATL--PANEMLE 346 (987)
T ss_pred cCCCc-cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHH------HhccHHHH-HHH-HhcCC--CcchHHH
Confidence 43 34444332111110 0 00001111111000000 00000000 000 00000 000000
Q ss_pred ---C---C------------------C-cchhh-hhhhhhhhhhhhhHHHHHHHHHHhcCCC---chHHHHHHHHHHHHc
Q 005434 290 ---S---Q------------------P-ENMES-QKSVDLFREQGLRVLQTIYSGAVEALPS---SFNLRQRFFEIVEAT 340 (697)
Q Consensus 290 ---~---~------------------~-~~~~~-~~~~~~~~~~~~~~a~~iy~~al~~~p~---~~~~~~~~~~~~~~f 340 (697)
. . . ....+ +.....+.+++.+.|..+|+.+....++ +..+...+..++.+-
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 0 0 0 00111 1111222334568899999999875322 123555677777654
Q ss_pred cccCcHHHH----------------------HHHHHHHHh---hCCC--ChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434 341 NLAQSDDMH----------------------DKILSDMQR---DFLV--DPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (697)
Q Consensus 341 e~~~~~~~~----------------------~~il~~~~~---~~p~--~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~ 393 (697)
+.......+ ...++.+.. ..|. ++..|..++..... +..
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~--------------~~~ 492 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD--------------TLP 492 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh--------------CCc
Confidence 321111111 222333333 3455 67778888877753 456
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434 394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL 473 (697)
Q Consensus 394 ~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~ 473 (697)
+.|...|.+++...|+.. . .+....... ..+..+.|...|++++...|. ...|...+..+.
T Consensus 493 ~eAi~a~~~Al~~~Pd~~--~---~L~lA~al~-------------~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all 553 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAW--Q---HRAVAYQAY-------------QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHhCCchH--H---HHHHHHHHH-------------HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHH
Confidence 779999999999888742 2 111111000 135578899999998776444 455788889999
Q ss_pred hcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q 005434 474 QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFF 553 (697)
Q Consensus 474 ~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~ 553 (697)
..|++++|...+++++ ...|....+...........| +.+.+...|++++...|. ...|......+
T Consensus 554 ~~Gd~~eA~~~l~qAL-~l~P~~~~l~~~La~~l~~~G----------r~~eAl~~~~~AL~l~P~---~~a~~~LA~~l 619 (987)
T PRK09782 554 AAGNGAARDRWLQQAE-QRGLGDNALYWWLHAQRYIPG----------QPELALNDLTRSLNIAPS---ANAYVARATIY 619 (987)
T ss_pred HCCCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 9999999999999999 677877655543222221224 478899999999987773 45676665555
Q ss_pred Hhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCC
Q 005434 554 MNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV 631 (697)
Q Consensus 554 ~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~ 631 (697)
...+ +.+...|++++..-+. .......+...+...|..++|..+|++++...|.+..++...+.....+|
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG-- 691 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD-- 691 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--
Confidence 4444 5678888888864221 23334444445667899999999999999999999998888888888888
Q ss_pred CCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 632 GDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 632 ~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
+++.|...|++++...|.+..+=..+.+++...++..++.+-|.|+...-++++
T Consensus 692 ----d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 692 ----DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred ----CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 899999999999999998888888999999999999999999999987665554
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.5e-08 Score=111.67 Aligned_cols=465 Identities=12% Similarity=0.040 Sum_probs=301.0
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~---~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~ 215 (697)
+...+..+|..|....-.....|.--.-||...+. +.+-..|...++.+|.+.-.-+.-|.+.+ ..+|+-.|-.+|
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yy 187 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYY 187 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHH
Confidence 56677789999988887777778777777776653 47888999999999999888888899997 789999999999
Q ss_pred HHhhhhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCC
Q 005434 216 QNGLRVCPTSE-----ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (697)
Q Consensus 216 ~r~l~~~p~~~-----~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 290 (697)
+++|+.+|... -+|.++.++-...... .+-.+++.+.+.. ...... +.
T Consensus 188 k~al~inp~~~aD~rIgig~Cf~kl~~~~~a~-~a~~ralqLdp~~---------v~alv~--------L~--------- 240 (1018)
T KOG2002|consen 188 KKALRINPACKADVRIGIGHCFWKLGMSEKAL-LAFERALQLDPTC---------VSALVA--------LG--------- 240 (1018)
T ss_pred HHHHhcCcccCCCccchhhhHHHhccchhhHH-HHHHHHHhcChhh---------HHHHHH--------HH---------
Confidence 99999999632 3688877765433211 1222233332211 000000 00
Q ss_pred CCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC---hhhH
Q 005434 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYW 367 (697)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~---~~~w 367 (697)
.......+..++..+...+.+|....+.++.+...+...|- .. .....+.++...++..--.. ...+
T Consensus 241 -------~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy--fK-~dy~~v~~la~~ai~~t~~~~~~aes~ 310 (1018)
T KOG2002|consen 241 -------EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY--FK-KDYERVWHLAEHAIKNTENKSIKAESF 310 (1018)
T ss_pred -------HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh--hc-ccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 00000111234567777777777777777665555444331 11 13455555555555543222 2225
Q ss_pred HHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 368 DWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 368 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
+.+|+-+-. .|++++|-..|-++++..+..-+.. +..+-+-+ ...+.++.+
T Consensus 311 Y~~gRs~Ha-------------~Gd~ekA~~yY~~s~k~~~d~~~l~-~~GlgQm~---------------i~~~dle~s 361 (1018)
T KOG2002|consen 311 YQLGRSYHA-------------QGDFEKAFKYYMESLKADNDNFVLP-LVGLGQMY---------------IKRGDLEES 361 (1018)
T ss_pred HHHHHHHHh-------------hccHHHHHHHHHHHHccCCCCcccc-ccchhHHH---------------HHhchHHHH
Confidence 556665543 4778888888888888777652222 11111111 134678999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccch
Q 005434 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLG----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI 523 (697)
Q Consensus 448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~ 523 (697)
...|++.+..+|.+.+.-.-.+.++...+ ..+.|..++.+++ ...|.+.+.|.....+++... .
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d-----------~ 429 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTD-----------P 429 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcC-----------h
Confidence 99999999999998776666666665554 4677888999999 788999999999999887654 3
Q ss_pred HHHHHHHHHHHhhcC--hhhhHHHHHHH---HHHHHhhhHHHHHHHHHHHHhhhhCCCCCC--CCChHHHH--HHHHHHh
Q 005434 524 LSIFELLKCILTKVS--ALESESLWLMA---LKFFMNQKHYFDKLVEIALISVAKDGGGES--GFSLPSAI--INLVIQK 594 (697)
Q Consensus 524 ~~~~~~f~~al~~~p--~~~~~~lW~~y---~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~--~~~l~~~y--l~~~~~~ 594 (697)
-.....|.+|+..+- .....+-|+-- ..|....-+.+...|..|...+.+..+.+. ...+-..| ...+...
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 344677888875321 11122334422 222222226778888888877543222222 23333344 2334556
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhH
Q 005434 595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETA 674 (697)
Q Consensus 595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a 674 (697)
++.+.|-++|...++.+|.=+.-++...-+....+ +...|-.++..++..+..+|+.|.-+..+........-+
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN------NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 89999999999999998866655555544444444 778999999999998889999999999999888777777
Q ss_pred HHHHHHHHhhcCCc
Q 005434 675 TAVYWRARKTLKDS 688 (697)
Q Consensus 675 ~~vy~ral~~~~~~ 688 (697)
..=|.+.++.....
T Consensus 584 ~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 584 KKKFETILKKTSTK 597 (1018)
T ss_pred ccHHHHHHhhhccC
Confidence 77777777665433
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.38 E-value=4.1e-08 Score=117.35 Aligned_cols=90 Identities=12% Similarity=-0.062 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~--~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
......+.+++...++....=..|..+++ .| ...+.++|+.+.....- +...+-...... ...|.+..|..+|..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhHHHhccccCCCCCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 34455666666666654444444444443 34 45677788777665432 222233334444 256777777777765
Q ss_pred hhhhCCCCHHHHHHHHHH
Q 005434 218 GLRVCPTSEELWVEYLRM 235 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~ 235 (697)
... |+ ...|...+..
T Consensus 432 M~~--pd-~~Tyn~LL~a 446 (1060)
T PLN03218 432 IRN--PT-LSTFNMLMSV 446 (1060)
T ss_pred cCC--CC-HHHHHHHHHH
Confidence 543 43 4455544433
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.35 E-value=8.1e-08 Score=114.01 Aligned_cols=204 Identities=16% Similarity=0.106 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+...|++|+...|++..+....+.+....| ...+...+++++..+|.+..+....+.. ++...|-.++++.+
T Consensus 61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-----~~~~kA~~~ye~l~ 135 (987)
T PRK09782 61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-----PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-----ccChhHHHHHHHHH
Confidence 37889999999999999999999999988887 5789999999999999988887776443 67788999999999
Q ss_pred hhCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434 220 RVCPTSEELWVEYLRME-----LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E-----~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (697)
...|++.++-...+..| +.+.....+.. .+. ......++ . +
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~-AL~--lr~~~~~~--------------------------~-----~ 181 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQLPVARA-QLN--DATFAASP--------------------------E-----G 181 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhHHHHHH-HHH--HhhhCCCC--------------------------C-----c
Confidence 99999776554444432 12222111221 111 10000000 0 0
Q ss_pred hhhhhh-hhh-hhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH
Q 005434 295 MESQKS-VDL-FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (697)
Q Consensus 295 ~~~~~~-~~~-~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~ 372 (697)
..+... ..+ ...++.+.|..++...++..|.+.+.+..+-+.+..- .. . +.+..++.. ...+++.+|..++.
T Consensus 182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~-l~-~-~~a~al~~~---~lk~d~~l~~ala~ 255 (987)
T PRK09782 182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG-QL-D-DRLLALQSQ---GIFTDPQSRITYAT 255 (987)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hC-H-HHHHHHhch---hcccCHHHHHHHHH
Confidence 000000 111 1123457799999999999888777676666655431 11 1 334444332 22367899999999
Q ss_pred hhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (697)
Q Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~a~~vye~ 402 (697)
.++. .+..+.|..+.++
T Consensus 256 ~yi~-------------~G~~~~A~~~L~~ 272 (987)
T PRK09782 256 ALAY-------------RGEKARLQHYLIE 272 (987)
T ss_pred HHHH-------------CCCHHHHHHHHHh
Confidence 9886 3566666655544
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.31 E-value=1.8e-07 Score=111.98 Aligned_cols=383 Identities=11% Similarity=0.059 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRF--KGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (697)
Q Consensus 140 ~~r~~~iyeral~~~--p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~ 216 (697)
...+..+|+.+.... |.+.-.+..++..|.+.+. ..+..+|..+.. | +...|-..+..+. ..|+++.|+.+|+
T Consensus 386 l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~-k~g~~e~A~~lf~ 461 (1060)
T PLN03218 386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCA-SSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHH-hCcCHHHHHHHHH
Confidence 456677888877654 3344455567777777663 466677766653 4 4677888777775 7899999999999
Q ss_pred HhhhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434 217 NGLRVCPT-SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (697)
Q Consensus 217 r~l~~~p~-~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (697)
+..+.... +..+|...+..-...+.
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~------------------------------------------------------ 487 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGK------------------------------------------------------ 487 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcC------------------------------------------------------
Confidence 98876532 35666666554433222
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhC-CCChhhHHHHHHh
Q 005434 296 ESQKSVDLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARL 373 (697)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~-p~~~~~w~~~a~~ 373 (697)
.+.|..+|+...+.- ..+...|..++..|.+.+ ..+.+..+++.|.... .-+..+|..+...
T Consensus 488 -------------vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G---~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 488 -------------VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred -------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 234455555554431 112345555666555543 2345556666665432 1124455555555
Q ss_pred hcccCCCCCCCCcCccchHHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHH
Q 005434 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN----VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449 (697)
Q Consensus 374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~----~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~ 449 (697)
+.. .+.++.|..+|++.... .|+...|...+..+-+ .+.+++|..
T Consensus 552 ~~k-------------~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k------------------~G~ldeA~e 600 (1060)
T PLN03218 552 CGQ-------------SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN------------------AGQVDRAKE 600 (1060)
T ss_pred HHH-------------CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH------------------CCCHHHHHH
Confidence 543 25566666666666532 2333344444433322 234566666
Q ss_pred HHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434 450 VYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (697)
Q Consensus 450 ~ye~al~~~~-~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 528 (697)
+|+.....+. .+...|...+..+.+.|++++|.+++++.....+..+...|...|+...+.+ +++.+.+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----------~~eeA~~ 670 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----------DLDKAFE 670 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------CHHHHHH
Confidence 6666666542 3455666666666666777777766666653333334556665555555444 3566666
Q ss_pred HHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434 529 LLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK 605 (697)
Q Consensus 529 ~f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~ 605 (697)
+|..+.+. +++. ...|...+..+...+ +.+..+|+.+... +..+....|...+.-+.+.|.+++|.++|+
T Consensus 671 l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 671 ILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSI-----KLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666543 1221 234444444443333 4555566654321 011122234445555556666777777777
Q ss_pred HHHhC-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434 606 RFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (697)
Q Consensus 606 ~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~ 650 (697)
.+... ..|+...|...+..-.+.+ +++.|..+|+.+...
T Consensus 744 eM~~~Gi~Pd~~Ty~sLL~a~~k~G------~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 744 EMKRLGLCPNTITYSILLVASERKD------DADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHc
Confidence 66543 2344444444444444444 666677777666654
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.30 E-value=5.8e-08 Score=113.79 Aligned_cols=439 Identities=12% Similarity=0.054 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 140 VARILEIYRLAVMR--FKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARAL 214 (697)
Q Consensus 140 ~~r~~~iyeral~~--~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~ 214 (697)
...+..+|+.+... ++-+...+...+..|.+.+. ..+..++..+... .| ++..+-..+.... ..|+++.|+.+
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~-k~g~~~~A~~l 180 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHV-KCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHh-cCCCHHHHHHH
Confidence 45677888888764 34467788888888887763 5678888888774 34 4777888888775 78999999999
Q ss_pred HHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH---hccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCC
Q 005434 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVA---LGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQ 291 (697)
Q Consensus 215 ~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~---l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (697)
|++... |+ ...|...+.-....+....+...+ ..... .++.
T Consensus 181 f~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-------------------------------~p~~-- 224 (697)
T PLN03081 181 FDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGS-------------------------------DAEP-- 224 (697)
T ss_pred HhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-------------------------------CCCh--
Confidence 999864 43 456777766555444332222211 11000 0000
Q ss_pred Ccchhhhhhhh-hhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434 292 PENMESQKSVD-LFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (697)
Q Consensus 292 ~~~~~~~~~~~-~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~ 369 (697)
..+...+. .........++.++..+++.- ..+...+..+++.|.+.+ ..+.+..+++.+.. .+...|..
T Consensus 225 ---~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~~~vt~n~ 295 (697)
T PLN03081 225 ---RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG---DIEDARCVFDGMPE---KTTVAWNS 295 (697)
T ss_pred ---hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC---CHHHHHHHHHhCCC---CChhHHHH
Confidence 00000000 001112355666766666542 234456777888888765 34678888887643 45678988
Q ss_pred HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~--~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
+..-+.. .++.++|..+|++..+. .|+...+...+..+-. .+.++.+
T Consensus 296 li~~y~~-------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------~g~~~~a 344 (697)
T PLN03081 296 MLAGYAL-------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------LALLEHA 344 (697)
T ss_pred HHHHHHh-------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------ccchHHH
Confidence 8888865 47899999999988664 3444344433333322 2457889
Q ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHH
Q 005434 448 LTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI 526 (697)
Q Consensus 448 r~~ye~al~~~-~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~ 526 (697)
..+++.++..+ +.+..++...++++.+.|++++|.+++++.. . | +...|..-|.-..+.| +.+++
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~--~-d~~t~n~lI~~y~~~G----------~~~~A 410 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R--K-NLISWNALIAGYGNHG----------RGTKA 410 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C--C-CeeeHHHHHHHHHHcC----------CHHHH
Confidence 99999998886 3456788889999999999999999999876 3 3 4678998888777776 37889
Q ss_pred HHHHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHH
Q 005434 527 FELLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603 (697)
Q Consensus 527 ~~~f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~i 603 (697)
.++|++.... +.|. ...+...+.-+...+ +.+..+|+.+.... +..+....+...++.+-+.|.+++|.++
T Consensus 411 ~~lf~~M~~~g~~Pd--~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 411 VEMFERMIAEGVAPN--HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 9999998763 3332 223443443333333 56778888876421 1112334456678888899999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARK 683 (697)
Q Consensus 604 y~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~ 683 (697)
+++.- ..|+...|...+.--...+ +++.++.++++++...|.+...+...++.-...|+.+.|.++++...+
T Consensus 485 ~~~~~--~~p~~~~~~~Ll~a~~~~g------~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 485 IRRAP--FKPTVNMWAALLTACRIHK------NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHCC--CCCCHHHHHHHHHHHHHcC------CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 98752 2345667887777766677 889999999999988887777778888888889999999999987654
Q ss_pred h
Q 005434 684 T 684 (697)
Q Consensus 684 ~ 684 (697)
.
T Consensus 557 ~ 557 (697)
T PLN03081 557 K 557 (697)
T ss_pred c
Confidence 3
No 42
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.30 E-value=5e-11 Score=122.66 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 005434 412 IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL-GKLDEARKLAAKLCS 490 (697)
Q Consensus 412 lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~-~~~~~A~~l~~~al~ 490 (697)
.|..|.+|+... +.++.+|.+|++|...+..+..+|..+|.+|..+ ++.+.|++|+++++
T Consensus 3 v~i~~m~~~~r~------------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl- 63 (280)
T PF05843_consen 3 VWIQYMRFMRRT------------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL- 63 (280)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHh------------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence 588888887752 4489999999999977777899999999999995 66677999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh--HHHHHHHHHH
Q 005434 491 GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK--HYFDKLVEIA 567 (697)
Q Consensus 491 ~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~lW~~y~~~~~~~~--~~~~~l~~~a 567 (697)
..+|.+.++|..|+++++..+ +.+.+|.+|++++..++... +..||..|++|+...| +.+.++++++
T Consensus 64 k~f~~~~~~~~~Y~~~l~~~~----------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 64 KKFPSDPDFWLEYLDFLIKLN----------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 799999999999999999876 47999999999999998877 8899999999988877 4677888888
Q ss_pred HHhhhh
Q 005434 568 LISVAK 573 (697)
Q Consensus 568 ~~~~~~ 573 (697)
...++.
T Consensus 134 ~~~~~~ 139 (280)
T PF05843_consen 134 EELFPE 139 (280)
T ss_dssp HHHTTT
T ss_pred HHHhhh
Confidence 776643
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=1.5e-11 Score=127.37 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHH
Q 005434 159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (697)
Q Consensus 159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~ 235 (697)
...+.++......| +.++..++.+.+... |+++.+|..++.... ..++.+.|+..+++.+...|.++.....++.+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 44456677766666 578888887766554 788899999998885 78899999999999998887766665555544
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHH
Q 005434 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI 315 (697)
Q Consensus 236 E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 315 (697)
...++ .+.|..+
T Consensus 88 -~~~~~-------------------------------------------------------------------~~~A~~~ 99 (280)
T PF13429_consen 88 -LQDGD-------------------------------------------------------------------PEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccccc-------------------------------------------------------------------ccccccc
Confidence 22111 1223333
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHh--hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434 316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR--DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (697)
Q Consensus 316 y~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~--~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~ 393 (697)
+..+.+..++ ..++..++.++...+ ....+..+++.+.. ..|.++..|..+|..+.. .|+.
T Consensus 100 ~~~~~~~~~~-~~~l~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~ 162 (280)
T PF13429_consen 100 AEKAYERDGD-PRYLLSALQLYYRLG---DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-------------LGDP 162 (280)
T ss_dssp -------------------H-HHHTT----HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-------------CCHH
T ss_pred cccccccccc-cchhhHHHHHHHHHh---HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------------cCCH
Confidence 3333333222 344445554444332 34566667777554 346778899999999875 4889
Q ss_pred HHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434 394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY 472 (697)
Q Consensus 394 ~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~ 472 (697)
++|...|++||+..|.+. ++..++.+... .+..+.++.+++......|.++.+|..++..+
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLID------------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999755 66666554332 23455677777776666678888999999999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
...|++++|...+++++ ...|+++.+...+.+.....|. .+++.+++.+++.
T Consensus 225 ~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~----------~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGR----------KDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT---------------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccc----------ccccccccccccc
Confidence 99999999999999999 7899999999999999888774 5677777777664
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=1.1e-08 Score=111.35 Aligned_cols=257 Identities=9% Similarity=-0.034 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV----PGVWIYAAAWEFDHNLNVTAARAL 214 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~----~~lW~~~a~~e~~~~~~~~~aR~~ 214 (697)
...+...|++++...|++...|...+......| ...+..++++++...+.. ...|...+.... ..|+++.|..+
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~ 129 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEEL 129 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 455889999999999999999999998887777 568889999988753332 246777777775 78999999999
Q ss_pred HHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (697)
Q Consensus 215 ~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (697)
|++++...|.+...+...+.+....+
T Consensus 130 ~~~~l~~~~~~~~~~~~la~~~~~~g------------------------------------------------------ 155 (389)
T PRK11788 130 FLQLVDEGDFAEGALQQLLEIYQQEK------------------------------------------------------ 155 (389)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHhc------------------------------------------------------
Confidence 99999988876666655554432211
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHH
Q 005434 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (697)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~-----~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~ 369 (697)
+++.|...|+.+++..|.+.. ++..+...+... +..+.+...++++++..|+....+..
T Consensus 156 -------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~ 219 (389)
T PRK11788 156 -------------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR---GDLDAARALLKKALAADPQCVRASIL 219 (389)
T ss_pred -------------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence 234556666666665444321 111222222111 24577888899999999999888999
Q ss_pred HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 370 ~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
++..+.. .+++++|...|+++++..|... .+...+..... .+..+.+
T Consensus 220 la~~~~~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~------------------~g~~~~A 268 (389)
T PRK11788 220 LGDLALA-------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA------------------LGDEAEG 268 (389)
T ss_pred HHHHHHH-------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH------------------cCCHHHH
Confidence 9988865 4789999999999998766532 22222222221 2457889
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (697)
...+++++..+|..+. ....+.++...|++++|..++++++ ...|++..+.
T Consensus 269 ~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~~~ 319 (389)
T PRK11788 269 LEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQL-RRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHHHH
Confidence 9999999998887654 4888999999999999999999999 7889876544
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.4e-08 Score=102.85 Aligned_cols=220 Identities=9% Similarity=0.029 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
++.-.+...|+.+|..+|....+++..+.++.+.++.++-.+.+.+|. ...|.+.+++..+.++..-.+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~-~ldp~n~dvYyHRgQm~flL~---------- 408 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE-DLDPENPDVYYHRGQMRFLLQ---------- 408 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH-hcCCCCCchhHhHHHHHHHHH----------
Confidence 445567888999999999999999999999999999999899999999 789999999998888776655
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
+++.+..-|++|+..-|......+=+.++.|=...-+.....|+.+...++. ++.+...|.+.+...++++.|-
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhhHHhHHHHH
Confidence 3778888899998766644333333334433222225677888888876643 5778888899999999999999
Q ss_pred HHHHHHHhCCCC------CHH--HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhh
Q 005434 602 EMYKRFLALPRP------GLV--LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSET 673 (697)
Q Consensus 602 ~iy~~~i~~~p~------~~~--~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (697)
+-|..||.+-|. +.- +....+.+-+. + ++++|-.|..+|++..|.+........+||...|++++
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E------DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhchh-h------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 999999998776 322 33333434333 2 89999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 005434 674 ATAVYWRARKTL 685 (697)
Q Consensus 674 a~~vy~ral~~~ 685 (697)
|..+|+.+..--
T Consensus 556 AielFEksa~lA 567 (606)
T KOG0547|consen 556 AIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999887544
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=2.4e-08 Score=108.58 Aligned_cols=286 Identities=12% Similarity=0.023 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHH
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDM 423 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~ 423 (697)
.+.+...+.++++..|++...|..++..+.. .++++.|..+++.++...+... ....+...-...
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRR-------------RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------------cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3568888889999999999899999988865 4789999999999987533221 111122221111
Q ss_pred hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH-----H
Q 005434 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-----Q 498 (697)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----~ 498 (697)
. ..+..+.|..+|++++..+|.+...+...+.++...|++++|.+++++++ ...|.+. .
T Consensus 118 ~---------------~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ 181 (389)
T PRK11788 118 L---------------KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAH 181 (389)
T ss_pred H---------------HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHH
Confidence 1 13568899999999999888888899999999999999999999999998 5555532 2
Q ss_pred HHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC
Q 005434 499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG 576 (697)
Q Consensus 499 lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~ 576 (697)
.|..........+ +.+.+...|.++++..|.. ...|...+..+...+ +.+..+|+++....+..
T Consensus 182 ~~~~la~~~~~~~----------~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 247 (389)
T PRK11788 182 FYCELAQQALARG----------DLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEY-- 247 (389)
T ss_pred HHHHHHHHHHhCC----------CHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh--
Confidence 3333333333333 4788989999999876542 345555555554444 56778888877531110
Q ss_pred CCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch
Q 005434 577 GESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS 656 (697)
Q Consensus 577 ~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~ 656 (697)
....+...+..+...|++++|...+++++...|.. ..+...+.+....+ +.+.|..+|+.++...|++..
T Consensus 248 ---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g------~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 248 ---LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQE------GPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCcCHHH
Confidence 11122233444567899999999999999987755 34466777777777 899999999999999886665
Q ss_pred HHHHHHHHH--HhcCChhhHHHHHHHHHhh
Q 005434 657 LWRDYYSTE--TKLGTSETATAVYWRARKT 684 (697)
Q Consensus 657 lW~~y~~fE--~~~G~~~~a~~vy~ral~~ 684 (697)
+...+..+. ..+|+...+..++++.++.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 443333332 2367888888888888764
No 47
>PLN03077 Protein ECB2; Provisional
Probab=99.10 E-value=1.2e-06 Score=105.38 Aligned_cols=442 Identities=9% Similarity=-0.004 Sum_probs=295.5
Q ss_pred hHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHH
Q 005434 138 SGVARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH-PKVPGVWIYAAAWEFDHNLNVTAARA 213 (697)
Q Consensus 138 ~~~~r~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~-p~~~~lW~~~a~~e~~~~~~~~~aR~ 213 (697)
.....+..+|+++... .| |.-.+...+.-|...+ ...+..++..+.... +.+..+|-..+.... ..|+++.|+.
T Consensus 267 g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~ 344 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEK 344 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHH
Confidence 3467788999998765 35 5556677777777766 457888998887753 335778888888875 7899999999
Q ss_pred HHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCc
Q 005434 214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (697)
Q Consensus 214 ~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 293 (697)
+|++... | +...|...+.-..+.+....+.. ++..-. + ..+ .|+.
T Consensus 345 vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~-lf~~M~----------------~------~g~-----~Pd~---- 389 (857)
T PLN03077 345 VFSRMET--K-DAVSWTAMISGYEKNGLPDKALE-TYALME----------------Q------DNV-----SPDE---- 389 (857)
T ss_pred HHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHH-HHHHHH----------------H------hCC-----CCCc----
Confidence 9998653 3 34678877776655443333222 111000 0 000 0110
Q ss_pred chhhhhhh-hhhhhhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434 294 NMESQKSV-DLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA 371 (697)
Q Consensus 294 ~~~~~~~~-~~~~~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a 371 (697)
..+...+ .....+..+.+..+++.+++.- ..+...+..++++|.+.+ ..+.+..+++++.+ .+...|..+.
T Consensus 390 -~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~d~vs~~~mi 462 (857)
T PLN03077 390 -ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---CIDKALEVFHNIPE---KDVISWTSII 462 (857)
T ss_pred -eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC---CHHHHHHHHHhCCC---CCeeeHHHHH
Confidence 0000001 1112235678899999988763 334567788888888775 35778888888754 2456788887
Q ss_pred HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHH
Q 005434 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (697)
Q Consensus 372 ~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ 450 (697)
.-+.. .+..+.|..+|++.+..++. ...+...+..+-. .+.++.++.+
T Consensus 463 ~~~~~-------------~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~------------------~g~l~~~~~i 511 (857)
T PLN03077 463 AGLRL-------------NNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR------------------IGALMCGKEI 511 (857)
T ss_pred HHHHH-------------CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh------------------hchHHHhHHH
Confidence 77654 36788999999999876543 3244443333322 2557888999
Q ss_pred HHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHH
Q 005434 451 YEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL 529 (697)
Q Consensus 451 ye~al~~~~~-~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 529 (697)
+..++..+.. +.-+....++++.+.|++++|..++... +.+...|...|.-....|. .+++.++
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~----------~~~A~~l 576 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK----------GSMAVEL 576 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC----------HHHHHHH
Confidence 9988887443 4455667889999999999999998764 5567899999988877774 7889999
Q ss_pred HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHH
Q 005434 530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR 606 (697)
Q Consensus 530 f~~al~~-~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~ 606 (697)
|++.... +.|.. ..+...+.-+...+ +.+..+|+.+...... .+....+...++.+.+.|.+++|.+++++
T Consensus 577 f~~M~~~g~~Pd~--~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi----~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 577 FNRMVESGVNPDE--VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI----TPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHcCCCCCc--ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9998763 33322 12222233233223 5677788887632211 11334456677888899999999999998
Q ss_pred HHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434 607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARK 683 (697)
Q Consensus 607 ~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~ 683 (697)
.- ..|+...|...+.--...+ +++.++...+++++..|.++..+......-...|+.+.|.++......
T Consensus 651 m~--~~pd~~~~~aLl~ac~~~~------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 651 MP--ITPDPAVWGALLNACRIHR------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CC--CCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 62 2345667777665544455 788899999999999998888888888888889999999998776644
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.10 E-value=1.8e-07 Score=102.19 Aligned_cols=281 Identities=14% Similarity=0.008 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~-~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
...+.....++....|+..-...--++.....| ...+...|.++++..|.+. .+-..++...+ ..|+.+.|+..+++
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDK 178 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 345566678888888877666666666666656 4688999999999999875 57777888887 78999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
.++..|+++.++..+..+.+..++...+
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~d~~~a---------------------------------------------------- 206 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSGAWQAL---------------------------------------------------- 206 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHH----------------------------------------------------
Confidence 9999999988888877776655443322
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhc-CCCchH-------HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCC----CChh
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEA-LPSSFN-------LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL----VDPK 365 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~-~p~~~~-------~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p----~~~~ 365 (697)
...++...+. ..+..+ .+..+++.- . .+.....+..+....| +++.
T Consensus 207 ---------------~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~---~----~~~~~~~L~~~~~~~p~~~~~~~~ 264 (409)
T TIGR00540 207 ---------------DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA---M----ADEGIDGLLNWWKNQPRHRRHNIA 264 (409)
T ss_pred ---------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H----HhcCHHHHHHHHHHCCHHHhCCHH
Confidence 2222222222 111100 111111000 0 0111223444455555 6899
Q ss_pred hHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HH-HHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IF-DLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (697)
Q Consensus 366 ~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw-~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (697)
++..+|..... .+..+.|..+++++++..|+.. .. ..+... . .+. .++
T Consensus 265 l~~~~a~~l~~-------------~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~-~-~l~---------------~~~ 314 (409)
T TIGR00540 265 LKIALAEHLID-------------CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPI-P-RLK---------------PED 314 (409)
T ss_pred HHHHHHHHHHH-------------CCChHHHHHHHHHHHhhCCCcccchhHHHHHh-h-hcC---------------CCC
Confidence 99999998875 4789999999999999988765 11 111111 0 010 133
Q ss_pred HHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 444 ISHLLTVYEKAEAMGCLTE--DIAHRYVTLYLQLGKLDEARKLAA--KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~--~lw~~y~~l~~~~~~~~~A~~l~~--~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
.+.+...++++++..|.++ .+...++.++.+.|++++|++.++ +++ ...|++... .....+....|.
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~-~~La~ll~~~g~------- 385 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDL-AMAADAFDQAGD------- 385 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHH-HHHHHHHHHcCC-------
Confidence 5678999999999999999 888899999999999999999999 576 567877664 477777777764
Q ss_pred ccchHHHHHHHHHHHhhc
Q 005434 520 KADILSIFELLKCILTKV 537 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~ 537 (697)
.+.+.++|++++...
T Consensus 386 ---~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 386 ---KAEAAAMRQDSLGLM 400 (409)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 578888999987643
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.09 E-value=8.2e-06 Score=95.29 Aligned_cols=438 Identities=9% Similarity=-0.055 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+...|+.+++..|.+......++.+....| ...+...+++++...|.....-...|.... ..|+.+.|..+|++++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL 129 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 47789999999999998533337777666666 568999999999333334444444466664 6799999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (697)
+..|+++.++...+......+
T Consensus 130 ~~dP~n~~~l~gLa~~y~~~~----------------------------------------------------------- 150 (822)
T PRK14574 130 KKDPTNPDLISGMIMTQADAG----------------------------------------------------------- 150 (822)
T ss_pred hhCCCCHHHHHHHHHHHhhcC-----------------------------------------------------------
Confidence 999999888853322221111
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCC
Q 005434 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV 379 (697)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~ 379 (697)
..+.|...+++++...|..... .....++. .. .....+...+++++..+|++......+.......
T Consensus 151 --------q~~eAl~~l~~l~~~dp~~~~~-l~layL~~--~~-~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~-- 216 (822)
T PRK14574 151 --------RGGVVLKQATELAERDPTVQNY-MTLSYLNR--AT-DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN-- 216 (822)
T ss_pred --------CHHHHHHHHHHhcccCcchHHH-HHHHHHHH--hc-chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Confidence 1234555556655555543211 11111111 11 1122366667777777777766655554443221
Q ss_pred CCCCCCcCccchHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHH-hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDM-IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 380 ~~~~~~~~~~~~~~~~a~~vye~al~~~~~~-~lw~~yi~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
+....|.+...+--.-+... ..|..+-..-+.. .+.....+ ....-..++++..-|+..+..
T Consensus 217 -----------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~-----~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 217 -----------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS-----ETERFDIADKALADYQNLLTR 280 (822)
T ss_pred -----------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc-----chhhHHHHHHHHHHHHHHHhh
Confidence 22222222222111111111 1232221111110 00000000 000123567888888888874
Q ss_pred ---CCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHhh--ccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434 458 ---GCLTEDIA----HRYVTLYLQLGKLDEARKLAAKLCS--GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (697)
Q Consensus 458 ---~~~~~~lw----~~y~~l~~~~~~~~~A~~l~~~al~--~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 528 (697)
.|.....| .+.+-.+...|++.++.+.|+..-. ...|.-+..|..-..+. .+ ..+++..
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~--~~----------~P~kA~~ 348 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID--RR----------LPEKAAP 348 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh--cC----------CcHHHHH
Confidence 34332333 4566667778899999988877552 24577777776544433 22 2578888
Q ss_pred HHHHHHhhcChh-----h---hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCC-----CCCCCCChHHHH----HHHH
Q 005434 529 LLKCILTKVSAL-----E---SESLWLMALKFFMNQKHYFDKLVEIALISVAKDG-----GGESGFSLPSAI----INLV 591 (697)
Q Consensus 529 ~f~~al~~~p~~-----~---~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~-----~~~~~~~l~~~y----l~~~ 591 (697)
+|.+++..-++. + ...|.-.|++ ..+-+.+..+.+......+... +......=|..+ +..+
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999987643210 1 1233333322 1122556666666654222100 000011112222 2334
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS 671 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~ 671 (697)
.-.|++.+|-++++..+..-|.+..+.+.+++++...+ .+.+|..+++.+....|.+..+-...+.--...|+.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg------~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD------LPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 45799999999999999999999999999999999998 889999999998888776654444444444446899
Q ss_pred hhHHHHHHHHHhhcCCc
Q 005434 672 ETATAVYWRARKTLKDS 688 (697)
Q Consensus 672 ~~a~~vy~ral~~~~~~ 688 (697)
..|..+....+...|+.
T Consensus 501 ~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 501 HQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHhhCCCc
Confidence 99988888777777654
No 50
>PLN03077 Protein ECB2; Provisional
Probab=99.08 E-value=3e-06 Score=101.91 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (697)
Q Consensus 445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~ 524 (697)
+.|..+|++.+...+.+...+...+.-..+.|+.+.+.++...+++...+.+..+....|++..+.| +++
T Consensus 472 ~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G----------~~~ 541 (857)
T PLN03077 472 FEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG----------RMN 541 (857)
T ss_pred HHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----------CHH
Confidence 3444444444433222223333333333344444444444444443233333334444455555544 367
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHH
Q 005434 525 SIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQARE 602 (697)
Q Consensus 525 ~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~ 602 (697)
.+.++|... ++ ....|...+.-+...+ +.+..+|+++... +..+....+...+.-..+.|.+++|.+
T Consensus 542 ~A~~~f~~~----~~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 542 YAWNQFNSH----EK--DVVSWNILLTGYVAHGKGSMAVELFNRMVES-----GVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHHhc----CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 777777765 22 2456887777665555 6788888887642 111122234444555567799999999
Q ss_pred HHHHHHhC--CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 005434 603 MYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWR 680 (697)
Q Consensus 603 iy~~~i~~--~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~r 680 (697)
+|+.+... ..|+...|..++++--..| .++.|.++++.+- ...++.+|...+.-=..+|+.+.+..+.++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G------~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAG------KLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999843 3566778899999888888 8999999998752 124568898888877779999999888888
Q ss_pred HHhhcCCc
Q 005434 681 ARKTLKDS 688 (697)
Q Consensus 681 al~~~~~~ 688 (697)
+++.-|+.
T Consensus 683 l~~l~p~~ 690 (857)
T PLN03077 683 IFELDPNS 690 (857)
T ss_pred HHhhCCCC
Confidence 88765554
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.07 E-value=3.7e-06 Score=98.12 Aligned_cols=123 Identities=13% Similarity=-0.032 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCCChHHHH-HHH-HHHhCCHHHHHHHHHHHHhCCCC------------CHH---HHHH
Q 005434 558 HYFDKLVEIALISVAKDGGGESGFSLPSAI-INL-VIQKDGIQQAREMYKRFLALPRP------------GLV---LYQN 620 (697)
Q Consensus 558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y-l~~-~~~~~~~~~AR~iy~~~i~~~p~------------~~~---~~~~ 620 (697)
+.+..+|.+++..-.+.. .....+...- +-| +...+.+++|+.+.++....+|. +.. ....
T Consensus 344 ~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred HHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 677788887765321100 0011221000 111 23578899999999999886552 111 2222
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 621 CIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
.+..-.-.+ +...|-++++..+...|.++.+++.+++.+...|.+.+|..+++++...-|+.
T Consensus 422 ~a~~~~~~g------dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 422 LVQSLVALN------DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 233223345 88999999999999999999999999999999999999999997776665543
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.04 E-value=1.1e-06 Score=103.09 Aligned_cols=424 Identities=10% Similarity=0.040 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CCCHHHHHHHHH
Q 005434 160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC--PTSEELWVEYLR 234 (697)
Q Consensus 160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~p--~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~--p~~~~lW~~y~~ 234 (697)
.|..-+.-+.+.| ...+..+|+.+....| -++..+-..+.-.. ..++++.|+.++....+.- | +..++...+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~-~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 5666666555555 4678899998876543 24567777777774 7899999999998887643 4 3577777777
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhh-hhhhhhhhhHHH
Q 005434 235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV-DLFREQGLRVLQ 313 (697)
Q Consensus 235 ~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 313 (697)
+..+.+....+++.+ ..-.. ++. ..+...+ .....+..+.|.
T Consensus 167 ~y~k~g~~~~A~~lf-~~m~~-------------------------------~~~-----~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 167 MHVKCGMLIDARRLF-DEMPE-------------------------------RNL-----ASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHhcCCCHHHHHHHH-hcCCC-------------------------------CCe-----eeHHHHHHHHHHCcCHHHHH
Confidence 766655444444422 21100 000 0011111 112233567899
Q ss_pred HHHHHHHhcC--CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhh-CCCChhhHHHHHHhhcccCCCCCCCCcCccc
Q 005434 314 TIYSGAVEAL--PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD-FLVDPKYWDWLARLKMTDSVSKDGTSEDIVP 390 (697)
Q Consensus 314 ~iy~~al~~~--p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~-~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~ 390 (697)
.+|+..++.- |+. ..+..++..+...+ ....+..+...+.+. +..+..++..+...+.. .
T Consensus 210 ~lf~~M~~~g~~p~~-~t~~~ll~a~~~~~---~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k-------------~ 272 (697)
T PLN03081 210 ALFREMWEDGSDAEP-RTFVVMLRASAGLG---SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK-------------C 272 (697)
T ss_pred HHHHHHHHhCCCCCh-hhHHHHHHHHhcCC---cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH-------------C
Confidence 9999887653 332 23344444444332 234556666655554 33345567777777754 4
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL-TEDIAHRYV 469 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~-~~~lw~~y~ 469 (697)
+.++.|+.+|++... ++...|...+..... .+..+.|..+|++....+.. +...+...+
T Consensus 273 g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~------------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 273 GDIEDARCVFDGMPE--KTTVAWNSMLAGYAL------------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred CCHHHHHHHHHhCCC--CChhHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 789999999987632 334467666655433 25578999999998776432 456677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA 549 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y 549 (697)
..+.+.|.+++|.+++..+++..++.+..++...|+...+.|. ++.+.++|++..+ | ....|...
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~----------~~~A~~vf~~m~~--~---d~~t~n~l 397 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR----------MEDARNVFDRMPR--K---NLISWNAL 397 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC----------HHHHHHHHHhCCC--C---CeeeHHHH
Confidence 8888999999999999999866778888899999999888774 7899999998643 2 23458777
Q ss_pred HHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHH
Q 005434 550 LKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL--PRPGLVLYQNCIELE 625 (697)
Q Consensus 550 ~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~--~p~~~~~~~~~i~lE 625 (697)
+.-+...+ +.+..+|+++... +..+....+...+.-....|.+++|..+|+.+.+. ..|+...|..++++-
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAE-----GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 77665555 6788888887642 11112222334455456789999999999999863 345566788888888
Q ss_pred hccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 626 NNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 626 ~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
-..| .++.|.++|+.+- ...+..+|...+.--..+|+.+.+..++++.+..-++
T Consensus 473 ~r~G------~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 473 GREG------LLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HhcC------CHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 8888 8999999987641 1145578999998888999999999999988765554
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.01 E-value=1e-06 Score=96.36 Aligned_cols=283 Identities=9% Similarity=0.018 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHH
Q 005434 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMD 422 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~ 422 (697)
....+++.+.+..+..|+........|+.... .++.+.|...|+++.+..|... +-..++.....
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-------------~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-------------RGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 45778888888877777766667777787764 4789999999999998888764 22334444332
Q ss_pred HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH-----
Q 005434 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV----- 497 (697)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~----- 497 (697)
.+..+.|+..++..++..|.++.++...+.++...|+.++|.+++.+..+...++..
T Consensus 166 ------------------~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l 227 (409)
T TIGR00540 166 ------------------QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL 227 (409)
T ss_pred ------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 355789999999999999999999999999999999999999999998843233322
Q ss_pred --HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh
Q 005434 498 --QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--ESESLWLMALKFFMNQK--HYFDKLVEIALISV 571 (697)
Q Consensus 498 --~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~ 571 (697)
..|...+. .+. .+...+.+.++....|.. +...++..++..+...+ +.+..+++++++..
T Consensus 228 ~~~a~~~~l~----~~~----------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 228 EQKAEIGLLD----EAM----------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHHHHHHH----HHH----------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 22222221 111 111223455555556643 35788888888776665 57888888888643
Q ss_pred hhCCCCCCCCChH-HHHHHHH-HHhCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhccCCCCCcccHHHHHHHHH--
Q 005434 572 AKDGGGESGFSLP-SAIINLV-IQKDGIQQAREMYKRFLALPRPGL--VLYQNCIELENNLASVGDKDSLVNARKLFE-- 645 (697)
Q Consensus 572 ~~~~~~~~~~~l~-~~yl~~~-~~~~~~~~AR~iy~~~i~~~p~~~--~~~~~~i~lE~~~~~~~~~~~~~raR~lye-- 645 (697)
+.. .... ..+.... ...++.+++++..+++++..|.+. .+...+..+....+ +.+.|++.|+
T Consensus 294 pd~------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~------~~~~A~~~le~a 361 (409)
T TIGR00540 294 GDD------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG------EFIEAADAFKNV 361 (409)
T ss_pred CCc------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc------cHHHHHHHHHHh
Confidence 321 1110 1222221 234778999999999999999998 88888888888888 8999999999
Q ss_pred HHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 646 SALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 646 ~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
.++...|+... ...+.......|+.+.|.++|++|+.-+
T Consensus 362 ~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 362 AACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56666664444 5589999999999999999999997654
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.6e-05 Score=81.82 Aligned_cols=200 Identities=14% Similarity=0.126 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (697)
Q Consensus 445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~ 524 (697)
++--..|..|...+|.++++|..-+++..-.+++++|..=+++++ ...|.+.--+.+..-++-+.+ .++
T Consensus 377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~----------k~~ 445 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQH----------KIA 445 (606)
T ss_pred HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHH----------HHH
Confidence 344555666666666666666666666666666666666666666 555554333322222222222 255
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC--CCCCCChHH--HHHHHHHHhCCHH
Q 005434 525 SIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG--GESGFSLPS--AIINLVIQKDGIQ 598 (697)
Q Consensus 525 ~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~--~~~~~~l~~--~yl~~~~~~~~~~ 598 (697)
++...|+.+++++|. +..++..+++.+..++ +.+.+-|+.|+..-+.... +...+-+-. ..+.| .+++.
T Consensus 446 ~~m~~Fee~kkkFP~--~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw---k~d~~ 520 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPN--CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW---KEDIN 520 (606)
T ss_pred HHHHHHHHHHHhCCC--CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch---hhhHH
Confidence 566666666666664 2455555555554444 3455555555542111000 000011111 11223 38999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET 666 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~ 666 (697)
+|-++..+||+..|.+-..+..++.+|...+ ++++|-++||++...--+..++-..|.==|-
T Consensus 521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~------~i~eAielFEksa~lArt~~E~~~a~s~aeA 582 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKCEQAYETLAQFELQRG------KIDEAIELFEKSAQLARTESEMVHAYSLAEA 582 (606)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988889999999999999 9999999999999864444455444443333
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.95 E-value=2.2e-06 Score=93.25 Aligned_cols=260 Identities=14% Similarity=0.028 Sum_probs=176.5
Q ss_pred HHHHHHhc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHH
Q 005434 165 MEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNK 242 (697)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~ral~~~p~~~-~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~ 242 (697)
+......| ...+...|.++....|++. ...+..+.... ..|+.+.|...++++++..|+++.+...........++.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 33334445 4678899999999888864 34445577775 789999999999999999999887666666555444332
Q ss_pred HHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhc
Q 005434 243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA 322 (697)
Q Consensus 243 ~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~ 322 (697)
. .|..++....+.
T Consensus 204 ~-------------------------------------------------------------------~a~~~l~~l~k~ 216 (398)
T PRK10747 204 S-------------------------------------------------------------------SLLDILPSMAKA 216 (398)
T ss_pred H-------------------------------------------------------------------HHHHHHHHHHHc
Confidence 2 223333333322
Q ss_pred CCCchHHHH-----HHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHH
Q 005434 323 LPSSFNLRQ-----RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI 397 (697)
Q Consensus 323 ~p~~~~~~~-----~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~ 397 (697)
.+.+.+-.. .+......-......+....+.+.+.+..|+++..+..+|+..+. .|..+.|.
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~-------------~g~~~~A~ 283 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE-------------CDDHDTAQ 283 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH-------------CCCHHHHH
Confidence 211111000 111111110000112445555556556678899999999999875 47899999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005434 398 QVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK 477 (697)
Q Consensus 398 ~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~ 477 (697)
.+.+++++.-+...+...|.... .+..+++....++.++.+|.++.+...++.+..+.++
T Consensus 284 ~~L~~~l~~~~~~~l~~l~~~l~--------------------~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 284 QIILDGLKRQYDERLVLLIPRLK--------------------TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHhhcc--------------------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999766665666565431 1335778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 478 LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 478 ~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+++|++.+++++ ...|++.. +.....+....| +.+.+.+.|.+++..+
T Consensus 344 ~~~A~~~le~al-~~~P~~~~-~~~La~~~~~~g----------~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 344 WQEASLAFRAAL-KQRPDAYD-YAWLADALDRLH----------KPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHH-hcCCCHHH-HHHHHHHHHHcC----------CHHHHHHHHHHHHhhh
Confidence 999999999999 77788655 334455555555 3678888999998754
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.91 E-value=3.4e-06 Score=91.75 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHH-HHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWL-ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~-a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~ 424 (697)
...+++.+...... +++|.+...+ |..... .++.+.|...|+++.+..|+..+...........
T Consensus 100 ~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~-------------~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l- 164 (398)
T PRK10747 100 YQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQ-------------RGDEARANQHLERAAELADNDQLPVEITRVRIQL- 164 (398)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-
Confidence 34555555554333 2335554443 454343 4789999999999999888865322112111111
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH---
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL--- 501 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~--- 501 (697)
..+..+.|...+++.+..+|.++......+..+...|+.++|..++.+.. +..+.+.....
T Consensus 165 ---------------~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~ 228 (398)
T PRK10747 165 ---------------ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLE 228 (398)
T ss_pred ---------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHH
Confidence 13567899999999999999999999999999999999999999999888 44343322221
Q ss_pred --HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434 502 --LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG 575 (697)
Q Consensus 502 --~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~ 575 (697)
.++.+...... ..+.+. +.+..+.+|.. +...++..|+..+...+ +.+..+.+++++. +
T Consensus 229 ~~a~~~l~~~~~~-------~~~~~~----l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~--- 293 (398)
T PRK10747 229 QQAWIGLMDQAMA-------DQGSEG----LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-Q--- 293 (398)
T ss_pred HHHHHHHHHHHHH-------hcCHHH----HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C---
Confidence 12222211111 002333 33434434321 24677888887666655 5677777777652 1
Q ss_pred CCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 576 ~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
..+.+...|... ..++.+++.+..++.++..|.+..+...+..+-...+ +...||+.|++++...|++
T Consensus 294 ---~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~------~~~~A~~~le~al~~~P~~- 361 (398)
T PRK10747 294 ---YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG------EWQEASLAFRAALKQRPDA- 361 (398)
T ss_pred ---CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHhcCCCH-
Confidence 133444444443 3489999999999999999999999999999988888 8999999999999987754
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 656 SLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 656 ~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
..+..+.+.....|+.+.|..+|.+|+....+
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 44667899999999999999999999886643
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=1.2e-06 Score=99.58 Aligned_cols=256 Identities=9% Similarity=-0.037 Sum_probs=171.9
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHH--HHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLY--TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~y--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~ 466 (697)
.+.++.|...|++|++..|+.. .|..- +.+....... . ...+..+.|...+++|+..+|.++..|.
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~----------~~~~~~~~A~~~~~~Al~ldP~~~~a~~ 342 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-F----------DKQNAMIKAKEHAIKATELDHNNPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-c----------ccchHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3568899999999999988754 22211 1111111100 0 0134578999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHH
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW 546 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW 546 (697)
..+.++...|++++|...+++|+ ...|++...|..+..+....| +.+++...|++++..-|.......+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G----------~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAG----------QLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999 899999999988887777666 4788999999999877753222233
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 005434 547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN 626 (697)
Q Consensus 547 ~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~ 626 (697)
...+.+...+-+.+...+++++...++. .+.........+...|+.++|+..+.++....|.+...+......-.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 3333333333256667777776432221 12222223344557899999999999988877765554443333333
Q ss_pred ccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434 627 NLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARK 683 (697)
Q Consensus 627 ~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~ 683 (697)
..+ ++++..++..+...... ..-| ...|+.-+|+.+.+..+ .++.+
T Consensus 487 ~~g--------~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 487 QNS--------ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred ccH--------HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 333 47777777766654422 2333 67788889999888776 55543
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.87 E-value=7.7e-07 Score=84.91 Aligned_cols=192 Identities=18% Similarity=0.041 Sum_probs=130.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005434 471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMAL 550 (697)
Q Consensus 471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~ 550 (697)
=++..|++..|++-+++|+ +..|++...|.....+....|. .+.+.+-|++|++.-|.. ..+-.-|-
T Consensus 44 ~YL~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge----------~~~A~e~YrkAlsl~p~~--GdVLNNYG 110 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGE----------NDLADESYRKALSLAPNN--GDVLNNYG 110 (250)
T ss_pred HHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCCCc--cchhhhhh
Confidence 3455666666666666666 5666666666666666655553 455566666666544432 23444454
Q ss_pred HHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH---HHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005434 551 KFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN---LVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (697)
Q Consensus 551 ~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE 625 (697)
-|+...+ +.+..-|++|+... . -......|.+ -..+.|..+.|+..|++++...|........++.++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P--~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADP--A-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCC--C-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 4555444 34445555555421 1 1111222211 134689999999999999999999888899999999
Q ss_pred hccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 626 NNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 626 ~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
.+-+ +...||..+++..+..+.+. ++|+. |+++...||.+.+...-.+..+.||.+.
T Consensus 184 ~~~~------~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 184 YKAG------DYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred Hhcc------cchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9888 89999999999998877444 67775 7899999999999997777788888764
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.86 E-value=0.00019 Score=80.80 Aligned_cols=275 Identities=14% Similarity=0.142 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-chHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHhcCCHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIY-----AAAWEFDHNLNVTAAR 212 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~p~~~~lW~~-----~a~~e~~~~~~~~~aR 212 (697)
.+++++..|.||+...|.+.++-..++.++.+.|. .++-..|.++++..|...--|+. ++++.. ..+.-+.|-
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~-~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI-THNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 46677778888888888887777778888777773 46777788888887743333332 234443 344447777
Q ss_pred HHHHHhhhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCC
Q 005434 213 ALMQNGLRVCPT--SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (697)
Q Consensus 213 ~~~~r~l~~~p~--~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 290 (697)
++++.++..+.+ +..--..|+.+-+.......+-+.+........+.|+ ..|...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~-----~e~~~~------------------ 357 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD-----SEWDTD------------------ 357 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh-----hhhhhh------------------
Confidence 777777774432 1111222222222211111111111100000001110 011000
Q ss_pred CCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhC--CC-Chhh
Q 005434 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDF--LV-DPKY 366 (697)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~--p~-~~~~ 366 (697)
.-+...-.++-.+|+........+...... .+ ...+..+.++..+.... |. .+.+
T Consensus 358 --------------------~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L-~~~e~~e~ll~~l~~~n~~~~d~~dL 416 (895)
T KOG2076|consen 358 --------------------ERRREEPNALCEVGKELSYDLRVIRLMICLVHL-KERELLEALLHFLVEDNVWVSDDVDL 416 (895)
T ss_pred --------------------hhccccccccccCCCCCCccchhHhHhhhhhcc-cccchHHHHHHHHHHhcCChhhhHHH
Confidence 000000011111111110000001111110 11 12234455555544443 33 3667
Q ss_pred HHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHH
Q 005434 367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI 444 (697)
Q Consensus 367 w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (697)
..-+|+.++. .+.+..|...|-..+..-+... +|-.-...+.. .+..
T Consensus 417 ~~d~a~al~~-------------~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~------------------l~e~ 465 (895)
T KOG2076|consen 417 YLDLADALTN-------------IGKYKEALRLLSPITNREGYQNAFVWYKLARCYME------------------LGEY 465 (895)
T ss_pred HHHHHHHHHh-------------cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH------------------HhhH
Confidence 7777887765 4778889999988876554333 67666655543 3557
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 445 ~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
+.|...|+.++...|.+.+.-+..+.++.+.|++++|.++++...
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 899999999999999999999999999999999999999888744
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=1.2e-06 Score=86.74 Aligned_cols=200 Identities=15% Similarity=0.024 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~ 541 (697)
...+...+..+...|++++|...+++++ ...|.+...|.....+....+ +.+.+.+.|++++...|..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~al~~~~~~- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKAL-EHDPDDYLAYLALALYYQQLG----------ELEKAEDSFRRALTLNPNN- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC-
Confidence 4566667777777888888888888887 567777777776666665554 3677777788887765532
Q ss_pred hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434 542 SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ 619 (697)
Q Consensus 542 ~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~ 619 (697)
...|..+...+...+ +.+...|++++..... ......+..........|+++.|.+.|.+++...|.....+.
T Consensus 99 -~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 99 -GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 344444444443333 4566667766642110 011222233334456789999999999999999888888888
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434 620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKT 684 (697)
Q Consensus 620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~ 684 (697)
..+.+....+ +.++|...|++++...+.++..|...+......|+.+.+..+.+.+...
T Consensus 174 ~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 174 ELAELYYLRG------QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888887787 8999999999999987777777778888898999999999987776554
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.6e-05 Score=78.43 Aligned_cols=184 Identities=11% Similarity=0.029 Sum_probs=129.3
Q ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 440 ~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
..+.-++|...|++|+..||.....|...+.-+...++...|.+.|++|+ ..+|.+.+-|...-+.....+=
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~M------- 413 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKM------- 413 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcc-------
Confidence 34667899999999999999999999988888888899999999999999 8999999999765544332210
Q ss_pred ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~ 599 (697)
..=+.=.|++|+..-|+. ..+|.... +-..+.+.++.
T Consensus 414 ---h~YaLyYfqkA~~~kPnD--sRlw~aLG--------------------------------------~CY~kl~~~~e 450 (559)
T KOG1155|consen 414 ---HFYALYYFQKALELKPND--SRLWVALG--------------------------------------ECYEKLNRLEE 450 (559)
T ss_pred ---hHHHHHHHHHHHhcCCCc--hHHHHHHH--------------------------------------HHHHHhccHHH
Confidence 111222356666544433 45565433 22344567788
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---C-CCc-----hHHHHHHHHHHhcCC
Q 005434 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D-QNT-----SLWRDYYSTETKLGT 670 (697)
Q Consensus 600 AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~---~-~~~-----~lW~~y~~fE~~~G~ 670 (697)
|.+.|.+++.........+...+++.++++ +.+.|-..|++.+... | .++ -+| -++++.+.++
T Consensus 451 AiKCykrai~~~dte~~~l~~LakLye~l~------d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~ 522 (559)
T KOG1155|consen 451 AIKCYKRAILLGDTEGSALVRLAKLYEELK------DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcc
Confidence 888888888877776677777788877777 7788888888888743 2 111 456 4778888888
Q ss_pred hhhHHHHHHHHH
Q 005434 671 SETATAVYWRAR 682 (697)
Q Consensus 671 ~~~a~~vy~ral 682 (697)
.+.|....-+++
T Consensus 523 ~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 523 FDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHh
Confidence 887776444443
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.84 E-value=4.9e-06 Score=93.16 Aligned_cols=288 Identities=13% Similarity=0.065 Sum_probs=194.5
Q ss_pred cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHH
Q 005434 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM 423 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~ 423 (697)
..+.+..|+...++..|..+..|.++|..+.. +|++++|...+--|--..|.+. +|....+..++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-------------rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~- 219 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-------------RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ- 219 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------------cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Confidence 45789999999999999999999999999865 5889988887777766666654 88877766554
Q ss_pred hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH--
Q 005434 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL-- 501 (697)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~-- 501 (697)
.+.+++|+-.|.+||+.+|.+-++...++.++.+.|+...|...+.+++ .-+|+.--.|.
T Consensus 220 -----------------~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d 281 (895)
T KOG2076|consen 220 -----------------LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIED 281 (895)
T ss_pred -----------------cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHH
Confidence 4668999999999999999998988899999999999999999999999 77775322221
Q ss_pred ---HHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HH-HHHH------------
Q 005434 502 ---LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HY-FDKL------------ 563 (697)
Q Consensus 502 ---~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~-~~~l------------ 563 (697)
..++.....+ +.+.+.+.++.++.......+.+-...+++.+.... +. .+.+
T Consensus 282 ~i~~~~~~~~~~~----------~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 282 LIRRVAHYFITHN----------ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHHHHHHHHHhh----------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 2233333222 236666667777652111111111111222221111 00 0000
Q ss_pred -----------------------------HHHHHHhhhhCCC-------------CCCCCChHHHHHHH---HHHhCCHH
Q 005434 564 -----------------------------VEIALISVAKDGG-------------GESGFSLPSAIINL---VIQKDGIQ 598 (697)
Q Consensus 564 -----------------------------~~~a~~~~~~~~~-------------~~~~~~l~~~yl~~---~~~~~~~~ 598 (697)
+..++-.+..+.. .......+..|.+. +...|.+.
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 1111100000000 00011122334333 45678999
Q ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHH
Q 005434 599 QAREMYKRFLALPRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAV 677 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~-~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~v 677 (697)
.|-.+|..++..++.+ ..+|...+..+..++ ..+.|-..|++++...|.+.+.=+.-..+-...|+.+.|..+
T Consensus 432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~------e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 432 EALRLLSPITNREGYQNAFVWYKLARCYMELG------EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred HHHHHHHHHhcCccccchhhhHHHHHHHHHHh------hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 9999999999887655 458888888888888 889999999999999998888888888888899999977776
Q ss_pred HHH
Q 005434 678 YWR 680 (697)
Q Consensus 678 y~r 680 (697)
.++
T Consensus 506 L~~ 508 (895)
T KOG2076|consen 506 LEQ 508 (895)
T ss_pred Hhc
Confidence 665
No 63
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.82 E-value=4.6e-08 Score=102.73 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=106.5
Q ss_pred HHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHh
Q 005434 74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR 153 (697)
Q Consensus 74 i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~ 153 (697)
|.+|...|+.+|+.+|.++..|++||+|...+...-..+ .....+...+-.+||++||+.
T Consensus 1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------------~~~~~a~~E~klsilerAL~~ 60 (321)
T PF08424_consen 1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------------KAERRALAERKLSILERALKH 60 (321)
T ss_pred CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------------hhhHHHHHHHHHHHHHHHHHh
Confidence 357788999999999999999999999986653221100 011224566778999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhhCCC
Q 005434 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH--NLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~--~~~~~~aR~~~~r~l~~~p~ 224 (697)
+|++..||..|++.+.+.- ...+.+.+++++..+|+++.||+.|+.|.... .-+++.+|.+|.++|+....
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765 45789999999999999999999999998632 24689999999999988753
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.68 E-value=4.8e-06 Score=82.47 Aligned_cols=187 Identities=10% Similarity=-0.044 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.+...|++++..+|.+...|...+..+...|++++|.+.+++++ ...|.+...|..+..+....+
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~g---------- 113 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGTFLCQQG---------- 113 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcc----------
Confidence 457889999999999999999999999999999999999999999999 788998888888877776665
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~ 599 (697)
+.+++.+.|++++...+.......|......+...+ +.+...|++++...+. ....+..........|++++
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHHcCCHHH
Confidence 478888999999874322222334443333333333 5677888888764321 22333344555667899999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (697)
Q Consensus 600 AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~ 651 (697)
|...+++++...|.....+...+.+....+ +.+.++.+.+.+....
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALG------DVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhhC
Confidence 999999999987777776666777777777 8899999888877654
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.3e-05 Score=87.30 Aligned_cols=262 Identities=13% Similarity=0.059 Sum_probs=175.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCc---hHHHHH-HHHHHHHccccCcHHHHHHH-HHHHHhhCCCChhhHHHHHHh
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSS---FNLRQR-FFEIVEATNLAQSDDMHDKI-LSDMQRDFLVDPKYWDWLARL 373 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~---~~~~~~-~~~~~~~fe~~~~~~~~~~i-l~~~~~~~p~~~~~w~~~a~~ 373 (697)
.....|+-.+++.|..+|+.+-..-|-- +++... +|-+ .++.+-.. -+.++...|++|+.|+.++..
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL--------q~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL--------QDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH--------HhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 3345566667888999999887654442 222211 1111 11222333 345777899999999999988
Q ss_pred hcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (697)
Q Consensus 374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~ 453 (697)
+-. +++.+.|.+.|++|++-.|. .+|+-.+... ........+.|..-|..
T Consensus 431 fSL-------------Qkdh~~Aik~f~RAiQldp~----faYayTLlGh-------------E~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 431 FSL-------------QKDHDTAIKCFKRAIQLDPR----FAYAYTLLGH-------------ESIATEEFDKAMKSFRK 480 (638)
T ss_pred hhh-------------hhHHHHHHHHHHHhhccCCc----cchhhhhcCC-------------hhhhhHHHHhHHHHHHh
Confidence 753 58899999999999998886 3566555431 01234668999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (697)
Q Consensus 454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a 533 (697)
|+..+|.+...|....-.+.+.+.++.|.--+++|+ ..+|.+..+-.-.-....+.+. .+++.++|++|
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~----------~d~AL~~~~~A 549 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKR----------KDKALQLYEKA 549 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhh----------hhHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999987777666666666553 58889999999
Q ss_pred HhhcChhhhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Q 005434 534 LTKVSALESESLWLMALKFF-MNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR 612 (697)
Q Consensus 534 l~~~p~~~~~~lW~~y~~~~-~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p 612 (697)
+..-| ++....+.+.--++ ..+.+.+-..++.....++.. ..+.-....-..+.|+.+.|..=|.-|..+.|
T Consensus 550 ~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e------s~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 550 IHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKELVPQE------SSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch------HHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 86544 33344443322222 222233444445433322211 11111122234567888888888888888877
Q ss_pred CCHH
Q 005434 613 PGLV 616 (697)
Q Consensus 613 ~~~~ 616 (697)
...+
T Consensus 623 kg~~ 626 (638)
T KOG1126|consen 623 KGAQ 626 (638)
T ss_pred ccch
Confidence 7655
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.9e-05 Score=83.03 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
+....|.+..+..+|-..+..--+|--+...| ..++-.+=-+.+..+|..+--|+..+-+.+ ..|++..||+.|.++.
T Consensus 261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKat 339 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHHh
Confidence 44557888889999999888877777444555 346666777788899999999999999987 7899999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (697)
...|.-...|+.|...---.
T Consensus 340 ~lD~~fgpaWl~fghsfa~e------------------------------------------------------------ 359 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGE------------------------------------------------------------ 359 (611)
T ss_pred hcCccccHHHHHHhHHhhhc------------------------------------------------------------
Confidence 99999889999997432110
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCC
Q 005434 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV 379 (697)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~ 379 (697)
..-+.|...|..|-+..|.... -.-|+ =-+|...++.+++++.+.++...+|.+|-....++-....
T Consensus 360 -------~EhdQAmaaY~tAarl~~G~hl-P~LYl--gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--- 426 (611)
T KOG1173|consen 360 -------GEHDQAMAAYFTAARLMPGCHL-PSLYL--GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--- 426 (611)
T ss_pred -------chHHHHHHHHHHHHHhccCCcc-hHHHH--HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh---
Confidence 0124677888888877665421 01111 1123333457899999999999999998775554444332
Q ss_pred CCCCCCcCccchHHHHHHHHHHHHhhcCCch---h-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434 380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (697)
Q Consensus 380 ~~~~~~~~~~~~~~~~a~~vye~al~~~~~~---~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al 455 (697)
.+.+.+|...|+.++..+++. + .|.--..-+ .... -..+..+.|...|++|+
T Consensus 427 ----------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL-GH~~-------------Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 427 ----------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL-GHAY-------------RKLNKYEEAIDYYQKAL 482 (611)
T ss_pred ----------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH-HHHH-------------HHHhhHHHHHHHHHHHH
Confidence 366889999999999655432 1 243221110 0000 01345678999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
...|.+.+....-+-++...|+++.|.+-+-+|+ ...|++
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n 522 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDN 522 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCcc
Confidence 9999999998888888888999999999999999 788886
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.59 E-value=1.4e-05 Score=83.32 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHH
Q 005434 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIR 509 (697)
Q Consensus 451 ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~ 509 (697)
++.++..+|...+.|...+..+...|++++|...+++|+ ...| +.++.-...++++..
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al-~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL-ANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHH
Confidence 344444455667889999999999999999999999999 5665 556665556655543
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.58 E-value=0.0023 Score=69.94 Aligned_cols=390 Identities=13% Similarity=0.057 Sum_probs=214.8
Q ss_pred CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005434 173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG 251 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~-lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~ 251 (697)
+.+-.++.+..|..+|.++. +=+.-.... ..|+-+.|-....+|++..+.|+-.|.-|.-+--.
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~--~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~------------- 87 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTLN--CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS------------- 87 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchhh--cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-------------
Confidence 44556778888889998764 444444433 67999999999999999999999999887522100
Q ss_pred cccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHH
Q 005434 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~ 331 (697)
..+++.|...|++|+..-|++.++|.
T Consensus 88 ------------------------------------------------------dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 88 ------------------------------------------------------DKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred ------------------------------------------------------hhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 12567889999999999899988887
Q ss_pred HHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC---C
Q 005434 332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---P 408 (697)
Q Consensus 332 ~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~---~ 408 (697)
.+--+-.+... .+.....=..+++..|.....|+.+|.-... .+....|..+.+.-.++. |
T Consensus 114 DlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-------------~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 114 DLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHL-------------LGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhccCC
Confidence 76444443331 1223333456788899999999998876654 366777777766655554 4
Q ss_pred chhHHHHHHHHHH-HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 409 SSMIFDLYTKFLM-DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQLGKLDEARKL 484 (697)
Q Consensus 409 ~~~lw~~yi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~---~~~lw~~y~~l~~~~~~~~~A~~l 484 (697)
++..+..-..++- .....+ .+ ..+.+++......+. ....-..-++++.+.+++++|..+
T Consensus 178 s~~~~e~se~~Ly~n~i~~E-------------~g---~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIE-------------AG---SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------------cc---cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 4332222111111 110000 00 112222222222111 112333457888889999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh--------------hhHHHHHHHH
Q 005434 485 AAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--------------ESESLWLMAL 550 (697)
Q Consensus 485 ~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--------------~~~~lW~~y~ 550 (697)
+...+ ..+|++.+-...+....-.... ..+.+-.+|...-...|-. +.......|+
T Consensus 242 y~~Ll-~rnPdn~~Yy~~l~~~lgk~~d---------~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 242 YRRLL-ERNPDNLDYYEGLEKALGKIKD---------MLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHHHH-hhCchhHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 99999 7899876655544433311100 0111112222211111100 0011111111
Q ss_pred HHHHhhh-----HHHHH---------HHHHHHHhhhhCC-----------CC--CCCCChHHHHH--HHHHHhCCHHHHH
Q 005434 551 KFFMNQK-----HYFDK---------LVEIALISVAKDG-----------GG--ESGFSLPSAII--NLVIQKDGIQQAR 601 (697)
Q Consensus 551 ~~~~~~~-----~~~~~---------l~~~a~~~~~~~~-----------~~--~~~~~l~~~yl--~~~~~~~~~~~AR 601 (697)
.-....+ ..++. +.++.+....... +. ++...+|..|. .-....|.++.|.
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 1111111 01111 2222222111000 00 11223344331 1123468889999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434 602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW 679 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ 679 (697)
.....||..+|+-+++|+.=+.+-...| +++.|-.+++.|-+....+.-+=-.++..-.+....+.|..+..
T Consensus 392 ~yId~AIdHTPTliEly~~KaRI~kH~G------~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 392 EYIDLAIDHTPTLIELYLVKARIFKHAG------LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 9999999988888888877777766666 77788888888776643222232346666666666666655543
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.55 E-value=0.0033 Score=70.02 Aligned_cols=441 Identities=17% Similarity=0.112 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (697)
Q Consensus 138 ~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~ 216 (697)
.+.-.+.-+++--+..|.++..+|-...-+....| +..+.+.|++++...-.....|..++.-.. ..|.-..|-.+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~s-aag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYS-AAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH-HhccchHHHHHHH
Confidence 34445556666666778888899987776666666 678899999998877777788988877664 6677788999999
Q ss_pred HhhhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcc
Q 005434 217 NGLRVC--PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (697)
Q Consensus 217 r~l~~~--p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (697)
..+... |.+..+.+...++-......++ .
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~e---e---------------------------------------------- 412 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVE---E---------------------------------------------- 412 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhh---h----------------------------------------------
Confidence 999888 6555555555544332111100 0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHh---cCCCchHHHHHHHHHHHHcccc-C-----cHHHHHHHHHHHHhhCCCChh
Q 005434 295 MESQKSVDLFREQGLRVLQTIYSGAVE---ALPSSFNLRQRFFEIVEATNLA-Q-----SDDMHDKILSDMQRDFLVDPK 365 (697)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~al~---~~p~~~~~~~~~~~~~~~fe~~-~-----~~~~~~~il~~~~~~~p~~~~ 365 (697)
+.+-|..+...+-. .++.-..+..-..--+...... . .....-..++++++.-|+||.
T Consensus 413 -------------gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 413 -------------GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred -------------HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 01111111111100 0000000000000000000000 0 012233346666777777776
Q ss_pred hHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (697)
Q Consensus 366 ~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (697)
.-+++|-.+-. .++++.|.+.-.++++-.+... -|...+-.. . .++.
T Consensus 480 ~if~lalq~A~-------------~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl-S-----------------a~kr 528 (799)
T KOG4162|consen 480 VIFYLALQYAE-------------QRQLTSALDYAREALALNRGDSAKAWHLLALVL-S-----------------AQKR 528 (799)
T ss_pred HHHHHHHHHHH-------------HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-h-----------------hhhh
Confidence 65555555433 3567777777777776654332 444333211 1 1344
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHH---------HHHHHH-Hhcc-
Q 005434 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL---------RISVEI-RCVT- 512 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~---------~i~l~~-~~~~- 512 (697)
...|..+-+.++...+.+..+-..-+.++...|+.++|...+...+ .+|.. .+.++- +.+-
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L--------~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL--------ALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH--------HHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 5566666666666655555555555666666677777666655544 46651 111111 1110
Q ss_pred cCCCCCCccc--hHHHHH---------HHHHHHhh---cChhh-----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh
Q 005434 513 RNSFSPSKAD--ILSIFE---------LLKCILTK---VSALE-----SESLWLMALKFFMNQK--HYFDKLVEIALISV 571 (697)
Q Consensus 513 ~~~~~~~~~~--~~~~~~---------~f~~al~~---~p~~~-----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~ 571 (697)
++...+.+++ -..+-. .|+..+.. .|.++ ...+|...++++...+ +.+......|-+.+
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 0000011000 000000 01111111 11111 2568888777665433 33433333333322
Q ss_pred hhCCCCCCCCChHHHHHH--HHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh
Q 005434 572 AKDGGGESGFSLPSAIIN--LVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA 649 (697)
Q Consensus 572 ~~~~~~~~~~~l~~~yl~--~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~ 649 (697)
+ ...+..|.. -....|...+|...|..++...|..+......+.+-...|++ .+...|.+.-.|++
T Consensus 681 ~--------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----~la~~~~~L~dalr 748 (799)
T KOG4162|consen 681 P--------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----RLAEKRSLLSDALR 748 (799)
T ss_pred h--------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----chHHHHHHHHHHHh
Confidence 1 112222322 234568899999999999999999988888878777777744 77888889999999
Q ss_pred hCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC-Ccc-ccc
Q 005434 650 TYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK-DST-ALT 692 (697)
Q Consensus 650 ~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~-~~~-~f~ 692 (697)
..|.+++.|..-...-+..|+.+.|..+|.-|++-=+ +|+ .|.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 9999999999999999999999999999999876543 333 554
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.0024 Score=67.10 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=161.3
Q ss_pred hhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC
Q 005434 305 REQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK 381 (697)
Q Consensus 305 ~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~ 381 (697)
...+.+.|..+|+..+++.|-.+ ++....+ |.+-......-++.. .....---|++.+..|.++-.
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~----v~~idKyR~ETCCiIaNYYSl----- 342 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQN----VSNIDKYRPETCCIIANYYSL----- 342 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHH----HHHhccCCccceeeehhHHHH-----
Confidence 34578899999999999876543 2222221 111000000112222 222222336777777777743
Q ss_pred CCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC
Q 005434 382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460 (697)
Q Consensus 382 ~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~ 460 (697)
.+..++|...|++||+-.|.-- .|..-=.=.. .-++...|...|.+|++.+|.
T Consensus 343 --------r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv------------------EmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 343 --------RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV------------------EMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred --------HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH------------------HhcccHHHHHHHHHHHhcCch
Confidence 5789999999999999888643 4542111001 123467899999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
+...|...++.+...+-+.=|.-.+++|+ ..-|++..+|....+...+.+ .++++.+-|.+|+......
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~----------~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLN----------RLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhccccc
Confidence 99999999999999999998999999999 788999999999998887765 3788888999998755432
Q ss_pred hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH---HHHHHHHHhCCHHHHHHHHHHHH
Q 005434 541 ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS---AIINLVIQKDGIQQAREMYKRFL 608 (697)
Q Consensus 541 ~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~---~yl~~~~~~~~~~~AR~iy~~~i 608 (697)
..-+|.. ++..+..+ +.+-..|++.+........ ..+.+.. ..+.|..+.+++++|-..-.+++
T Consensus 466 -~~~l~~L-akLye~l~d~~eAa~~yek~v~~~~~eg~--~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 -GSALVRL-AKLYEELKDLNEAAQYYEKYVEVSELEGE--IDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -hHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3445543 34444333 3455667776653211110 1222222 23556667777777765444443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=98.51 E-value=2.7e-05 Score=88.59 Aligned_cols=218 Identities=11% Similarity=-0.068 Sum_probs=150.0
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ---------LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~---------~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
.+..+.|...|++|+..+|.++..|...+..+.. .+++++|...+++|+ ...|++...|.....+....+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al-~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT-ELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcc
Confidence 3557899999999999999998888766654432 234789999999999 899999999988777666555
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN 589 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~ 589 (697)
+.+++...|++|+...|.. ...|..+...+...+ +.+...+++++..-+. ........+.
T Consensus 353 ----------~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~ 414 (553)
T PRK12370 353 ----------EYIVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLW 414 (553)
T ss_pred ----------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHH
Confidence 4788999999999887754 345554444343333 5678888888764221 1111111122
Q ss_pred HHHHhCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhc
Q 005434 590 LVIQKDGIQQAREMYKRFLALP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKL 668 (697)
Q Consensus 590 ~~~~~~~~~~AR~iy~~~i~~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~ 668 (697)
.....|++++|...+++++... |.....+...+.+...+| +.+.|+..|+++....|.+...+..-...-...
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G------~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG------KHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC------CHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 2445788999999999999875 445555555555555677 899999999998776665544444444333344
Q ss_pred CChhhHHHHHHHHHhhc
Q 005434 669 GTSETATAVYWRARKTL 685 (697)
Q Consensus 669 G~~~~a~~vy~ral~~~ 685 (697)
| +.+...+++.++..
T Consensus 489 g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 489 S--ERALPTIREFLESE 503 (553)
T ss_pred H--HHHHHHHHHHHHHh
Confidence 4 46777666655543
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.41 E-value=2.8e-05 Score=81.09 Aligned_cols=233 Identities=13% Similarity=-0.030 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
...+.+..-+.+.|...+-.. .-..|... ..+. ...+..+.|+..|++|+..+|.++..|...
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~--g~~~-------------~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 104 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYER--GVLY-------------DSLGLRALARNDFSQALALRPDMADAYNYL 104 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHH--HHHH-------------HHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 456677788888887554221 11222211 1110 013557889999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
+..+...|++++|...+++++ ...|++...|..........+ +.+.+.+.|++++...|......+|..
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g----------~~~eA~~~~~~al~~~P~~~~~~~~~~ 173 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAYLNRGIALYYGG----------RYELAQDDLLAFYQDDPNDPYRALWLY 173 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999 789999999988777766555 478899999999987765433345543
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHh-------CCCCCHHHHHHH
Q 005434 549 ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLA-------LPRPGLVLYQNC 621 (697)
Q Consensus 549 y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~-------~~p~~~~~~~~~ 621 (697)
... .....+.+...|+++.....+ ..|. +.......|....+ ..++.+.. ..|.....|...
T Consensus 174 l~~-~~~~~~~A~~~l~~~~~~~~~--------~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~L 242 (296)
T PRK11189 174 LAE-SKLDPKQAKENLKQRYEKLDK--------EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYL 242 (296)
T ss_pred HHH-ccCCHHHHHHHHHHHHhhCCc--------cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 221 111124555566555432211 1121 11111223444333 23343332 222334556666
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHH
Q 005434 622 IELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTET 666 (697)
Q Consensus 622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~ 666 (697)
.......| +.+.|+..|++|+..+| +.++.=..-++++.
T Consensus 243 g~~~~~~g------~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 243 AKYYLSLG------DLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHCC------CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 66677777 89999999999999876 44444333333333
No 73
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.38 E-value=2.3e-06 Score=76.46 Aligned_cols=111 Identities=19% Similarity=0.332 Sum_probs=85.9
Q ss_pred HHhhHHHHHHHhCCC---CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHH
Q 005434 75 VKQRRKFEYRLKRPS---PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV 151 (697)
Q Consensus 75 ~~kR~~fE~~l~r~~---~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral 151 (697)
-++|..||..|..-. ..+..|++||.|-.+.. .. .+...++..+++||+
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~------------------------p~----~~~~~~L~~lLer~~ 53 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENY------------------------PS----GGKQSGLLELLERCI 53 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHC------------------------TT----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHC------------------------CC----CCchhHHHHHHHHHH
Confidence 467999999999866 66899999999964321 10 123466778999999
Q ss_pred HhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 152 MRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 152 ~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
+.|.++ +++|..|++++. ....+|.-+... ..+.+.+|+.+|.+. +..|++..|..||++|+
T Consensus 54 ~~f~~~~~Y~nD~RylkiWi~ya~~~~-----~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 54 RKFKDDERYKNDERYLKIWIKYADLSS-----DPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTTSGGGTT-HHHHHHHHHHHTTBS-----HHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhC
Confidence 999775 468888887643 677888888764 455789999999999 68999999999999986
No 74
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.38 E-value=1.1e-05 Score=84.90 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=113.3
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGK------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~ 515 (697)
..-|++.+..+|.+.+.|+.++++-...-. .+....++++|+ ..+|++..||..|+..-.+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL-~~np~~~~L~l~~l~~~~~~~---- 79 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERAL-KHNPDSERLLLGYLEEGEKVW---- 79 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhC----
Confidence 345788889999999999999998765422 344557899999 679999999999998776543
Q ss_pred CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHhhhhCCCCC-----CC-----
Q 005434 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-----HYFDKLVEIALISVAKDGGGE-----SG----- 580 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-----~~~~~l~~~a~~~~~~~~~~~-----~~----- 580 (697)
+.+.+.+.+++++...|. +..||..|++|...+- ..++.+|.+++..+....... ..
T Consensus 80 ------~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~ 151 (321)
T PF08424_consen 80 ------DSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE 151 (321)
T ss_pred ------CHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Confidence 357788889999987765 5799999999887642 578889999988775432211 01
Q ss_pred --CChHHHHHHHHHHhCCHHHHHHHHHHHHhC
Q 005434 581 --FSLPSAIINLVIQKDGIQQAREMYKRFLAL 610 (697)
Q Consensus 581 --~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~ 610 (697)
..++..+..|+.+.|-.+.|-.+++-.++.
T Consensus 152 ~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 152 FMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 111233566778899999999999999985
No 75
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.00044 Score=75.68 Aligned_cols=257 Identities=14% Similarity=0.138 Sum_probs=177.9
Q ss_pred chHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhhCCC--------CHHHHHHHHHHHHHHHHHH
Q 005434 174 GRMKKVLAQVIRFHPKVPGVWIY--AAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEYLRMELTYLNKL 243 (697)
Q Consensus 174 ~~~~~~~~ral~~~p~~~~lW~~--~a~~e~~~~~~~~~aR~~~~r~l~~~p~--------~~~lW~~y~~~E~~~~~~~ 243 (697)
..+..+|++.-..+++.+ |+. .++-.+ ..++...|+++|+..=+.-|- |..||..==.+++.+....
T Consensus 336 ~~A~~~~~klp~h~~nt~--wvl~q~GrayF-El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTG--WVLSQLGRAYF-ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHhhHHhcCCch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 468899999666667655 764 344443 257999999999999998883 3467777666666543221
Q ss_pred HHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhh-hhhhhHHHHHHHHHHhc
Q 005434 244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR-EQGLRVLQTIYSGAVEA 322 (697)
Q Consensus 244 ~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~iy~~al~~ 322 (697)
.... .+.+...|-. + -+.+. .++-++|...|++|++-
T Consensus 413 -----Li~~---------~~~sPesWca--------~--------------------GNcfSLQkdh~~Aik~f~RAiQl 450 (638)
T KOG1126|consen 413 -----LIDT---------DPNSPESWCA--------L--------------------GNCFSLQKDHDTAIKCFKRAIQL 450 (638)
T ss_pred -----HHhh---------CCCCcHHHHH--------h--------------------cchhhhhhHHHHHHHHHHHhhcc
Confidence 1111 1123334432 1 11221 12468999999999987
Q ss_pred CCCchHHHHHHHHHHHHccccC--cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHH
Q 005434 323 LPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY 400 (697)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~--~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vy 400 (697)
-|.- .|.-.+.-+|... ..+.+..-++.++...|.+...|+-++..+++ .++++.|.-.|
T Consensus 451 dp~f-----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-------------qek~e~Ae~~f 512 (638)
T KOG1126|consen 451 DPRF-----AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-------------QEKLEFAEFHF 512 (638)
T ss_pred CCcc-----chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-------------cchhhHHHHHH
Confidence 6641 1111222233211 23567777899999999999999999999986 58899999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 005434 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE 480 (697)
Q Consensus 401 e~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~ 480 (697)
++|++..|+...-.-++..... ..+..++|..+|++|+..+|+++---..-+.++...+++++
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~-----------------~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQH-----------------QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHH-----------------HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 9999999987644444443332 23567899999999999999998777777888999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 481 ARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 481 A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
|...++..- ...|+..-+...-.......+
T Consensus 576 al~~LEeLk-~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 576 ALQELEELK-ELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred HHHHHHHHH-HhCcchHHHHHHHHHHHHHHc
Confidence 999999877 788987666665555555444
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2.3e-05 Score=84.05 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~-~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
+..+.-.||-|+.+.|.+.+.|....-.--.+..+ .+..++.|||.+.|++-.+=+..|--.. ..|.-..|-+.|..+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKMLDKW 379 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 55667788888888888888887666554444443 6788888888888888776666555554 566677788888888
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
++.+|.. .|+ ..+... -.++. +
T Consensus 380 i~~~p~y--~~l--------------------~~a~~~---------------------~~~~~----~----------- 401 (579)
T KOG1125|consen 380 IRNKPKY--VHL--------------------VSAGEN---------------------EDFEN----T----------- 401 (579)
T ss_pred HHhCccc--hhc--------------------cccCcc---------------------ccccC----C-----------
Confidence 8888751 111 100000 00000 0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCC--CChhhHHHHHHhhcc
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL--VDPKYWDWLARLKMT 376 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p--~~~~~w~~~a~~~l~ 376 (697)
+.++++ .. + ..+..++-.+....| .++++...++-++..
T Consensus 402 ----------------------~s~~~~-~~---l-------------~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 402 ----------------------KSFLDS-SH---L-------------AHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred ----------------------cCCCCH-HH---H-------------HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 000000 00 0 111122222333344 457777777666643
Q ss_pred cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (697)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al 455 (697)
.+.+++|.+.|+.||..-|++. ||..+=..+-+ . ..-+.|...|.+|+
T Consensus 443 -------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-----~-------------~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 443 -------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-----G-------------NRSEEAISAYNRAL 491 (579)
T ss_pred -------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-----C-------------cccHHHHHHHHHHH
Confidence 4889999999999999999887 99987543321 1 22468999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
+..|.....|...+--.+..|.+++|.+.+-.||
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999987777777766778899999988887777
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00046 Score=66.31 Aligned_cols=191 Identities=11% Similarity=-0.066 Sum_probs=138.1
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
.++...|+.-+++|++.+|.++..|...+..+...|..+.|.+-|++|+ ...|++.++-..|--++...|.
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FLC~qg~-------- 118 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFLCAQGR-------- 118 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHHHhCCC--------
Confidence 3568899999999999999999999999999999999999999999999 7999999999999999988774
Q ss_pred cchHHHHHHHHHHHhhcChhhhHHHHHH--HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434 521 ADILSIFELLKCILTKVSALESESLWLM--ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~--y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~ 598 (697)
.+++...|++|+..-.-..-..-|.- ++.+-....+.++..|++++..-+.. +.............|++-
T Consensus 119 --~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 119 --PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYKAGDYA 190 (250)
T ss_pred --hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccch
Confidence 78899999999873211111112211 11110111257888999999764322 122223344456789999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN 654 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~ 654 (697)
.||..+++...-.+.+..-..--|.|+..+| +.+.+-..=.+....+|.+
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g------d~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLG------DRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCCc
Confidence 9999999998877777664455588999888 6555555444444555643
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=9e-05 Score=85.14 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=122.0
Q ss_pred HHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccc
Q 005434 353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET 431 (697)
Q Consensus 353 l~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~ 431 (697)
+..+.++||+++.....+|+.... .+..+.|..+++.+++..|... .+..|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~-------------~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--------- 132 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEA-------------AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--------- 132 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---------
Confidence 456778899999999999999875 5889999999999999998765 55566655543
Q ss_pred cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
.+.++.|+..+++++..+|.+.......+..+...|.+++|..+|++++ .++|+....|..+.......|
T Consensus 133 ---------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 133 ---------QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred ---------hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcC
Confidence 3568899999999999999999999999999999999999999999999 689999999999998888777
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
. .+.+...|++|++...
T Consensus 203 ~----------~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 203 A----------LWRARDVLQAGLDAIG 219 (694)
T ss_pred C----------HHHHHHHHHHHHHhhC
Confidence 4 6888888999988653
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.05 E-value=0.00011 Score=71.53 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALMQ 216 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~--~~~aR~~~~ 216 (697)
.......+++++...|++.+.|......+...+ +..+...|++++...|+++.+|..++...+...|+ .+.|+.+++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 456677899999999999999999999988877 57899999999999999999999999854235666 599999999
Q ss_pred HhhhhCCCCHHHHHHHHHHH
Q 005434 217 NGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 217 r~l~~~p~~~~lW~~y~~~E 236 (697)
++++..|++...+...+...
T Consensus 135 ~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 135 KALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHhCCCChhHHHHHHHHH
Confidence 99999999877666555433
No 80
>PLN02789 farnesyltranstransferase
Probab=98.05 E-value=0.004 Score=65.25 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM 215 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~--~~~aR~~~ 215 (697)
..++..++..++..+|.++..|......+...+ .......+++++..+|++..+|..-.... +..|. .+.+..++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l-~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA-EKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH-HHcCchhhHHHHHHH
Confidence 458889999999999999999987777766665 35788899999999999999998765444 34554 36788999
Q ss_pred HHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434 216 QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (697)
Q Consensus 216 ~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (697)
++++...|.+...|..-..+....+
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~------------------------------------------------------- 156 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLG------------------------------------------------------- 156 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhh-------------------------------------------------------
Confidence 9999999998888876543322111
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-cCc---HHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQS---DDMHDKILSDMQRDFLVDPKYWDWLA 371 (697)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~~~---~~~~~~il~~~~~~~p~~~~~w~~~a 371 (697)
.++.+...++++|+..|.+...|..-.-++...+. +.. .+.......+++...|++...|.++.
T Consensus 157 ------------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 157 ------------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred ------------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 12356677888888777777777665544433311 111 12344556688999999999999887
Q ss_pred HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc
Q 005434 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS 409 (697)
Q Consensus 372 ~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~ 409 (697)
....... . ..+....|...+.++++..|.
T Consensus 225 ~ll~~~~-~--------~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 225 GLFKDDK-E--------ALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHhcCC-c--------ccccchhHHHHHHHhhcccCC
Confidence 7764310 0 012234477777777765444
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0037 Score=67.37 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (697)
Q Consensus 309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~ 388 (697)
+.....|.+..++..|.+.+..--.+-.+- +.++ ....-.+=-+++..+|+.+..|+..+-+++.
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~--el~~-~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~------------ 324 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLY--ELGK-SNKLFLLSHKLVDLYPSKALSWFAVGCYYLM------------ 324 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHH--Hhcc-cchHHHHHHHHHHhCCCCCcchhhHHHHHHH------------
Confidence 455666666666666655433222222221 2221 1222233456888999999999999999886
Q ss_pred cchHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC--CcHHHH
Q 005434 389 VPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC--LTEDIA 465 (697)
Q Consensus 389 ~~~~~~~a~~vye~al~~~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~--~~~~lw 465 (697)
.++...||..|.++..-.|+ +.-|..|-...-. .+.-+.+...|-.|-..-| .-|.++
T Consensus 325 -i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------------------e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 325 -IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------------------EGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred -hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh------------------cchHHHHHHHHHHHHHhccCCcchHHH
Confidence 36788899999998776665 3367766543221 2446788889988877644 346666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHH
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SES 544 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~ 544 (697)
+.. =+.+.++++-|.+.+..|+ ..+|.++-+-..-.-+.- +.+...++...|++++..++... ...
T Consensus 386 lgm--ey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay----------~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 386 LGM--EYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAY----------TYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred HHH--HHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheee----------hHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 532 1334678888999999999 788887544322111000 11135666667777764332211 011
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005434 545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL 624 (697)
Q Consensus 545 lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~l 624 (697)
.|.-.. ...-.-..+.+.++.|-..|++++..+|.+...+..-+.+
T Consensus 453 ~w~p~~----------------------------------~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 453 FWEPTL----------------------------------NNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred chhHHH----------------------------------HhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 343211 1111112234455666666666666666666555554444
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHhhCCCCc---hHHHHHHH
Q 005434 625 ENNLASVGDKDSLVNARKLFESALATYDQNT---SLWRDYYS 663 (697)
Q Consensus 625 E~~~~~~~~~~~~~raR~lye~al~~~~~~~---~lW~~y~~ 663 (697)
...+| +++.|-+-|.+++-..|.+. ++...+++
T Consensus 499 y~llg------nld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 499 YHLLG------NLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhc------ChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44555 56666666666666655331 44444444
No 82
>PLN02789 farnesyltranstransferase
Probab=98.01 E-value=0.0083 Score=62.86 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhc
Q 005434 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA 425 (697)
Q Consensus 347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~ 425 (697)
+.+-.+++++++..|++...|...+...... ...++.+...++++++..|... +|..- .+....+.
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L------------~~~l~eeL~~~~~~i~~npknyqaW~~R-~~~l~~l~ 120 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEAL------------DADLEEELDFAEDVAEDNPKNYQIWHHR-RWLAEKLG 120 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHc------------chhHHHHHHHHHHHHHHCCcchHHhHHH-HHHHHHcC
Confidence 5677778889999999999998877665431 1257889999999999888764 66532 22222110
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
....+.....+++++..+|.+...|..-.-.+...|.++++.+.+.+++ ...|.+...|..+..
T Consensus 121 ---------------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 121 ---------------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDVRNNSAWNQRYF 184 (320)
T ss_pred ---------------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCCCchhHHHHHHH
Confidence 1123567888999999999999999988888888999999999999999 788999999988876
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFF 553 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~ 553 (697)
+..+.+..+. .+ ...++..+...++|...|... ..|......+
T Consensus 185 vl~~~~~l~~--~~-~~~e~el~y~~~aI~~~P~N~--SaW~Yl~~ll 227 (320)
T PLN02789 185 VITRSPLLGG--LE-AMRDSELKYTIDAILANPRNE--SPWRYLRGLF 227 (320)
T ss_pred HHHhcccccc--cc-ccHHHHHHHHHHHHHhCCCCc--CHHHHHHHHH
Confidence 5544321100 00 013445556678888877654 5576444333
No 83
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0036 Score=61.05 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (697)
Q Consensus 310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~ 389 (697)
+.|..+|++.++.-|.+..++.+=+-+...-+. ...+-+-+...+..||.+++.|..+|.+++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK---~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~------------- 166 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK---NLEAIKELNEYLDKFMNDQEAWHELAEIYLS------------- 166 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------------
Confidence 456677777777667665555444444433332 2356666788899999999999999999986
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~ 461 (697)
.+.+++|.-.||+.+-..|.+. .+..|.+..--.. ...++.-+|..|++|+..+|.+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g---------------g~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG---------------GAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHhChHh
Confidence 4889999999999999999876 5556665532211 1245778999999999988854
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.97 E-value=0.056 Score=60.59 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--p~~~~lW~~~a~~e~~~~~~~~~aR~~~~ 216 (697)
...+...||+++.---+..+.|..+.--....+ ..++-++.+.++... |.++...+++++.+.+..+.++.+-.+-+
T Consensus 339 f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 339 FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 344556777777666677889988877555556 468899999999999 88899999999999988899888888888
Q ss_pred HhhhhC
Q 005434 217 NGLRVC 222 (697)
Q Consensus 217 r~l~~~ 222 (697)
+++..+
T Consensus 419 kai~~~ 424 (799)
T KOG4162|consen 419 KAISLL 424 (799)
T ss_pred HHHHHh
Confidence 888755
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.96 E-value=0.00025 Score=65.29 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
.++++.|...|+.++...|... .|......+.. .+..+.|...|++|+..+|.++..|...
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~------------------~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM------------------LKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4779999999999999888753 44433333222 4668899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (697)
+..+...|++++|...+++++ ...|++...|..+...
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al-~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAI-KMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHH
Confidence 999999999999999999999 7899998888655433
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.008 Score=62.42 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=185.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
.++-.-...||+++.|-...++.+-..| +..+...|++++..+|.....=-.|+... ...|+.+..-++..+-+....
T Consensus 219 ~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 219 FLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-GQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred HHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH-HhccCHhhHHHHHHHHHhhhh
Confidence 4566667889999999999888877777 56788899999999998877777777777 477888888888888877764
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434 224 TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL 303 (697)
Q Consensus 224 ~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (697)
.+..=|.--+... +..+. .++ .|..+.+.+..++. +..-+ +.....+
T Consensus 298 ~ta~~wfV~~~~l--~~~K~-~~r-AL~~~eK~I~~~~r--~~~al---------------------------ilKG~lL 344 (564)
T KOG1174|consen 298 YTASHWFVHAQLL--YDEKK-FER-ALNFVEKCIDSEPR--NHEAL---------------------------ILKGRLL 344 (564)
T ss_pred cchhhhhhhhhhh--hhhhh-HHH-HHHHHHHHhccCcc--cchHH---------------------------HhccHHH
Confidence 4444444333221 11111 111 12222111111110 00000 0000011
Q ss_pred hhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH-HhhcccCCCCC
Q 005434 304 FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKD 382 (697)
Q Consensus 304 ~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a-~~~l~~~~~~~ 382 (697)
+.....+.|..-|+.|..--|...+.+.-++..|-.++ .-..+-.+-+...+.+|.+...-..++ .....+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d----- 416 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD----- 416 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC-----
Confidence 11122456778899888877888888888888887765 234555566677788888866644442 222221
Q ss_pred CCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc
Q 005434 383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (697)
Q Consensus 383 ~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~ 461 (697)
+..-++|...|++||+.-|.-- -...-+.++. ..+....+..++++++.. ..+
T Consensus 417 -------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~------------------~Eg~~~D~i~LLe~~L~~-~~D 470 (564)
T KOG1174|consen 417 -------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ------------------VEGPTKDIIKLLEKHLII-FPD 470 (564)
T ss_pred -------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHH------------------hhCccchHHHHHHHHHhh-ccc
Confidence 3456899999999999887511 1111222221 123345577888888865 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (697)
..+....++++.-.+.+++|.+-|..|+ +..|++..--.-.=.+|.
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHh
Confidence 6788888999999999999999999999 899998766544333443
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.94 E-value=0.0018 Score=72.00 Aligned_cols=226 Identities=15% Similarity=0.063 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..++|...++.....-+....+...-++++.+.|+.++|..++...+ ..+|++......+......... .+.+
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rNPdn~~Yy~~L~~~~g~~~~-----~~~~ 91 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRNPDNYDYYRGLEEALGLQLQ-----LSDE 91 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHhhhcc-----cccc
Confidence 557788888877665555556666777999999999999999999999 7999998877776655422211 0111
Q ss_pred chHHHHHHHHHHHhhcChhh--------------hHHHHHHHHHHHHhhh------------------HHHHHHHHHHHH
Q 005434 522 DILSIFELLKCILTKVSALE--------------SESLWLMALKFFMNQK------------------HYFDKLVEIALI 569 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~--------------~~~lW~~y~~~~~~~~------------------~~~~~l~~~a~~ 569 (697)
+.+...++|.+--...|... +...-..|+.-....+ ..+..++.....
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 35666666666544444322 1112222322222221 012223332222
Q ss_pred hhhhCCCC---------CCCCChHHHH--HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHH
Q 005434 570 SVAKDGGG---------ESGFSLPSAI--INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638 (697)
Q Consensus 570 ~~~~~~~~---------~~~~~l~~~y--l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~ 638 (697)
........ ++...+|..| +......|++++|.+..++||...|..++++..=+.+-...| ++.
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G------~~~ 245 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG------DLK 245 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC------CHH
Confidence 22111100 1111234333 233345678888888888888888888888877777777777 778
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 005434 639 NARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYW 679 (697)
Q Consensus 639 raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ 679 (697)
.|-...+.|-...+.+--+=...+..-.+.|..+.|..+..
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888887766666666666777777888887777654
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.91 E-value=0.021 Score=58.00 Aligned_cols=311 Identities=14% Similarity=0.049 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
..-+..-|..|+.-.|+++.....-+......| ..-+..-+.|.|.+.|+-...-+.-+...+ .+|.++.|-.=|+..
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL-KQGELEQAEADFDQV 132 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHH
Confidence 344667888999999999888777776666656 345677899999999998888888888887 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
|...|.....-..+-++++...... .|..+. .|.
T Consensus 133 l~~~~s~~~~~eaqskl~~~~e~~~-l~~ql~-----------------s~~---------------------------- 166 (504)
T KOG0624|consen 133 LQHEPSNGLVLEAQSKLALIQEHWV-LVQQLK-----------------SAS---------------------------- 166 (504)
T ss_pred HhcCCCcchhHHHHHHHHhHHHHHH-HHHHHH-----------------HHh----------------------------
Confidence 9999976655555655554321111 000000 000
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
..++...|.......++..|-+..++..-.+.|..-+ ....+.+=+..+.+.-.++.+..+..++++..
T Consensus 167 ------~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-- 235 (504)
T KOG0624|consen 167 ------GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-- 235 (504)
T ss_pred ------cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHh--
Confidence 0112345566666777777777666655545444322 23344444555555566777778888887765
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHH--HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL--MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al 455 (697)
.+..+.+....+++|+-.|..+ -|..|-++- .+.+.. .+. ...++....+.+.++..+
T Consensus 236 -----------vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les-~e~-------~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 236 -----------VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES-AEQ-------AIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -----------hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH-HHH-------HHhhhhHHHHHHHHHHHH
Confidence 4778888889999999988876 344443321 111100 000 012355677888999988
Q ss_pred HcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434 456 AMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (697)
Q Consensus 456 ~~~~~~~~l----w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~ 531 (697)
..+|..+.+ ..-........+++-+|.+.+.+++ ...|+++.+...+++-.+-.. ..+.+..-|+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE----------~YD~AI~dye 365 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDE----------MYDDAIHDYE 365 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhH----------HHHHHHHHHH
Confidence 888874332 2222334445688999999999999 788999999998887665322 4677777788
Q ss_pred HHHhhcC
Q 005434 532 CILTKVS 538 (697)
Q Consensus 532 ~al~~~p 538 (697)
+|+..-+
T Consensus 366 ~A~e~n~ 372 (504)
T KOG0624|consen 366 KALELNE 372 (504)
T ss_pred HHHhcCc
Confidence 8876443
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.034 Score=57.92 Aligned_cols=287 Identities=11% Similarity=0.007 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHh
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMI 424 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~-~lw~~yi~~~~~~~ 424 (697)
...+-.++-...+.+|++..+...+|+.+.. .|....|...|+++....|.. +--+.|.-++....
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~-------------~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYY-------------NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhh-------------hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 3444445556677899999988888988865 366778889999987766643 23355554433211
Q ss_pred cCCcccccC-----C------------CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 425 APKKEETRD-----S------------ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (697)
Q Consensus 425 ~~~~~~~~~-----~------------~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~ 487 (697)
.-. .+..+ + .-.....+..++|...-+++|..+|.+...++.-..++...|++++|.-.++.
T Consensus 281 ~~e-~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 281 GCE-QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred CHh-hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 000 00000 0 00001234455666666666666666666666666666666666666555555
Q ss_pred HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh-HHHHHHHH
Q 005434 488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK-HYFDKLVE 565 (697)
Q Consensus 488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~~lW~~y~~~~~~~~-~~~~~l~~ 565 (697)
|. .--|...+.+.-.+.-.+..+. +.++.-+-..+++..|.+. +..|.-.-+-++...+ +++.++++
T Consensus 360 Aq-~Lap~rL~~Y~GL~hsYLA~~~----------~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 360 AQ-MLAPYRLEIYRGLFHSYLAQKR----------FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HH-hcchhhHHHHHHHHHHHHhhch----------HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 55 4445555555555544444332 3333333334444443321 2222110111111111 45566666
Q ss_pred HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434 566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE 645 (697)
Q Consensus 566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye 645 (697)
+++..-+. -..-....++.....|..+.+-++.++.+...| ++.+.....++-..+. ++..+-+.|.
T Consensus 429 k~L~~~P~------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~N------e~Q~am~~y~ 495 (564)
T KOG1174|consen 429 KSLKINPI------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQN------EPQKAMEYYY 495 (564)
T ss_pred hhhccCCc------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhh------hHHHHHHHHH
Confidence 65532110 000011223334445666666666666666543 3445555555555444 5566666666
Q ss_pred HHHhhCCCCchHHHHHHHHHHhcCC
Q 005434 646 SALATYDQNTSLWRDYYSTETKLGT 670 (697)
Q Consensus 646 ~al~~~~~~~~lW~~y~~fE~~~G~ 670 (697)
.|+..+|.+...-.-.-.+|....+
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred HHHhcCccchHHHHHHHHHHhccCC
Confidence 6666666555444444445544433
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.90 E-value=0.00024 Score=65.45 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.+...|...+..+...| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~A 118 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 456778999999999999999999999998887 678999999999999999999999999875 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRM 235 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~ 235 (697)
++..|++...|......
T Consensus 119 l~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 119 IKMSYADASWSEIRQNA 135 (144)
T ss_pred HHhCCCChHHHHHHHHH
Confidence 99999988888555443
No 91
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.88 E-value=1.8e-05 Score=78.41 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=73.2
Q ss_pred CCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWR 659 (697)
Q Consensus 580 ~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~ 659 (697)
.+.+|..|+.++...+.+...-.||..++...|.+.++|..++++|..... +++.+|++|.+++..++.+|.+|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----ni~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----NIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----cHHHHHHHHHhhhccCCCCchHHH
Confidence 456677777777777778888899999999999999999999999876542 899999999999999999999999
Q ss_pred HHHHHHHhc
Q 005434 660 DYYSTETKL 668 (697)
Q Consensus 660 ~y~~fE~~~ 668 (697)
.|..||..+
T Consensus 181 eyfr~El~y 189 (435)
T COG5191 181 EYFRMELMY 189 (435)
T ss_pred HHHHHHHHH
Confidence 999999875
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.85 E-value=0.079 Score=58.37 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
+.+...-.++++-.+.+.--|.-|.-+-+..+ +..+.+.|.+||...|++.++|-..+..-. +.++++.....=.+-|
T Consensus 58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LL 136 (700)
T KOG1156|consen 58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLL 136 (700)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence 45556677888888999999998888766655 778999999999999999999999988885 7899999998889999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHH
Q 005434 220 RVCPTSEELWVEYLRMELTYLN 241 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~ 241 (697)
+..|....-|..|+.--...++
T Consensus 137 ql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 137 QLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HhhhhhHHHHHHHHHHHHHHHH
Confidence 9999888999998865443333
No 93
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.84 E-value=0.00017 Score=63.70 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=79.5
Q ss_pred HhhHHHHHHHhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 005434 76 KQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM 152 (697)
Q Consensus 76 ~kR~~fE~~l~r---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~ 152 (697)
..|+.||..|.+ ....+..|++||.|=.+.. . +. +....+..+++||++
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~------------------------p-~g---~~~s~L~~lLerc~~ 54 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENY------------------------P-QG---GKESGLLTLLERCIR 54 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------C-CC---CchhhHHHHHHHHHH
Confidence 468999999953 3345799999999943210 1 00 123567789999998
Q ss_pred hcCC---------CHHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 153 RFKG---------DIELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 153 ~~p~---------~~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
.|-+ -+++|+.|+++|. ..+.+|.-+... -...+.+|+.+|.+. +..|++..|..+|++|
T Consensus 55 ~f~~~~~YknD~RyLkiWi~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~~G 125 (125)
T smart00777 55 YFEDDERYKNDPRYLKIWLKYADNCD-----EPRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQLG 125 (125)
T ss_pred HhhhhhhhcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHcc
Confidence 8633 3589999999873 346677766553 234678999999998 6999999999999876
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.83 E-value=0.0063 Score=71.08 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=83.1
Q ss_pred CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHH
Q 005434 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA 403 (697)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~a 403 (697)
|+.++.|..++..+...+ ..+.+..+++..++.+|+....|+..+-++... +..+.+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~---~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-------------~~~~~~~lv--~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSEN---LTDEAKDICEEHLKEHKKSISALYISGILSLSR-------------RPLNDSNLL--NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-------------cchhhhhhh--hh
Confidence 667788888888775443 357888889999999999999999988877652 334444444 55
Q ss_pred hhcCCchhHH---HHHHHHHHHHhcCCcccccCCC--CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH
Q 005434 404 LKNVPSSMIF---DLYTKFLMDMIAPKKEETRDSE--LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL 478 (697)
Q Consensus 404 l~~~~~~~lw---~~yi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~ 478 (697)
++..+...=| ..|.......+.. ...+.. .+-...+..+++..+|++++..+|.++.+--.|+.++... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~---k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGEN---KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhh---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 5555443212 1111111110000 000000 0000113455666777777777777766666666666666 67
Q ss_pred HHHHHHHHHHh
Q 005434 479 DEARKLAAKLC 489 (697)
Q Consensus 479 ~~A~~l~~~al 489 (697)
++|.+++.+|+
T Consensus 166 ~KA~~m~~KAV 176 (906)
T PRK14720 166 EKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHH
Confidence 77777666666
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.82 E-value=0.07 Score=56.97 Aligned_cols=114 Identities=12% Similarity=-0.005 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCC
Q 005434 349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPK 427 (697)
Q Consensus 349 ~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~ 427 (697)
+..++......+|........++..... .|+++.|...++++++..|... .+.........
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----- 160 (355)
T cd05804 99 VARVLPLWAPENPDYWYLLGMLAFGLEE-------------AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM----- 160 (355)
T ss_pred HHHHHhccCcCCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----
Confidence 3333333333445544444555555543 4778999999999999888764 33333322221
Q ss_pred cccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434 428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (697)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P 494 (697)
.+..+.+...|++++...|.++ ..|...+.++...|++++|..++++++ ...|
T Consensus 161 -------------~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~ 217 (355)
T cd05804 161 -------------QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI-APSA 217 (355)
T ss_pred -------------cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cccc
Confidence 3557889999999998765432 357788999999999999999999987 4444
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.80 E-value=0.00031 Score=63.69 Aligned_cols=90 Identities=10% Similarity=0.005 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
..|++++...|++...-..++......+ ...+...|++++..+|.++.+|...+.... ..|+.+.|..++++++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999887777777777666 568899999999999999999999999886 78999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 005434 224 TSEELWVEYLRM 235 (697)
Q Consensus 224 ~~~~lW~~y~~~ 235 (697)
++...|.....+
T Consensus 83 ~~~~~~~~la~~ 94 (135)
T TIGR02552 83 DDPRPYFHAAEC 94 (135)
T ss_pred CChHHHHHHHHH
Confidence 988887665543
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0047 Score=60.29 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHH
Q 005434 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM 423 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~ 423 (697)
...+++..++.+...||.++.+-...|.+..- .+..+.|.++|+.-|...|++. ++..=+.....+
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-------------~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-------------TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-------------hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 45789999999999999999887777776532 4788999999999999999875 433333333322
Q ss_pred hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (697)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (697)
. +.+ .|..-...-++.-+.+.+.|...++++...|++++|---++..+ =..|.++....++
T Consensus 134 G-----------------K~l-~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-l~~P~n~l~f~rl 194 (289)
T KOG3060|consen 134 G-----------------KNL-EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-LIQPFNPLYFQRL 194 (289)
T ss_pred C-----------------CcH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HcCCCcHHHHHHH
Confidence 1 112 34444444566668899999999999999999999998899888 6789999999999
Q ss_pred HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 504 i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
.++.-..|. -++++..++.|.+|++..|
T Consensus 195 ae~~Yt~gg-------~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 195 AEVLYTQGG-------AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhh-------HHHHHHHHHHHHHHHHhCh
Confidence 887765543 1257889999999998776
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.77 E-value=0.00051 Score=66.89 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhc
Q 005434 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA 425 (697)
Q Consensus 347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~ 425 (697)
+.....++..++..|+++..|..+++.+.. .++++.|...|++++...|... ++..|........
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-------------~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~- 121 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW-------------RNDYDNALLAYRQALQLRGENAELYAALATVLYYQA- 121 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Confidence 344455778888999999999999999975 4889999999999999998765 6766665321110
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
+ ....+.++.++++++..+|.+...+...+..+...|++++|...+++++ ...|.
T Consensus 122 ---g-----------~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL-~l~~~ 176 (198)
T PRK10370 122 ---G-----------QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL-DLNSP 176 (198)
T ss_pred ---C-----------CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence 0 0114789999999999999999999999999999999999999999999 55554
No 99
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0012 Score=66.21 Aligned_cols=220 Identities=12% Similarity=0.043 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+...+|-..++.+++..| .++.+....+.+.+.++++.|..++..++ ..+|.++.+-..-..+.+..++
T Consensus 237 gm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl-d~fP~~VT~l~g~ARi~eam~~--------- 305 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL-DSFPFDVTYLLGQARIHEAMEQ--------- 305 (478)
T ss_pred cChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh-hcCCchhhhhhhhHHHHHHHHh---------
Confidence 445677888888888744 57778888899999999999999999999 7999998887766666555543
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKF-FMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA 600 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~A 600 (697)
.+.+.++|..+++.-|... ..|=.....| +..+.+.+-..|.+.++.-. ..+.++...----.-.+.++-+
T Consensus 306 -~~~a~~lYk~vlk~~~~nv-EaiAcia~~yfY~~~PE~AlryYRRiLqmG~------~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 306 -QEDALQLYKLVLKLHPINV-EAIACIAVGYFYDNNPEMALRYYRRILQMGA------QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred -HHHHHHHHHHHHhcCCccc-eeeeeeeeccccCCChHHHHHHHHHHHHhcC------CChHHHhhHHHHHHhhcchhhh
Confidence 5778888999988654321 0000001122 23334555555666554311 1344544322112235678899
Q ss_pred HHHHHHHHhCCC---CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHH
Q 005434 601 REMYKRFLALPR---PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAV 677 (697)
Q Consensus 601 R~iy~~~i~~~p---~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~v 677 (697)
..-|++++.... ...++|-..-.+-...| +++-|..+|..|+..++.+.+-.....-++.+.|+++.|+.+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iG------D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIG------DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEecc------chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 999999998533 22346655444444455 899999999999999888889999999999999999999999
Q ss_pred HHHHHhhcC
Q 005434 678 YWRARKTLK 686 (697)
Q Consensus 678 y~ral~~~~ 686 (697)
+.-|....|
T Consensus 452 l~~A~s~~P 460 (478)
T KOG1129|consen 452 LNAAKSVMP 460 (478)
T ss_pred HHHhhhhCc
Confidence 999977665
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.0012 Score=59.85 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++..+|++...|...+......+ +..+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-ALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 455678899999999999999999999887766 678899999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHH
Q 005434 219 LRVCPTSEELWVEY 232 (697)
Q Consensus 219 l~~~p~~~~lW~~y 232 (697)
++..|++...+...
T Consensus 112 l~~~p~~~~~~~~~ 125 (135)
T TIGR02552 112 IEICGENPEYSELK 125 (135)
T ss_pred HHhccccchHHHHH
Confidence 99999876655433
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.67 E-value=0.013 Score=64.54 Aligned_cols=231 Identities=17% Similarity=0.197 Sum_probs=129.5
Q ss_pred chHHHHHHHHHHHHhhcC--------Cchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---
Q 005434 390 PSQMQKAIQVYEEALKNV--------PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM--- 457 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~--------~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~--- 457 (697)
.+++++|...++.|+..+ |... +-..+..+... .+....|..+|++|+..
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~------------------~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS------------------LGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHHHHH
Confidence 588999999999999873 2111 22223333222 34567888888888874
Q ss_pred --CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434 458 --GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (697)
Q Consensus 458 --~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 532 (697)
++.+ .....+.+.++...|.+++|...+++|+ +|... ..+. ...++-..+-.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al--------~I~~~------~~~~---------~~~~v~~~l~~ 330 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL--------EIYEK------LLGA---------SHPEVAAQLSE 330 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH--------HHHHH------hhcc---------ChHHHHHHHHH
Confidence 3333 4567777788889999999999999988 22222 0111 01111000000
Q ss_pred HHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHH
Q 005434 533 ILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFL 608 (697)
Q Consensus 533 al~~~p~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i 608 (697)
. .+.+..... +.+..++++++.......+ +..+.+...| ...+...|.+++|+++|++||
T Consensus 331 ~---------------~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 331 L---------------AAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred H---------------HHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 0 000000000 2333344444443321111 1122344444 444667899999999999999
Q ss_pred hCC----C-----CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---C-CCc---hHHHHHHHHHHhcCChh
Q 005434 609 ALP----R-----PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D-QNT---SLWRDYYSTETKLGTSE 672 (697)
Q Consensus 609 ~~~----p-----~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~---~-~~~---~lW~~y~~fE~~~G~~~ 672 (697)
... . ....+|..-.+. ...+ .+..|-.+|+.+.... | .++ .....-+..=...|+.+
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~-~~~k------~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAY-EELK------KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHH-HHhc------ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 753 1 123445444444 2333 4566666776665432 3 344 45555555667789999
Q ss_pred hHHHHHHHHHhh
Q 005434 673 TATAVYWRARKT 684 (697)
Q Consensus 673 ~a~~vy~ral~~ 684 (697)
.|.++.+++++.
T Consensus 468 ~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 468 AAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 102
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.60 E-value=8.7e-05 Score=47.63 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh
Q 005434 636 SLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (697)
Q Consensus 636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (697)
+++|||.|||+.+... .++..|+.|+.||.+
T Consensus 2 E~dRAR~IyeR~v~~h-p~~k~WikyAkFEe~ 32 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH-PEVKNWIKYAKFEER 32 (32)
T ss_pred hHHHHHHHHHHHHHhC-CCchHHHHHHHhhcC
Confidence 6789999999999865 468899999999863
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.58 E-value=0.0066 Score=60.81 Aligned_cols=170 Identities=12% Similarity=0.113 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------c
Q 005434 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG---VWIYAAAWEFDH-------N 205 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~---lW~~~a~~e~~~-------~ 205 (697)
...+...|++++..+|++. ..|...+......+ ...+...|++++..+|+++. .|...+...... .
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~ 128 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQ 128 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCH
Confidence 4567789999999999876 45666666656656 57899999999999998775 455544444321 2
Q ss_pred CCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCC
Q 005434 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVE 285 (697)
Q Consensus 206 ~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 285 (697)
|+.+.|...|+++++.+|++...|..+..+......... ....+
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~-~~~~~----------------------------------- 172 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAG-KELYV----------------------------------- 172 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHH-HHHHH-----------------------------------
Confidence 678899999999999999988777666554322111000 00000
Q ss_pred CCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCC
Q 005434 286 NTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLV 362 (697)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~ 362 (697)
..-.+..++...|...|+.+++..|++. +.+..+...+...+ ..+.+..+++.+...||+
T Consensus 173 --------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg---~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 173 --------------ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG---LKDLAQDAAAVLGANYPD 235 (235)
T ss_pred --------------HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC
Confidence 0001122346788899999999887643 44555555554433 346677788888888874
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.56 E-value=0.007 Score=60.62 Aligned_cols=181 Identities=14% Similarity=0.036 Sum_probs=114.0
Q ss_pred hhhhhhhhhHHHHHHHHHHhcCCCchH---HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChh---hHHHHHHhhc
Q 005434 302 DLFREQGLRVLQTIYSGAVEALPSSFN---LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKM 375 (697)
Q Consensus 302 ~~~~~~~~~~a~~iy~~al~~~p~~~~---~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~---~w~~~a~~~l 375 (697)
..+..++++.|...|+.+++..|++.. .+...-..+.. . ...+.+...++++++.+|+++. .|..++..+.
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~--~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK--S-GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh--c-CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 344455678999999999998887653 22333222222 2 3468899999999999998876 4666666554
Q ss_pred ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH--HHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (697)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye 452 (697)
..... .....+..+.|...|++++...|... .+..+..... ......... +- -.....+....+...|+
T Consensus 119 ~~~~~-----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~--~a-~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 119 NQIDR-----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY--VA-RFYLKRGAYVAAINRFE 190 (235)
T ss_pred Hhccc-----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHcCChHHHHHHHH
Confidence 31000 00113678999999999999988764 3332221110 000000000 00 00012355778889999
Q ss_pred HHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434 453 KAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (697)
Q Consensus 453 ~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P 494 (697)
+++...|.+ ++.|...+..+...|++++|..+++... ..+|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~-~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG-ANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC
Confidence 999886653 5788889999999999999998887776 5555
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.55 E-value=0.047 Score=60.87 Aligned_cols=260 Identities=13% Similarity=0.066 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
|.+++|.+.++..-+.+.+.. +...-+.+... .+..+.|..+|...+..||.+..-+..+.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k------------------Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~ 79 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLK------------------LGRKEEAEKIYRELIDRNPDNYDYYRGLE 79 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 667778887777666665543 22222222222 24467788888888888888877776666
Q ss_pred HHHHhc-----CCHHHHHHHHHHHhhccCCCc------------HHHHHHHHHHHHHhcccCCCCCC-----------cc
Q 005434 470 TLYLQL-----GKLDEARKLAAKLCSGKLSDS------------VQLWLLRISVEIRCVTRNSFSPS-----------KA 521 (697)
Q Consensus 470 ~l~~~~-----~~~~~A~~l~~~al~~~~P~~------------~~lW~~~i~l~~~~~~~~~~~~~-----------~~ 521 (697)
....-. ++.+....+|+..- ..+|.+ .+-+...++-.+... +.-++|+ ..
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~-~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~-l~KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELA-EKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ-LRKGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHH-HhCccccchhHhhcccCCHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHcChh
Confidence 655221 24555666777655 566653 122222222222110 0112221 00
Q ss_pred chHHHHHHHHHHHhhc------Chhh-------hHHHHHHH--HHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH
Q 005434 522 DILSIFELLKCILTKV------SALE-------SESLWLMA--LKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP 584 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~------p~~~-------~~~lW~~y--~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~ 584 (697)
...-+.++++.-+... +..+ +..+|..| ++.+...+ +.+-...++|+.. .+++.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---------tPt~~ 228 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---------TPTLV 228 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCcH
Confidence 1122223333332221 1112 23488766 44444444 4566667777642 56777
Q ss_pred HHHHHH---HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHH-H
Q 005434 585 SAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLW-R 659 (697)
Q Consensus 585 ~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW-~ 659 (697)
..|+.. +...|++.+|-..++.|..+.+.+..+-.+++..-...+ .++.|.++.-.-..... ...++. +
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~------~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG------RIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC------CHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 777655 567899999999999999998888888888888888887 88999988776665442 122444 4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 660 DYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 660 ~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
..+-||.+.|..=.-..-|-+|++.+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56667877777666666677887765
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.55 E-value=0.0044 Score=71.47 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=113.2
Q ss_pred CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (697)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~ 402 (697)
.|.+.+....+.++..+.+ ..+.+..+++.+.+..|++...+..+|..... .+.+++|+..+++
T Consensus 82 ~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------------~~~~eeA~~~~~~ 145 (694)
T PRK15179 82 YPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------------QQGIEAGRAEIEL 145 (694)
T ss_pred ccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------------hccHHHHHHHHHH
Confidence 3555566666666665554 35789999999999999999999999888754 5789999999999
Q ss_pred HhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH
Q 005434 403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA 481 (697)
Q Consensus 403 al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A 481 (697)
++...|+.. ........+.. .+..+.|..+|++++..+|..++.|..|+..++..|+.++|
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~------------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDE------------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999864 22223333332 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcHHHHHHH
Q 005434 482 RKLAAKLCSGKLSDSVQLWLLR 503 (697)
Q Consensus 482 ~~l~~~al~~~~P~~~~lW~~~ 503 (697)
...|++|+...-|.+ +-+..+
T Consensus 208 ~~~~~~a~~~~~~~~-~~~~~~ 228 (694)
T PRK15179 208 RDVLQAGLDAIGDGA-RKLTRR 228 (694)
T ss_pred HHHHHHHHHhhCcch-HHHHHH
Confidence 999999994444443 433333
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0087 Score=60.32 Aligned_cols=222 Identities=11% Similarity=0.085 Sum_probs=155.8
Q ss_pred Hhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005434 170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248 (697)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~ 248 (697)
..| ..++.+-|+.+|...|. |+-.+..++... .......|-.+|..||...|.+...-..-+++....+
T Consensus 235 rLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~-------- 304 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME-------- 304 (478)
T ss_pred HhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH--------
Confidence 446 46789999999999886 666777777664 6778899999999999999986554444443322111
Q ss_pred HhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH
Q 005434 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN 328 (697)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~ 328 (697)
..+.|..+|+.+++..|.+++
T Consensus 305 -----------------------------------------------------------~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 305 -----------------------------------------------------------QQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred -----------------------------------------------------------hHHHHHHHHHHHHhcCCccce
Confidence 234567778888877776654
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (697)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~ 408 (697)
...-. -..+-..+.++++-..+..+++.--.+|++++.++--.+- -+.++.+...|++|+....
T Consensus 326 aiAci---a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-------------aqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 AIACI---AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-------------AQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeee---eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-------------hcchhhhHHHHHHHHhhcc
Confidence 21100 0001112467888888888888888888888766655442 2568888899999988754
Q ss_pred chh----HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 409 SSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484 (697)
Q Consensus 409 ~~~----lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l 484 (697)
.+. +|-.. ..++.. -++...|..-|.-|+..++.+.+.....+-+..+.|+++.|+.+
T Consensus 390 ~~~~aaDvWYNl-----g~vaV~-------------iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 390 QPGQAADVWYNL-----GFVAVT-------------IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred Ccchhhhhhhcc-----ceeEEe-------------ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 321 55421 111111 24567788889999999999999999999999999999999999
Q ss_pred HHHHhhccCCC
Q 005434 485 AAKLCSGKLSD 495 (697)
Q Consensus 485 ~~~al~~~~P~ 495 (697)
+..|. ...|+
T Consensus 452 l~~A~-s~~P~ 461 (478)
T KOG1129|consen 452 LNAAK-SVMPD 461 (478)
T ss_pred HHHhh-hhCcc
Confidence 99888 56776
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.53 E-value=0.013 Score=62.65 Aligned_cols=202 Identities=15% Similarity=-0.009 Sum_probs=117.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+|.++..+...+.++...|+.+.+...+.++. ...|.+ .+............+ +.+++.+.+++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~a~~~~~~g----------~~~~A~~~~~~~l 70 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAA-QALAARATERERAHVEALSAWIAG----------DLPKALALLEQLL 70 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence 46666666677777777777777766666666 444433 333333232222222 4677778888888
Q ss_pred hhcChhhhHHHHHH-HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhC
Q 005434 535 TKVSALESESLWLM-ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLAL 610 (697)
Q Consensus 535 ~~~p~~~~~~lW~~-y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~ 610 (697)
...|... ..|.. +..+.............+++....+. .+..... ........|.+++|...+++++..
T Consensus 71 ~~~P~~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 71 DDYPRDL--LALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-----NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred HHCCCcH--HHHHHhHHHHHhcccccCchhHHHHHhccCcC-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7766432 22321 11111111100011111222111111 1221111 222345678888888888888888
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005434 611 PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKLGTSETATAVYWRARK 683 (697)
Q Consensus 611 ~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~----~lW~~y~~fE~~~G~~~~a~~vy~ral~ 683 (697)
.|.+...+...+.+....+ ..+.+..+|++++...+.++ ..|...+.+....|+.+.|..+|++++.
T Consensus 144 ~p~~~~~~~~la~i~~~~g------~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 144 NPDDAWAVHAVAHVLEMQG------RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCCcHHHHHHHHHHHHcC------CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8887766666666666666 78888888888888765332 3566778888888888888888888753
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00042 Score=54.49 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~ 234 (697)
+..+...|++++..+|+++.+|+.++...+ ..|+++.|+.++++.+...|+++.+|....+
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567899999999999999999999999997 7899999999999999999987777776654
No 110
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00045 Score=54.29 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
.+..+.|...|++++..+|.+.+++..++.++...|++++|..++++++ ...|++..+|....+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL-KQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999 789998877766543
No 111
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.47 E-value=0.0017 Score=58.08 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCC---CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-------hHHHHHHH
Q 005434 480 EARKLAAKLCSGKLS---DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-------SESLWLMA 549 (697)
Q Consensus 480 ~A~~l~~~al~~~~P---~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-------~~~lW~~y 549 (697)
+.++.++..+ .... +..++|..||......... .+....+..++++|+..+.... ..++|+.|
T Consensus 3 ~~r~~~e~~i-~~~~~~dDPL~~w~~yI~w~~~~~p~------~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y 75 (126)
T PF08311_consen 3 QQRQEFEEQI-RSYEEGDDPLDPWLRYIKWIEENYPS------GGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY 75 (126)
T ss_dssp HHHHHHHHHH-HCCGGSS-CHHHHHHHHHHHHHHCTT------CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHCCC------CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence 3455666666 3333 5689999999877765321 1124667788999998764422 57899999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005434 550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL 608 (697)
Q Consensus 550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i 608 (697)
+++.. ....+|+.+... .++ .....++..|+.++...|++++|.+||+.+|
T Consensus 76 a~~~~----~~~~if~~l~~~---~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 76 ADLSS----DPREIFKFLYSK---GIG-TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTTBS----HHHHHHHHHHHH---TTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcc----CHHHHHHHHHHc---Ccc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 87544 455566655432 221 1133334444555667899999999999886
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.11 Score=54.48 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
.|.+++|...|++||....+- .++.-=+..+ ..+.++.+...|=+.+..-..+.++..+
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e-------------------~~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-------------------ALGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-------------------HhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578999999999999765431 1433222211 2356778877777765544557888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~ 547 (697)
.+.++....+..+|.+++.++. ...|+++.+.....++.-+.|. ...+++.+-....-+|..--.--|+
T Consensus 564 ianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegd----------ksqafq~~ydsyryfp~nie~iewl 632 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGD----------KSQAFQCHYDSYRYFPCNIETIEWL 632 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccc----------hhhhhhhhhhcccccCcchHHHHHH
Confidence 9999999999999999999998 7899999999998888876663 3556555555555555432223354
Q ss_pred HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH-HHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 005434 548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI-INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL 624 (697)
Q Consensus 548 ~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y-l~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~l 624 (697)
. .|+...+ +.+..-|++|.-.. | ...-|... +.-..+.|++.+|..+|...-..+|.+..-....+.+
T Consensus 633 ~--ayyidtqf~ekai~y~ekaaliq-p------~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 633 A--AYYIDTQFSEKAINYFEKAALIQ-P------NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred H--HHHHhhHHHHHHHHHHHHHHhcC-c------cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 2 2232222 45555566654321 1 22334443 3346789999999999999999999887655555544
Q ss_pred HhccC
Q 005434 625 ENNLA 629 (697)
Q Consensus 625 E~~~~ 629 (697)
-..+|
T Consensus 704 ~~dlg 708 (840)
T KOG2003|consen 704 AGDLG 708 (840)
T ss_pred hcccc
Confidence 44443
No 113
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.44 E-value=0.00022 Score=46.91 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 206 ~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~ 237 (697)
|+++.||.+|+++++.+|.+..+|..|++||.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46788899999999999888899999988874
No 114
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.44 E-value=0.0002 Score=47.08 Aligned_cols=31 Identities=32% Similarity=0.650 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 005434 636 SLVNARKLFESALATYDQNTSLWRDYYSTET 666 (697)
Q Consensus 636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~ 666 (697)
+++++|.+|++++..+|.++++|..|++||.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5788899999999888888899999999885
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.002 Score=68.84 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++|+...|++..+|...+..+...| +..+...+++++.+.|.++..|...+...+ ..|+++.|...|+++
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~a 96 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999998886 799999999999999
Q ss_pred hhhCCCCHHHHHHH
Q 005434 219 LRVCPTSEELWVEY 232 (697)
Q Consensus 219 l~~~p~~~~lW~~y 232 (697)
++..|++..+....
T Consensus 97 l~l~P~~~~~~~~l 110 (356)
T PLN03088 97 ASLAPGDSRFTKLI 110 (356)
T ss_pred HHhCCCCHHHHHHH
Confidence 99999987544443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.37 E-value=0.072 Score=59.48 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (697)
Q Consensus 310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~ 389 (697)
+.|..||++ ++.|...+..|...+. ...++.|+.+.++ .|.++.+|..++..-..
T Consensus 415 ksAl~I~Er--------lemw~~vi~CY~~lg~---~~kaeei~~q~le-k~~d~~lyc~LGDv~~d------------- 469 (777)
T KOG1128|consen 415 KSALVIFER--------LEMWDPVILCYLLLGQ---HGKAEEINRQELE-KDPDPRLYCLLGDVLHD------------- 469 (777)
T ss_pred HHHHHHHHh--------HHHHHHHHHHHHHhcc---cchHHHHHHHHhc-CCCcchhHHHhhhhccC-------------
Confidence 456666664 4677777777766552 3567777777777 55567777776665432
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
+.-+++|-++.+.-- .+ ++....... ..+++.+.+..-++++++.+|.....|..+.
T Consensus 470 ~s~yEkawElsn~~s-----ar-----A~r~~~~~~-------------~~~~~fs~~~~hle~sl~~nplq~~~wf~~G 526 (777)
T KOG1128|consen 470 PSLYEKAWELSNYIS-----AR-----AQRSLALLI-------------LSNKDFSEADKHLERSLEINPLQLGTWFGLG 526 (777)
T ss_pred hHHHHHHHHHhhhhh-----HH-----HHHhhcccc-------------ccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence 233344433332211 00 000000000 0125577888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA 549 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y 549 (697)
-.-++.++.+.|.+.|-+++ .--|++..-|.......+..+. ..+++..+.+|++.. . +
T Consensus 527 ~~ALqlek~q~av~aF~rcv-tL~Pd~~eaWnNls~ayi~~~~----------k~ra~~~l~EAlKcn-~-~-------- 585 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCV-TLEPDNAEAWNNLSTAYIRLKK----------KKRAFRKLKEALKCN-Y-Q-------- 585 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHh-hcCCCchhhhhhhhHHHHHHhh----------hHHHHHHHHHHhhcC-C-C--------
Confidence 88888888888888888888 6778888888765555555442 345555566665432 1 1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCC----CCHHHHHHHHHHH
Q 005434 550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR----PGLVLYQNCIELE 625 (697)
Q Consensus 550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p----~~~~~~~~~i~lE 625 (697)
...+|..|..-....|.++.|.+.|.+.+.++- +++..-+.+..++
T Consensus 586 ------------------------------~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 586 ------------------------------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred ------------------------------CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 334444444444455666777777776665432 1222333344444
Q ss_pred hcc-CCCCCcccHHHHHH-HHHHHHhhCCCCchHHHHHHH
Q 005434 626 NNL-ASVGDKDSLVNARK-LFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 626 ~~~-~~~~~~~~~~raR~-lye~al~~~~~~~~lW~~y~~ 663 (697)
... ++.+....+..-|+ ++-+.+.+...++..|.-|+.
T Consensus 636 ~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 636 GMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL 675 (777)
T ss_pred hccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh
Confidence 333 11111123334444 566666666678888988887
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.011 Score=64.03 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=134.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~ 376 (697)
++....++.++++..|...|+.|++.-|.+++.|..+= ....+. ..+..+...+.++++.-|++-+.-..+|--+..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG--~~qaEN-E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLG--ITQAEN-ENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhh--hHhhhc-cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 56777788888888999999999999999999886652 223332 245677888999999999998887777766653
Q ss_pred cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (697)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~ 456 (697)
.+.-..|...+..=+...|.- .|+.. +...++. ...-.-.-...+.....+|-.|..
T Consensus 366 -------------eg~q~~Al~~L~~Wi~~~p~y----~~l~~-----a~~~~~~-~~~~s~~~~~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 366 -------------EGLQNQALKMLDKWIRNKPKY----VHLVS-----AGENEDF-ENTKSFLDSSHLAHIQELFLEAAR 422 (579)
T ss_pred -------------hhhHHHHHHHHHHHHHhCccc----hhccc-----cCccccc-cCCcCCCCHHHHHHHHHHHHHHHH
Confidence 233345555555555444331 11111 0000000 000000012345566677777766
Q ss_pred cCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 457 MGC--LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 457 ~~~--~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
.+| .++++.....-++-..|.+++|...++.|| ...|++..+|.++-..+-. +. .-+++...|.+|+
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLAN-~~---------~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLAN-GN---------RSEEAISAYNRAL 491 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhcC-Cc---------ccHHHHHHHHHHH
Confidence 667 478888888888888888999988899988 7888889999876544422 21 2466777788888
Q ss_pred hhcCh
Q 005434 535 TKVSA 539 (697)
Q Consensus 535 ~~~p~ 539 (697)
..-|.
T Consensus 492 qLqP~ 496 (579)
T KOG1125|consen 492 QLQPG 496 (579)
T ss_pred hcCCC
Confidence 76664
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.33 E-value=0.039 Score=60.91 Aligned_cols=198 Identities=17% Similarity=0.132 Sum_probs=120.4
Q ss_pred chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHH----HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH-
Q 005434 390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMD----MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE- 462 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~- 462 (697)
.+++..|..+|++||+..... ..-..++.++.+ .+.. .+ ........++|+.|+++-.. ...+
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GK------f~EA~~~~e~Al~I~~~~~~--~~~~~ 323 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GK------FAEAEEYCERALEIYEKLLG--ASHPE 323 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CC------hHHHHHHHHHHHHHHHHhhc--cChHH
Confidence 477889999999998754211 011222222221 1110 00 00022345667777776222 2333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434 463 --DIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (697)
Q Consensus 463 --~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a 533 (697)
.....-+..+...+.+++|..++.++++. .+|.-..+......+....|. .++++++|++|
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk----------~~ea~~~~k~a 393 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK----------YKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHH
Confidence 34555566677788999999998888731 122234566666666666663 78899999999
Q ss_pred HhhcC-------hhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHH
Q 005434 534 LTKVS-------ALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQARE 602 (697)
Q Consensus 534 l~~~p-------~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~ 602 (697)
|.... +....+||.+...+.+... +.+..+|..+..+. +..+ +..+.+-..|... +...|+++.|-+
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhC-CCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 98542 2225789999888765544 56788888888776 3322 2344555555444 456799999999
Q ss_pred HHHHHHh
Q 005434 603 MYKRFLA 609 (697)
Q Consensus 603 iy~~~i~ 609 (697)
+-++++.
T Consensus 472 ~~~~~~~ 478 (508)
T KOG1840|consen 472 LEEKVLN 478 (508)
T ss_pred HHHHHHH
Confidence 8888875
No 119
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.12 Score=54.38 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (697)
Q Consensus 310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~ 389 (697)
+.|...|-+.-..+-.+.+...++..+|+..+. +..+-.++-+.....|++|.....++.++-.
T Consensus 541 deald~f~klh~il~nn~evl~qianiye~led---~aqaie~~~q~~slip~dp~ilskl~dlydq------------- 604 (840)
T KOG2003|consen 541 DEALDCFLKLHAILLNNAEVLVQIANIYELLED---PAQAIELLMQANSLIPNDPAILSKLADLYDQ------------- 604 (840)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC---HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-------------
Confidence 444455444333333455666677777766553 4567777888888899999999999988843
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
.|.-..|-+.|-..-.-.|..- .-+.|+-.++. .....+++...|++|-...|...+.-+.-+
T Consensus 605 egdksqafq~~ydsyryfp~ni---e~iewl~ayyi--------------dtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNI---ETIEWLAAYYI--------------DTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred ccchhhhhhhhhhcccccCcch---HHHHHHHHHHH--------------hhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 2445556666555555556442 11111111110 023357888999998777676444334456
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (697)
..+.+.|++++|..+|...- +++|.+.+-....+.+.-
T Consensus 668 sc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhc
Confidence 88999999999999999877 899998776655555443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.011 Score=63.11 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
..+.+...+...+..+|+|.-+|..-.+...+.+ ..++.+.+++++...|..+-+|+.|+...+ ..|+...|-.++++
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~ 399 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNR 399 (484)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence 3566778888899999999999999999888776 568999999999999999999999999998 79999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHH
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNK 242 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~ 242 (697)
++...|+++..|...++-....++.
T Consensus 400 ~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 400 YLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCch
Confidence 9999999999999998877655543
No 121
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0049 Score=50.40 Aligned_cols=90 Identities=22% Similarity=0.169 Sum_probs=77.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT 670 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~ 670 (697)
+...|.+++|.+.+++++...|.....+...+.+....+ +.+.+.++|+.++...+.++..|...+......|+
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG------KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 345789999999999999998887777777777777777 88999999999999888888899999999999999
Q ss_pred hhhHHHHHHHHHhhcC
Q 005434 671 SETATAVYWRARKTLK 686 (697)
Q Consensus 671 ~~~a~~vy~ral~~~~ 686 (697)
.+.|..++.++++..+
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999999887654
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.13 Score=52.30 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHH--HHHHHHHHhcccCCCCC
Q 005434 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWL--LRISVEIRCVTRNSFSP 518 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~--~~i~l~~~~~~~~~~~~ 518 (697)
.++|..+|-..+..+|.+.+.-+...++..+-|..++|..+-...+. -|+- .++.. ...+-.+..|-
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT~~qr~lAl~qL~~Dym~aGl------ 122 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLTFEQRLLALQQLGRDYMAAGL------ 122 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHhhh------
Confidence 46788888888888888888888899999999999999888777662 3442 22211 11111222332
Q ss_pred CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHH---HhC
Q 005434 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI---QKD 595 (697)
Q Consensus 519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~---~~~ 595 (697)
++++.++|..-... | .-...--+..+..+.... .-++..+.|..... ..+......|...|.+... ...
T Consensus 123 ----~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 123 ----LDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATR-EWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred ----hhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhh
Confidence 56777777665431 1 000000011111111111 12222222222111 1122235666777877754 357
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC-c----hHHHHHHHHHHhcCC
Q 005434 596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN-T----SLWRDYYSTETKLGT 670 (697)
Q Consensus 596 ~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~-~----~lW~~y~~fE~~~G~ 670 (697)
++++|+.++++|+...|.++..-+...+++...| +...|-+.+++++++++.- + .+..-|. ..|.
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g------~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~----~lg~ 264 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKG------DYQKAVEALERVLEQNPEYLSEVLEMLYECYA----QLGK 264 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc------chHHHHHHHHHHHHhChHHHHHHHHHHHHHHH----HhCC
Confidence 8999999999999988888777777778887777 8899999999999988732 2 3333343 3688
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 005434 671 SETATAVYWRARKTLKDS 688 (697)
Q Consensus 671 ~~~a~~vy~ral~~~~~~ 688 (697)
++....-..+++...++.
T Consensus 265 ~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 265 PAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHccCCc
Confidence 888888888888777654
No 123
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.20 E-value=0.0005 Score=44.20 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434 207 NVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 207 ~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~ 237 (697)
.++.||.||+|.+..+|+ +..|+.|++||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 367788888888888875 688888888874
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.001 Score=51.74 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434 167 FCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (697)
Q Consensus 167 ~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~ 226 (697)
.....| +..+..+|++++..+|.++.+|...+...+ ..|+.+.|...|++++...|+++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 334445 578999999999999999999999999996 89999999999999999999864
No 125
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.0018 Score=50.99 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCC
Q 005434 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCP 223 (697)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r~l~~~p 223 (697)
+...|...+......+ +..+...|++++..+|+++.+|...+...+ ..| +...|...+++++...|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 5678888888877776 688999999999999999999999999886 678 79999999999999987
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.16 E-value=0.0032 Score=51.57 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.+...|..++......+ ...+...|++++...|.++..|...+.... ..|+.+.|...+.++
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~ 94 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 455678899999999998888888888777666 567889999999999998888988888886 688999999999999
Q ss_pred hhhCCC
Q 005434 219 LRVCPT 224 (697)
Q Consensus 219 l~~~p~ 224 (697)
++.+|.
T Consensus 95 ~~~~~~ 100 (100)
T cd00189 95 LELDPN 100 (100)
T ss_pred HccCCC
Confidence 988873
No 127
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.14 E-value=0.00096 Score=47.47 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (697)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~ 234 (697)
|.+|..++.... ..|+.+.|+.+|+++++.+|++..+|..+++
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568999999986 7999999999999999999999999988764
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.13 E-value=0.005 Score=65.84 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.|...|++|+..+|.++..|...+..+...|++++|...+++|+ ...|++...|.....+....|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg---------- 84 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLE---------- 84 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC----------
Confidence 567899999999999999999999999999999999999999999999 789999999988887777766
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMAL 550 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~ 550 (697)
+.+.+...|++|+...|.......|+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 47889999999998877665566776554
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.11 E-value=0.017 Score=64.23 Aligned_cols=203 Identities=18% Similarity=0.160 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+.+..|..+|++ ..+|..-+.++...|+..+|..+..+-+ . .|+...+|....+....
T Consensus 412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~~d------------ 469 (777)
T KOG1128|consen 412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVLHD------------ 469 (777)
T ss_pred chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhccC------------
Confidence 456677777777 4689999999999999999999999888 4 56677888766554421
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKF-FMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~ 598 (697)
.+ .|++|....+.. +.. =++|... ..+++ +.+.+-++..+..-+. ....|-.+=.-..+.++..
T Consensus 470 --~s---~yEkawElsn~~-sar-A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 470 --PS---LYEKAWELSNYI-SAR-AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred --hH---HHHHHHHHhhhh-hHH-HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhH
Confidence 22 266665433211 111 0011100 11111 2333444444432111 1222222222245678999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHH
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVY 678 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy 678 (697)
.|-+.|.+++...|.+..-|.....-....+ +..+|+..+..|+..+-.+..+|.+|.-.-.+.|..+.|.+.|
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~------~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK------KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHh------hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999999999988777777777 7799999999999987678899999999999999999999999
Q ss_pred HHHHhhc
Q 005434 679 WRARKTL 685 (697)
Q Consensus 679 ~ral~~~ 685 (697)
+|-+..-
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 9986543
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.10 E-value=0.0045 Score=56.74 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+..+|+-++...|.+..-|+...-.+...| +..+...|.+|..+.|++|......+.-.+ ..|+++.|++.|+.+
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~A 129 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL-ACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 566778999999999999999999999888877 689999999999999999999998888887 799999999999999
Q ss_pred hhhCCCC
Q 005434 219 LRVCPTS 225 (697)
Q Consensus 219 l~~~p~~ 225 (697)
+.++...
T Consensus 130 i~~~~~~ 136 (157)
T PRK15363 130 VRICGEV 136 (157)
T ss_pred HHHhccC
Confidence 9999543
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.42 Score=48.65 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
..+++|+++=++-++.-+.. .|-..|..+-.... ..++.++|+..+.+|++.+|++...-+.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~---------------~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL---------------ASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---------------hhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 55777777777666554433 24455555544322 2356889999999999999999888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~ 547 (697)
..++++..|+++.|.+.+++++ .++|.-...- .+.+.+.|.+- . .+.+ |.
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~ev----------------------l~~L~~~Y~~l-g--~~~~----~~ 269 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVL-EQNPEYLSEV----------------------LEMLYECYAQL-G--KPAE----GL 269 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHH-HhChHHHHHH----------------------HHHHHHHHHHh-C--CHHH----HH
Confidence 9999999999999999999999 7777521110 11111112221 0 1111 11
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Q 005434 548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN 627 (697)
Q Consensus 548 ~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~ 627 (697)
.|+ .++..... ...+-....+.+....|++.|.....+-+...| +...+-..++++..
T Consensus 270 ---~fL-----------~~~~~~~~-------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~ 327 (389)
T COG2956 270 ---NFL-----------RRAMETNT-------GADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA 327 (389)
T ss_pred ---HHH-----------HHHHHccC-------CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence 111 11211110 122223334555567788888888777777654 45556666766654
Q ss_pred cCCCC-CcccHHHHHHHHHHHHhhCC
Q 005434 628 LASVG-DKDSLVNARKLFESALATYD 652 (697)
Q Consensus 628 ~~~~~-~~~~~~raR~lye~al~~~~ 652 (697)
-.+.| .+.+..-.|++-..-+...|
T Consensus 328 daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cccccchhhhHHHHHHHHHHHHhhcC
Confidence 44332 23456666666666555444
No 132
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.0022 Score=49.90 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (697)
.+..+.|...|++++..+|.+++.|..++.++...|++++|...+++++ ...|+++
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL-ELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCC
Confidence 4678999999999999999999999999999999999999999999999 7888763
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.99 E-value=1.1 Score=51.99 Aligned_cols=185 Identities=10% Similarity=0.036 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005434 174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGED 253 (697)
Q Consensus 174 ~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~ 253 (697)
..+..+|-+++..+|.....|-....+.- ...++..|+.-|++|....|+...-|...++.-.+..+...+--..+..+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYr-d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYR-DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 35678999999999999999998888774 44589999999999999999877777766655332222212111112211
Q ss_pred cccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHH
Q 005434 254 KGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~ 333 (697)
.. ++...--..| ...+ .-.+..++...+..-|+.|+..-|.++..|..+
T Consensus 554 qk----a~a~~~k~nW--------~~rG-------------------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gL 602 (1238)
T KOG1127|consen 554 QK----APAFACKENW--------VQRG-------------------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGL 602 (1238)
T ss_pred hh----chHHHHHhhh--------hhcc-------------------ccccCccchhhHHHHHHHHhcCCchhHHHHHHH
Confidence 11 1110001122 2111 011122345567888999999999999999999
Q ss_pred HHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc
Q 005434 334 FEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN 406 (697)
Q Consensus 334 ~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~ 406 (697)
-+.|-+.+ ....+-++++++....|.+.-.-+..|-.+-. .|.+..|.+.+...+..
T Consensus 603 GeAY~~sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-------------~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 603 GEAYPESG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECD-------------NGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHhcC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHH
Confidence 88887654 34667888888888888763332333333321 35566666666665543
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.97 E-value=0.022 Score=66.60 Aligned_cols=165 Identities=8% Similarity=0.085 Sum_probs=98.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
.|.+.+.|...+..+...+++++|.++++.++ ..+|++..+|....-+..+.+. ....--+ .++...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l-~~~P~~i~~yy~~G~l~~q~~~----------~~~~~lv--~~l~~~ 93 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHL-KEHKKSISALYISGILSLSRRP----------LNDSNLL--NLIDSF 93 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCcceehHHHHHHHHHhhcc----------hhhhhhh--hhhhhc
Confidence 57788999999999999999999999999999 8999988888766555554443 1121111 445444
Q ss_pred ChhhhHHHHHHHHHHHHhh-hH---HHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Q 005434 538 SALESESLWLMALKFFMNQ-KH---YFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP 613 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~-~~---~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~ 613 (697)
+... =|. .++|+... ++ .-..+|. .+..+.+.|+.++|..+|+++++..|.
T Consensus 94 ~~~~---~~~-~ve~~~~~i~~~~~~k~Al~~---------------------LA~~Ydk~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 94 SQNL---KWA-IVEHICDKILLYGENKLALRT---------------------LAEAYAKLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred cccc---chh-HHHHHHHHHHhhhhhhHHHHH---------------------HHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence 4321 121 12222110 00 0001111 122234557777777777777777777
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC---C---chHHHHHHHHHHh
Q 005434 614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ---N---TSLWRDYYSTETK 667 (697)
Q Consensus 614 ~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~---~---~~lW~~y~~fE~~ 667 (697)
+......|++.-... ++++|+.++.+|+..+-. . .++|..|+.....
T Consensus 149 n~~aLNn~AY~~ae~-------dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 149 NPEIVKKLATSYEEE-------DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred cHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 777666666554332 567777777777765541 1 1567766654433
No 135
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0025 Score=50.75 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL 228 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l 228 (697)
+..+..++++++..+|.++.+|..++.... ..|+++.|...|++++...|+++..
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHH
Confidence 568899999999999999999999999996 8999999999999999999987644
No 136
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.93 E-value=0.0016 Score=46.32 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
|..|..++..+...|++++|.+++++++ +.+|++...|..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l-~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRAL-ALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999 899999999987654
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.76 E-value=1.6 Score=50.91 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCCh--hhHHHHHHhhcccCCCCCCCC
Q 005434 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP--KYWDWLARLKMTDSVSKDGTS 385 (697)
Q Consensus 308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~--~~w~~~a~~~l~~~~~~~~~~ 385 (697)
+..+|+..|++|.+--+++.+.+....+.+++-+ +.+.+..|.-...+.-|.-. .-|...+-++++
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~---~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe--------- 574 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEES---TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE--------- 574 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc---cHHHHHHHHHHHhhhchHHHHHhhhhhccccccC---------
Confidence 3467888899998877777788888777776543 45666666544444444332 235554444543
Q ss_pred cCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHH
Q 005434 386 EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (697)
Q Consensus 386 ~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~l 464 (697)
.+++..|..-|+.|+...|.+. .|.. +-+.+. ..+....+..+|.+|...+|.+.-.
T Consensus 575 ----a~n~h~aV~~fQsALR~dPkD~n~W~g---LGeAY~---------------~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 575 ----AHNLHGAVCEFQSALRTDPKDYNLWLG---LGEAYP---------------ESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ----ccchhhHHHHHHHHhcCCchhHHHHHH---HHHHHH---------------hcCceehHHHhhhhhHhcCcHhHHH
Confidence 3667788889999998888653 5543 222222 1355778899999999888876333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 465 AHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 465 w~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
-..-+-++...|.+.+|...+...+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333566777889999888887766
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=96.72 E-value=0.29 Score=52.67 Aligned_cols=138 Identities=10% Similarity=0.035 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHh---hcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434 390 PSQMQKAIQVYEEAL---KNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (697)
Q Consensus 390 ~~~~~~a~~vye~al---~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~ 463 (697)
+...+.|..+|.+|+ ..-|.-. -|.++..+........+ .......++..-++|++.+|.++-
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-----------~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-----------LELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHhcCCCCHH
Confidence 356788999999999 4444322 34455555443322111 245678899999999999999987
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-- 541 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-- 541 (697)
.-...+....-.++++.|...+++|+ .-+|++...|..+.-+..-.| +.+++.+..++|++..|..-
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G----------~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNE----------KIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHhccCchhhHH
Confidence 66666666666778999999999999 899999999988887776666 36888899999998877654
Q ss_pred -hHHHHH-HH
Q 005434 542 -SESLWL-MA 549 (697)
Q Consensus 542 -~~~lW~-~y 549 (697)
..++|. +|
T Consensus 409 ~~~~~~~~~~ 418 (458)
T PRK11906 409 VVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHH
Confidence 355665 44
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.72 E-value=0.035 Score=48.50 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=77.2
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST 664 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f 664 (697)
....|++++|.+.|++++...|.+ ...+...+......+ +.+.|..+|+.++..+|.+ +..|......
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG------KYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 456799999999999999887654 345555666666666 8899999999999988843 5788888888
Q ss_pred HHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 665 ETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 665 E~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
....|+.+.|..++.+++...|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 8899999999999999999988764
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.67 E-value=0.068 Score=49.09 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 005434 346 DDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMD 422 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~ 422 (697)
...+...++.+...+|++ ....+.+|+.... .+.++.|...|+.++...|+..+ ...+.+-..
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-------------~g~~~~A~~~l~~~~~~~~d~~l-~~~a~l~LA 92 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-------------QGDYDEAKAALEKALANAPDPEL-KPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCCCHHH-HHHHHHHHH
Confidence 355677788899999998 3346667777765 48899999999999998765531 111222111
Q ss_pred HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
.+. ...+..+.+...++. +...+..+..+...++++...|+.++|+..|++|+
T Consensus 93 ~~~-------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RIL-------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHH-------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 110 013557788888866 33345567788888999999999999999999875
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.071 Score=53.89 Aligned_cols=120 Identities=17% Similarity=0.097 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcC
Q 005434 348 MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP 426 (697)
Q Consensus 348 ~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~ 426 (697)
..-.-++.-+..+|++.+-|..+++.++. .++...|..-|.+|++-.|++. ++..|.......-
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-- 204 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMA-------------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-- 204 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHH-------------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Confidence 33344666778899999999999999986 5889999999999999888665 8888877654321
Q ss_pred CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
+ .....++..++++++..+|.+...-..++.-....|++.+|....+..+ ...|.+
T Consensus 205 ---~----------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~lp~~ 260 (287)
T COG4235 205 ---G----------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DLLPAD 260 (287)
T ss_pred ---C----------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCC
Confidence 1 2335689999999999999988766666766778999999999999988 555553
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.44 E-value=0.038 Score=48.22 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434 140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR 212 (697)
...+...|+.++..+|++ ...+...+....+.+ +..+...|++++..+|++ +.+|...+.... ..|+.+.|.
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~A~ 96 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCChHHHH
Confidence 456778999999999987 467777777766666 578999999999999885 678888888875 789999999
Q ss_pred HHHHHhhhhCCCCH
Q 005434 213 ALMQNGLRVCPTSE 226 (697)
Q Consensus 213 ~~~~r~l~~~p~~~ 226 (697)
..+++++...|++.
T Consensus 97 ~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 97 ATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHCcCCh
Confidence 99999999999875
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.33 E-value=0.025 Score=44.33 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
++..|...+..+...|++++|...+.+++ ...|++..+|..........+. +.+++.+.|++|++.-|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~~~~~~~~g~~~~~~~~---------~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNNAEAYYNLGLAYMKLGK---------DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCc---------cHHHHHHHHHHHHHcCc
Confidence 35678888888888888888888888888 6888888888887777766652 25777777888876443
No 144
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.29 E-value=0.04 Score=48.74 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434 615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRA 681 (697)
Q Consensus 615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ra 681 (697)
+++|+.||++- . ..+++|..+..... ....+|..|+.+.+..|+...|..||++|
T Consensus 69 LkiWi~ya~~~---~---------dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 69 LKIWLKYADNC---D---------EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred HHHHHHHHHhc---C---------CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 46899999652 2 35788998887644 55699999999999999999999999864
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.26 E-value=0.22 Score=53.36 Aligned_cols=143 Identities=13% Similarity=-0.039 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.++..+...+...|.++-+|..-++++...|+.++|.+.+++++ ...|++.-+|..|.+..++.+.
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~--------- 389 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGK--------- 389 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCC---------
Confidence 446778888888888889999999999999999999999999999999 7899999999999999888775
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
..++..+....+...|.. ...|.+.++-+...++. ..--.++.+.+...|+.+.|.
T Consensus 390 -~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~---------------------~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 390 -PQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNR---------------------AEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred -hHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCch---------------------HHHHHHHHHHHHhCCCHHHHH
Confidence 455666677776666533 56777655433322221 122244566666788888888
Q ss_pred HHHHHHHhCCCCCHHHH
Q 005434 602 EMYKRFLALPRPGLVLY 618 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~~~ 618 (697)
..+.++-........-|
T Consensus 446 ~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHHHHhccCCcHHH
Confidence 88888877654433333
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.12 Score=52.29 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccc
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKAD 522 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~ 522 (697)
..+......+.-+..||.+.+-|...+..++..|+...|..-|.+|. +.-|++.++|..|......... ..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL~g~n~~~~~g~aeaL~~~a~-------~~~ 208 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL-RLAGDNPEILLGLAEALYYQAG-------QQM 208 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcC-------Ccc
Confidence 46777777888899999999999999999999999999999999999 8999999999999988765432 114
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 523 ILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 523 ~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
..++.++|.++++.-|. +...+|..
T Consensus 209 ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 209 TAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred cHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 56788889999975543 33444443
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.19 E-value=0.062 Score=54.61 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHHH
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYSTE 665 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~fE 665 (697)
...|++++|...|+.++...|.+. ..+.+.+.+....+ +.+.|...|+.++..+|.+ ++.|..-+..-
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g------~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG------KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 345889999999999999888762 33333344444566 8899999999999999954 47777776666
Q ss_pred HhcCChhhHHHHHHHHHhhcCCcc
Q 005434 666 TKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 666 ~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
...|+.+.|..+|+++++..|++.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCH
Confidence 678999999999999999998774
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.15 E-value=0.057 Score=57.92 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT 470 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~ 470 (697)
++++.|..+|++-.+..|...+. .++.... .+.-.+|..++.+++..+|.+.++....++
T Consensus 183 ~~~~~ai~lle~L~~~~pev~~~--LA~v~l~------------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEVAVL--LARVYLL------------------MNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcHHHH--HHHHHHh------------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56889999999988888775422 2222221 011347888999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434 471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (697)
+++..++++.|.++.++|+ ...|.+.+.|...++..+..+.
T Consensus 243 fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAV-ELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHhcCCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999 7999999999999988888774
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.12 E-value=0.021 Score=45.34 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (697)
+..+.+..++++++..+|.++.+|..++.++...|++++|...+++++ ...|++...
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL-ELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH-HHCCCcHHH
Confidence 557899999999999999999999999999999999999999999999 788876544
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.11 E-value=0.094 Score=48.21 Aligned_cols=88 Identities=6% Similarity=-0.138 Sum_probs=53.6
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS 671 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~ 671 (697)
...|+++.|.++|+-++...|.+...|..........+ +...|-.+|.+|+...++++.....-..=-...|+.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g------~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK------HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34566666666666666666666666666665555555 666666666666666665555555555555556666
Q ss_pred hhHHHHHHHHHhhc
Q 005434 672 ETATAVYWRARKTL 685 (697)
Q Consensus 672 ~~a~~vy~ral~~~ 685 (697)
+.|++.|+.|+..+
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666655
No 151
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.07 E-value=1.1 Score=44.46 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
|.+..+-..++....+.|++..|...+.++. ...|++.+.|....-...+.|
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHHcc
Confidence 4444444445555555555555555555555 445555555544444443333
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.01 E-value=0.15 Score=54.74 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (697)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~ 408 (697)
+-..++.++.. ....+.+..+++++.+..|+ .+..+|+.++.. +.-.+|..+..++|+..|
T Consensus 171 Lv~~Ll~~l~~---t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-------------~~E~~AI~ll~~aL~~~p 231 (395)
T PF09295_consen 171 LVDTLLKYLSL---TQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-------------NEEVEAIRLLNEALKENP 231 (395)
T ss_pred HHHHHHHHHhh---cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-------------CcHHHHHHHHHHHHHhCC
Confidence 34444444432 22457788999999988864 667788888752 445689999999999888
Q ss_pred chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA 486 (697)
Q Consensus 409 ~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~ 486 (697)
... +....++|+.. .+..+.|..+.++|+...|.+...|...++.+...|+++.|...+.
T Consensus 232 ~d~~LL~~Qa~fLl~------------------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 232 QDSELLNLQAEFLLS------------------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CCHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 654 77788888765 2346889999999999999999999999999999999999975553
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.82 E-value=0.11 Score=52.40 Aligned_cols=89 Identities=11% Similarity=-0.037 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
.+....|...|.+||..+|.++-.++.-+.-+.+.|.++.|.+=++.|+ ...|+..+.|.+.-......|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~g--------- 163 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALG--------- 163 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccC---------
Confidence 3568899999999999999999999999999999999999999999999 788988888876554454444
Q ss_pred cchHHHHHHHHHHHhhcChh
Q 005434 521 ADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~ 540 (697)
+.+.+.+-|++||..-|..
T Consensus 164 -k~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 164 -KYEEAIEAYKKALELDPDN 182 (304)
T ss_pred -cHHHHHHHHHhhhccCCCc
Confidence 3677777799999877755
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.11 Score=52.25 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
-...+...|.+|+...|.|.-+...-+.-..+.| +..+.+-.+.||.++|...+.|.....-.+ .+|++..|-..|++
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKK 174 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHh
Confidence 3677889999999999999999888888777777 678999999999999999999998888776 78999999999999
Q ss_pred hhhhCCCCHHHHHHH
Q 005434 218 GLRVCPTSEELWVEY 232 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y 232 (697)
||...|+++..|...
T Consensus 175 aLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 175 ALELDPDNESYKSNL 189 (304)
T ss_pred hhccCCCcHHHHHHH
Confidence 999999987555443
No 155
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.39 Score=47.48 Aligned_cols=167 Identities=11% Similarity=-0.000 Sum_probs=84.4
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHH
Q 005434 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (697)
Q Consensus 453 ~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 532 (697)
+....+|.+.++ ..+..-+...|+-+.+..+..++. -.+|.+..+-..++......|. ...+..+|.+
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~-~~~~~d~~ll~~~gk~~~~~g~----------~~~A~~~~rk 125 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA-IAYPKDRELLAAQGKNQIRNGN----------FGEAVSVLRK 125 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh-ccCcccHHHHHHHHHHHHHhcc----------hHHHHHHHHH
Confidence 334445555555 555555555555555555555544 3455555555555555555542 4555556666
Q ss_pred HHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC
Q 005434 533 ILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL 610 (697)
Q Consensus 533 al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~ 610 (697)
+...-|+. ...|..-.--+...+ +.++.-|.++++..+. .+.+.....-++.-.|+.+.|+.++..+...
T Consensus 126 A~~l~p~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 126 AARLAPTD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HhccCCCC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 65544433 234433221222222 3455556666543321 2334444444444556666666666666666
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434 611 PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFE 645 (697)
Q Consensus 611 ~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye 645 (697)
++.+..+-...+.+-..++ ++..|+++=.
T Consensus 198 ~~ad~~v~~NLAl~~~~~g------~~~~A~~i~~ 226 (257)
T COG5010 198 PAADSRVRQNLALVVGLQG------DFREAEDIAV 226 (257)
T ss_pred CCCchHHHHHHHHHHhhcC------ChHHHHhhcc
Confidence 6655555555454444444 4455555443
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.67 E-value=0.37 Score=45.34 Aligned_cols=79 Identities=8% Similarity=-0.064 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
...|...+......+ +..+...|.+++...|+. +.+|...+.... ..|+.+.|...+++++...|.....|....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 567777777766666 578999999999987763 357888888885 899999999999999999998877766655
Q ss_pred HHHH
Q 005434 234 RMEL 237 (697)
Q Consensus 234 ~~E~ 237 (697)
.+..
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5543
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.67 E-value=0.015 Score=38.70 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434 450 VYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (697)
Q Consensus 450 ~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~ 482 (697)
.|++||+.+|.++..|..++.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.51 E-value=0.036 Score=45.53 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKG--DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~--~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~ 216 (697)
...+..+|++++...|+ +...|...+....+.| +.++..++++ +...|.++.....+|+-.+ ..|+.+.|+.+|+
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence 56788999999999996 4667887777766766 6788999998 7788887777777788776 7899999999998
Q ss_pred Hh
Q 005434 217 NG 218 (697)
Q Consensus 217 r~ 218 (697)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.49 E-value=0.23 Score=51.39 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHHhhcChhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHH
Q 005434 530 LKCILTKVSALESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRF 607 (697)
Q Consensus 530 f~~al~~~p~~~~~~lW~~y~~~~~~--~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~ 607 (697)
++.|++.+........-...++.+.. +.+.+.+.++.+.+. ....-...+..+|+.+..-...+..|.-+|+..
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 55666655433333333333333332 336677777775421 110012233445555554445689999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCCh-hhHHHHHHHHHhhc
Q 005434 608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTS-ETATAVYWRARKTL 685 (697)
Q Consensus 608 i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~-~~a~~vy~ral~~~ 685 (697)
...+++++.+....+-....++ +++.|.++.+.|+...+.++++...-+-.-...|.. +.+...........
T Consensus 194 ~~~~~~t~~~lng~A~~~l~~~------~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 194 SDKFGSTPKLLNGLAVCHLQLG------HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HCCS--SHHHHHHHHHHHHHCT-------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HhccCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 8888888888888887888888 899999999999998888899999999988888888 55665555544443
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.35 E-value=0.16 Score=51.71 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR 212 (697)
...+...|+..+..+|++. ..+...++.....| +..+...|.+++..+|++ +..|+..+.... ..|+.+.|+
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~~A~ 237 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHHHHH
Confidence 3466678888888898872 44444444444445 567888899998888874 567777666664 678899999
Q ss_pred HHHHHhhhhCCCCH
Q 005434 213 ALMQNGLRVCPTSE 226 (697)
Q Consensus 213 ~~~~r~l~~~p~~~ 226 (697)
.+|++.++..|++.
T Consensus 238 ~~~~~vi~~yP~s~ 251 (263)
T PRK10803 238 AVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHCcCCH
Confidence 99999999888864
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.18 E-value=1.6 Score=49.15 Aligned_cols=151 Identities=16% Similarity=0.023 Sum_probs=101.7
Q ss_pred HHhhCCCChhhHHHHHH--hhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHH--HHHHHHHHHhcCCccc
Q 005434 356 MQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD--LYTKFLMDMIAPKKEE 430 (697)
Q Consensus 356 ~~~~~p~~~~~w~~~a~--~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~--~yi~~~~~~~~~~~~~ 430 (697)
+....|.++..|..+-+ .++... ..+....|+..|++|++.-|+.. .|. ..+......+. ..
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~----------~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~--~~- 395 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSG----------DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ--PL- 395 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--Cc-
Confidence 34556778788765533 333211 13668899999999999999753 111 11122221111 00
Q ss_pred ccCCCCCchhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 005434 431 TRDSELPSHVEHYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (697)
Q Consensus 431 ~~~~~~~~~~~~~~~~ar~~ye~al~~--~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (697)
....+..+....++++.. ++..+.++...+-.....|++++|...+++|+ ...| +...|.....+.+
T Consensus 396 ---------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 396 ---------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred ---------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHHH
Confidence 123456777777777664 66677888888888888899999999999999 7778 4666766666666
Q ss_pred HhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 509 RCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
..| +.+++.+.|++|+..-|..
T Consensus 465 ~~G----------~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 465 LKG----------DNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HcC----------CHHHHHHHHHHHHhcCCCC
Confidence 666 3788999999999876643
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.13 E-value=0.077 Score=43.52 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 442 HYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~--~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
+..+.|...|++++...|. +...|...+..+.+.|++++|..++++ . ...|.+..............+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~------- 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGK------- 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT--------
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCC-------
Confidence 5678999999999999885 466788889999999999999999988 5 5566665666555666666653
Q ss_pred ccchHHHHHHHHHH
Q 005434 520 KADILSIFELLKCI 533 (697)
Q Consensus 520 ~~~~~~~~~~f~~a 533 (697)
.+++.++|++|
T Consensus 74 ---y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 ---YEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHhcC
Confidence 67777777664
No 163
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.02 E-value=0.03 Score=37.20 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 005434 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212 (697)
Q Consensus 179 ~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR 212 (697)
.|++|+..+|+++..|..++.+.. ..|+.+.|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 378899999999999999999885 788888876
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=4.8 Score=42.65 Aligned_cols=128 Identities=15% Similarity=0.089 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhhcCCchh-HHHHH--HHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc----HH
Q 005434 391 SQMQKAIQVYEEALKNVPSSM-IFDLY--TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----ED 463 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~-lw~~y--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~----~~ 463 (697)
.+.+++...|+++|..-|... .-..+ .+-++..-. ..++. -.++....+-+.|..||..+|.+ ..
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~-~gN~~-------fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE-RGNDA-------FKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh-hhhhH-------hhccchhHHHHHHHHhhcCCccccchhHH
Confidence 568899999999999887543 11111 111221100 01110 12467889999999999999975 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
++..-+....+.|+..+|..-...|+ ...|.-..-...+..-.+..+ +.+.+.+-|++|++.-
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le----------~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALE----------KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhc
Confidence 78888888899999999999999998 565554444455554444443 3566777788887643
No 165
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=8.1 Score=42.26 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|-.|+...|.+.-|...-..-..+.+ +..+.+==.+++.++|..|+.|-.-..-.+ -.|+++.|...|..|
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILAYSEG 96 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHHHHHH
Confidence 556778999999999998888766555444444 556656666788899999999987766654 689999999999999
Q ss_pred hhhCCCCHHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRME 236 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E 236 (697)
|...|++..|-......+
T Consensus 97 L~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 97 LEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hhcCCchHHHHHhHHHhh
Confidence 999999888877777665
No 166
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.59 E-value=6.5 Score=40.62 Aligned_cols=205 Identities=11% Similarity=0.038 Sum_probs=118.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCC
Q 005434 301 VDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380 (697)
Q Consensus 301 ~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~ 380 (697)
..++....+..|..-|..|++--|+++.....-...|-.++.+ .-+-.=++..++.-|+=...-+..+...+.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks---k~al~Dl~rVlelKpDF~~ARiQRg~vllK---- 118 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS---KAALQDLSRVLELKPDFMAARIQRGVVLLK---- 118 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC---ccchhhHHHHHhcCccHHHHHHHhchhhhh----
Confidence 3445555677889999999998887754433333333344421 222223455566666522222222222222
Q ss_pred CCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH---HHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM---DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (697)
Q Consensus 381 ~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~ 456 (697)
.|.++.|..-|...|+..|+.. .-.++-++.. .+.....-. .-...++...+.......++
T Consensus 119 ---------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~------s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 119 ---------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLK------SASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred ---------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHH------HHhcCCchhhHHHHHHHHHh
Confidence 5889999999999999988543 2222322211 100000000 00012445667777778888
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
..|=+.+++..-++.+...|.+..|..=++.+- .--.+|.+....-.+|+-..| +.+........||+.
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vg----------d~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVG----------DAENSLKEIRECLKL 252 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhh----------hHHHHHHHHHHHHcc
Confidence 888888999999999999999998876665554 334456666665555555544 345555556677765
Q ss_pred cC
Q 005434 537 VS 538 (697)
Q Consensus 537 ~p 538 (697)
-|
T Consensus 253 dp 254 (504)
T KOG0624|consen 253 DP 254 (504)
T ss_pred Cc
Confidence 54
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.55 E-value=2 Score=44.25 Aligned_cols=124 Identities=12% Similarity=0.015 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC
Q 005434 523 ILSIFELLKCILTKVS----ALESESLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD 595 (697)
Q Consensus 523 ~~~~~~~f~~al~~~p----~~~~~~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~ 595 (697)
++.+.+.|++|+.... +.....+....++.++.. + +.+...|++|...+...........+....+.+..+.|
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 3445555666655321 111233444445555444 3 45667777777766544210001112223455667889
Q ss_pred CHHHHHHHHHHHHhCCCC----C--H-HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 596 GIQQAREMYKRFLALPRP----G--L-VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 596 ~~~~AR~iy~~~i~~~p~----~--~-~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
.+++|.++|++.+..+-. . . .++...+-.-...+ ++..|+..|++..+.+|
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~------D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG------DYVAARKALERYCSQDP 227 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHGTTST
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCC
Confidence 999999999999875421 1 1 24455554555556 89999999999998887
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.52 E-value=11 Score=43.34 Aligned_cols=139 Identities=15% Similarity=0.037 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC-----C-CCC-------CCChHHHH--HHHHHHhCCHHHHHHHHH
Q 005434 543 ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG-----G-GES-------GFSLPSAI--INLVIQKDGIQQAREMYK 605 (697)
Q Consensus 543 ~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~-----~-~~~-------~~~l~~~y--l~~~~~~~~~~~AR~iy~ 605 (697)
..||.-|.+|++..+ +.+-..|..|...+..-. + .++ .......| ...+...|++-+|-+.|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578998999999888 456677777766542100 0 001 11112223 122334577888888888
Q ss_pred HHHh------CCCC---------------CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh---------------
Q 005434 606 RFLA------LPRP---------------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALA--------------- 649 (697)
Q Consensus 606 ~~i~------~~p~---------------~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~--------------- 649 (697)
+|-. +|-. ..++.....++|..-+ ...+|-.+|.+|=.
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG------YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch------hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 7643 2211 1233444455665443 67777777766421
Q ss_pred --------hCC-CCchHHHHHHHHHHhcCChhhHHHH------HHHHHhhcCC
Q 005434 650 --------TYD-QNTSLWRDYYSTETKLGTSETATAV------YWRARKTLKD 687 (697)
Q Consensus 650 --------~~~-~~~~lW~~y~~fE~~~G~~~~a~~v------y~ral~~~~~ 687 (697)
..+ ++|.+....++|=.++.+.++|..+ |++|++-+.+
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN 1118 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 112 5678999999998888888888775 5667766643
No 169
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=3.5 Score=41.14 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHH
Q 005434 583 LPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYY 662 (697)
Q Consensus 583 l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~ 662 (697)
+..+|+.+..-.+.+..|.=||+.+-..+||.+.+....+-....++ +++.|-.+.+.|+...+++++.....+
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~------~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG------RYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc------CHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 56677777766667899999999999988888887777777777777 899999999999998888898888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhhcCCccccccCCC
Q 005434 663 STETKLGTSETATAVYWRARKTLKDSTALTALPD 696 (697)
Q Consensus 663 ~fE~~~G~~~~a~~vy~ral~~~~~~~~f~~~~~ 696 (697)
-.=...|....+..=+-.-++....+..|+.-++
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ 282 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLN 282 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHH
Confidence 8877777775544433333444445556665443
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.06 E-value=1.5 Score=40.00 Aligned_cols=118 Identities=19% Similarity=0.033 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc---HHHHHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---EDIAHR 467 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~---~~lw~~ 467 (697)
+....+...++.-++..|... +...+.+....... ..+..+.|...|+.++...|.. +-.++.
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~-------------~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAY-------------EQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345556667777777766552 22233332221110 1366899999999999986443 346778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
.+.++...|++++|..+++.. ...|.....+....++....| +.+.++..|++||
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g----------~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI--PDEAFKALAAELLGDIYLAQG----------DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHhC
Confidence 899999999999999999663 234445667777777777776 4788999999875
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.01 E-value=3.1 Score=46.79 Aligned_cols=152 Identities=10% Similarity=-0.009 Sum_probs=99.9
Q ss_pred hcCCCchHHHHHHHHHHHHccccC--cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHH
Q 005434 321 EALPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398 (697)
Q Consensus 321 ~~~p~~~~~~~~~~~~~~~fe~~~--~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~ 398 (697)
...|.+.+.+..|+.....+.... ....+..+++++++..|+....|-.++..+....... + .....+..+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-~----~~~~~l~~a~~ 405 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-P----LDEKQLAALST 405 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-C----ccHHHHHHHHH
Confidence 345677777777776654433211 2457778899999999999877766555432211100 0 01234566666
Q ss_pred HHHHHhhc--CCc-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 005434 399 VYEEALKN--VPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL 475 (697)
Q Consensus 399 vye~al~~--~~~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~ 475 (697)
..++++.. .+. ...+....-. .. ..+..+.|...|++|+..+| +...|...+.++...
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~--~~----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~ 466 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQ--AL----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK 466 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHH--HH----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 66665553 222 2233333211 11 13568899999999999999 567888899999999
Q ss_pred CCHHHHHHHHHHHhhccCCCcH
Q 005434 476 GKLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 476 ~~~~~A~~l~~~al~~~~P~~~ 497 (697)
|++++|...+++|+ ...|..+
T Consensus 467 G~~~eA~~~~~~A~-~L~P~~p 487 (517)
T PRK10153 467 GDNRLAADAYSTAF-NLRPGEN 487 (517)
T ss_pred CCHHHHHHHHHHHH-hcCCCCc
Confidence 99999999999999 7778754
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.01 E-value=1.6 Score=41.14 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------
Q 005434 140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN-------- 207 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~-------- 207 (697)
...+...|++++...|+. ...|...+..+...| +..+...|.+++..+|.++..|...+.... ..|.
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~ 129 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH-KRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHhHhhCH
Confidence 456678888888877654 356777777666666 578899999999999999888887777664 5555
Q ss_pred ------HHHHHHHHHHhhhhCCCC
Q 005434 208 ------VTAARALMQNGLRVCPTS 225 (697)
Q Consensus 208 ------~~~aR~~~~r~l~~~p~~ 225 (697)
...|..+++++++..|.+
T Consensus 130 ~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 130 DEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchh
Confidence 355666666666666653
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.89 E-value=1.1 Score=42.45 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=58.2
Q ss_pred hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (697)
Q Consensus 364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (697)
...+..++..+.. .++++.|...|+++++..+... ....+...-.-.. ..+
T Consensus 35 a~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------~~g 86 (172)
T PRK02603 35 AFVYYRDGMSAQA-------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------SNG 86 (172)
T ss_pred HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------HcC
Confidence 3445566666653 4789999999999998655421 1122222211111 135
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK 477 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~ 477 (697)
..+.|...|++|+...|.+...+..++..+...|.
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 57899999999999999998888888888887766
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.65 E-value=1 Score=42.28 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=59.9
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHH-
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET- 666 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~- 666 (697)
....|.++.|...|.+++...|.. ...+...+.+....+ ..+.|...|++++...+.....|........
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g------~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG------EHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345688888888888888765442 235666666666666 7888888999988887766666655555555
Q ss_pred ------hcCChhh-------HHHHHHHHHhhcCC
Q 005434 667 ------KLGTSET-------ATAVYWRARKTLKD 687 (697)
Q Consensus 667 ------~~G~~~~-------a~~vy~ral~~~~~ 687 (697)
..|+.+. +..+|++++...|+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5667664 44455555544443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.54 E-value=1 Score=39.69 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=62.8
Q ss_pred HhHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhcccC
Q 005434 441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCVTRN 514 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~~~~ 514 (697)
.+..++|...|++|+..++.. ...++.++..+...|++++|..++++++ ..+|+ +..++..+.......|.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~~p~~~~~~~l~~f~Al~L~~~gr-- 90 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EEFPDDELNAALRVFLALALYNLGR-- 90 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHHCCC--
Confidence 356789999999999986554 4689999999999999999999999999 78898 66677665544444443
Q ss_pred CCCCCccchHHHHHHHHHHH
Q 005434 515 SFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 515 ~~~~~~~~~~~~~~~f~~al 534 (697)
.+++.+.+..++
T Consensus 91 --------~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 --------PKEALEWLLEAL 102 (120)
T ss_pred --------HHHHHHHHHHHH
Confidence 455555555544
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.30 E-value=7.4 Score=37.88 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHH---
Q 005434 346 DDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYT--- 417 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi--- 417 (697)
...+...++.+...||.+ +...+.+|..+.. .++.+.|...|++-++..|+.. -+-.|.
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-------------~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-------------QGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------------TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 456666677777777765 3345555555543 3667778888888887777654 111111
Q ss_pred -HHHHHHhc-CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH----------HHH-------HHHHHHHHhcCCH
Q 005434 418 -KFLMDMIA-PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----------DIA-------HRYVTLYLQLGKL 478 (697)
Q Consensus 418 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~----------~lw-------~~y~~l~~~~~~~ 478 (697)
.+...... .... -++....|...|+..+..-|.++ .+. +.=++++.+.|.+
T Consensus 88 ~~~~~~~~~~~~~~----------D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 88 SYYKQIPGILRSDR----------DQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH-TT-------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred HHHHhCccchhccc----------ChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 11110000 0001 13456678888888888877752 111 2236777888999
Q ss_pred HHHHHHHHHHhhccCCCcHHH
Q 005434 479 DEARKLAAKLCSGKLSDSVQL 499 (697)
Q Consensus 479 ~~A~~l~~~al~~~~P~~~~l 499 (697)
..|..-++..+ ..+|++...
T Consensus 158 ~aA~~r~~~v~-~~yp~t~~~ 177 (203)
T PF13525_consen 158 KAAIIRFQYVI-ENYPDTPAA 177 (203)
T ss_dssp HHHHHHHHHHH-HHSTTSHHH
T ss_pred HHHHHHHHHHH-HHCCCCchH
Confidence 99998899999 789997443
No 177
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.30 E-value=0.21 Score=32.60 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (697)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~ 225 (697)
|.+|...+...+ ..|+++.|+..|+++++..|++
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 467888888886 7899999999999999999963
No 178
>PRK11906 transcriptional regulator; Provisional
Probab=93.28 E-value=8.7 Score=41.69 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=101.6
Q ss_pred CCCch---HHH--HHHHHHHHHccccC--cHHHHHHHHHHHH---hhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434 323 LPSSF---NLR--QRFFEIVEATNLAQ--SDDMHDKILSDMQ---RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (697)
Q Consensus 323 ~p~~~---~~~--~~~~~~~~~fe~~~--~~~~~~~il~~~~---~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~ 392 (697)
-|.+. +.| ..++.....+.... ..+.+..++.+++ ...|+....+..+|.-++...... . .+....
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g--~--~~~~~~ 319 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG--K--SELELA 319 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc--C--CCchHH
Confidence 35565 556 55554444432211 2356666799999 777777776666665554321100 0 002456
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005434 393 MQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY 472 (697)
Q Consensus 393 ~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~ 472 (697)
...|+..-++|++..+.+. ++.+....... ..+..+.+...|++|+..+|.+...|..++-++
T Consensus 320 ~~~a~~~A~rAveld~~Da----~a~~~~g~~~~-------------~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 320 AQKALELLDYVSDITTVDG----KILAIMGLITG-------------LSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHHhcCCCCH----HHHHHHHHHHH-------------hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 7788888999998888753 33333332110 123378899999999999999999999999989
Q ss_pred HhcCCHHHHHHHHHHHhhccCCC
Q 005434 473 LQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 473 ~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
.-.|+.++|+..+++|+ +-.|.
T Consensus 383 ~~~G~~~~a~~~i~~al-rLsP~ 404 (458)
T PRK11906 383 FHNEKIEEARICIDKSL-QLEPR 404 (458)
T ss_pred HHcCCHHHHHHHHHHHh-ccCch
Confidence 99999999999999999 77776
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.07 E-value=1.9 Score=44.59 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~ 466 (697)
.++++.|.+.++..-+...+.. +..+|+.+..+ .+.+..+.-+|+......+.++.+..
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHHH
Confidence 4789999999988654444332 55666655432 12356789999997776667889998
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (697)
..+-..+..|++++|.+++..|+ ...|++++.....+-+....|.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al-~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEAL-EKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHC-CC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 7899999988887777766664
No 180
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.97 E-value=14 Score=39.02 Aligned_cols=254 Identities=14% Similarity=0.016 Sum_probs=152.0
Q ss_pred chHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005434 174 GRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (697)
Q Consensus 174 ~~~~~~~~ral~~~p~~-~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~ 252 (697)
.++...+.++-+.-+++ -..-+.-++..+ ..|+.+.||.-.++.+...|.++.+-..-.+.....++........-..
T Consensus 135 ~~an~yL~eaae~~~~~~l~v~ltrarlll-~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 135 DRANRYLAEAAELAGDDTLAVELTRARLLL-NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 47788888888774432 345666677776 7899999999999999999998877666665555444322211110000
Q ss_pred ccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH
Q 005434 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (697)
Q Consensus 253 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~ 332 (697)
.. .. .+. +.++. .+. ...-+.+.+.+...-. .+-...
T Consensus 214 ~k-----------a~-----------~l~------------~~e~~----~le---~~a~~glL~q~~~~~~--~~gL~~ 250 (400)
T COG3071 214 RK-----------AG-----------LLS------------DEEAA----RLE---QQAWEGLLQQARDDNG--SEGLKT 250 (400)
T ss_pred HH-----------cc-----------CCC------------hHHHH----HHH---HHHHHHHHHHHhcccc--chHHHH
Confidence 00 00 000 00000 000 0011222222222110 011111
Q ss_pred HHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH
Q 005434 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI 412 (697)
Q Consensus 333 ~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l 412 (697)
+|+ ...+.--++|.+-..+|.+.+. .+..+.|..+.+++++..-+..+
T Consensus 251 ~W~-------------------~~pr~lr~~p~l~~~~a~~li~-------------l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 251 WWK-------------------NQPRKLRNDPELVVAYAERLIR-------------LGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred HHH-------------------hccHHhhcChhHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhccChhH
Confidence 111 1111112446666677777664 57788999999999988766653
Q ss_pred HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005434 413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492 (697)
Q Consensus 413 w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~ 492 (697)
.. ++.... .++.+......++.+...|.+|.++.....+..+++...+|...++.|++
T Consensus 299 ~~-~~~~l~-------------------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-- 356 (400)
T COG3071 299 CR-LIPRLR-------------------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK-- 356 (400)
T ss_pred HH-HHhhcC-------------------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--
Confidence 22 222211 12345667777888888999999999999999999999999999999993
Q ss_pred CCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 493 LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 493 ~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
.-.+..-|....+.....|. .+.+.+++++++.
T Consensus 357 ~~~s~~~~~~la~~~~~~g~----------~~~A~~~r~e~L~ 389 (400)
T COG3071 357 LRPSASDYAELADALDQLGE----------PEEAEQVRREALL 389 (400)
T ss_pred cCCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHH
Confidence 34455666666666666653 5777788888875
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.51 E-value=26 Score=40.93 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 005434 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSMIFDLYTKFLMDMIA 425 (697)
Q Consensus 347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~-~~~lw~~yi~~~~~~~~ 425 (697)
..+-+-+.++++.||+.+..-..-|-.... .|+.+.|..+ -+++...+ ++.+--..+.+ .+.
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r-------------~gk~~ea~~~-Le~~~~~~~~D~~tLq~l~~---~y~ 88 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFR-------------LGKGDEALKL-LEALYGLKGTDDLTLQFLQN---VYR 88 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------hcCchhHHHH-HhhhccCCCCchHHHHHHHH---HHH
Confidence 345555678888899876553333333222 2445555533 34444332 32221122222 221
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-HHHHH
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-VQLWL 501 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-~~lW~ 501 (697)
..+..+++..+|++|+.++|. +++-..|..-+.+.+++.+-.++--+.- ..+|+. .-+|.
T Consensus 89 --------------d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly-K~~pk~~yyfWs 149 (932)
T KOG2053|consen 89 --------------DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY-KNFPKRAYYFWS 149 (932)
T ss_pred --------------HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCcccchHHH
Confidence 135578899999999999998 6666565555666666665444443333 456765 35554
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.50 E-value=5 Score=39.07 Aligned_cols=150 Identities=9% Similarity=-0.039 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHHHHhccc
Q 005434 442 HYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ-----LWLLRISVEIRCVTR 513 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~-----lW~~~i~l~~~~~~~ 513 (697)
++...|...|+..+...|.+ ++..+..+.-+-..|+++.|...+++.+ ..+|++.. .+.....+....+..
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi-~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI-KLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 56788999999998876664 5666666666778999999999999999 78998632 122222222111100
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHH-HHHHHH
Q 005434 514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSA-IINLVI 592 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~-yl~~~~ 592 (697)
....+.+....+...|+..+...|.+....-=..++.. ++..+.. ... -..|..
T Consensus 98 -~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~-------l~~~la~-----------------~e~~ia~~Y~ 152 (203)
T PF13525_consen 98 -RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE-------LRNRLAE-----------------HELYIARFYY 152 (203)
T ss_dssp --TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-------HHHHHHH-----------------HHHHHHHHHH
T ss_pred -hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH-------HHHHHHH-----------------HHHHHHHHHH
Confidence 00011223556777888888888865422111111110 1110000 011 245666
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVL 617 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~ 617 (697)
+.|.+..|..-|+.++...|.+...
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchH
Confidence 7889999999999999988877553
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.29 E-value=1.4 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
.++..+..+..+.+.|+.++|+.+++..+ ..+|++
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~-k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVI-KRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCC
Confidence 35555666666666667777777777766 566664
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=92.12 E-value=0.95 Score=41.97 Aligned_cols=83 Identities=7% Similarity=0.022 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+..+|.-.+...|.+.+.|+..+..+...+ +.++...|..|..+.+++|..-...+.-.+ ..|+...|+..|+-+
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l-~l~~~~~A~~~f~~a 131 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL-LMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH-HhCCHHHHHHHHHHH
Confidence 456778999999999999999999999887766 789999999999999999888777777666 789999999999999
Q ss_pred hhhCCC
Q 005434 219 LRVCPT 224 (697)
Q Consensus 219 l~~~p~ 224 (697)
+. .|.
T Consensus 132 ~~-~~~ 136 (165)
T PRK15331 132 NE-RTE 136 (165)
T ss_pred Hh-Ccc
Confidence 98 454
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=12 Score=38.84 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=36.3
Q ss_pred HHHHHhcCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434 166 EFCRQRKNGRMKKVLAQVIRFHPK---VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (697)
Q Consensus 166 ~~~~~~~~~~~~~~~~ral~~~p~---~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y 232 (697)
+|..+..+..++.+++-.+...-. +.++|+.++.|.+ |+.+.|-..|.-......-..++|+..
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnL 97 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL---GDYEEALNVYTFLMNKDDAPAELGVNL 97 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh---ccHHHHHHHHHHHhccCCCCcccchhH
Confidence 444544566667776666643322 3467777777653 677777777766655332223455443
No 186
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=28 Score=38.82 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS 490 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~ 490 (697)
.++.+...++ ..++.+..+-..+++.+-+.|++++|.+||+..++
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566666666 34566777888899999999999999999999883
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.02 E-value=6.2 Score=40.64 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=63.4
Q ss_pred HHHh-CCHHHHHHHHHHHHhCCCC--C----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-------h
Q 005434 591 VIQK-DGIQQAREMYKRFLALPRP--G----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-------S 656 (697)
Q Consensus 591 ~~~~-~~~~~AR~iy~~~i~~~p~--~----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-------~ 656 (697)
+... ++++.|.+.|++|+..... + .......+.+...++ +.+.|-++|+++...+-.++ +
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~------~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG------RYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3345 7999999999999985321 1 347788889988888 99999999999998654211 4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 657 LWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 657 lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
.++.-+-.-...||+..|+..+++.....|
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455444455557999999999999876653
No 188
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=5.8 Score=42.02 Aligned_cols=124 Identities=12% Similarity=-0.011 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-------------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~ 456 (697)
.+++..|..-|++|+..+.... .-..++++..-+ ...+....|....++++.
T Consensus 221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~---------------lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY---------------LKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH---------------HhhhhHHHHHHHHHHHHh
Confidence 4678889999999988765221 011111111111 122445678888899999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
.+|.+.+....-++-++..|.++.|+..+.+++ +..|.|..+=...+.+-.+... ..++-+++|.+.+..
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~l~~k~~~---------~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIKLKQKIRE---------YEEKEKKMYANMFAK 355 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhc
Confidence 999999988888888999999999999999999 7899998877777766655432 124445667777665
Q ss_pred cC
Q 005434 537 VS 538 (697)
Q Consensus 537 ~p 538 (697)
.+
T Consensus 356 ~~ 357 (397)
T KOG0543|consen 356 LA 357 (397)
T ss_pred cc
Confidence 43
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.67 E-value=40 Score=39.47 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhh-HHHHHHhhcccCCCCCCCCcC
Q 005434 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGTSED 387 (697)
Q Consensus 309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~-w~~~a~~~l~~~~~~~~~~~~ 387 (697)
++.|..+|++|++..|+ .++...+|..+.+-. .....+++-=++-+.+|+++-. |....-+.....+. .+.
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~-~~~--- 164 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSE-NEL--- 164 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCC-ccc---
Confidence 45778888888888888 677777777776532 2234444444566788888554 54333222211110 000
Q ss_pred ccchHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc--CCCcH
Q 005434 388 IVPSQMQKAIQVYEEALKNV---PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM--GCLTE 462 (697)
Q Consensus 388 ~~~~~~~~a~~vye~al~~~---~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~--~~~~~ 462 (697)
...--+--|....+.-++.- .+..-...|....+. .+..++|..++..-+.. -+.++
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~------------------~~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL------------------QGKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHhccccch
Confidence 00011223444444444332 122222334333332 12244555555332221 12233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
.+=..-.+++...++..+..++..+++ ...|++ |..|++
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll-~k~~Dd---y~~~~~ 265 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLL-EKGNDD---YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHH-HhCCcc---hHHHHH
Confidence 444455677777888888888888888 666766 444444
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=28 Score=37.14 Aligned_cols=173 Identities=12% Similarity=-0.034 Sum_probs=82.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh-hH---
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SE--- 543 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~-~~--- 543 (697)
-++.+.-.|++++|.++.-..+ +-.+.+.+--..+-... .+.. +.+....-|+++|+.-|... +.
T Consensus 175 ka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vrg~~~-yy~~---------~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVRGLCL-YYND---------NADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhccccc-cccc---------chHHHHHHHhhhhccChhhhhHHhHh
Confidence 3667777899999988877777 45555433221111111 1111 35666667889887655322 21
Q ss_pred ------HHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH---HHhCCHHHHHHHHHHHHhCCC
Q 005434 544 ------SLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV---IQKDGIQQAREMYKRFLALPR 612 (697)
Q Consensus 544 ------~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~---~~~~~~~~AR~iy~~~i~~~p 612 (697)
..|..-.+-.-..+ ..+...|..|+.+-+. +.......|..-. .+.|....|..--+.++++.|
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 22221111111111 1233445555433111 1333344454432 244666666666666666554
Q ss_pred CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434 613 PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 613 ~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~ 663 (697)
.-++-++.-+.=...++ +.+.|..-|+.|++.-.+ +++=..+.+
T Consensus 319 syikall~ra~c~l~le------~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALE------KWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 43333322222222222 566777777777765433 433333333
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.07 E-value=1.2 Score=47.97 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=61.2
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGV---WIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (697)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~l---W~~~a~~e~~~~~~~~~aR~~~~r~l~~~ 222 (697)
..|++...|......+.+.+ ++.+...|+++|.++|+++.. |...+.... ..|+++.|...|++++...
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence 57999999999999888877 689999999999999999854 888877775 7999999999999999973
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.06 E-value=1.1 Score=40.53 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434 173 NGRMKKVLAQVIRFHPKV-----PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL 228 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~-----~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l 228 (697)
+..+.+.|+.....+|-. .+||+.++.|. .++.+.|...++|-++.||+|+.+
T Consensus 26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCCCc
Confidence 678999999999999975 37999999875 689999999999999999998864
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=89.99 E-value=3.4 Score=38.37 Aligned_cols=85 Identities=6% Similarity=-0.026 Sum_probs=48.5
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE 672 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (697)
..|.++.|..+|.-++-..|.+..+|+..+.....++ +.+.|-.+|..|......+|.....-.+--...|+.+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k------~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK------QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 4566666666666666666666666666665555555 5666666666666554444432222333334456666
Q ss_pred hHHHHHHHHHh
Q 005434 673 TATAVYWRARK 683 (697)
Q Consensus 673 ~a~~vy~ral~ 683 (697)
.|+..|+-++.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666666555
No 194
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.95 E-value=0.68 Score=30.11 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
++.|...+..+...|++++|++.+++++ ...|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al-~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL-ELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHCcCC
Confidence 4678899999999999999999999999 777763
No 195
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.95 E-value=0.66 Score=46.77 Aligned_cols=52 Identities=23% Similarity=0.155 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+.++|-.+|++|+...|+++++.+.|.+|-+.+.++-.|..+|-+|+..-|.
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 6777777888887777777777777888777777777777777777766553
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.75 E-value=6 Score=34.89 Aligned_cols=85 Identities=15% Similarity=0.031 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC---cHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIA 465 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~---~~~lw 465 (697)
.|+.++|...|++++..-.+.. .-..++.+--..- ..+..+.+..+++.++...|. +..+.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------NLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 4789999999999999654432 3334443321110 136689999999999998777 77888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
..++-.+...|+.++|...+-.++
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889988999999999988887766
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.41 E-value=11 Score=37.96 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=62.3
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH-----HHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLV-----LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL-----WRD 660 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~-----~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l-----W~~ 660 (697)
....|++++|...|++++...|.+.. +++.++. ...+ +.+.|...|++.+..+|+++.+ -+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ay--y~~~------~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAY--YKNA------DLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH--HhcC------CHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34679999999999999998887643 3444443 4455 8999999999999999966522 111
Q ss_pred HHHHHHh-------------cCCh---hhHHHHHHHHHhhcCCcc
Q 005434 661 YYSTETK-------------LGTS---ETATAVYWRARKTLKDST 689 (697)
Q Consensus 661 y~~fE~~-------------~G~~---~~a~~vy~ral~~~~~~~ 689 (697)
.+.+... ..|. ..|..-+++.++.+|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 1212211 1122 356688899999998774
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.40 E-value=3.6 Score=41.30 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=64.9
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434 593 QKDGIQQAREMYKRFLALPRPGL-----VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST 664 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~-----~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f 664 (697)
..|++..|...|..++...|.+. .+|+.=..+ .++ +.+.|-.+|..+++.+|++ ++..+.-..-
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg------~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQG------DYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcc------cchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 45678888888888888777653 355443333 445 7788888888888888843 4777777777
Q ss_pred HHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 665 ETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 665 E~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
..+.|+.+.|..+++..++..|+..
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 7788888888888888888887653
No 199
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=39 Score=37.26 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHhhcCCchhH---------------HHHHHHHHHHHhcC-CcccccCCCCCchhHhHHHHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMI---------------FDLYTKFLMDMIAP-KKEETRDSELPSHVEHYISHLLTVYEK 453 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~l---------------w~~yi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ar~~ye~ 453 (697)
.+..+.|+..|+++|...-+..+ -.+|+..+...-.. .+++ ....++...|...|.+
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne-------~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE-------AFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH-------HHhccCHHHHHHHHHH
Confidence 36788899999999886544221 11233222210000 0000 0123567889999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (697)
Q Consensus 454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a 533 (697)
||..+|.++.++++-+-.+.+.|++..|.+=.+.++ ...|+....|.+-...+.... +.+++.+.|+++
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i-eL~p~~~kgy~RKg~al~~mk----------~ydkAleay~ea 452 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI-ELDPNFIKAYLRKGAALRAMK----------EYDKALEAYQEA 452 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 999999999999999999999999999999899999 789999999988765554443 357777889999
Q ss_pred HhhcChh
Q 005434 534 LTKVSAL 540 (697)
Q Consensus 534 l~~~p~~ 540 (697)
+..-|..
T Consensus 453 le~dp~~ 459 (539)
T KOG0548|consen 453 LELDPSN 459 (539)
T ss_pred HhcCchh
Confidence 8766543
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=8.2 Score=40.93 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhcCCC----HHH--------HHHHHHH---HHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGD----IEL--------WFKYMEF---CRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~----~~l--------W~~y~~~---~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~ 203 (697)
...+..-|+||+.-+..+ .+- -..|++. +.+.+ +..+....+++|...|++++.-+.-++-.+
T Consensus 224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l- 302 (397)
T KOG0543|consen 224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL- 302 (397)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-
Confidence 456667888888765522 110 1122222 12223 567888899999999999998888888876
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHH
Q 005434 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL 240 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~ 240 (697)
..|.++.||..|+++++..|.+..+=.+++++-...-
T Consensus 303 ~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 303 ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988888888765443
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=87.39 E-value=34 Score=34.34 Aligned_cols=151 Identities=7% Similarity=-0.012 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHH-HHHHHHHHH--Hhc----
Q 005434 442 HYISHLLTVYEKAEAMGCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-WLLRISVEI--RCV---- 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~---lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-W~~~i~l~~--~~~---- 511 (697)
++.+.|...|+..+...|.++- .....+..+.+.+++++|...+++.+ ..+|+++.+ +..|..-.. ..+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi-~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 5578899999999999887642 22334445667899999999999999 788886332 111111110 000
Q ss_pred ----ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHH
Q 005434 512 ----TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI 587 (697)
Q Consensus 512 ----~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y 587 (697)
.......+.+....+.+.|++-++..|.+...+.=..++..+ -++.. .. .. ..
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l----------~~~la----~~-----e~----~i 181 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL----------KDRLA----KY-----EL----SV 181 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHHH----HH-----HH----HH
Confidence 000000011123345578888888888654222111111111 11100 00 00 11
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCHH
Q 005434 588 INLVIQKDGIQQAREMYKRFLALPRPGLV 616 (697)
Q Consensus 588 l~~~~~~~~~~~AR~iy~~~i~~~p~~~~ 616 (697)
..+..+.|....|-.=++.++...|.+..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 34456678888888889999988776644
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.00 E-value=7.3 Score=36.73 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----c------CchHHHHHHHHHHhCCCCHH-HHHHHHHH---HH-
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQR-----K------NGRMKKVLAQVIRFHPKVPG-VWIYAAAW---EF- 202 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~-----~------~~~~~~~~~ral~~~p~~~~-lW~~~a~~---e~- 202 (697)
+.++++.-++....++|.|.+.+..+.--+... + .+.+..-|+.||.++|+... +|..-..+ -.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 466778899999999999999888887765432 1 24567889999999999754 55532221 10
Q ss_pred -----HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 203 -----DHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 203 -----~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
+....++.|...|++|+...|++ .++..-+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksL 120 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSL 120 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence 01134778889999999999986 3443333
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.51 E-value=3.8 Score=44.32 Aligned_cols=48 Identities=8% Similarity=-0.058 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~l---w~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
+..+.|...|++|++.+|.+.+. |...+..+...|++++|...+++|+
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788899999999988888754 8888888888899999999999988
No 204
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.43 E-value=8.3 Score=34.25 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=58.4
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHH---HHHHhc
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYY---STETKL 668 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~---~fE~~~ 668 (697)
+.|.++.|.+.|.++|..+|.....|..-++--.-++ +.+.|-+-.++|++.-+ ....-...|+ -+=+..
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~------~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG------DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC------ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4577888888888888888887777776665555555 66777777888887766 3333333333 345557
Q ss_pred CChhhHHHHHHHHHh
Q 005434 669 GTSETATAVYWRARK 683 (697)
Q Consensus 669 G~~~~a~~vy~ral~ 683 (697)
|+-+.|+.=|++|.+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 888888888877753
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.27 E-value=12 Score=33.92 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=56.1
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch-----HHHHH
Q 005434 592 IQKDGIQQAREMYKRFLALPRPG-----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-----LWRDY 661 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~-----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~-----lW~~y 661 (697)
.+.|++++|.+.|+......|.+ .++.+.|+.+. .+ +.+.|...|++-++.+|+++. .-...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~--~~------~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK--QG------DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH--cc------CHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 35677888888888877776654 34566666554 23 677888888888888885541 22223
Q ss_pred HHHHHh-------------cCChhhHHHHHHHHHhhcCCcc
Q 005434 662 YSTETK-------------LGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 662 ~~fE~~-------------~G~~~~a~~vy~ral~~~~~~~ 689 (697)
+.|+.. .+....|..-+++.++.+|++.
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 334432 2335567777777777777663
No 206
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=85.54 E-value=54 Score=34.84 Aligned_cols=286 Identities=13% Similarity=0.036 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhc
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIA 425 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~ 425 (697)
...+++.+.+..+ +.+.|.+-+..|-.--. ..++.+++-....++-+.-++..+ ..++...+-.+.
T Consensus 100 ~~qAEkl~~rnae-~~e~p~l~~l~aA~AA~------------qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarlll~ 165 (400)
T COG3071 100 FQQAEKLLRRNAE-HGEQPVLAYLLAAEAAQ------------QRGDEDRANRYLAEAAELAGDDTL-AVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhhh-cCcchHHHHHHHHHHHH------------hcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHHHh
Confidence 4556666655333 34445554443332211 146778888888887766444432 223333332221
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHH---
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL--- 502 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~--- 502 (697)
+++...|+.-...++...|..+.+-.--.+.+.+.|+..+...++.+.-++..-++++.=..
T Consensus 166 ---------------~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 166 ---------------RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred ---------------CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 34567889889999999999999998899999999999999888877764433333221110
Q ss_pred -HHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCC
Q 005434 503 -RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGG 577 (697)
Q Consensus 503 -~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~ 577 (697)
+.-+.-...+ .++.+.+ ....+.+|.+. ...|=..|+..+...+ +.+..+.+.+++..-
T Consensus 231 a~~glL~q~~~-------~~~~~gL----~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~----- 294 (400)
T COG3071 231 AWEGLLQQARD-------DNGSEGL----KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW----- 294 (400)
T ss_pred HHHHHHHHHhc-------cccchHH----HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-----
Confidence 1111111111 1122332 22333344321 3556667777776655 456666666664211
Q ss_pred CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434 578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL 657 (697)
Q Consensus 578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l 657 (697)
.+.+ ..++..+ .-++...--+.-++.++..|.+..++...-.|-.+.+ ...+|+..|+.|+..-+ +..-
T Consensus 295 --D~~L-~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~------~w~kA~~~leaAl~~~~-s~~~ 363 (400)
T COG3071 295 --DPRL-CRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK------LWGKASEALEAALKLRP-SASD 363 (400)
T ss_pred --ChhH-HHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh------HHHHHHHHHHHHHhcCC-Chhh
Confidence 1222 1222222 3466777777888888888888888888777777776 88999999999997654 4444
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 658 WRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 658 W~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
|..-+.--...|++..|.++++.|+..+-.
T Consensus 364 ~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 364 YAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 555566666799999999999999966543
No 207
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.14 E-value=2.3 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
+.+|...+.... ..|+++.|-..|+++|+..|+
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 467888888775 789999999999999999986
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=85.05 E-value=4.5 Score=36.82 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=36.2
Q ss_pred HHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 162 ~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
...++.+...| +..+..+..+++..+|.+..+|...+.... ..|+...|..+|++..+.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHH
Confidence 33344344444 456677777777777777777777777764 677777777777666443
No 209
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=77 Score=35.51 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHH-HHHhccCCCCCcccHHHHHHHHHHHHhhCC---C
Q 005434 584 PSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCI-ELENNLASVGDKDSLVNARKLFESALATYD---Q 653 (697)
Q Consensus 584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i-~lE~~~~~~~~~~~~~raR~lye~al~~~~---~ 653 (697)
...-+......|+.+.|-.++...+...-.+ .+-...+| .|-...+ +.+.+-+++..|+.... +
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~------~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK------DNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc------CCccHHHHHHHHHHHHHHhcc
Confidence 3344566677899999999999554321110 01112222 2333333 44567788888887554 1
Q ss_pred ----CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcccc
Q 005434 654 ----NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDSTAL 691 (697)
Q Consensus 654 ----~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~~f 691 (697)
...+|..-+.|+.++|+.+.|..+++..++..++.++.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 12789999999999999999999999999987766543
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.92 E-value=1.9 Score=27.64 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 465 w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
....+..+...|+.++|..++++.+ ..+|+|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~-~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI-KRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH-HHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-HHCcCC
Confidence 3445666677899999999999999 789975
No 211
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=81.70 E-value=2.9 Score=42.35 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (697)
++..++|..+|+.|+...|.++++.+.|..|.+.++++-+|.+.|-+|+ ..-|.+.+...
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL-tisP~nseALv 188 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL-TISPGNSEALV 188 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee-eeCCCchHHHh
Confidence 4678999999999999999999999999999999999999999999999 78887655443
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.19 E-value=3.1 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
.+|...+.... ..|+++.|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 57888888885 799999999999999998884
No 213
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.19 E-value=50 Score=33.09 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH-HHHHH
Q 005434 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP---GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVEY 232 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~---~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~-lW~~y 232 (697)
.+.|.+=+.-....| ...+.+-|+.....||..| +.=++.+.-.+ ..++.+.|+..++|-++.+|+|++ -|..|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 334433333334445 5789999999999999865 55555555555 689999999999999999999874 57777
Q ss_pred HHHHH
Q 005434 233 LRMEL 237 (697)
Q Consensus 233 ~~~E~ 237 (697)
++-..
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 76654
No 214
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.84 E-value=4.4 Score=26.25 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
+.+|..-+..+...|++++|...+++|+ ...|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRAL-ELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHH-HHCcC
Confidence 3578888899999999999999999999 67775
No 215
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.11 E-value=50 Score=38.37 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434 584 PSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~ 663 (697)
.-.|+.++...++++.|...|+++-.. ...++.. |-...+ .+ |+.++. ..++.+|.=|.+
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~h---afev~rm---L~e~p~------~~-------e~Yv~~-~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVH---AFEVFRM---LKEYPK------QI-------EQYVRR-KRDESLYSWWGQ 920 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCCh---HHHHHHH---HHhChH------HH-------HHHHHh-ccchHHHHHHHH
Confidence 344677777888999999999987431 0111110 100111 11 111111 145677777777
Q ss_pred HHHhcCChhhHHHHHHHHHhhc
Q 005434 664 TETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 664 fE~~~G~~~~a~~vy~ral~~~ 685 (697)
+-+..|+.+.|..+|+.|.-.+
T Consensus 921 YlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhh
Confidence 7777888888888887775443
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=77.61 E-value=12 Score=34.04 Aligned_cols=50 Identities=26% Similarity=0.277 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 636 ~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
+.+.+..+.++++...|.+..+|...+......|+...|..+|++..+.+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55566666666666666555666666666666666666666666655554
No 217
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.53 E-value=61 Score=31.24 Aligned_cols=91 Identities=21% Similarity=0.174 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~ 466 (697)
.|.++.|...|.+||..+|.-. --..|.+---..+ ..+..+.+..-..+||+.+|.......
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i---------------Kl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI---------------KLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH---------------HhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 4778999999999999998532 1111211111110 123345677777888999998888777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
.-+..+.+...+++|..=|.+.+ ...|..
T Consensus 173 RRAeayek~ek~eealeDyKki~-E~dPs~ 201 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKIL-ESDPSR 201 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH-HhCcch
Confidence 77888888888899988888887 666654
No 218
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.77 E-value=78 Score=30.96 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=31.8
Q ss_pred hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 005434 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (697)
Q Consensus 365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~ 424 (697)
+++.+++++++. .|.++.|...|+-|+....-.-+=-.|+-|+...+
T Consensus 238 EtyFYL~K~~l~-------------~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l 284 (297)
T COG4785 238 ETYFYLGKYYLS-------------LGDLDEATALFKLAVANNVYNFVEHRYALLELSLL 284 (297)
T ss_pred HHHHHHHHHHhc-------------cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 467889999875 58899999999999865332212234566665544
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.28 E-value=32 Score=38.30 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 005434 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~ 424 (697)
....++.++..+.+.||++.-.-...|+++.. .++++.|...|++++..-..-+-.....-|+....
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-------------~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERL-------------KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 35789999999999999875555556777754 58899999999999843221111122222333221
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH-HHHHHHHhcCCH-------HHHHHHHHHH
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH-RYVTLYLQLGKL-------DEARKLAAKL 488 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~-~y~~l~~~~~~~-------~~A~~l~~~a 488 (697)
. ....+.++|...|.+..+.+.=+..++. ..+-.+...|+. ++|.+++.++
T Consensus 315 ~-------------~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 315 H-------------MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred H-------------HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 1 0234567788888888776544444332 224556666666 5555555443
No 220
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.38 E-value=25 Score=33.80 Aligned_cols=89 Identities=13% Similarity=-0.033 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434 441 EHYISHLLTVYEKAEAMGCLTE-----DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~-----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~ 515 (697)
.+..+.|..-|..|+...|..+ -++..-+.-.++.+..+.|..-+.+|+ ..+|.......+++.+..+..
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~e---- 182 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKME---- 182 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhh----
Confidence 3567889999999999877653 256666777788888899998899999 788887777777777766553
Q ss_pred CCCCccchHHHHHHHHHHHhhcChh
Q 005434 516 FSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
.++.+.+-|.+.+...|..
T Consensus 183 ------k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 ------KYEEALEDYKKILESDPSR 201 (271)
T ss_pred ------hHHHHHHHHHHHHHhCcch
Confidence 2566666677776666543
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.98 E-value=30 Score=32.75 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 392 QMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 392 ~~~~a~~vye~al~~~~~~~----lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
-++.||+.++......|.+. -|-..+ .+...+.. ..+ ....++.+..-|+.|+..+|...+....
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~AL-LELAqfk~-g~e---------s~~miedAisK~eeAL~I~P~~hdAlw~ 74 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGAL-LELAQFKQ-GPE---------SKKMIEDAISKFEEALKINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH-HHHHHHS--HHH---------HHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHH-HHHHhccC-cch---------HHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 37889999999888888753 222211 11222211 001 2356789999999999999997554333
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHh
Q 005434 468 YVTLYLQL----GKLDEARKLAAKLC 489 (697)
Q Consensus 468 y~~l~~~~----~~~~~A~~l~~~al 489 (697)
+..-+... .+..+|...+++|.
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 33333322 33444555555544
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=74.71 E-value=6.9 Score=31.06 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCCc----HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSG--KLSDS----VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~--~~P~~----~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
...++...+..+...|++++|...+++++.- ..+++ ...+.....+....| +.+++.+.|++|+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG----------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence 3456778888999999999999999999841 23332 222222223333333 4777888888887
Q ss_pred h
Q 005434 535 T 535 (697)
Q Consensus 535 ~ 535 (697)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 5
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.66 E-value=5.4 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHhhhhCCCC
Q 005434 204 HNLNVTAARALMQNGLRVCPTS 225 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~ 225 (697)
..|+.+.|+.+|++.+...|+|
T Consensus 12 ~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HccCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999875
No 224
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=74.66 E-value=14 Score=38.45 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=49.4
Q ss_pred cCcHHHHHHHHHHHHhhCCCC---hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch--hHHHHHH
Q 005434 343 AQSDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS--MIFDLYT 417 (697)
Q Consensus 343 ~~~~~~~~~il~~~~~~~p~~---~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~--~lw~~yi 417 (697)
+...+.+..+|+.+++..|+. .+.|+++|+++-. .+.++.+..+|++||...... .|-...+
T Consensus 116 Gcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~-------------~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPR-------------TGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-------------cCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 334578888999999999977 4569999999864 467889999999999876443 3544444
Q ss_pred HHHH
Q 005434 418 KFLM 421 (697)
Q Consensus 418 ~~~~ 421 (697)
+++.
T Consensus 183 diL~ 186 (353)
T PF15297_consen 183 DILK 186 (353)
T ss_pred HHHH
Confidence 4443
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.13 E-value=5.5 Score=25.74 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P 494 (697)
.+|...+.++...|++++|.+.+++++ ...|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~-~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL-ELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC
Confidence 578889999999999999999999998 5555
No 226
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.15 E-value=3.2e+02 Score=36.27 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (697)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~ 222 (697)
.-.+.|+++++++++.| ...+.+.+-.|...- -|.+.+.-|++.| +.|+...|-.+++.++..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhh
Confidence 34678888888888877 467777666666554 5788888888888 7888888888888888555
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=73.15 E-value=4 Score=32.45 Aligned_cols=66 Identities=8% Similarity=-0.001 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHh---CCC-CH---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF---HPK-VP---GVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~---~p~-~~---~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
|+-...+..........| +.++...|++++.. .++ .+ ..+...+... ...|+.+.|...+++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECY-YRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Confidence 333445555566555656 57888889888865 333 22 3455556666 4789999999999999875
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=1.1e+02 Score=30.59 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 611 PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 611 ~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
.|..+..+...|.+..-.. +...+..+|..+.+..+
T Consensus 186 y~~~~k~~va~ilv~L~~~------Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAH------DYVQAEKCYRDCSQIPA 221 (308)
T ss_pred cccHHHHHHHHHHHHhhHH------HHHHHHHHhcchhcCcc
Confidence 3444555655555544433 77788888888777655
No 229
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.58 E-value=1.5e+02 Score=31.12 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhcCC----chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 393 MQKAIQVYEEALKNVP----SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 393 ~~~a~~vye~al~~~~----~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
++-|+...+..+..-. +..+|.+|..|-. ++.++|...|+.+...+-...++|...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhL--------------------gdY~~Al~~Y~~~~~~~~~~~el~vnL 97 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL--------------------GDYEEALNVYTFLMNKDDAPAELGVNL 97 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhh--------------------ccHHHHHHHHHHHhccCCCCcccchhH
Confidence 4456666655553211 2238888776632 457899999999887755567888887
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
+-..--.|.+.+|..+..+|- ..|-..++- ..+-.+.++ -.++ -.|...+.-... + .|=+.
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~--k~pL~~RLl---fhlahklnd----------Ek~~-~~fh~~LqD~~E-d--qLSLA 158 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAP--KTPLCIRLL---FHLAHKLND----------EKRI-LTFHSSLQDTLE-D--QLSLA 158 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCC--CChHHHHHH---HHHHHHhCc----------HHHH-HHHHHHHhhhHH-H--HHhHH
Confidence 766666788999988877654 233222222 122222221 1222 224444432221 1 11122
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH-HHHhCCHHHHHHHHHHHHhCCCCCH
Q 005434 549 ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINL-VIQKDGIQQAREMYKRFLALPRPGL 615 (697)
Q Consensus 549 y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~-~~~~~~~~~AR~iy~~~i~~~p~~~ 615 (697)
-+.|...+-+.+.++|++.+..-+.- .--..|+.. ..+..-++-+-++..-.+...|.++
T Consensus 159 svhYmR~HYQeAIdvYkrvL~dn~ey-------~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 159 SVHYMRMHYQEAIDVYKRVLQDNPEY-------IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhh-------hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 23444444456667777766422111 011223322 2344556666666666666666653
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.84 E-value=8.2 Score=23.34 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
..|...+.... ..++.+.|...|++++...|.
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 45666666665 678899999999999888775
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=68.29 E-value=2.8e+02 Score=33.66 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=146.9
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC----CCcH--
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDL-YTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG----CLTE-- 462 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~-yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~----~~~~-- 462 (697)
.++++.|...+++++...+...-+.. .......... ...+..+.++..+++++... ....
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-------------~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-------------HCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 46788999999999886554321111 1101111100 02356788888888887641 1112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc---c-CCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSG---K-LSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~---~-~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
......+..+...|++++|...+++++.. . .+.. ..++.....+....| +.+.+...+.+++.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G----------~~~~A~~~~~~al~ 601 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA----------RLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHhHH
Confidence 22344566778899999999999888731 1 1111 112222222233334 46788888888876
Q ss_pred hcCh---hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH-----HHHHHHHhCCHHHHHHHHH
Q 005434 536 KVSA---LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA-----IINLVIQKDGIQQAREMYK 605 (697)
Q Consensus 536 ~~p~---~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~-----yl~~~~~~~~~~~AR~iy~ 605 (697)
.... ......+..........+ +.+...++++........ ....+.. -+......|+.+.|.....
T Consensus 602 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 677 (903)
T PRK04841 602 VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR----YHSDWIANADKVRLIYWQMTGDKEAAANWLR 677 (903)
T ss_pred hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc----ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4321 111111111122222222 445566666654322110 0000111 1122334688999999987
Q ss_pred HHHhCCCCCHH----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC------CchHHHHHHHHHHhcCChhhHH
Q 005434 606 RFLALPRPGLV----LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ------NTSLWRDYYSTETKLGTSETAT 675 (697)
Q Consensus 606 ~~i~~~p~~~~----~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~------~~~lW~~y~~fE~~~G~~~~a~ 675 (697)
......+.... .+...+......+ +.++|..+|+.++..... .......+.......|+.+.|.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g------~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 678 QAPKPEFANNHFLQGQWRNIARAQILLG------QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred hcCCCCCccchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 76653222111 1334444555566 789999999999986431 1245667778888899999999
Q ss_pred HHHHHHHhhcCCc
Q 005434 676 AVYWRARKTLKDS 688 (697)
Q Consensus 676 ~vy~ral~~~~~~ 688 (697)
..+.+|+......
T Consensus 752 ~~L~~Al~la~~~ 764 (903)
T PRK04841 752 RVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999887543
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=68.12 E-value=1.4e+02 Score=30.04 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhcccCCCC
Q 005434 442 HYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ-LWLLRISVEIRCVTRNSFS 517 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~-lW~~~i~l~~~~~~~~~~~ 517 (697)
++.+.|...|+......|.+ +..-+..+.-..+.++++.|....++-+ +.+|++.. =|..|+.............
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi-~lyP~~~n~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI-RLYPTHPNADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCCCCChhHHHHHHHHHHhccCCccc
Confidence 56788888888888776664 4555555555668899999999999999 78998643 3555665554332211111
Q ss_pred CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCH
Q 005434 518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (697)
Q Consensus 518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~ 597 (697)
.+......+..-|..-|...|++.-.+-=...+.++. .++ ... -.....|..+.|..
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~-----------d~L---A~~---------Em~IaryY~kr~~~ 183 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN-----------DAL---AGH---------EMAIARYYLKRGAY 183 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH-----------HHH---HHH---------HHHHHHHHHHhcCh
Confidence 1222344556668888888887641111011111110 000 000 01124455666777
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 598 ~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
..|-.=++..++..|...........+++..... .+..-++-....+..+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~l----gl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYAL----GLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHh----CChHHHHHHHHHHHhcC
Confidence 7777777778877655544333333333222211 23344444455566554
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=65.04 E-value=1.2e+02 Score=33.61 Aligned_cols=44 Identities=14% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 177 KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 177 ~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
.++=.+||..+|+++..|+..|. |....+..|..+|.+|++...
T Consensus 188 IkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE 231 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGE 231 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHH
Confidence 45667799999999999999887 345689999999999998764
No 234
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=64.64 E-value=16 Score=25.35 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434 450 VYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (697)
Q Consensus 450 ~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~ 482 (697)
.|.+||-.+|.+...++-|++.+..+|+..+|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 467788889999999999999999999987664
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.78 E-value=47 Score=32.91 Aligned_cols=90 Identities=9% Similarity=0.136 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
+..-|-||+...|.....|..-+.--.+.+ .+.+..-..||+++.|+....-.....+.+ ...+++.|-..++|+...
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHHHHHHH
Confidence 446899999999999999988777555554 567788888999999998776666666665 567899999999999443
Q ss_pred C---C--CCHHHHHHHH
Q 005434 222 C---P--TSEELWVEYL 233 (697)
Q Consensus 222 ~---p--~~~~lW~~y~ 233 (697)
. | ....+|....
T Consensus 108 ~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 108 LREQPFTFGDDIPKALR 124 (284)
T ss_pred HhcCCCCCcchHHHHHH
Confidence 3 2 2346776654
No 236
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=63.68 E-value=1.4e+02 Score=28.57 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=85.5
Q ss_pred hhhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCC--ChhhHHHHHHhhcccCCCCC
Q 005434 306 EQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLKMTDSVSKD 382 (697)
Q Consensus 306 ~~~~~~a~~iy~~al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~--~~~~w~~~a~~~l~~~~~~~ 382 (697)
.+....|+..|++++.-+ -++..+...+... .|.. +....+...++++.+.+|. +|.....+++-.--
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~A--qfa~-~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa------ 172 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA--QFAI-QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA------ 172 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHH--HHhh-ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh------
Confidence 345788999999998754 3344444444332 2332 1356788889999998884 47777788887643
Q ss_pred CCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc
Q 005434 383 GTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (697)
Q Consensus 383 ~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~ 461 (697)
.+....|+.-|+.++...|...--..|..|+.++... ...-.+.+.+++++....|..
T Consensus 173 -------~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~--------------~ea~aq~~~v~d~~~r~~~H~ 230 (251)
T COG4700 173 -------QGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRL--------------REANAQYVAVVDTAKRSRPHY 230 (251)
T ss_pred -------cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcch--------------hHHHHHHHHHHHHHHhcchhH
Confidence 4778889999999999999877556788877664310 122346777888877765553
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.04 E-value=14 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 465 AHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 465 w~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
|...+.++.+.|++++|..++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677899999999999999999966
No 238
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.70 E-value=13 Score=22.36 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
..|...+..+...|+++.|...+.+++ ...|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~-~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL-ELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH-ccCCC
Confidence 467778888889999999999999998 55554
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.14 E-value=2.1e+02 Score=29.97 Aligned_cols=126 Identities=11% Similarity=0.017 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCC--
Q 005434 540 LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPG-- 614 (697)
Q Consensus 540 ~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~-- 614 (697)
.+....|..++......+ +.+...+.++....... ....+.+...++.++...|+-..|....+..+.. ....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~--~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS--ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc--cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 345678988887766655 45555555544321111 1114566677888888899999999988888871 1100
Q ss_pred -------------------------------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434 615 -------------------------------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 615 -------------------------------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~ 663 (697)
...+...+.+-..+...-...+.+.+.+.|..|++.++.....|..|+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 1233444443333300001237899999999999999977789999998
Q ss_pred HHHh
Q 005434 664 TETK 667 (697)
Q Consensus 664 fE~~ 667 (697)
+...
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 8666
No 240
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=62.01 E-value=1.5e+02 Score=28.36 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHH
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL 545 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~l 545 (697)
...+.-+.+.|++.+|+..|+++++..+-++..+-....+-....+. ...+-.++++....-|...+..-
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~----------~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE----------FAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc----------HHHHHHHHHHHhhcCCccCCCCc
Confidence 34455667789999999999999977888877766655544333332 33333334443332221111110
Q ss_pred HHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 546 WLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 546 W~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
-+.|..-+...+ ..++..|+.++...+ .+.-...|.+|+...|...+++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-------g~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-------GPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhcchhHHH
Confidence 111222222222 456666776664321 2333455777776666444433
No 241
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=61.28 E-value=2.3e+02 Score=32.18 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCCh-----hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHh
Q 005434 330 RQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP-----KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEAL 404 (697)
Q Consensus 330 ~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~-----~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al 404 (697)
|..++......+.....+.+..+....-..+|.+| ..|..+.++.-..... .+......-++++.|....++..
T Consensus 258 id~~lk~~~~~~f~~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s-~p~vlLl~~~~l~eal~~~e~~c 336 (547)
T PF14929_consen 258 IDEFLKSVEMLEFYQPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQS-NPPVLLLIGGRLKEALNELEKFC 336 (547)
T ss_pred cchHhhhhhcccCCCcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcC-CCCeEEeccccHHHHHHHHHHhc
Confidence 44555443333333345667777766668888887 7777766665321000 00000111256666666666654
Q ss_pred hcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484 (697)
Q Consensus 405 ~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l 484 (697)
...+.......=+.+.+. +. ++........|++++..+|.....-...+.+... ...+.++
T Consensus 337 ~~~~~~lpi~~~~~lle~-~d---------------~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~L 397 (547)
T PF14929_consen 337 ISSTCALPIRLRAHLLEY-FD---------------QNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQL 397 (547)
T ss_pred cCCCccchHHHHHHHHHH-hC---------------cccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHH
Confidence 443333222322333222 21 1346678899999999999864444333333322 3334445
Q ss_pred HHH---HhhccCCCcHHHHHHHHHHHHHh
Q 005434 485 AAK---LCSGKLSDSVQLWLLRISVEIRC 510 (697)
Q Consensus 485 ~~~---al~~~~P~~~~lW~~~i~l~~~~ 510 (697)
++. -+ ... .+..+|..++...++.
T Consensus 398 le~i~~~l-~~~-~s~~iwle~~~~~l~~ 424 (547)
T PF14929_consen 398 LEMIALHL-DLV-PSHPIWLEFVSCFLKN 424 (547)
T ss_pred HHHHHHHh-hcC-CCchHHHHHHHHHHhc
Confidence 542 23 344 5689999999998874
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=58.87 E-value=1.5e+02 Score=27.38 Aligned_cols=87 Identities=20% Similarity=0.065 Sum_probs=43.6
Q ss_pred HhCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHH-HHHHHHHHhcCC
Q 005434 593 QKDGIQQAREMYKRFLALPRP-GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLW-RDYYSTETKLGT 670 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~-~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW-~~y~~fE~~~G~ 670 (697)
..+..+.+...+.+++...+. ....+..........+ ....+...+..++...+.....+ .....+. ..|.
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG------KYEEALEYYEKALELDPDNAEALYNLALLLL-ELGR 251 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc------cHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCC
Confidence 345666666666666666555 3333333333333333 45666666666666555422222 2222222 4555
Q ss_pred hhhHHHHHHHHHhhcC
Q 005434 671 SETATAVYWRARKTLK 686 (697)
Q Consensus 671 ~~~a~~vy~ral~~~~ 686 (697)
.+.+...+.+++...+
T Consensus 252 ~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 252 YEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 6666666666655443
No 243
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=58.30 E-value=26 Score=24.35 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHH
Q 005434 642 KLFESALATYDQNTSLWRDYYSTETKLGTSETAT 675 (697)
Q Consensus 642 ~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~ 675 (697)
.-|..|+...|.+...++-|+++...+|++.++.
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 3577888888888999999999999999997653
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=57.45 E-value=3.1e+02 Score=30.47 Aligned_cols=97 Identities=7% Similarity=0.065 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcc-CC---CC--
Q 005434 560 FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNL-AS---VG-- 632 (697)
Q Consensus 560 ~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i~lE~~~-~~---~~-- 632 (697)
+-+.|...++..+.. ....+....++++...+.+..+..+..+.=.. .|.+..++-.-+.|.... ++ ++
T Consensus 278 AIk~~rdLlke~p~~----~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a 353 (539)
T PF04184_consen 278 AIKMFRDLLKEFPNL----DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAA 353 (539)
T ss_pred HHHHHHHHHhhCCcc----chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhh
Confidence 444555554433211 13456667789999999999999999987543 344444333334333221 10 00
Q ss_pred ----CcccHHHHHHHHHHHHhhCCCCchHHHH
Q 005434 633 ----DKDSLVNARKLFESALATYDQNTSLWRD 660 (697)
Q Consensus 633 ----~~~~~~raR~lye~al~~~~~~~~lW~~ 660 (697)
-.+....|.+...+|++.+|..+++-+.
T Consensus 354 ~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 354 SRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred hhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 0112345778899999999876655443
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.90 E-value=2.3e+02 Score=28.79 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (697)
.+..|.-+|+..-.+.|.++.+-..-+-..+..|++++|..+++.|+ ...|+.++.-...+-+-...|.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL-~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL-DKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHhCC
Confidence 36788999999888777788888888889999999999999999999 6778877777766666666664
No 246
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=56.75 E-value=1.8e+02 Score=35.28 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=79.1
Q ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHH------
Q 005434 78 RRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV------ 151 (697)
Q Consensus 78 R~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral------ 151 (697)
|-.+|.+.-....-+..|.+||+|=.... . . + + . ...-.+.+.+|++
T Consensus 20 ~li~el~~~~~~DPl~~w~ryi~wv~~~~------~------~-----~----~---~---~~~~l~~~lerc~~~~~~l 72 (974)
T KOG1166|consen 20 RLIYELESYAGNDPLDKWLRYIEWVLEVY------P------E-----G----K---E---NQSLLRNLLERCLEELEDL 72 (974)
T ss_pred HHHHHHHhhcCCCchhhhHhHhhhhhhcc------c------c-----C----C---c---hhhhHHHHHHHHHHhccch
Confidence 44455554477777899999999853221 0 0 0 0 0 1223334555555
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC-HHH
Q 005434 152 MRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-EEL 228 (697)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~-~~l 228 (697)
++++++..+-..|+-+....-...+..+|.-+-.. -+....++..|+... +..+.+..|+.+|+.|++....- ..+
T Consensus 73 k~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~l-E~k~~~keA~~v~q~Giq~~aeP~~rL 151 (974)
T KOG1166|consen 73 KRYRNDPRFLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHL-ERKEYFKEAKEVFQLGIQNKAEPLERL 151 (974)
T ss_pred hhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 44555655222222211111133556666666542 334567788888877 58888999999999999887542 366
Q ss_pred HHHHHHHHHHHH
Q 005434 229 WVEYLRMELTYL 240 (697)
Q Consensus 229 W~~y~~~E~~~~ 240 (697)
=..|..|..+.+
T Consensus 152 ~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 152 LRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHHHHHHh
Confidence 677777765544
No 247
>PRK04841 transcriptional regulator MalT; Provisional
Probab=55.20 E-value=4.6e+02 Score=31.79 Aligned_cols=202 Identities=13% Similarity=-0.019 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-----cHHHH--HHHH--HHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD-----SVQLW--LLRI--SVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~-----~~~lW--~~~i--~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+-...+.+....|++++|...+..+. ...+. ...+. ...+ .+....+ +.+.+...+++++
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~al 479 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAE-QELKDRNIELDGTLQAEFNALRAQVAINDG----------DPEEAERLAELAL 479 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHH-HhccccCcccchhHHHHHHHHHHHHHHhCC----------CHHHHHHHHHHHH
Confidence 33444555567889999998888776 32221 11111 1111 1111122 4788888899988
Q ss_pred hhcChhhh-HH--HHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHH
Q 005434 535 TKVSALES-ES--LWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKR 606 (697)
Q Consensus 535 ~~~p~~~~-~~--lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~ 606 (697)
...+.... .. .+..........+ +.+...+++++........ ....... ........|+++.|+..+++
T Consensus 480 ~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 480 AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 75443221 01 1111111111222 4566677777754432110 1111111 12224567999999999999
Q ss_pred HHhCCCC--------CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--C---chHHHHHHHHHHhcCChhh
Q 005434 607 FLALPRP--------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--N---TSLWRDYYSTETKLGTSET 673 (697)
Q Consensus 607 ~i~~~p~--------~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~---~~lW~~y~~fE~~~G~~~~ 673 (697)
++..... ....+...+.+....| +.+.|+..++.++..... . ...+..........|+.+.
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA------RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhc------CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 9874211 1112233344555567 889999999999876441 1 2334445556777899999
Q ss_pred HHHHHHHHHhhc
Q 005434 674 ATAVYWRARKTL 685 (697)
Q Consensus 674 a~~vy~ral~~~ 685 (697)
|...+.++....
T Consensus 631 A~~~l~~a~~~~ 642 (903)
T PRK04841 631 ARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=53.19 E-value=1.4e+02 Score=31.23 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=44.8
Q ss_pred cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005434 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP----KVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220 (697)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p----~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~ 220 (697)
.......|+.++..+++.| ...+...+.++....+ ..|.+=+.+|++.+ ..|+...|-..+...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 3445677888888888777 3556677777766442 14667777788777 56777777777776665
No 249
>PRK10941 hypothetical protein; Provisional
Probab=50.26 E-value=48 Score=33.83 Aligned_cols=54 Identities=11% Similarity=-0.001 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~ 227 (697)
+.++.++.+++|...|++|.-|-.-+-... +.|....|+.=++..+..||+.+.
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchh
Confidence 568899999999999999999987777774 899999999999999999998764
No 250
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.36 E-value=67 Score=26.61 Aligned_cols=46 Identities=22% Similarity=0.112 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434 449 TVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 449 ~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
..++.++..+|.+.+.....+..+...|++++|.+.+-..+ +..|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v-~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV-RRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-CC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcc
Confidence 45677888899999999999999999999999999988888 55554
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=47.59 E-value=2.1e+02 Score=25.71 Aligned_cols=85 Identities=9% Similarity=-0.101 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCC
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSP 518 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~ 518 (697)
+.++.+.+.|.+|+...|..++.+..-++-+.-.|+.++|..=+.+|+.-..|.. -.-+..+..+.-..|.
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~------ 130 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN------ 130 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc------
Confidence 5688999999999999999999999999999999999999999999884334442 2344444444433442
Q ss_pred CccchHHHHHHHHHHHhh
Q 005434 519 SKADILSIFELLKCILTK 536 (697)
Q Consensus 519 ~~~~~~~~~~~f~~al~~ 536 (697)
-+.+|.-|+.|-..
T Consensus 131 ----dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 ----DDAARADFEAAAQL 144 (175)
T ss_pred ----hHHHHHhHHHHHHh
Confidence 46777778887553
No 252
>PF13041 PPR_2: PPR repeat family
Probab=47.49 E-value=87 Score=22.19 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (697)
-.|-..+..+.+.|++++|.+++++..+..++.+...+..-|
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 356777888889999999999999988666666666665444
No 253
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=1.5e+02 Score=29.59 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (697)
+.+..|..-|.+||..+|+.+.-|..-+..+++.++++.+..-..+|+ +-.|+++.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral-ql~~N~vk 79 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL-QLDPNLVK 79 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-hcChHHHH
Confidence 456667889999999999999999999988888889988888888999 78888754
No 254
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=45.45 E-value=2.3e+02 Score=34.50 Aligned_cols=124 Identities=11% Similarity=0.179 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCC--
Q 005434 541 ESESLWLMALKFFMNQ-------KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP-- 611 (697)
Q Consensus 541 ~~~~lW~~y~~~~~~~-------~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~-- 611 (697)
+-...|..|+.+.... ...++.+.++++............+.+...|+- +........++++|..+-...
T Consensus 32 DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg 110 (974)
T KOG1166|consen 32 DPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIG 110 (974)
T ss_pred CchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhcccc
Confidence 3355677777665421 123455566665544322211112222222322 234456788888888887642
Q ss_pred CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHhcCCh
Q 005434 612 RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKLGTS 671 (697)
Q Consensus 612 p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~~~G~~ 671 (697)
+....+|..|+.+....+ ...+|+++|..+++... ....+=..|..|..+.|.-
T Consensus 111 ~~lalfYe~~a~~lE~k~------~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 111 TTLALFYEAYAKHLERKE------YFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred chhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 222457788877666665 78999999999988765 3347777888888776543
No 255
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.19 E-value=75 Score=26.32 Aligned_cols=48 Identities=10% Similarity=-0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434 177 KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (697)
Q Consensus 177 ~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~ 225 (697)
...++..+..+|+++...+..|...+ ..|+++.|-..+...++..|+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 35678889999999999999999887 7899999999999999998863
No 256
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.10 E-value=56 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCHH
Q 005434 204 HNLNVTAARALMQNGLRVCPTSEE 227 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~~~ 227 (697)
..|+.+.||...++.|+..|++.+
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHH
Confidence 689999999999999999998754
No 257
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.38 E-value=37 Score=35.25 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVL 617 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~ 617 (697)
...|.+++|...|.++|...|.+..+
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~ 133 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVY 133 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccc
Confidence 35678889999999999888866543
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.99 E-value=3.5e+02 Score=26.65 Aligned_cols=53 Identities=11% Similarity=-0.020 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
...-||.-|.+++..+|.-++++.-..-.+...|+++.|.+.+...+ .-.|..
T Consensus 80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~-ELDp~y 132 (297)
T COG4785 80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTY 132 (297)
T ss_pred HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh-ccCCcc
Confidence 34567888899999999999998877777888999999999999888 677764
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.78 E-value=2.3e+02 Score=28.41 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHc--------CCCcH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAM--------GCLTE----------DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~--------~~~~~----------~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (697)
+....|...|..|+.. .|.++ .+.++|.+.++..|++-++.+-....+ ...|.+++.+..+
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL-~~~~~nvKA~frR 270 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL-RHHPGNVKAYFRR 270 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH-hcCCchHHHHHHH
Confidence 4456666667666542 45543 477889999999999999999998999 7999999988888
Q ss_pred HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 504 i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
..-.... + +..++..-|.++|..-|.
T Consensus 271 akAhaa~--W--------n~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 271 AKAHAAV--W--------NEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhh--c--------CHHHHHHHHHHHHhcChh
Confidence 7654322 1 246666678888875543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=41.01 E-value=3.8e+02 Score=29.84 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcH----HHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----DIA 465 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~----~lw 465 (697)
....+.|..+.+...+..|++.+|..+..-... ..++++.|...|++|+.....-+ -.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-----------------~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-----------------LKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------HhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 356788999999999999999888766544332 25678999999999885422211 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (697)
...+-.+.-..+.++|...+.+.+ ....+|.-
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~-~~s~WSka 340 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLL-KESKWSKA 340 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHH-hccccHHH
Confidence 233333455678999999999888 55555533
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=40.90 E-value=4.9e+02 Score=27.97 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccccCcHHHHHHHHHH-HHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc
Q 005434 328 NLRQRFFEIVEATNLAQSDDMHDKILSD-MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN 406 (697)
Q Consensus 328 ~~~~~~~~~~~~fe~~~~~~~~~~il~~-~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~ 406 (697)
.+...|.-.+.+-+..+..+.+..++.. +....+.+++++..+++.+-.. ...... .....+++|...|.+|.+.
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-~~~s~~---~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL-FLESNF---TDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHHcCc---cchHHHHHHHHHHHHHHcC
Confidence 3333333344342223345788888887 6666777899999999887431 100000 1134589999999999987
Q ss_pred CCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHH-cCCC--cHHHHHH--HHHHHHhcCCHHHH
Q 005434 407 VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA-MGCL--TEDIAHR--YVTLYLQLGKLDEA 481 (697)
Q Consensus 407 ~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~-~~~~--~~~lw~~--y~~l~~~~~~~~~A 481 (697)
-++---=..++.++.-.. .+. .....+.+....+...+. ++.. ..+-|.- +++...-.|+++.|
T Consensus 256 ~~~~Y~GIN~AtLL~~~g----~~~-------~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka 324 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAG----HDF-------ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKA 324 (374)
T ss_pred CccccchHHHHHHHHHcC----Ccc-------cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHH
Confidence 764210012333322111 110 011223333333333222 2211 2344432 33444457999999
Q ss_pred HHHHHHHhhccCCC
Q 005434 482 RKLAAKLCSGKLSD 495 (697)
Q Consensus 482 ~~l~~~al~~~~P~ 495 (697)
.+.++++. +..|+
T Consensus 325 ~~a~e~~~-~l~~~ 337 (374)
T PF13281_consen 325 IQAAEKAF-KLKPP 337 (374)
T ss_pred HHHHHHHh-hcCCc
Confidence 99999999 55554
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.77 E-value=48 Score=21.82 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434 658 WRDYYSTETKLGTSETATAVYWRARKT 684 (697)
Q Consensus 658 W~~y~~fE~~~G~~~~a~~vy~ral~~ 684 (697)
|......-...|+.++|..+|++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777899999999999997743
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=39.36 E-value=3.4e+02 Score=25.66 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=60.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~ 663 (697)
..++..+.|+++.|.+.|.++...+... ..++...|.+-...+ +...+....++|-.......+ |..-..
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~------d~~~v~~~i~ka~~~~~~~~d-~~~~nr 114 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG------DWSHVEKYIEKAESLIEKGGD-WERRNR 114 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHhccch-HHHHHH
Confidence 4566778999999999999999876443 346777777766666 778888888887766443111 544443
Q ss_pred HHHh-------cCChhhHHHHHHHHHhhcC
Q 005434 664 TETK-------LGTSETATAVYWRARKTLK 686 (697)
Q Consensus 664 fE~~-------~G~~~~a~~vy~ral~~~~ 686 (697)
+-.- .|+...|-..+--+..++.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 3322 4556666665555554443
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=39.29 E-value=5.2e+02 Score=27.79 Aligned_cols=164 Identities=11% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhccCCCcHHHHHHHHH----HHHHhcc
Q 005434 444 ISHLLTVYEKAEAM----GCLTEDIAHRYVTLYLQ---LGKLDEARKLAAKLCSGKLSDSVQLWLLRIS----VEIRCVT 512 (697)
Q Consensus 444 ~~~ar~~ye~al~~----~~~~~~lw~~y~~l~~~---~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~----l~~~~~~ 512 (697)
.+....+.+..-.. -+.++.+=..|+--+-+ .|+.++|+.++..++....+.+.+++-.... ++...+.
T Consensus 157 ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~ 236 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNF 236 (374)
T ss_pred HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCc
Confidence 44555555544332 12356677788888888 8999999999988664455556666654333 3333221
Q ss_pred cCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCCChHH-
Q 005434 513 RNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPS- 585 (697)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~------~~~~~l~~~a~~~~~~~~~~~~~~~l~~- 585 (697)
. +....+++.+.|.+|...-|..-+ -|= ++-.+...+ ..++++--+.......+...+.....|.
T Consensus 237 ~-----d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN--~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ 308 (374)
T PF13281_consen 237 T-----DRESLDKAIEWYRKGFEIEPDYYS-GIN--AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDV 308 (374)
T ss_pred c-----chHHHHHHHHHHHHHHcCCccccc-hHH--HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHH
Confidence 0 112367788889998875432111 110 111122222 1233332111111111211122334443
Q ss_pred -HHHHHHHHhCCHHHHHHHHHHHHhCCCCCH
Q 005434 586 -AIINLVIQKDGIQQAREMYKRFLALPRPGL 615 (697)
Q Consensus 586 -~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~ 615 (697)
.+++-..-.|+.++|.+.+++++...|+..
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 244545567999999999999999877653
No 265
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.99 E-value=30 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhhHhHHH---HHHhCCCCHHHH
Q 005434 42 MADVVQYRLERMVDELDD---LERRGLFTRHEI 71 (697)
Q Consensus 42 ma~~v~~~le~~~~e~~~---~~~~~~f~~~Ei 71 (697)
|+..=+.+|..||-|+.. +...|+|.+++.
T Consensus 1 m~~~n~Enl~fmi~eI~~KLnmvN~gvl~~e~~ 33 (71)
T COG4840 1 MAMPNEENLDFMIEEIREKLNMVNVGVLDPEKY 33 (71)
T ss_pred CCCcchhhHHHHHHHHHHHHhhhhhhccCHHhc
Confidence 455567788889988875 788999988654
No 266
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.38 E-value=1.1e+02 Score=32.09 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~ 650 (697)
++..+.+.---++++.++..+|...|... ++|+..+.||...+ .++.+-.|||.|+..
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~------~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG------PIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC------CHHHHHHHHHHHHHc
Confidence 44444333456789999999999888653 48888889998887 778999999999965
No 267
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.09 E-value=2.6e+02 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (697)
..++......++.+...| ++.++..|+..+...|+.++|+.+..++. .-+|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~-~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARAR-RLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCc
Confidence 445666677777776655 68899999999999999999999999999 78893
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.58 E-value=36 Score=33.46 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434 174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (697)
Q Consensus 174 ~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~ 225 (697)
..+-.+|.++|..-|+...-|.....+. +..|.++.|-..+...|+..|..
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccc
Confidence 4678899999999999999999999999 68999999999999999999964
No 269
>PF13041 PPR_2: PPR repeat family
Probab=37.19 E-value=1.3e+02 Score=21.23 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHH
Q 005434 584 PSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCI 622 (697)
Q Consensus 584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i 622 (697)
+...+....+.|.+++|.++|++..+. .+|+...|...+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455667777889999999999999875 455555554443
No 270
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.80 E-value=4.8e+02 Score=26.09 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCC-H-----H-HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPG-L-----V-LYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~-~-----~-~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
.+.+..+.+.+.+|-+||++.....-.+ . + .+.+.. |-.-. +.+.-.++...|+..+..|
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg-LChl~-----~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG-LCHLC-----KADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH-HHhHh-----cccHHHHHHHHHHHHhcCC
Confidence 3556667889999999999987643222 1 1 111111 11111 1156667777777777777
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=2.4e+02 Score=28.25 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHH-HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc-----CCCcHH
Q 005434 391 SQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD-MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GCLTED 463 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~-----~~~~~~ 463 (697)
+.+++|...+.+|++.-...+ +|.+--..+.. .+.. ....+..+..+|++|... .|.+..
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-------------e~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-------------ELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 446777777777776544444 44432222221 1110 012344555666666442 233344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
+-+.-+--.+.+.+++.|.++|.+++
T Consensus 112 maleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 44444444445556666666666665
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=31.73 E-value=1.2e+02 Score=28.65 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQ---NTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~---~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+...+++..+.| +.+.|.+.|.++...+.+ ..++++..+..=...||...+.....+|-..+..
T Consensus 39 ~~~l~~~~~~~G------d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 39 LEDLADHYCKIG------DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHhh------hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 334455666777 899999999999988762 2499999999999999999999999999777654
No 273
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=3.3e+02 Score=31.94 Aligned_cols=91 Identities=19% Similarity=0.073 Sum_probs=45.8
Q ss_pred ccccCCCcccccccccccccccccchHHHHHHHHHhhh-HhHHHHHHhCCCCHHHHHHHHHhhHHHHHHHhCCCCChHHH
Q 005434 17 RCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMV-DELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDY 95 (697)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~ma~~v~~~le~~~-~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l~r~~~~~~~~ 95 (697)
|||+--+.---+..+-+-|+.-+.+-++.=|...|+.. -.+..+....+ +.=++ -+-| -||..|.--+.+...|
T Consensus 692 ~~~~~~amd~L~~l~i~eFe~~a~k~s~~~~~~y~~ycqiq~~~~~~S~l-~f~~~---~k~r-F~e~~v~~fsrn~~~~ 766 (913)
T KOG1972|consen 692 RGHQELAMDLLQALVIQEFESFAPKLSLTEQSLYRSYCQIQIKHFWASNL-AFYNL---PKVR-FFEEGVTLFSRNAFGW 766 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCchhHHHHHHHHHHHHHHHHhhhh-hcccc---ccee-eeccchhhccccchhH
Confidence 56665555555555555555555555555555555554 11111111100 00000 0112 4444455566677889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005434 96 LAYIEYESQLDALRRLR 112 (697)
Q Consensus 96 ~~Yi~~E~~~~~l~~~R 112 (697)
..||..|..+..-.++|
T Consensus 767 e~wa~l~s~l~qk~r~r 783 (913)
T KOG1972|consen 767 ELWAELESELRQKIRKR 783 (913)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999987665444444
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.67 E-value=31 Score=35.90 Aligned_cols=82 Identities=15% Similarity=0.006 Sum_probs=41.1
Q ss_pred hCCHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHhcCC
Q 005434 594 KDGIQQAREMYKRFLALPRPGLV--LYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKLGT 670 (697)
Q Consensus 594 ~~~~~~AR~iy~~~i~~~p~~~~--~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~~~G~ 670 (697)
.+.-.+|..=|..+|+++|.+.+ -|..++ +..++ +.+.++..++.+++..- ...+-|+. .-+-+.|-
T Consensus 161 l~kp~~airD~d~A~ein~Dsa~~ykfrg~A--~rllg------~~e~aa~dl~~a~kld~dE~~~a~lK--eV~p~a~k 230 (377)
T KOG1308|consen 161 LKKPNAAIRDCDFAIEINPDSAKGYKFRGYA--ERLLG------NWEEAAHDLALACKLDYDEANSATLK--EVFPNAGK 230 (377)
T ss_pred ccCCchhhhhhhhhhccCcccccccchhhHH--HHHhh------chHHHHHHHHHHHhccccHHHHHHHH--Hhccchhh
Confidence 34445555556666666555543 344444 22333 56667777777776543 22345542 22333344
Q ss_pred hhhHHHHHHHHHhhc
Q 005434 671 SETATAVYWRARKTL 685 (697)
Q Consensus 671 ~~~a~~vy~ral~~~ 685 (697)
.+.-+..|+|+...-
T Consensus 231 i~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 231 IEEHRRKYERAREER 245 (377)
T ss_pred hhhchhHHHHHHHHh
Confidence 444455556555443
No 275
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=4.6e+02 Score=30.88 Aligned_cols=41 Identities=10% Similarity=-0.079 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005434 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCI 622 (697)
Q Consensus 582 ~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i 622 (697)
.+|..|+..+...++.+..-.+|.+|+..||-...+++.+|
T Consensus 837 ~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l~md~i 877 (913)
T KOG1972|consen 837 SKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWLEMDVI 877 (913)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHHHHHHH
Confidence 45555655555555566666666666666554444444444
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=28.33 E-value=2.1e+02 Score=29.33 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
...+...+++.+..+|.+..+|...+...+ ..|+...|...|.+.=+.
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 356778889999999999999999988886 889999998888776553
No 277
>PF12854 PPR_1: PPR repeat
Probab=27.25 E-value=1.5e+02 Score=19.24 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAK 487 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~ 487 (697)
+.-.|...+.-+-+.|+.++|.+++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445677788889999999999999875
No 278
>PRK10941 hypothetical protein; Provisional
Probab=26.36 E-value=5.6e+02 Score=26.14 Aligned_cols=57 Identities=11% Similarity=-0.087 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (697)
+..++|..+-++.+...|.++.-|.+-+-++.+.|.+..|+.=++.-+ ..+|+.+..
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl-~~~P~dp~a 251 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV-EQCPEDPIS 251 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HhCCCchhH
Confidence 557899999999999999999999999999999999999999899888 789986544
No 279
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=26.17 E-value=1.9e+02 Score=27.57 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 176 MKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 176 ~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
.....++.+...|+ |.+...++.... .+|+.++|+..++++....|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 45667778888886 888888888885 89999999999999999999
No 280
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=26.13 E-value=90 Score=18.84 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 005434 465 AHRYVTLYLQLGKLDEARKLAA 486 (697)
Q Consensus 465 w~~y~~l~~~~~~~~~A~~l~~ 486 (697)
....+..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456778889999999998875
No 281
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=26.04 E-value=1.5e+02 Score=22.72 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=25.5
Q ss_pred HHHHhhhHhHHHHHHhCCCCHHHHHH---HHHhhHHHH
Q 005434 48 YRLERMVDELDDLERRGLFTRHEISE---IVKQRRKFE 82 (697)
Q Consensus 48 ~~le~~~~e~~~~~~~~~f~~~Ei~~---i~~kR~~fE 82 (697)
.-+|=|--|+.+|-+.|++++++-.. |++++...|
T Consensus 25 ~DielM~~El~~Ly~~~lidk~~y~~A~liL~~E~~~E 62 (62)
T PF06014_consen 25 WDIELMEIELKELYKSGLIDKKEYLTAKLILRREHRIE 62 (62)
T ss_dssp HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 34788899999999999999988743 556655443
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.62 E-value=3.9e+02 Score=28.10 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHhhcCCch
Q 005434 390 PSQMQKAIQVYEEALKNVPSS 410 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~ 410 (697)
.+.++.|++.|.+|+...|..
T Consensus 110 QgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred ccchhHHHHHhhhhhccCCCC
Confidence 478999999999999988743
No 283
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.44 E-value=1.2e+02 Score=29.94 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
.+.+.+-++|.+|+..-|....-|.....+.++.|.++.|-+.+++.+ +..|.+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L-~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL-ELDPED 62 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH-cCCccc
Confidence 456789999999999989999999999999999999999999999999 777763
No 284
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.44 E-value=1.4e+02 Score=19.16 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.4
Q ss_pred hhhHhHHHHHHhCCCCHHHHHHH
Q 005434 52 RMVDELDDLERRGLFTRHEISEI 74 (697)
Q Consensus 52 ~~~~e~~~~~~~~~f~~~Ei~~i 74 (697)
+-+..|..|...|+.|.+|-...
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~ 25 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQK 25 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH
Confidence 34667889999999999986554
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.09 E-value=6.5e+02 Score=24.58 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhhcCC---chhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC--CCc----
Q 005434 391 SQMQKAIQVYEEALKNVP---SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG--CLT---- 461 (697)
Q Consensus 391 ~~~~~a~~vye~al~~~~---~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~--~~~---- 461 (697)
..++.|...|.-|+-... ....-.+++-+=..++.+..++. +.....+.+|...|++|.+.. |..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~------~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE------ENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH------HHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 456778888877775421 11111223222222332211111 113456789999999999873 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
..+-..-+.+..+.|++++|...+.+.+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2444455788899999999999999988
No 286
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=8.4e+02 Score=25.76 Aligned_cols=149 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHh-CCCCH--HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF-HPKVP--GVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~-~p~~~--~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
+-..+++.+..||.|.-.|.--=+.+--.| ....++++++.+-. +|+-| ..=--...|.++..|-+..|.+.-+||
T Consensus 122 a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ra 201 (491)
T KOG2610|consen 122 AAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRA 201 (491)
T ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhh
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
|+.||.+.=.=..-+......+..-+...=+.. ++..|... ||.+...- |-
T Consensus 202 lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~-------------ted~Wr~s----~mlasHNy------------WH 252 (491)
T KOG2610|consen 202 LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK-------------TEDDWRQS----WMLASHNY------------WH 252 (491)
T ss_pred ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh-------------cccchhhh----hHHHhhhh------------HH
Q ss_pred hhhhhhhhhhhhHHHHHHHHHH
Q 005434 299 KSVDLFREQGLRVLQTIYSGAV 320 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al 320 (697)
..+-.++...++.|..||++-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
No 287
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.33 E-value=2.5e+02 Score=28.10 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 161 W~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
...|.+-....+ +-.+.......|..+|++.+.++.-|+-.. ..=|...|+.=|+..|+..|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChh
Confidence 334444323333 345666677789999999999998888774 566899999999999999996
No 288
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.30 E-value=1.3e+02 Score=21.31 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al 489 (697)
..+.-+...|+.+.|+++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 46677888999999999999988
No 289
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.83 E-value=2.9e+02 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
+++|..+..+|+.. -..|++++|..+|..|+ +.|..++..+
T Consensus 3 l~~Ai~lv~~Av~~---------------D~~g~y~eA~~lY~~al--------e~~~~~~k~e 43 (75)
T cd02684 3 LEKAIALVVQAVKK---------------DQRGDAAAALSLYCSAL--------QYFVPALHYE 43 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHH--------HHHHHHHhhC
Confidence 34566666666543 34688999999999988 5666666443
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=23.64 E-value=1.8e+02 Score=19.07 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
.....+..+...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34566778888999999999999988
No 291
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.33 E-value=5.2e+02 Score=22.43 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHH----hcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM----IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~l 464 (697)
.|+.-+|..+.+..+...+... .|. +...+.. ++.+.+|.. .....+-.+...|.+++...|.+...
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~--lh~~QG~if~~lA~~ten~d------~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWL--LHRLQGTIFYKLAKKTENPD------VKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHH--HHHHHhHHHHHHHHhccCch------HHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4778889999999988776554 452 2222221 111122211 01234456778888998888887666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005434 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (697)
Q Consensus 465 w~~y~~l~~~~~~~~~A~~l~~~al~~~~P 494 (697)
.+..++-+-....++++..-.+++++...|
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 666666555555677777777777744444
No 292
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=21.84 E-value=1e+02 Score=33.80 Aligned_cols=93 Identities=8% Similarity=-0.023 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+.-+|-+|+...|++..+|-.-..-..+.+ +..+..=+.+|+...|.....++.-+...+ ..+..-.|...|+.+
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKV 98 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHh
Confidence 556778999999999999988876643323333 455666677888899998888888888786 678899999999999
Q ss_pred hhhCCCCHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYL 233 (697)
Q Consensus 219 l~~~p~~~~lW~~y~ 233 (697)
....|+.+.+=..+-
T Consensus 99 ~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 99 KKLAPNDPDATRKID 113 (476)
T ss_pred hhcCcCcHHHHHHHH
Confidence 999999776655554
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=20.91 E-value=2.4e+02 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
+..+.+...+++.+..+|.++.+|......+...|+...|...|++.-
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 456778888899999999999999999999999999999998887754
Done!