Query 005434
Match_columns 697
No_of_seqs 310 out of 1615
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 01:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 7.1E-43 2.4E-47 398.7 42.1 460 77-696 51-585 (679)
2 2ooe_A Cleavage stimulation fa 100.0 3.4E-36 1.2E-40 339.4 45.8 452 81-696 2-510 (530)
3 4e6h_A MRNA 3'-END-processing 100.0 1.2E-35 4.1E-40 339.1 45.6 419 144-687 52-536 (679)
4 2uy1_A Cleavage stimulation fa 100.0 8.8E-33 3E-37 307.0 33.5 393 140-686 11-415 (493)
5 2ooe_A Cleavage stimulation fa 100.0 6E-31 2.1E-35 296.4 41.7 406 146-687 1-457 (530)
6 2uy1_A Cleavage stimulation fa 100.0 9.4E-30 3.2E-34 282.7 28.6 393 140-681 30-449 (493)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-18 4.6E-23 186.7 44.6 371 140-669 15-387 (388)
8 2ond_A Cleavage stimulation fa 99.9 4.6E-20 1.6E-24 192.3 27.3 244 411-688 9-274 (308)
9 2xpi_A Anaphase-promoting comp 99.9 1.3E-18 4.3E-23 197.8 39.7 286 346-688 288-583 (597)
10 1w3b_A UDP-N-acetylglucosamine 99.9 7E-18 2.4E-22 181.1 42.2 360 170-688 11-372 (388)
11 2ond_A Cleavage stimulation fa 99.9 1.9E-19 6.4E-24 187.7 28.1 247 90-497 6-275 (308)
12 2xpi_A Anaphase-promoting comp 99.8 3.1E-17 1.1E-21 186.3 44.2 436 140-663 133-592 (597)
13 2y4t_A DNAJ homolog subfamily 99.8 1.2E-15 4.1E-20 166.6 38.5 260 145-539 13-289 (450)
14 2gw1_A Mitochondrial precursor 99.8 1.9E-15 6.6E-20 167.6 39.3 275 361-689 183-483 (514)
15 3fp2_A TPR repeat-containing p 99.8 4.4E-15 1.5E-19 165.9 41.8 410 158-657 25-498 (537)
16 2gw1_A Mitochondrial precursor 99.8 2.3E-15 8E-20 166.9 38.5 439 140-661 22-489 (514)
17 3ieg_A DNAJ homolog subfamily 99.7 1.5E-14 5E-19 152.0 38.0 335 157-668 2-353 (359)
18 3fp2_A TPR repeat-containing p 99.7 2.9E-14 9.8E-19 159.3 40.5 414 141-617 42-498 (537)
19 3ieg_A DNAJ homolog subfamily 99.7 1.2E-13 4E-18 145.1 39.7 311 140-548 19-345 (359)
20 2y4t_A DNAJ homolog subfamily 99.7 1.5E-13 5.2E-18 149.8 39.1 315 140-547 42-367 (450)
21 3hym_B Cell division cycle pro 99.6 4.8E-13 1.6E-17 138.9 30.3 265 140-507 38-314 (330)
22 3hym_B Cell division cycle pro 99.6 1E-12 3.6E-17 136.3 29.2 280 353-688 11-303 (330)
23 4g1t_A Interferon-induced prot 99.6 1.3E-12 4.4E-17 143.6 28.7 311 140-538 67-403 (472)
24 1fch_A Peroxisomal targeting s 99.5 6.4E-13 2.2E-17 140.6 22.9 283 352-688 48-363 (368)
25 4eqf_A PEX5-related protein; a 99.5 7.8E-13 2.7E-17 140.2 22.2 269 365-687 66-359 (365)
26 1fch_A Peroxisomal targeting s 99.5 1.4E-12 4.8E-17 137.9 22.9 277 146-536 48-359 (368)
27 4eqf_A PEX5-related protein; a 99.5 1.6E-12 5.5E-17 137.8 23.0 251 158-511 65-341 (365)
28 4g1t_A Interferon-induced prot 99.5 3.8E-11 1.3E-15 131.8 34.0 376 171-686 64-461 (472)
29 3cv0_A Peroxisome targeting si 99.5 6.9E-12 2.4E-16 129.8 25.7 151 346-538 154-317 (327)
30 3cv0_A Peroxisome targeting si 99.5 7E-12 2.4E-16 129.8 23.7 263 140-489 37-313 (327)
31 2h6f_A Protein farnesyltransfe 99.3 1E-10 3.5E-15 125.1 22.1 263 151-509 90-365 (382)
32 4h7y_A Dual specificity protei 99.3 7.2E-12 2.5E-16 110.6 10.5 120 492-654 8-127 (161)
33 2pl2_A Hypothetical conserved 99.2 7.1E-10 2.4E-14 108.7 21.9 210 155-489 2-212 (217)
34 3uq3_A Heat shock protein STI1 99.2 1.7E-09 5.8E-14 107.4 23.1 234 157-502 4-252 (258)
35 4h7y_A Dual specificity protei 99.2 3.1E-10 1.1E-14 100.3 15.1 120 86-232 7-134 (161)
36 2h6f_A Protein farnesyltransfe 99.2 6.4E-09 2.2E-13 111.0 27.7 246 140-474 113-365 (382)
37 2pl2_A Hypothetical conserved 99.2 3E-09 1E-13 104.2 22.5 198 459-682 2-212 (217)
38 3u4t_A TPR repeat-containing p 99.2 1.1E-09 3.9E-14 110.1 20.0 245 158-504 3-262 (272)
39 3uq3_A Heat shock protein STI1 99.1 6.3E-09 2.1E-13 103.3 22.9 212 442-685 19-237 (258)
40 2vq2_A PILW, putative fimbrial 99.1 9.7E-09 3.3E-13 99.6 23.7 209 458-689 4-216 (225)
41 2vq2_A PILW, putative fimbrial 99.1 1.1E-08 3.7E-13 99.2 24.0 214 153-500 3-219 (225)
42 2ho1_A Type 4 fimbrial biogene 99.1 5.5E-09 1.9E-13 103.9 22.1 215 152-501 30-247 (252)
43 2q7f_A YRRB protein; TPR, prot 99.1 2.6E-09 9E-14 105.3 19.5 188 442-686 37-224 (243)
44 3u4t_A TPR repeat-containing p 99.1 1.6E-08 5.5E-13 101.6 24.9 232 345-620 18-260 (272)
45 2ho1_A Type 4 fimbrial biogene 99.1 8.8E-09 3E-13 102.4 21.8 209 458-689 32-243 (252)
46 3mkr_A Coatomer subunit epsilo 99.1 8.4E-09 2.9E-13 106.0 21.4 189 442-657 79-271 (291)
47 1xnf_A Lipoprotein NLPI; TPR, 99.1 2.4E-08 8.3E-13 100.3 24.4 226 390-655 18-249 (275)
48 2q7f_A YRRB protein; TPR, prot 99.1 9.7E-09 3.3E-13 101.1 20.3 170 462-688 23-192 (243)
49 3vtx_A MAMA; tetratricopeptide 99.0 3.2E-08 1.1E-12 93.4 20.6 171 156-410 3-174 (184)
50 3vtx_A MAMA; tetratricopeptide 99.0 3.5E-08 1.2E-12 93.1 19.8 171 460-687 3-173 (184)
51 4abn_A Tetratricopeptide repea 99.0 3.2E-08 1.1E-12 109.1 21.4 212 442-679 82-316 (474)
52 1xnf_A Lipoprotein NLPI; TPR, 98.9 5.3E-08 1.8E-12 97.8 20.9 221 441-688 18-248 (275)
53 3mkr_A Coatomer subunit epsilo 98.9 7.4E-08 2.5E-12 98.8 21.3 183 309-540 81-268 (291)
54 3ro2_A PINS homolog, G-protein 98.9 3.6E-08 1.2E-12 101.4 19.1 273 390-687 18-335 (338)
55 4abn_A Tetratricopeptide repea 98.9 7E-08 2.4E-12 106.3 22.0 226 140-485 84-315 (474)
56 4a1s_A PINS, partner of inscut 98.9 6.9E-08 2.4E-12 103.4 21.0 272 390-686 61-374 (411)
57 3sf4_A G-protein-signaling mod 98.9 1.5E-07 5.1E-12 100.1 22.0 285 364-686 9-338 (406)
58 4i17_A Hypothetical protein; T 98.8 2E-06 6.7E-11 84.0 25.4 80 155-235 4-85 (228)
59 2xm6_A Protein corresponding t 98.8 0.00013 4.4E-09 80.2 42.5 412 146-681 29-468 (490)
60 4i17_A Hypothetical protein; T 98.7 2E-06 6.7E-11 84.1 23.9 211 361-625 4-224 (228)
61 3dra_A Protein farnesyltransfe 98.7 3.2E-06 1.1E-10 86.9 25.9 257 163-505 37-301 (306)
62 3as5_A MAMA; tetratricopeptide 98.7 8.5E-07 2.9E-11 82.5 19.7 171 462-689 8-178 (186)
63 4gyw_A UDP-N-acetylglucosamine 98.7 4E-07 1.4E-11 105.0 19.3 172 458-686 5-176 (723)
64 2xm6_A Protein corresponding t 98.7 0.00096 3.3E-08 73.2 45.3 382 178-686 28-434 (490)
65 3nf1_A KLC 1, kinesin light ch 98.6 9E-07 3.1E-11 90.2 17.1 211 459-686 24-309 (311)
66 3as5_A MAMA; tetratricopeptide 98.6 1.6E-06 5.4E-11 80.7 17.0 167 159-409 9-176 (186)
67 1ouv_A Conserved hypothetical 98.6 2.7E-05 9.2E-10 78.2 26.8 139 361-538 3-145 (273)
68 4gyw_A UDP-N-acetylglucosamine 98.6 1.5E-06 5E-11 100.3 19.1 169 324-537 6-175 (723)
69 3ro2_A PINS homolog, G-protein 98.6 1.1E-06 3.6E-11 90.3 16.3 225 442-686 19-294 (338)
70 4a1s_A PINS, partner of inscut 98.6 1.2E-06 4E-11 93.7 17.2 225 442-686 62-334 (411)
71 3sf4_A G-protein-signaling mod 98.5 2.1E-06 7.2E-11 91.1 18.0 226 442-686 23-298 (406)
72 1ouv_A Conserved hypothetical 98.5 3.6E-05 1.2E-09 77.2 26.2 250 154-502 2-261 (273)
73 1xi4_A Clathrin heavy chain; a 98.5 0.002 6.8E-08 77.1 43.5 180 461-678 1194-1378(1630)
74 3qky_A Outer membrane assembly 98.5 1.5E-05 5E-10 79.7 21.7 198 151-411 8-229 (261)
75 4ga2_A E3 SUMO-protein ligase 98.5 6.7E-07 2.3E-11 81.7 10.4 124 356-511 23-148 (150)
76 2r5s_A Uncharacterized protein 98.5 1.8E-06 6E-11 81.0 13.6 170 459-685 3-174 (176)
77 3qou_A Protein YBBN; thioredox 98.5 7.8E-06 2.7E-10 83.4 19.3 169 323-535 113-283 (287)
78 3nf1_A KLC 1, kinesin light ch 98.4 3.1E-06 1.1E-10 86.1 16.2 245 360-652 23-309 (311)
79 3edt_B KLC 2, kinesin light ch 98.4 1.7E-06 5.9E-11 86.5 13.3 230 443-684 23-281 (283)
80 2r5s_A Uncharacterized protein 98.4 2E-06 7E-11 80.5 12.6 168 155-406 3-173 (176)
81 3qou_A Protein YBBN; thioredox 98.4 1E-05 3.6E-10 82.4 18.8 169 459-684 114-284 (287)
82 3qky_A Outer membrane assembly 98.4 5.1E-05 1.7E-09 75.6 23.6 183 458-657 11-231 (261)
83 4ga2_A E3 SUMO-protein ligase 98.4 5.7E-06 2E-10 75.4 14.8 134 390-553 10-144 (150)
84 4gco_A Protein STI-1; structur 98.3 7E-06 2.4E-10 72.4 13.6 94 140-234 29-123 (126)
85 3dss_A Geranylgeranyl transfer 98.3 0.00058 2E-08 70.5 29.8 245 140-468 46-315 (331)
86 2pzi_A Probable serine/threoni 98.3 2.7E-06 9.2E-11 98.0 13.6 165 442-626 405-579 (681)
87 2vsy_A XCC0866; transferase, g 98.3 1.7E-05 5.8E-10 89.2 19.8 161 442-659 3-166 (568)
88 2pzi_A Probable serine/threoni 98.3 4.4E-06 1.5E-10 96.2 14.9 167 307-509 405-580 (681)
89 2vsy_A XCC0866; transferase, g 98.3 1.2E-05 4.2E-10 90.3 17.5 163 141-371 6-169 (568)
90 3dra_A Protein farnesyltransfe 98.3 0.00012 4.1E-09 75.0 23.3 243 346-622 49-300 (306)
91 3urz_A Uncharacterized protein 98.2 3E-05 1E-09 74.8 17.0 92 141-233 21-129 (208)
92 2yhc_A BAMD, UPF0169 lipoprote 98.2 8.8E-05 3E-09 72.3 20.3 192 461-689 3-218 (225)
93 1elw_A TPR1-domain of HOP; HOP 98.2 2.1E-05 7.1E-10 66.9 13.8 96 140-236 20-116 (118)
94 1hz4_A MALT regulatory protein 98.2 0.00052 1.8E-08 72.0 27.4 263 390-686 27-324 (373)
95 3gyz_A Chaperone protein IPGC; 98.2 2.9E-06 9.9E-11 77.7 8.5 91 145-236 23-114 (151)
96 3dss_A Geranylgeranyl transfer 98.2 0.0011 3.8E-08 68.4 28.6 250 174-501 47-313 (331)
97 2fo7_A Synthetic consensus TPR 98.2 4.7E-05 1.6E-09 66.1 15.9 120 390-538 14-134 (136)
98 2vgx_A Chaperone SYCD; alterna 98.2 1.1E-05 3.8E-10 73.3 11.9 90 145-235 8-98 (148)
99 3urz_A Uncharacterized protein 98.2 2.7E-05 9.3E-10 75.0 15.5 150 442-613 18-189 (208)
100 3gyz_A Chaperone protein IPGC; 98.2 6.1E-06 2.1E-10 75.5 10.0 124 70-226 14-138 (151)
101 3e4b_A ALGK; tetratricopeptide 98.2 0.00098 3.3E-08 72.5 29.4 319 308-684 89-421 (452)
102 4gco_A Protein STI-1; structur 98.1 1.9E-05 6.6E-10 69.5 11.7 86 150-236 5-91 (126)
103 2xcb_A PCRH, regulatory protei 98.1 8.4E-06 2.9E-10 73.3 9.4 91 145-236 5-96 (142)
104 3ulq_A Response regulator aspa 98.1 0.00013 4.5E-09 77.1 20.4 228 441-686 116-370 (383)
105 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00023 7.8E-09 69.3 20.2 188 302-496 13-217 (225)
106 3upv_A Heat shock protein STI1 98.1 3.6E-05 1.2E-09 67.2 12.8 96 140-236 20-122 (126)
107 2vyi_A SGTA protein; chaperone 98.1 5.9E-05 2E-09 65.3 13.9 97 140-237 28-125 (131)
108 2c2l_A CHIP, carboxy terminus 98.1 0.00013 4.3E-09 74.1 18.4 80 155-235 1-81 (281)
109 4aez_C MAD3, mitotic spindle c 98.1 3.6E-05 1.2E-09 73.4 13.0 134 72-238 49-197 (223)
110 3esl_A Checkpoint serine/threo 98.1 5.7E-05 2E-09 70.8 14.1 140 72-238 6-162 (202)
111 1qqe_A Vesicular transport pro 98.1 0.00012 4.2E-09 74.5 18.2 238 395-683 3-268 (292)
112 2e2e_A Formate-dependent nitri 98.1 6.1E-05 2.1E-09 70.0 14.6 96 140-236 26-125 (177)
113 2xcb_A PCRH, regulatory protei 98.0 3E-05 1E-09 69.6 11.5 93 140-233 34-127 (142)
114 3q7a_A Farnesyltransferase alp 98.0 0.0012 4E-08 68.6 24.9 259 173-505 70-345 (349)
115 3edt_B KLC 2, kinesin light ch 98.0 0.00017 5.7E-09 71.7 18.2 191 442-650 57-281 (283)
116 2vgx_A Chaperone SYCD; alterna 98.0 4.3E-05 1.5E-09 69.4 12.2 90 140-230 37-127 (148)
117 1hxi_A PEX5, peroxisome target 98.0 1.9E-05 6.4E-10 69.0 9.4 86 140-226 33-119 (121)
118 2fo7_A Synthetic consensus TPR 98.0 0.00026 8.9E-09 61.2 16.9 118 558-687 18-135 (136)
119 1na0_A Designed protein CTPR3; 98.0 9.8E-05 3.4E-09 63.2 13.7 96 140-236 25-121 (125)
120 2wvi_A Mitotic checkpoint seri 98.0 8.2E-05 2.8E-09 67.7 13.2 130 77-240 2-145 (164)
121 2lni_A Stress-induced-phosphop 98.0 4E-05 1.4E-09 66.9 11.1 97 140-237 32-129 (133)
122 3q49_B STIP1 homology and U bo 98.0 4.7E-05 1.6E-09 67.2 11.6 98 140-238 25-128 (137)
123 2e2e_A Formate-dependent nitri 98.0 7.2E-05 2.4E-09 69.6 13.2 120 349-500 29-152 (177)
124 2c2l_A CHIP, carboxy terminus 98.0 9.7E-05 3.3E-09 74.9 15.1 179 442-650 18-199 (281)
125 1xi4_A Clathrin heavy chain; a 98.0 0.075 2.6E-06 63.9 42.3 256 155-512 1102-1370(1630)
126 3upv_A Heat shock protein STI1 98.0 7.6E-05 2.6E-09 65.1 12.2 111 363-505 3-120 (126)
127 1qqe_A Vesicular transport pro 97.9 0.00044 1.5E-08 70.3 19.4 202 442-660 51-279 (292)
128 1a17_A Serine/threonine protei 97.9 0.00027 9.3E-09 64.2 16.0 95 140-235 29-124 (166)
129 3sz7_A HSC70 cochaperone (SGT) 97.9 8.1E-05 2.8E-09 68.4 12.2 91 140-231 27-118 (164)
130 2dba_A Smooth muscle cell asso 97.9 8.1E-05 2.8E-09 66.3 11.8 96 140-236 44-143 (148)
131 1elw_A TPR1-domain of HOP; HOP 97.9 0.0002 6.9E-09 60.5 13.9 111 364-506 4-115 (118)
132 2vyi_A SGTA protein; chaperone 97.9 0.00011 3.6E-09 63.6 11.8 118 362-511 10-128 (131)
133 4a1g_A Mitotic checkpoint seri 97.9 7.3E-05 2.5E-09 67.1 10.7 126 76-237 8-147 (152)
134 1a17_A Serine/threonine protei 97.9 0.00029 9.8E-09 64.0 15.2 107 365-503 14-121 (166)
135 2dba_A Smooth muscle cell asso 97.9 0.00024 8.2E-09 63.1 14.4 116 360-507 24-143 (148)
136 2lni_A Stress-induced-phosphop 97.9 9E-05 3.1E-09 64.5 11.2 117 361-509 13-130 (133)
137 1na0_A Designed protein CTPR3; 97.8 0.00036 1.2E-08 59.5 14.2 112 364-507 9-121 (125)
138 2kck_A TPR repeat; tetratricop 97.8 0.00019 6.5E-09 60.1 12.0 97 587-689 12-111 (112)
139 1p5q_A FKBP52, FK506-binding p 97.8 8.2E-05 2.8E-09 77.6 11.4 123 357-511 140-278 (336)
140 3q49_B STIP1 homology and U bo 97.8 0.00033 1.1E-08 61.5 13.7 85 152-237 3-88 (137)
141 2xev_A YBGF; tetratricopeptide 97.8 0.0003 1E-08 61.1 13.1 96 140-236 18-120 (129)
142 3q7a_A Farnesyltransferase alp 97.8 0.0024 8.4E-08 66.2 21.8 167 347-548 71-247 (349)
143 1p5q_A FKBP52, FK506-binding p 97.8 0.00036 1.2E-08 72.7 15.7 105 140-245 163-283 (336)
144 2kck_A TPR repeat; tetratricop 97.8 0.00019 6.6E-09 60.1 10.9 85 140-225 22-110 (112)
145 3k9i_A BH0479 protein; putativ 97.7 5.6E-05 1.9E-09 65.2 7.1 87 142-229 8-98 (117)
146 3ulq_A Response regulator aspa 97.7 0.0024 8.2E-08 67.3 21.3 194 467-680 108-331 (383)
147 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00038 1.3E-08 66.0 13.3 100 140-240 54-170 (198)
148 1zu2_A Mitochondrial import re 97.7 0.00035 1.2E-08 63.6 11.6 90 139-229 17-128 (158)
149 3e4b_A ALGK; tetratricopeptide 97.7 0.023 7.9E-07 61.5 28.3 334 305-684 15-387 (452)
150 2kat_A Uncharacterized protein 97.6 0.00017 5.7E-09 61.8 8.8 81 143-224 4-85 (115)
151 1hxi_A PEX5, peroxisome target 97.6 0.00022 7.4E-09 62.1 9.4 92 591-688 27-118 (121)
152 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00062 2.1E-08 62.3 12.9 88 593-686 23-110 (164)
153 3rkv_A Putative peptidylprolyl 97.6 0.00051 1.7E-08 62.8 11.9 96 140-236 27-142 (162)
154 1hz4_A MALT regulatory protein 97.6 0.0045 1.5E-07 64.8 20.5 224 442-686 28-284 (373)
155 1elr_A TPR2A-domain of HOP; HO 97.6 0.00082 2.8E-08 57.9 12.3 96 140-237 20-123 (131)
156 3q15_A PSP28, response regulat 97.5 0.0039 1.3E-07 65.6 19.6 234 167-489 110-363 (378)
157 3k9i_A BH0479 protein; putativ 97.5 0.00021 7.3E-09 61.5 7.6 88 442-540 4-94 (117)
158 1hh8_A P67PHOX, NCF-2, neutrop 97.5 0.0015 5.3E-08 62.1 14.3 120 390-540 19-154 (213)
159 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00096 3.3E-08 72.7 14.1 104 140-244 284-403 (457)
160 2kat_A Uncharacterized protein 97.5 0.0017 5.7E-08 55.3 12.7 83 446-539 3-85 (115)
161 4gcn_A Protein STI-1; structur 97.5 0.00053 1.8E-08 60.1 9.7 92 591-688 18-116 (127)
162 3q15_A PSP28, response regulat 97.4 0.0088 3E-07 62.8 20.6 228 442-685 115-366 (378)
163 1dce_A Protein (RAB geranylger 97.4 0.009 3.1E-07 66.7 21.3 167 141-374 46-236 (567)
164 2xev_A YBGF; tetratricopeptide 97.4 0.0016 5.4E-08 56.4 11.9 92 591-688 12-109 (129)
165 1na3_A Designed protein CTPR2; 97.4 0.00096 3.3E-08 53.7 9.8 80 156-236 7-87 (91)
166 4f3v_A ESX-1 secretion system 97.4 0.0011 3.6E-08 66.7 11.9 192 442-662 20-248 (282)
167 3mv2_B Coatomer subunit epsilo 97.3 0.0087 3E-07 60.8 17.9 181 447-655 85-287 (310)
168 1ihg_A Cyclophilin 40; ppiase 97.3 0.0015 5E-08 69.0 12.6 101 140-241 239-356 (370)
169 4gcn_A Protein STI-1; structur 97.3 0.0019 6.6E-08 56.4 11.2 87 140-228 24-118 (127)
170 2ifu_A Gamma-SNAP; membrane fu 97.3 0.01 3.4E-07 60.5 18.1 193 442-653 5-226 (307)
171 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00035 1.2E-08 72.9 7.0 124 390-538 192-330 (338)
172 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0011 3.9E-08 72.0 11.5 123 360-511 264-399 (457)
173 1b89_A Protein (clathrin heavy 97.2 0.0016 5.6E-08 69.4 11.8 230 390-681 74-308 (449)
174 3esl_A Checkpoint serine/threo 97.2 0.01 3.4E-07 55.6 15.7 140 522-667 7-162 (202)
175 3ma5_A Tetratricopeptide repea 97.2 0.00045 1.6E-08 57.6 6.1 71 153-224 2-73 (100)
176 4a1g_A Mitotic checkpoint seri 97.2 0.007 2.4E-07 54.2 13.9 124 523-689 6-135 (152)
177 2ifu_A Gamma-SNAP; membrane fu 97.2 0.0024 8.3E-08 65.2 12.6 190 475-686 4-225 (307)
178 1wao_1 Serine/threonine protei 97.2 0.0025 8.6E-08 69.7 13.2 95 140-235 22-117 (477)
179 2if4_A ATFKBP42; FKBP-like, al 97.2 0.001 3.4E-08 69.3 9.6 96 140-236 195-308 (338)
180 4f3v_A ESX-1 secretion system 97.2 0.0024 8.2E-08 64.1 11.8 143 328-504 103-248 (282)
181 1elr_A TPR2A-domain of HOP; HO 97.2 0.0024 8.1E-08 54.8 10.5 91 591-687 14-111 (131)
182 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0055 1.9E-07 57.8 13.8 102 390-510 51-169 (198)
183 1hh8_A P67PHOX, NCF-2, neutrop 97.1 0.0067 2.3E-07 57.5 14.4 96 587-688 43-154 (213)
184 3bee_A Putative YFRE protein; 97.1 0.0025 8.5E-08 52.5 9.4 77 154-233 2-82 (93)
185 1dce_A Protein (RAB geranylger 97.1 0.027 9.1E-07 62.9 20.8 181 346-548 45-231 (567)
186 3u64_A Protein TP_0956; tetrat 97.0 0.024 8.1E-07 56.5 17.1 91 596-687 178-272 (301)
187 1zu2_A Mitochondrial import re 97.0 0.0047 1.6E-07 56.1 11.1 94 442-539 16-123 (158)
188 1b89_A Protein (clathrin heavy 97.0 0.07 2.4E-06 56.8 21.2 236 140-511 19-255 (449)
189 3rjv_A Putative SEL1 repeat pr 96.9 0.054 1.8E-06 51.7 18.8 79 446-536 4-82 (212)
190 2l6j_A TPR repeat-containing p 96.9 0.0064 2.2E-07 50.7 10.7 68 157-225 3-71 (111)
191 3mv2_B Coatomer subunit epsilo 96.9 0.042 1.4E-06 55.8 18.0 180 441-652 113-307 (310)
192 3rkv_A Putative peptidylprolyl 96.9 0.0033 1.1E-07 57.2 9.2 69 591-665 73-142 (162)
193 2hr2_A Hypothetical protein; a 96.9 0.0051 1.7E-07 56.0 9.9 89 441-540 24-135 (159)
194 1ihg_A Cyclophilin 40; ppiase 96.8 0.0051 1.7E-07 64.9 11.5 105 390-510 236-354 (370)
195 4aez_C MAD3, mitotic spindle c 96.8 0.0061 2.1E-07 58.1 10.4 98 580-689 71-184 (223)
196 4b4t_Q 26S proteasome regulato 96.8 0.039 1.3E-06 58.6 18.2 201 469-686 11-247 (434)
197 3ma5_A Tetratricopeptide repea 96.7 0.011 3.7E-07 49.0 10.3 71 457-538 2-72 (100)
198 2hr2_A Hypothetical protein; a 96.7 0.0058 2E-07 55.6 8.8 93 140-233 27-143 (159)
199 3u64_A Protein TP_0956; tetrat 96.7 0.0096 3.3E-07 59.3 10.9 102 136-237 175-288 (301)
200 4g26_A Pentatricopeptide repea 96.6 0.19 6.5E-06 55.0 22.4 175 463-651 27-205 (501)
201 2kc7_A BFR218_protein; tetratr 96.5 0.0045 1.6E-07 50.8 6.6 83 591-687 10-93 (99)
202 1na3_A Designed protein CTPR2; 96.5 0.012 4.1E-07 47.0 8.9 65 442-507 23-87 (91)
203 1wao_1 Serine/threonine protei 96.4 0.025 8.4E-07 61.8 13.8 89 441-540 19-107 (477)
204 2qfc_A PLCR protein; TPR, HTH, 96.4 0.086 2.9E-06 52.9 16.9 169 464-652 77-268 (293)
205 3gw4_A Uncharacterized protein 96.4 0.085 2.9E-06 49.0 15.5 84 442-536 6-95 (203)
206 2kc7_A BFR218_protein; tetratr 96.3 0.023 8E-07 46.3 10.0 56 173-229 16-72 (99)
207 2qfc_A PLCR protein; TPR, HTH, 96.3 0.25 8.5E-06 49.4 19.3 155 442-610 89-266 (293)
208 3u3w_A Transcriptional activat 96.2 0.13 4.4E-06 51.6 17.0 165 469-650 82-266 (293)
209 2wvi_A Mitotic checkpoint seri 96.2 0.045 1.5E-06 49.6 11.8 49 640-688 79-129 (164)
210 3u3w_A Transcriptional activat 96.2 0.15 5.1E-06 51.1 17.1 153 345-535 90-265 (293)
211 2l6j_A TPR repeat-containing p 96.2 0.023 8E-07 47.1 9.3 69 442-511 18-92 (111)
212 3rjv_A Putative SEL1 repeat pr 96.0 0.4 1.4E-05 45.4 18.4 189 312-538 5-199 (212)
213 4b4t_Q 26S proteasome regulato 95.9 0.16 5.5E-06 53.7 16.5 194 442-652 18-247 (434)
214 3gw4_A Uncharacterized protein 95.8 0.16 5.6E-06 47.0 14.5 159 474-652 4-178 (203)
215 4g26_A Pentatricopeptide repea 95.6 0.7 2.4E-05 50.4 20.5 165 498-685 27-205 (501)
216 3ro3_A PINS homolog, G-protein 95.6 0.12 4.3E-06 45.3 12.1 65 463-538 10-80 (164)
217 3ro3_A PINS homolog, G-protein 95.4 0.11 3.8E-06 45.6 11.0 121 558-687 26-161 (164)
218 1pc2_A Mitochondria fission pr 95.0 0.15 5E-06 45.7 10.3 94 137-231 11-110 (152)
219 3bee_A Putative YFRE protein; 94.8 0.15 5.1E-06 41.6 8.9 71 458-539 2-75 (93)
220 3ly7_A Transcriptional activat 94.5 3.5 0.00012 42.6 20.4 150 355-540 185-343 (372)
221 3ly7_A Transcriptional activat 93.3 1.6 5.4E-05 45.2 15.1 123 522-655 214-344 (372)
222 2v5f_A Prolyl 4-hydroxylase su 89.3 2.3 7.9E-05 34.9 9.6 73 163-236 10-90 (104)
223 3n71_A Histone lysine methyltr 86.5 4.9 0.00017 43.5 12.5 85 441-535 322-421 (490)
224 1klx_A Cysteine rich protein B 86.5 9.9 0.00034 32.7 12.5 86 593-684 37-126 (138)
225 1pc2_A Mitochondria fission pr 86.3 4.7 0.00016 35.9 10.0 88 441-539 11-103 (152)
226 3n71_A Histone lysine methyltr 86.3 3.3 0.00011 44.9 11.0 121 558-685 326-465 (490)
227 2v5f_A Prolyl 4-hydroxylase su 81.5 9 0.00031 31.1 9.4 68 592-665 16-90 (104)
228 3qww_A SET and MYND domain-con 80.3 3.4 0.00012 43.9 7.9 84 442-535 312-410 (433)
229 3qww_A SET and MYND domain-con 79.9 3.6 0.00012 43.7 7.9 85 595-685 312-412 (433)
230 1klx_A Cysteine rich protein B 78.8 30 0.001 29.5 15.2 117 389-537 7-127 (138)
231 3qwp_A SET and MYND domain-con 76.2 6.9 0.00024 41.5 8.8 88 592-685 298-401 (429)
232 1nzn_A CGI-135 protein, fissio 75.1 13 0.00045 31.8 8.5 89 139-229 16-111 (126)
233 3qwp_A SET and MYND domain-con 71.5 8.2 0.00028 40.9 7.9 84 442-535 301-399 (429)
234 3txn_A 26S proteasome regulato 59.7 1.6E+02 0.0056 30.3 16.2 167 466-652 23-212 (394)
235 4gns_B Protein CSD3, chitin bi 57.1 44 0.0015 37.9 10.6 49 463-512 338-386 (754)
236 1y8m_A FIS1; mitochondria, unk 51.6 1.2E+02 0.0042 26.4 10.6 85 140-227 22-112 (144)
237 3o48_A Mitochondria fission 1 44.3 1.5E+02 0.0052 25.4 9.7 85 140-227 23-113 (134)
238 3txn_A 26S proteasome regulato 43.6 2.9E+02 0.0099 28.4 17.5 152 523-686 35-212 (394)
239 3spa_A Mtrpol, DNA-directed RN 42.3 2.6E+02 0.0089 32.9 13.8 86 441-535 140-229 (1134)
240 4b4t_R RPN7, 26S proteasome re 41.4 2.4E+02 0.0083 29.3 13.0 99 582-686 132-239 (429)
241 3spa_A Mtrpol, DNA-directed RN 39.0 2.2E+02 0.0077 33.5 12.6 105 545-657 129-236 (1134)
242 3mkq_A Coatomer beta'-subunit; 31.4 5.7E+02 0.02 28.3 17.7 48 470-533 660-707 (814)
243 2ff4_A Probable regulatory pro 28.5 1.5E+02 0.0051 30.5 8.5 48 173-221 187-234 (388)
244 1zbp_A Hypothetical protein VP 27.2 1.8E+02 0.0063 28.2 8.1 54 442-496 11-64 (273)
245 4gns_B Protein CSD3, chitin bi 26.4 4.1E+02 0.014 30.0 12.0 45 442-486 351-395 (754)
246 2ff4_A Probable regulatory pro 25.8 1.7E+02 0.006 29.9 8.4 44 467-511 176-219 (388)
247 4g3b_A Alpha4F3D; alpha helix, 24.2 82 0.0028 17.7 2.8 18 97-114 6-23 (26)
248 3o48_A Mitochondria fission 1 24.2 3.4E+02 0.012 23.2 11.1 92 390-497 20-112 (134)
249 1g6u_A Domain swapped dimer; d 24.1 1.5E+02 0.0051 19.2 5.0 32 53-85 5-36 (48)
250 1y8m_A FIS1; mitochondria, unk 22.4 3.8E+02 0.013 23.2 11.5 92 390-497 19-111 (144)
251 2dl1_A Spartin; SPG20, MIT, st 22.1 2E+02 0.007 23.9 6.3 43 635-685 10-52 (116)
252 1nzn_A CGI-135 protein, fissio 21.8 3.6E+02 0.012 22.7 12.0 88 441-539 14-106 (126)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=7.1e-43 Score=398.68 Aligned_cols=460 Identities=11% Similarity=0.101 Sum_probs=346.7
Q ss_pred hhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCC
Q 005434 77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG 156 (697)
Q Consensus 77 kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~ 156 (697)
+...||..|.++|.+...|++||+++... ....+++.+|+|++..||.
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~--------------------------------~~~~~aR~vyEraL~~fP~ 98 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSL--------------------------------KQWKQVYETFDKLHDRFPL 98 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhc--------------------------------CcHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999997432 1267788999999999999
Q ss_pred CHHHHHHHHHHHHHhcC----chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhhh-
Q 005434 157 DIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLNV--------TAARALMQNGLRV- 221 (697)
Q Consensus 157 ~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~p--~~~~lW~~~a~~e~~~~~~~--------~~aR~~~~r~l~~- 221 (697)
+..+|..|++++.+.+. ..++.+|+|||..+| .++.+|..|+.|... .+++ +.+|.+|++|+..
T Consensus 99 ~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~-~~~~~~~~~~~r~~vr~~FErAl~~v 177 (679)
T 4e6h_A 99 MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRK-KNDIITGGEEARNIVIQAFQVVVDKC 177 (679)
T ss_dssp CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHH-HSCSTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-hcccccccchhHHHHHHHHHHHHHHh
Confidence 99999999999988754 479999999999994 578899999999864 3432 5567999999986
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 222 ---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 222 ---~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
+|.+..||..|++||.... .. . . ++
T Consensus 178 G~~d~~s~~iW~~Yi~f~~~~~----------~~-~-------------~----------------------------~e 205 (679)
T 4e6h_A 178 AIFEPKSIQFWNEYLHFLEHWK----------PV-N-------------K----------------------------FE 205 (679)
T ss_dssp TTTCSSCHHHHHHHHHHHHTCC----------CC-S-------------H----------------------------HH
T ss_pred CcccccchHHHHHHHHHHHhcc----------cc-C-------------c----------------------------HH
Confidence 4557899999999986421 00 0 0 00
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
..+.++.++.||++++. +|..- ...++..|..|+.......++.++....
T Consensus 206 ------eq~~~~~~R~iy~raL~-iP~~~--~~~~w~~Y~~fe~~~~~~~a~~~~~e~~--------------------- 255 (679)
T 4e6h_A 206 ------EQQRVQYIRKLYKTLLC-QPMDC--LESMWQRYTQWEQDVNQLTARRHIGELS--------------------- 255 (679)
T ss_dssp ------HHHHHHHHHHHHHHHTT-SCCSS--HHHHHHHHHHHHHHHCTTTHHHHHHHHH---------------------
T ss_pred ------HHhHHHHHHHHHHHHHh-CccHH--HHHHHHHHHHHHHhcCcchHHHHHHHhh---------------------
Confidence 01245789999999996 55431 2333334444431100112333332211
Q ss_pred CCCCCCCcCccchHHHHHHHHHHH------Hhhc-------------CCc--------hhHHHHHHHHHHHHhcCCcccc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEE------ALKN-------------VPS--------SMIFDLYTKFLMDMIAPKKEET 431 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~------al~~-------------~~~--------~~lw~~yi~~~~~~~~~~~~~~ 431 (697)
..+..|+.+|.+ +|.. +|. ..+|..|+.|++....
T Consensus 256 ------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~------ 317 (679)
T 4e6h_A 256 ------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL------ 317 (679)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT------
T ss_pred ------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc------
Confidence 112223333322 2211 121 1399999999875210
Q ss_pred cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434 432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR-KLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (697)
Q Consensus 432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~-~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (697)
.+. .....++++.+|++|+...|..+++|+.|++++...|+.++|+ +++++|+ ..+|.+..||..|+.+++..
T Consensus 318 ~l~-----~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 318 ELS-----DDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QCIPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp CCC-----HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHT
T ss_pred ccc-----chhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHh
Confidence 000 0123567889999999999999999999999999999999996 9999999 79999999999999999987
Q ss_pred cccCCCCCCccchHHHHHHHHHHHhhc-----------Ch---------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 005434 511 VTRNSFSPSKADILSIFELLKCILTKV-----------SA---------LESESLWLMALKFFMNQK--HYFDKLVEIAL 568 (697)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~f~~al~~~-----------p~---------~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~ 568 (697)
+. +++++++|++++..+ |. .+...+|+.|+.++.+.+ +.++++|++|+
T Consensus 392 ~~----------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 392 TK----------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp TC----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63 799999999999864 31 124569999999887665 68999999999
Q ss_pred HhhhhCCCCCCCCChHHHHHHHHHHhCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434 569 ISVAKDGGGESGFSLPSAIINLVIQKDG-IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647 (697)
Q Consensus 569 ~~~~~~~~~~~~~~l~~~yl~~~~~~~~-~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a 647 (697)
+.++.. ...++..++.++...++ .++||+||+++++.+|.+..+|..|++||...+ ++++||++|++|
T Consensus 462 ~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~------~~~~AR~lfera 530 (679)
T 4e6h_A 462 RLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN------EESQVKSLFESS 530 (679)
T ss_dssp HTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred HhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHH
Confidence 763221 34455555555555554 899999999999999999999999999999998 899999999999
Q ss_pred HhhCCC---CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc---ccccCCC
Q 005434 648 LATYDQ---NTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST---ALTALPD 696 (697)
Q Consensus 648 l~~~~~---~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~---~f~~~~~ 696 (697)
+..+++ ...+|..|++||..+|+.+.+++|+.|+.+.+|++. .|+.+|.
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 998872 459999999999999999999999999999999763 5776663
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=3.4e-36 Score=339.39 Aligned_cols=452 Identities=15% Similarity=0.178 Sum_probs=342.7
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCCHHH
Q 005434 81 FEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIEL 160 (697)
Q Consensus 81 fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~~~l 160 (697)
||..|...|.+...|+.|+++ ... ....+++.+|++++..+|++..+
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~--------------------------------~~~~~a~~~~e~al~~~P~~~~~ 48 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQN--------------------------------QPIDKARKTYERLVAQFPSSGRF 48 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHS--------------------------------SCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHh--------------------------------CCHHHHHHHHHHHHHHCCCCHHH
Confidence 788999999999999999985 211 12567889999999999999999
Q ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH----HHHHhhhhC---CCCHHHHHHH
Q 005434 161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA----LMQNGLRVC---PTSEELWVEY 232 (697)
Q Consensus 161 W~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~----~~~r~l~~~---p~~~~lW~~y 232 (697)
|..|++++.+.| ..+++.+|++|+..+| ++.+|+.|+.+..+..|+++.||. +|++++..+ |.+..+|..|
T Consensus 49 w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~ 127 (530)
T 2ooe_A 49 WKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 127 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 999999999988 4789999999999999 588999999988777788877765 999998764 5678999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (697)
Q Consensus 233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (697)
+.||.... +.. .| ...++.+.|
T Consensus 128 ~~~~~~~~----------~~~--------------~~----------------------------------~~~~~~~~a 149 (530)
T 2ooe_A 128 INFLKGVE----------AVG--------------SY----------------------------------AENQRITAV 149 (530)
T ss_dssp HHHHHHSC----------CCS--------------ST----------------------------------THHHHHHHH
T ss_pred HHHHhcCC----------Ccc--------------cH----------------------------------HHHhHHHHH
Confidence 99986421 000 00 012356789
Q ss_pred HHHHHHHHhcCCCch--HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccc
Q 005434 313 QTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVP 390 (697)
Q Consensus 313 ~~iy~~al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~ 390 (697)
+.+|+++++ +|... .+|..|..+....+ ...++.++.. ..
T Consensus 150 ~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~----~~~~~~~l~~---------------------------------~~ 191 (530)
T 2ooe_A 150 RRVYQRGCV-NPMINIEQLWRDYNKYEEGIN----IHLAKKMIED---------------------------------RS 191 (530)
T ss_dssp HHHHHHHTT-SCCTTHHHHHHHHHHHHHHHC----HHHHHHHHHT---------------------------------TH
T ss_pred HHHHHHHHh-chhhhHHHHHHHHHHHHHhhc----hhHHHHHHHH---------------------------------hh
Confidence 999999999 66532 34444333222111 1122222110 12
Q ss_pred hHHHHHHHHHHH------Hhhc----CC-c--------hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHH
Q 005434 391 SQMQKAIQVYEE------ALKN----VP-S--------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451 (697)
Q Consensus 391 ~~~~~a~~vye~------al~~----~~-~--------~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~y 451 (697)
+.+..|+.+|++ +++. +| + ..+|..|+.++...... .++ ......++..+|
T Consensus 192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~-~~~---------~~~~~~~a~~~y 261 (530)
T 2ooe_A 192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR-TED---------QTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC-CSC---------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc-CCc---------chhHHHHHHHHH
Confidence 456667777665 6654 33 2 24999999998752110 001 011245788999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCC
Q 005434 452 EKAEAMGCLTEDIAHRYVTLYLQ-------LGKLD-------EARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS 517 (697)
Q Consensus 452 e~al~~~~~~~~lw~~y~~l~~~-------~~~~~-------~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~ 517 (697)
++|+..+|.++++|..|+.++.+ .|+++ +|+.++++|+...+|++..+|..++.++...|.
T Consensus 262 ~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~----- 336 (530)
T 2ooe_A 262 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK----- 336 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC-----
Confidence 99999999999999999999987 68877 899999999932689999999999999988763
Q ss_pred CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH--HHHHHHHH
Q 005434 518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS--AIINLVIQ 593 (697)
Q Consensus 518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~--~yl~~~~~ 593 (697)
.++++++|++++...| .....+|..|+.++...+ +.++.+|++|+...+. ...++. .++++. .
T Consensus 337 -----~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~-~ 403 (530)
T 2ooe_A 337 -----YEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYY-C 403 (530)
T ss_dssp -----HHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHH-H
T ss_pred -----HHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHH-H
Confidence 7999999999998544 333468999998876655 5788999999864321 112221 223322 4
Q ss_pred hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHhcC
Q 005434 594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKLG 669 (697)
Q Consensus 594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~----~lW~~y~~fE~~~G 669 (697)
.|+.++||++|+++++.+|.+..+|..|++++...| ++++||.+|++|+..++.++ .+|..|++||..+|
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC------CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999998 99999999999999876444 59999999999999
Q ss_pred ChhhHHHHHHHHHhhcCC----c--cccccCCC
Q 005434 670 TSETATAVYWRARKTLKD----S--TALTALPD 696 (697)
Q Consensus 670 ~~~~a~~vy~ral~~~~~----~--~~f~~~~~ 696 (697)
+.+.+..++.|+++.+|+ . ..|+.+|.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~ 510 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREEYEGKETALLVDRYK 510 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTC
T ss_pred CHHHHHHHHHHHHHHCchhccCchHHHHHHHHH
Confidence 999999999999999973 2 27777763
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.2e-35 Score=339.07 Aligned_cols=419 Identities=11% Similarity=0.128 Sum_probs=319.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHhh
Q 005434 144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN---VTAARALMQNGL 219 (697)
Q Consensus 144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~---~~~aR~~~~r~l 219 (697)
...|+++|..+|.|++.|..|++++.+.+ ...++.+|+++|..+|.++.+|+.|+.+|. ..++ ++.++.+|+|||
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~-~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF-DKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hhCCcchHHHHHHHHHHHH
Confidence 46789999999999999999999998876 468999999999999999999999999997 7888 999999999999
Q ss_pred hhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 220 RVCP--TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 220 ~~~p--~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
..+| .+.+||..|++|....++ ...
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~----------~~~------------------------------------------- 157 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKND----------IIT------------------------------------------- 157 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSC----------STT-------------------------------------------
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcc----------ccc-------------------------------------------
Confidence 9993 478999999998754211 000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCC----chHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHh
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEALPS----SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL 373 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~----~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~ 373 (697)
. .+.+.+.++.+|++|+..++. +..+|..|++++...+.. ..|
T Consensus 158 -~-----~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~---------------------~~~------ 204 (679)
T 4e6h_A 158 -G-----GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV---------------------NKF------ 204 (679)
T ss_dssp -T-----HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC---------------------SHH------
T ss_pred -c-----cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc---------------------CcH------
Confidence 0 001235678999999987654 456777777665443210 001
Q ss_pred hcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHH
Q 005434 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (697)
Q Consensus 374 ~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ 450 (697)
+ ..+.++.+|.+|+++|. +|.. .+|..|..|+...... .... ..+........|+..
T Consensus 205 e--------------eq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~-~a~~----~~~e~~~~y~~Ar~~ 264 (679)
T 4e6h_A 205 E--------------EQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQL-TARR----HIGELSAQYMNARSL 264 (679)
T ss_dssp H--------------HHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTT-THHH----HHHHHHHHHHHHHHH
T ss_pred H--------------HHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcc-hHHH----HHHHhhHHHHHHHHH
Confidence 1 02458899999999995 6753 4999999998763110 0000 000012234456666
Q ss_pred HHHH------HHcC-CC-------------------cHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhccCCCcH
Q 005434 451 YEKA------EAMG-CL-------------------TEDIAHRYVTLYLQLG-------KLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 451 ye~a------l~~~-~~-------------------~~~lw~~y~~l~~~~~-------~~~~A~~l~~~al~~~~P~~~ 497 (697)
|... +... |. ...+|..|++++...+ ..++++.+|++++ ..+|...
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-~~~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-QHVCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHTTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH-HHcCCCH
Confidence 6542 1111 11 1379999999998865 2345678999999 7999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCccchHHHH-HHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhh-
Q 005434 498 QLWLLRISVEIRCVTRNSFSPSKADILSIF-ELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAK- 573 (697)
Q Consensus 498 ~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~- 573 (697)
++|..|+.++...+. .+.++ ++|++|+..+|. +..||..|+.+++..+ +.++.+|++++..+..
T Consensus 344 ~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 344 EIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 45664 999999998885 4789999999988776 6899999999986421
Q ss_pred ------CCCCC---------CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434 574 ------DGGGE---------SGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDSL 637 (697)
Q Consensus 574 ------~~~~~---------~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~ 637 (697)
..+.. ....+|..|+.++.+.|++++||++|++|+.. ++....+|..++.||...+. +.
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-----d~ 486 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-----DT 486 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-----CC
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----CH
Confidence 10000 01347888999999999999999999999998 55667899999999988751 58
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 638 VNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 638 ~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
++||++|+++++.+|+++.+|+.|++||...|+.++||.+|+||+..+++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999874
No 4
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=8.8e-33 Score=307.03 Aligned_cols=393 Identities=13% Similarity=0.090 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
+.+++.+|+|++..||. ....+++.+|+|||..+| +..+|..|+.|+.......+.+|.+|++|+
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 56788999999999997 125689999999999999 789999999999754335677899999999
Q ss_pred hh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434 220 RV---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (697)
Q Consensus 220 ~~---~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (697)
.. +|.+..+|..|++|+.....
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~------------------------------------------------------- 100 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIED------------------------------------------------------- 100 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSS-------------------------------------------------------
T ss_pred HHcCCCcccHHHHHHHHHHHHhchh-------------------------------------------------------
Confidence 87 46788999999999742100
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcc
Q 005434 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~ 376 (697)
..+..+.++.||++|+. +|.. -...+|..|..|+.......+..++...
T Consensus 101 --------~~~~~~~vR~iy~rAL~-~P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~-------------------- 149 (493)
T 2uy1_A 101 --------EQTRIEKIRNGYMRALQ-TPMG--SLSELWKDFENFELELNKITGKKIVGDT-------------------- 149 (493)
T ss_dssp --------HHHHHHHHHHHHHHHHT-SCCT--THHHHHHHHHHHHHHHCHHHHHHHHHHH--------------------
T ss_pred --------hhHHHHHHHHHHHHHHh-Chhh--hHHHHHHHHHHHHHHhccccHHHHHHHH--------------------
Confidence 01245689999999998 4432 1245555555554211122233332221
Q ss_pred cCCCCCCCCcCccchHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (697)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~--~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a 454 (697)
.+.+..|+.+|+.+....+. ..+|..|++|+++.... .+ .....++++.+|++|
T Consensus 150 -------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~~----------~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 150 -------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-LG----------GRPHESRMHFIHNYI 205 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-CC----------HHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-Cc----------chhhHHHHHHHHHHH
Confidence 13456678888877765432 34999999998742100 00 012356789999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 455 l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+...|.++++|+.|+.++.+.|+++.|+.++++|+ +. |.+..+|..|+.+.. ... ..+.+.+.+...-
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~-P~~~~l~~~y~~~~e-~~~---------~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM-SDGMFLSLYYGLVMD-EEA---------VYGDLKRKYSMGE 273 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-CCSSHHHHHHHHHTT-CTH---------HHHHHHHHTC---
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC-CCcHHHHHHHHhhcc-hhH---------HHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999 66 999999998876621 000 1122211110000
Q ss_pred ----hhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC-CHHHHHHHHHHH
Q 005434 535 ----TKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-GIQQAREMYKRF 607 (697)
Q Consensus 535 ----~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~-~~~~AR~iy~~~ 607 (697)
...++.....+|..|+.++...+ +.++.+|++| . .++ ....++..++.++...+ +.++||+||+++
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-----~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-----VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-----CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-----CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 01233445689999999886655 6899999998 3 211 13445655555555555 699999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 608 i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
++.+|....+|..|+++|..++ +.++||.+|+++ .++..+|..|++||..+|+.++++.++++++..+.
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~------~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIG------DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 9998888899999999999998 899999999998 34679999999999999999999999999999885
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=6e-31 Score=296.43 Aligned_cols=406 Identities=12% Similarity=0.111 Sum_probs=309.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 146 IYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 146 iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
||++++..+|.++++|..++.+ .+.| ..+++.+|++++..+|.++.+|+.|+.++. ..|+++.|+.+|+|++..+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~-~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI-KAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTCC-
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC-
Confidence 5899999999999999999996 4445 568999999999999999999999999997 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhh
Q 005434 225 SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF 304 (697)
Q Consensus 225 ~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (697)
+..+|..|++++.... +...
T Consensus 78 ~~~lw~~~~~~~~~~~----------~~~~-------------------------------------------------- 97 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETK----------GKLP-------------------------------------------------- 97 (530)
T ss_dssp CHHHHHHHHHHHHHHT----------TTST--------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHc----------cchh--------------------------------------------------
Confidence 6889999998775421 1000
Q ss_pred hhhhhhHHHHHHHHHHhcCC---CchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC
Q 005434 305 REQGLRVLQTIYSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK 381 (697)
Q Consensus 305 ~~~~~~~a~~iy~~al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~ 381 (697)
...+.++.+|++|+..++ .+..+|..++.+..+... .. .| .
T Consensus 98 --~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~--------------------~~-~~-------~------ 141 (530)
T 2ooe_A 98 --SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA--------------------VG-SY-------A------ 141 (530)
T ss_dssp --THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC--------------------CS-ST-------T------
T ss_pred --hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC--------------------cc-cH-------H------
Confidence 012346778999887654 344566666554433210 00 01 0
Q ss_pred CCCCcCccchHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH-----
Q 005434 382 DGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK----- 453 (697)
Q Consensus 382 ~~~~~~~~~~~~~~a~~vye~al~~~~~~---~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~----- 453 (697)
..++++.|+.+|+++++ +|.. .+|..|..|+...... ..... .....+....|+.+|..
T Consensus 142 -------~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~-~~~~~----l~~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 142 -------ENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH-LAKKM----IEDRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp -------HHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH-HHHHH----HHTTHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh-HHHHH----HHHhhHHHHHHHHHHHHHHHHH
Confidence 14789999999999999 6653 4899999987643100 00000 00013445667777665
Q ss_pred -HHHc-----CCCc-------HHHHHHHHHHHHhcC----CH----HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH---
Q 005434 454 -AEAM-----GCLT-------EDIAHRYVTLYLQLG----KL----DEARKLAAKLCSGKLSDSVQLWLLRISVEIR--- 509 (697)
Q Consensus 454 -al~~-----~~~~-------~~lw~~y~~l~~~~~----~~----~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~--- 509 (697)
++.. .|.. ..+|..|+.++...+ +. .++..++++++ ..+|.+.++|..++.+...
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al-~~~p~~~~~w~~~~~~~~~~~~ 287 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL-LVLGHHPDIWYEAAQYLEQSSK 287 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhch
Confidence 4432 2221 479999999987642 32 47778999999 7899999999999999875
Q ss_pred ----hcccCCCCCCccchH-------HHHHHHHHHHh-hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434 510 ----CVTRNSFSPSKADIL-------SIFELLKCILT-KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG 575 (697)
Q Consensus 510 ----~~~~~~~~~~~~~~~-------~~~~~f~~al~-~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~ 575 (697)
.| +++ .++++|++|++ ..|. +..+|..|+.++...+ +.++.+|++++... +..
T Consensus 288 ~~~~~g----------~~~~a~~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 354 (530)
T 2ooe_A 288 LLAEKG----------DMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DID 354 (530)
T ss_dssp HHHTTT----------CCHHHHHHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSC
T ss_pred hhhhcc----------chhhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccC
Confidence 23 344 88999999997 4553 5789999999887766 68999999998742 110
Q ss_pred CCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-cCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDSLVNARKLFESALATYDQN 654 (697)
Q Consensus 576 ~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~-~~~~~~~~~~~raR~lye~al~~~~~~ 654 (697)
...+|..|+.++.+.|++++||++|++++..+|....++...+.++.. .| +.++||++|++++..+|++
T Consensus 355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~------~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHTTC
T ss_pred ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHCCCC
Confidence 124678888888899999999999999999988887877777777643 55 8999999999999999999
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 655 TSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 655 ~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+.+|..|++||...|+.++|+.+|+||+...+.
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 999999999999999999999999999998653
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.97 E-value=9.4e-30 Score=282.67 Aligned_cols=393 Identities=15% Similarity=0.185 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHh---CCCCHHHHHHHHHHHHH---hcCCHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRF---HPKVPGVWIYAAAWEFD---HNLNVTAA 211 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~---~p~~~~lW~~~a~~e~~---~~~~~~~a 211 (697)
..+++.||+|||...| ++++|..|++|+.+.+ ...++.+|++|+.. +|.++.+|..|+.|+.. .+++++.+
T Consensus 30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 5678899999999999 9999999999999876 35789999999986 68899999999999731 35689999
Q ss_pred HHHHHHhhhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC
Q 005434 212 RALMQNGLRVCPT--SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG 289 (697)
Q Consensus 212 R~~~~r~l~~~p~--~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 289 (697)
|.+|+|||. .|. ...+|..|..||...+. ..+.+ ++..
T Consensus 109 R~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~-~~~~~-~~~~------------------------------------- 148 (493)
T 2uy1_A 109 RNGYMRALQ-TPMGSLSELWKDFENFELELNK-ITGKK-IVGD------------------------------------- 148 (493)
T ss_dssp HHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCH-HHHHH-HHHH-------------------------------------
T ss_pred HHHHHHHHh-ChhhhHHHHHHHHHHHHHHhcc-ccHHH-HHHH-------------------------------------
Confidence 999999999 464 35899999999976432 11111 1000
Q ss_pred CCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCC-chHHHHHHHHHHHHccccCc----HHHHHHHHHHHHhhCCCCh
Q 005434 290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS-SFNLRQRFFEIVEATNLAQS----DDMHDKILSDMQRDFLVDP 364 (697)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~-~~~~~~~~~~~~~~fe~~~~----~~~~~~il~~~~~~~p~~~ 364 (697)
..+.+..|+.+|+.+....+. +.++|..++++....+.+.. ...+..++++++..+|..+
T Consensus 149 ---------------~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 149 ---------------TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ---------------HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 012456778888887765443 56788888887654322111 2456778999999999999
Q ss_pred hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (697)
Q Consensus 365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (697)
.+|+.+|+++.. .+.++.|+.+|++|+.. |.+. +|..|+.+.+. ...
T Consensus 214 ~lW~~ya~~~~~-------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~------------------~~~ 261 (493)
T 2uy1_A 214 EVYFFYSEYLIG-------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE------------------EAV 261 (493)
T ss_dssp HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC------------------THH
T ss_pred HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch------------------hHH
Confidence 999999998865 36789999999999999 8765 88888776320 001
Q ss_pred HHHHHHHH---HH---HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCC
Q 005434 444 ISHLLTVY---EK---AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS 517 (697)
Q Consensus 444 ~~~ar~~y---e~---al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~ 517 (697)
.+++...| +. .....+....+|+.|++++.+.++.+.|+.++++| ..+ +.+..+|..++.++...+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~----- 334 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG----- 334 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC-----
Confidence 11111111 00 00001113578888988888888888888888888 222 2356788888877776653
Q ss_pred CCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCH
Q 005434 518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (697)
Q Consensus 518 ~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~ 597 (697)
+.+.++.+|+.+++..|. ...+|..|+++ +...|+.
T Consensus 335 ----d~~~ar~ife~al~~~~~--~~~~~~~yid~--------------------------------------e~~~~~~ 370 (493)
T 2uy1_A 335 ----SRATPYNIFSSGLLKHPD--STLLKEEFFLF--------------------------------------LLRIGDE 370 (493)
T ss_dssp ----CSHHHHHHHHHHHHHCTT--CHHHHHHHHHH--------------------------------------HHHHTCH
T ss_pred ----ChHHHHHHHHHHHHHCCC--CHHHHHHHHHH--------------------------------------HHHcCCH
Confidence 468888888888887653 34566665543 3345788
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC----CCc-hHHHHHHHHHHhcCChh
Q 005434 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD----QNT-SLWRDYYSTETKLGTSE 672 (697)
Q Consensus 598 ~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~----~~~-~lW~~y~~fE~~~G~~~ 672 (697)
++||.+|+++. .+..+|..|++||...| +.+.+|++|++++.... .++ .+-..|.+||..+|+.+
T Consensus 371 ~~aR~l~er~~----k~~~lw~~~~~fE~~~G------~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~ 440 (493)
T 2uy1_A 371 ENARALFKRLE----KTSRMWDSMIEYEFMVG------SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYH 440 (493)
T ss_dssp HHHHHHHHHSC----CBHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHH
Confidence 99999999983 36789999999999999 89999999999997543 222 45588889999999998
Q ss_pred hHHHHHHHH
Q 005434 673 TATAVYWRA 681 (697)
Q Consensus 673 ~a~~vy~ra 681 (697)
....-|...
T Consensus 441 ~~~~~~~~~ 449 (493)
T 2uy1_A 441 CFLDSFNFL 449 (493)
T ss_dssp HHHHHHCBT
T ss_pred HHHHHhhhh
Confidence 888877544
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.4e-18 Score=186.70 Aligned_cols=371 Identities=10% Similarity=0.048 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|......+...+ ...+...+++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus 15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 556778899999999999999999888887776 568899999999999999999999999886 789999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
++..|+....|...+......
T Consensus 94 l~~~p~~~~~~~~l~~~~~~~----------------------------------------------------------- 114 (388)
T 1w3b_A 94 LRLKPDFIDGYINLAAALVAA----------------------------------------------------------- 114 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred HHcCcchHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999877776655443221
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
++.+.|...|+++++..|+....+..+-.++...+ ..+.+...++++++..|+++..|..++..+..
T Consensus 115 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-- 181 (388)
T 1w3b_A 115 --------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-- 181 (388)
T ss_dssp --------SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--
T ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 12346788899999888888777777666665433 35778888999999999999999888888764
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
.++++.|...|+++++..|+.. .|......... .+..+.+...|++++..
T Consensus 182 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 182 -----------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALSL 232 (388)
T ss_dssp -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence 4778899999999998877643 33322222211 24467888899999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+|.++.+|...+..+...|++++|...+++++ ...|++...|..........| +.+++.+.|++++...
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG----------SVAEAEDCYNTALRLC 301 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999 788888888888887777666 3688888888888776
Q ss_pred ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434 538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL 617 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~ 617 (697)
|.. ...|... .......|++++|...|++++...|.....
T Consensus 302 p~~--~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 302 PTH--ADSLNNL--------------------------------------ANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp TTC--HHHHHHH--------------------------------------HHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred ccc--HHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 543 2223211 111234678899999999999988888888
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcC
Q 005434 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLG 669 (697)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G 669 (697)
+...+.+....| +.+.|..+|++++...|+.++.|..........|
T Consensus 342 ~~~l~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 342 HSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888877787 8899999999999988888888777666554444
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.6e-20 Score=192.33 Aligned_cols=244 Identities=14% Similarity=0.141 Sum_probs=197.2
Q ss_pred hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-------cCCH-----
Q 005434 411 MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-------LGKL----- 478 (697)
Q Consensus 411 ~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~-------~~~~----- 478 (697)
.+|..|++|+++... ..++ .....+++..+|++|+..+|.++++|..|+.++.. .|++
T Consensus 9 ~~W~~yi~~E~~~~~-~~~~---------~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~ 78 (308)
T 2ond_A 9 DMWKKYIQWEKSNPL-RTED---------QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHTCTT-CCCC---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHhCcc-cCCc---------hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence 499999999876210 0011 01123789999999999999999999999999874 4875
Q ss_pred --HHHHHHHHHHhhc-cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Q 005434 479 --DEARKLAAKLCSG-KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN 555 (697)
Q Consensus 479 --~~A~~l~~~al~~-~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~ 555 (697)
++|+.++++|+ . ..|++..+|..++.++...+ +.++++++|+++++..| .....+|..|+.++..
T Consensus 79 ~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 79 FSDEAANIYERAI-STLLKKNMLLYFAYADYEESRM----------KYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHH
Confidence 89999999999 6 58999999999999998876 37999999999998544 3323389999988766
Q ss_pred hh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCC
Q 005434 556 QK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ-KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG 632 (697)
Q Consensus 556 ~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~-~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~ 632 (697)
.+ +.++.+|++|+...+. ...++..++..... .|++++|+++|++++...|.+..+|..++.++..+|
T Consensus 147 ~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--- 217 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN--- 217 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred hcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---
Confidence 55 6788999999864221 22333322222222 599999999999999999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHhhC--C--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 633 DKDSLVNARKLFESALATY--D--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 633 ~~~~~~raR~lye~al~~~--~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
++++||.+|++++..+ + ....+|..|+.||..+|+.+.|..++.||++.+|++
T Consensus 218 ---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 218 ---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp ---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999963 3 366899999999999999999999999999999875
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.3e-18 Score=197.81 Aligned_cols=286 Identities=10% Similarity=-0.009 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~ 424 (697)
.+.+..+++.+.+. |.+...|..++..+.. .++++.|..+|+++++..|... .|...+.....
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 351 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFV-------------RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE-- 351 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--
Confidence 34566667766665 6778889999888875 4789999999999998776543 56655555443
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (697)
.+..+.+..+|++++..+|.+...|...+.++.+.|++++|.+++++++ ...|.+...|...+
T Consensus 352 ----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 352 ----------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS-TMDPQFGPAWIGFA 414 (597)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred ----------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence 3457889999999998889999999999999999999999999999999 68899999999988
Q ss_pred HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS 582 (697)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~ 582 (697)
......| +.+++.++|++++...|.. ...|...+..+...+ +.+..+|++++...+. ...
T Consensus 415 ~~~~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 476 (597)
T 2xpi_A 415 HSFAIEG----------EHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPL 476 (597)
T ss_dssp HHHHHHT----------CHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHH
T ss_pred HHHHHcC----------CHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChH
Confidence 8888776 3788999999998776643 345555554444433 6788888888764321 233
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhC------CCCC-HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 583 LPSAIINLVIQKDGIQQAREMYKRFLAL------PRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 583 l~~~yl~~~~~~~~~~~AR~iy~~~i~~------~p~~-~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
.+...+..+.+.|.+++|.++|++++.. .|.. ...|...+......| +.+.|..+|++++...|.++
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK------MYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhCCCCh
Confidence 4445556667889999999999999886 3333 567888888888888 89999999999999988889
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 656 SLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 656 ~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
.+|...+..-...|+.+.|..+|+++++.-|+.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999887765
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=7e-18 Score=181.11 Aligned_cols=360 Identities=13% Similarity=0.043 Sum_probs=289.6
Q ss_pred Hhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005434 170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248 (697)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~ 248 (697)
+.| +..+...|.+++..+|+++..|...+.... ..|+.+.|...++++++.+|.+...|..........
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~--------- 80 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------- 80 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC---------
Confidence 345 568899999999999999999999999886 789999999999999999999888887776544321
Q ss_pred HhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchH
Q 005434 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN 328 (697)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~ 328 (697)
+.++.|...|+++++..|++..
T Consensus 81 ----------------------------------------------------------g~~~~A~~~~~~al~~~p~~~~ 102 (388)
T 1w3b_A 81 ----------------------------------------------------------GQLQEAIEHYRHALRLKPDFID 102 (388)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHcCcchHH
Confidence 1345788899999988888877
Q ss_pred HHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC
Q 005434 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (697)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~ 408 (697)
.+..+...+...+. .+.+...++++++..|+....|..++..+.. .++++.|...|+++++..|
T Consensus 103 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 103 GYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCC
Confidence 77777666655442 3567888888999999999889888888764 4778999999999998877
Q ss_pred chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (697)
Q Consensus 409 ~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~ 487 (697)
... .|......... .+..+.|...|++++..+|.+...|...+..+...|++++|...+++
T Consensus 167 ~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNA------------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp TCHHHHHHHHHHHHT------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 643 44433332221 35578899999999999999999999999999999999999999999
Q ss_pred HhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005434 488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA 567 (697)
Q Consensus 488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a 567 (697)
++ ...|++...|..........+ +.+.+.+.|++++...|.. ...|...
T Consensus 229 al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~--~~~~~~l------------------ 277 (388)
T 1w3b_A 229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--PDAYCNL------------------ 277 (388)
T ss_dssp HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--HHHHHHH------------------
T ss_pred HH-hhCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC--HHHHHHH------------------
Confidence 99 788988888888777776665 3678888888888765532 2222211
Q ss_pred HHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434 568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647 (697)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a 647 (697)
...+...|++++|...|++++...|.+...+...+.+....+ +.+.|..+|+++
T Consensus 278 --------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~a 331 (388)
T 1w3b_A 278 --------------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA 331 (388)
T ss_dssp --------------------HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred --------------------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 122345689999999999999999999999888888888888 899999999999
Q ss_pred HhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 648 LATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 648 l~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
+...|.++..|...+..-...|+.+.|...|+++++.-|+.
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99988889999999999999999999999999999876544
No 11
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.9e-19 Score=187.70 Aligned_cols=247 Identities=13% Similarity=0.202 Sum_probs=193.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccch-hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005434 90 PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDF-SGVARILEIYRLAVMRFKGDIELWFKYMEFC 168 (697)
Q Consensus 90 ~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~iyeral~~~p~~~~lW~~y~~~~ 168 (697)
.+..-|.+||+||.+. +....+. ...+++..+|++++..+|++.++|..|+.++
T Consensus 6 ~~~~~W~~yi~~E~~~-------------------------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~ 60 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSN-------------------------PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYL 60 (308)
T ss_dssp HHHHHHHHHHHHHHTC-------------------------TTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-------------------------cccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567899999998531 0011111 2347899999999999999999999999998
Q ss_pred HH-------hcC--------chHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHH-HHHH
Q 005434 169 RQ-------RKN--------GRMKKVLAQVIR-FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVE 231 (697)
Q Consensus 169 ~~-------~~~--------~~~~~~~~ral~-~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~-lW~~ 231 (697)
.. .|. ..++.+|++|+. .+|+++.+|+.++.++. ..|+++.|+.+|+++++..|.+.. +|..
T Consensus 61 ~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 139 (308)
T 2ond_A 61 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHH
T ss_pred HHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHH
Confidence 64 243 579999999999 69999999999999995 899999999999999999998876 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhH
Q 005434 232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV 311 (697)
Q Consensus 232 y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (697)
|+.++...+ +.+.
T Consensus 140 ~~~~~~~~~-------------------------------------------------------------------~~~~ 152 (308)
T 2ond_A 140 YMKFARRAE-------------------------------------------------------------------GIKS 152 (308)
T ss_dssp HHHHHHHHH-------------------------------------------------------------------CHHH
T ss_pred HHHHHHHhc-------------------------------------------------------------------CHHH
Confidence 998876432 2346
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (697)
Q Consensus 312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~ 391 (697)
|+.+|++|++..|.+..+| ...+..+... .+
T Consensus 153 A~~~~~~a~~~~p~~~~~~-------------------------------------~~~a~~~~~~------------~~ 183 (308)
T 2ond_A 153 GRMIFKKAREDARTRHHVY-------------------------------------VTAALMEYYC------------SK 183 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHH-------------------------------------HHHHHHHHHT------------SC
T ss_pred HHHHHHHHHhcCCCCHHHH-------------------------------------HHHHHHHHHH------------cC
Confidence 7888888887666543333 2222332110 25
Q ss_pred HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---CC-CcHHHHH
Q 005434 392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---GC-LTEDIAH 466 (697)
Q Consensus 392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~---~~-~~~~lw~ 466 (697)
+.+.|+.+|++|++..|... +|..|+.++.. .+..++|+.+|++|+.. +| ....+|.
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH------------------LNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 68889999999999888654 88888888754 24578999999999996 34 3678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (697)
.|+.++...|+.++|..++++++ ..+|++.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~-~~~p~~~ 275 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRF-TAFREEY 275 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH-HHTTTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHccccc
Confidence 99999999999999999999999 7888743
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.1e-17 Score=186.31 Aligned_cols=436 Identities=11% Similarity=-0.054 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------------------PGVWIYAAA 199 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~-------------------~~lW~~~a~ 199 (697)
...+..+|++++. .|.+...|...+....+.| ...+..+|++ ..|.. +..|...+.
T Consensus 133 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 133 YARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp HHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHH
Confidence 4566778887754 4788999999998888777 4678888886 34554 788999988
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCC
Q 005434 200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279 (697)
Q Consensus 200 ~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 279 (697)
... ..|+++.|+.+|+++++..|.+...|...+.+..............+.... ..+.++. .....|. .
T Consensus 209 ~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~--------~ 277 (597)
T 2xpi_A 209 VYT-NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDAA-FLRSLYM--------L 277 (597)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHH-HHGGGHH-HHHHHHH--------T
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcc-cccchHH-HHHHHHH--------H
Confidence 885 789999999999999999999888888776543221111110000000000 0000000 0000000 0
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhh
Q 005434 280 LDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD 359 (697)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~ 359 (697)
. .......++++.|..+|+.+++. |.+...|..+...+...+ ..+.+..+++++++.
T Consensus 278 ~-------------------~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 278 K-------------------LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS---RFIDVLAITTKILEI 334 (597)
T ss_dssp T-------------------SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred H-------------------HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHc
Confidence 0 00011223567899999998876 667788888888776654 357889999999999
Q ss_pred CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCc
Q 005434 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS 438 (697)
Q Consensus 360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~ 438 (697)
.|++...|..++..+.. .++.+.|..+|+++++..|... .|...+.....
T Consensus 335 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 385 (597)
T 2xpi_A 335 DPYNLDVYPLHLASLHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC---------------- 385 (597)
T ss_dssp CTTCCTTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH----------------
T ss_pred CcccHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----------------
Confidence 99999999999888865 5789999999999998777643 55554444332
Q ss_pred hhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (697)
Q Consensus 439 ~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~ 518 (697)
.+..+.|...|++++..+|.+...|...+..+.+.|++++|.+++++++ ...|++...|...+......|
T Consensus 386 --~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g------- 455 (597)
T 2xpi_A 386 --VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLG------- 455 (597)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHT-------
T ss_pred --hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC-------
Confidence 3568899999999999999999999999999999999999999999999 788999999999888887776
Q ss_pred CccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC-CChHHHHHHHHHHhC
Q 005434 519 SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG-FSLPSAIINLVIQKD 595 (697)
Q Consensus 519 ~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~-~~l~~~yl~~~~~~~ 595 (697)
+++++.++|++++...|.. ...|...+..+...+ +.+..+|++++...+.....+.. ..++......+...|
T Consensus 456 ---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 456 ---NILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp ---CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 4789999999999876643 456766666555554 67888899988764332111011 234444556677899
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005434 596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (697)
Q Consensus 596 ~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~ 663 (697)
++++|..+|++++...|.+...|...+.+....| +.+.|...|+++++..|.++..|.....
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK------IPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999999999999989999999998888888 8999999999999999988877766543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=1.2e-15 Score=166.64 Aligned_cols=260 Identities=10% Similarity=-0.006 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
..+..++...|.+...|...+......| +..+..+|++++..+|.++..|...+.... ..|+.+.|...|++++...|
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 5667778899999999999999888877 578999999999999999999999999886 79999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhh
Q 005434 224 TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDL 303 (697)
Q Consensus 224 ~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (697)
.+...|...+......
T Consensus 92 ~~~~~~~~l~~~~~~~---------------------------------------------------------------- 107 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQ---------------------------------------------------------------- 107 (450)
T ss_dssp TCHHHHHHHHHHHHHT----------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHc----------------------------------------------------------------
Confidence 9877776665443221
Q ss_pred hhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCC
Q 005434 304 FREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380 (697)
Q Consensus 304 ~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~ 380 (697)
+..+.|..+|+++++..|++. ..+..+...+.. ..+...|..+..
T Consensus 108 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------~~~~~~a~~~~~---- 155 (450)
T 2y4t_A 108 ---GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------------QRLRSQALNAFG---- 155 (450)
T ss_dssp ---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH----
T ss_pred ---CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH----
Confidence 134578889999998888765 454444332211 112223333332
Q ss_pred CCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC
Q 005434 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC 459 (697)
Q Consensus 381 ~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~ 459 (697)
.++++.|...|+++++..|... .+......... .+..+.|...|++++..+|
T Consensus 156 ---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~ 208 (450)
T 2y4t_A 156 ---------SGDYTAAIAFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKN 208 (450)
T ss_dssp ---------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCGGGGHHHHHHHHHHHC
T ss_pred ---------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCC
Confidence 3678999999999998877654 44444433332 2446789999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH------------HHHHHHhcccCCCCCCccchHHHH
Q 005434 460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR------------ISVEIRCVTRNSFSPSKADILSIF 527 (697)
Q Consensus 460 ~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~------------i~l~~~~~~~~~~~~~~~~~~~~~ 527 (697)
.++..|...+..+...|++++|...+++++ ...|++...|..+ .......+ +.+++.
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~A~ 277 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDAT 277 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT----------CHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHH
Confidence 999999999999999999999999999999 7889988888765 33333333 367777
Q ss_pred HHHHHHHhhcCh
Q 005434 528 ELLKCILTKVSA 539 (697)
Q Consensus 528 ~~f~~al~~~p~ 539 (697)
+.|++++...|.
T Consensus 278 ~~~~~~l~~~p~ 289 (450)
T 2y4t_A 278 SKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHhcCCc
Confidence 777777775553
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-15 Score=167.58 Aligned_cols=275 Identities=9% Similarity=-0.033 Sum_probs=208.5
Q ss_pred CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhh-----c--CCchh--------HHHHHHHHHHHHhc
Q 005434 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALK-----N--VPSSM--------IFDLYTKFLMDMIA 425 (697)
Q Consensus 361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~-----~--~~~~~--------lw~~yi~~~~~~~~ 425 (697)
|+++..|...+...+... ..++++.|...|+++++ . .|... .|........
T Consensus 183 ~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 248 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKR----------SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF---- 248 (514)
T ss_dssp SCHHHHHHHHHHHHHSSC----------CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH----
T ss_pred CcHHHHHHHHHHHHHHhh----------hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH----
Confidence 333555666665543200 14789999999999998 3 33221 2222222111
Q ss_pred CCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
..+..+.|...|++++..+|. ...|...+..+...|++++|...+++++ ...|.+...|.....
T Consensus 249 --------------~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 249 --------------LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL-KLDSNNSSVYYHRGQ 312 (514)
T ss_dssp --------------HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH-TTCTTCTHHHHHHHH
T ss_pred --------------HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh-hcCcCCHHHHHHHHH
Confidence 135588999999999999999 9999999999999999999999999999 788999999988888
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCCh
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSL 583 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l 583 (697)
+....+. .+.+...|++++...|.. ...|...+..+...+ +.+...|++++...+. ....
T Consensus 313 ~~~~~~~----------~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~ 374 (514)
T 2gw1_A 313 MNFILQN----------YDQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEV 374 (514)
T ss_dssp HHHHTTC----------TTHHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHH
T ss_pred HHHHhCC----------HHHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHH
Confidence 8777663 688889999999876643 345555454444433 5677888888865322 2344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHhc---cCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434 584 PSAIINLVIQKDGIQQAREMYKRFLALPRPGLV------LYQNCIELENN---LASVGDKDSLVNARKLFESALATYDQN 654 (697)
Q Consensus 584 ~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~------~~~~~i~lE~~---~~~~~~~~~~~raR~lye~al~~~~~~ 654 (697)
+..........|++++|...|++++...|.... .+...+.+... .+ +.+.|...|++++...|.+
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE------NFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT------HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC------CHHHHHHHHHHHHHhCccc
Confidence 445555667889999999999999997666533 67777777777 77 8999999999999999988
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 655 TSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 655 ~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
+..|...+......|+.+.|...|++++...++..
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999999999887653
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.76 E-value=4.4e-15 Score=165.93 Aligned_cols=410 Identities=9% Similarity=0.009 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E 236 (697)
...|...+....+.| +..+...|++++..+|+++.+|...+...+ ..|+.+.|...|++++...|++...|...+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 455566666666666 567888888888888888888888888775 678888888888888888888888888777776
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHH
Q 005434 237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY 316 (697)
Q Consensus 237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy 316 (697)
...+....+...+ . ... .+|. ....+ ....+.......+..+|
T Consensus 104 ~~~g~~~~A~~~~-~-~~~---~~~~--~~~~~------------------------------~~~~~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 104 ESLGNFTDAMFDL-S-VLS---LNGD--FDGAS------------------------------IEPMLERNLNKQAMKVL 146 (537)
T ss_dssp HHHTCHHHHHHHH-H-HHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHH-H-HHh---cCCC--CChHH------------------------------HHHHHHHHHHHHHHHHH
Confidence 6655444443322 1 000 0000 00000 00000111234566667
Q ss_pred HHHHhcCCC--------chH-----------------------------HHHHHHHHHHH----ccc-cCcHHHHHHHHH
Q 005434 317 SGAVEALPS--------SFN-----------------------------LRQRFFEIVEA----TNL-AQSDDMHDKILS 354 (697)
Q Consensus 317 ~~al~~~p~--------~~~-----------------------------~~~~~~~~~~~----fe~-~~~~~~~~~il~ 354 (697)
+.++...|. ... +...+..++.. +.. ......+..+++
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 766654221 100 11111111100 000 002356777889
Q ss_pred HHHhhCCCChhhHHHHH-------HhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCC
Q 005434 355 DMQRDFLVDPKYWDWLA-------RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPK 427 (697)
Q Consensus 355 ~~~~~~p~~~~~w~~~a-------~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~ 427 (697)
.+++..|+++..|..++ ..+.. .++++.|...|+++++..|+...|...... ..
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~---~~--- 287 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFL-------------KNNLLDAQVLLQESINLHPTPNSYIFLALT---LA--- 287 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHHH---TC---
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCCchHHHHHHHH---HH---
Confidence 99999999977654443 44332 467899999999999988873333322211 11
Q ss_pred cccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
..+..+.|...|++++..+|.++.+|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus 288 ------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 288 ------------DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPENVYPYIQLACLL 354 (537)
T ss_dssp ------------CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCSHHHHHHHHHH
T ss_pred ------------HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence 12457899999999999999999999999999999999999999999999 78899989998888888
Q ss_pred HHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChH-
Q 005434 508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP- 584 (697)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~- 584 (697)
...+ +.+.+.+.|++++...|.. ..+|..++..+...+ +.+...|++++...+..... ...+.
T Consensus 355 ~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~ 420 (537)
T 3fp2_A 355 YKQG----------KFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI--HVGIGP 420 (537)
T ss_dssp HHTT----------CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC--SSTTHH
T ss_pred HHcC----------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh--HHHHHH
Confidence 7766 4789999999999877643 355665555555444 57888899988765443211 12221
Q ss_pred -HHHHHHHHHh----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434 585 -SAIINLVIQK----------DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (697)
Q Consensus 585 -~~yl~~~~~~----------~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~ 653 (697)
......+... |++++|...|++++...|.+...+...+.+....| +.+.|...|++++...|+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME------KIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCC
Confidence 1112233445 89999999999999999999998888888888888 899999999999999986
Q ss_pred CchH
Q 005434 654 NTSL 657 (697)
Q Consensus 654 ~~~l 657 (697)
.++.
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 6543
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.3e-15 Score=166.91 Aligned_cols=439 Identities=10% Similarity=0.010 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...| +...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus 22 ~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 22 YDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 5678899999999999 6899999998888877 578999999999999999999999999986 899999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCC-CCCcchhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG-SQPENMES 297 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 297 (697)
+...|.+.......+..-.......... ..++...... ..+. . +........... .....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-~~~~--~------------~~~~~~~~~~~~~~~~~~--- 160 (514)
T 2gw1_A 100 SLNGDFNDASIEPMLERNLNKQAMSKLK-EKFGDIDTAT-ATPT--E------------LSTQPAKERKDKQENLPS--- 160 (514)
T ss_dssp HHSSSCCGGGTHHHHHHHHHHHHHHHHT-TC------------------------------------------CCCC---
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-Hhhh--h------------ccCChhhHHHhhccCCch---
Confidence 9999976554444433322211110000 0000000000 0000 0 000000000000 00000
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHh-----h--CC-
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEA--------LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----D--FL- 361 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~--------~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~-----~--~p- 361 (697)
...+ ..+...... -|++...+......+..+......+.+..+++++++ . .|
T Consensus 161 -----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 161 -----------VTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp -----------HHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred -----------hHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0000 000000000 022222222221111111111235667777777776 3 44
Q ss_pred ------CChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCC
Q 005434 362 ------VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSE 435 (697)
Q Consensus 362 ------~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~ 435 (697)
..+..|..++..+.. .++++.|...|+++++..|....|.........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~------------- 282 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFL-------------KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD------------- 282 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-------------
T ss_pred ccccChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-------------
Confidence 335567788887765 478999999999999988872233332222221
Q ss_pred CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCC
Q 005434 436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~ 515 (697)
.+..+.+...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|.....+....+
T Consensus 283 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~---- 352 (514)
T 2gw1_A 283 -----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDPENIFPYIQLACLAYREN---- 352 (514)
T ss_dssp -----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-HTCSSCSHHHHHHHHHTTTTT----
T ss_pred -----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhChhhHHHHHHHHHHHHHcC----
Confidence 2345678899999999999999999999999999999999999999999 788998888888777665554
Q ss_pred CCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ 593 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~ 593 (697)
+.+.+.+.|++++...|.. ...|...+..+...+ +.+...|++++...+...........+.........
T Consensus 353 ------~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 353 ------KFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp ------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 4788999999999876643 345655555444444 677888888887654332100001134444555667
Q ss_pred ---hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHH
Q 005434 594 ---KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY 661 (697)
Q Consensus 594 ---~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y 661 (697)
.|++++|...|++++...|.....+...+.+....| +.+.|...|++++...|++++.|...
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE------DIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhccccHHHHHHH
Confidence 899999999999999999988888888888888888 89999999999999999888777654
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=1.5e-14 Score=152.02 Aligned_cols=335 Identities=10% Similarity=0.019 Sum_probs=244.4
Q ss_pred CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHH
Q 005434 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (697)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~ 235 (697)
+++.|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|++...|...+.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4677888888777777 578999999999999999999999999886 78999999999999999999888777666544
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHH
Q 005434 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI 315 (697)
Q Consensus 236 E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 315 (697)
.... ++.+.|...
T Consensus 81 ~~~~-------------------------------------------------------------------~~~~~A~~~ 93 (359)
T 3ieg_A 81 LLKQ-------------------------------------------------------------------GKLDEAEDD 93 (359)
T ss_dssp HHHH-------------------------------------------------------------------TCHHHHHHH
T ss_pred HHHc-------------------------------------------------------------------CChHHHHHH
Confidence 3321 124567888
Q ss_pred HHHHHhcCC---CchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434 316 YSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (697)
Q Consensus 316 y~~al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~ 392 (697)
|+++++..| ++...+..+..+.. ...+...|..+.. .++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~-------------~~~ 135 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD-------------GAD 135 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------TTC
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------ccC
Confidence 888888877 55444333221110 1123334455443 477
Q ss_pred HHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005434 393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL 471 (697)
Q Consensus 393 ~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l 471 (697)
++.|...|+++++..|... .|......... .+..+.|...|++++..+|.++..|...+..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999888654 44333333222 3557899999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH------------HHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434 472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV------------EIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l------------~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
+...|++++|...+++++ ...|++...|..+..+ ....+ +.+++.+.|++++...|.
T Consensus 198 ~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 7889988877655332 22222 356666667776665543
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434 540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ 619 (697)
Q Consensus 540 ~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~ 619 (697)
. ..+|... ...........|++++|...|++++...|.+...+.
T Consensus 267 ~--~~~~~~~----------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 267 V--AEYTVRS----------------------------------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp S--HHHHHHH----------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred c--hHHHHHH----------------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 2 1111110 001122234578899999999999998888888888
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhc
Q 005434 620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKL 668 (697)
Q Consensus 620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~ 668 (697)
..+.+....| +.+.|...|+++++..|+++.+|..........
T Consensus 311 ~~~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 311 DRAEAYLIEE------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8888888888 889999999999999888888888777665543
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=2.9e-14 Score=159.32 Aligned_cols=414 Identities=12% Similarity=0.028 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+...|++++...|++...|...+......| +..+...|++++..+|+++..|...+.... ..|+.+.|...|+ ++
T Consensus 42 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~-~~ 119 (537)
T 3fp2_A 42 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE-SLGNFTDAMFDLS-VL 119 (537)
T ss_dssp C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HcCCHHHHHHHHH-HH
Confidence 35668999999999999999999999888877 578999999999999999999999999986 7999999999995 99
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccc----------chhhHhhhhhccccCCCCCCCCCCCC
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVR-DHR----------DADEKRWINENKGLFMPLDGEVENTD 288 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~-~~~----------~~~~~~w~~~~~~~~~~~~~~~~~~~ 288 (697)
...|+....|....--..........-...++..+...+. .|. ....... . .+.... ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~ 190 (537)
T 3fp2_A 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-S-------SVNTSS-NYD 190 (537)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-H-------TSCCCC-SSC
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-H-------HHhhcc-ccc
Confidence 9988765554332111111111111111122210000000 000 0000000 0 000000 000
Q ss_pred CCCCcchhhhhhhhh--------h--hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHcc----ccCcHHHHHHHHH
Q 005434 289 GSQPENMESQKSVDL--------F--REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN----LAQSDDMHDKILS 354 (697)
Q Consensus 289 ~~~~~~~~~~~~~~~--------~--~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe----~~~~~~~~~~il~ 354 (697)
. ....+...... + ....++.|..+|+++++..|++.+.+..+...+...+ .....+.+...++
T Consensus 191 ~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 191 T---AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp S---SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0 00000000000 0 1124678999999999988988766544433332211 1124578889999
Q ss_pred HHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC
Q 005434 355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD 433 (697)
Q Consensus 355 ~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~ 433 (697)
.+++..|+ +..|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 268 ~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 322 (537)
T 3fp2_A 268 ESINLHPT-PNSYIFLALTLAD-------------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----------- 322 (537)
T ss_dssp HHHHHCCC-HHHHHHHHHHTCC-------------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------
T ss_pred HHHhcCCC-chHHHHHHHHHHH-------------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-----------
Confidence 99999999 8889999998865 4778999999999999888653 44444433332
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434 434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (697)
Q Consensus 434 ~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (697)
.+..+.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|++..+|.....+....+
T Consensus 323 -------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-- 392 (537)
T 3fp2_A 323 -------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK-LKFPTLPEVPTFFAEILTDRG-- 392 (537)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT--
T ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhC--
Confidence 3558899999999999999999999999999999999999999999999 789999999998888887766
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhh----------h--HHHHHHHHHHHHhhhhCCCC
Q 005434 514 NSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQ----------K--HYFDKLVEIALISVAKDGGG 577 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~----------~--~~~~~l~~~a~~~~~~~~~~ 577 (697)
+.+.+.+.|++++...|... ....+...+..+... + +.+...|++++...+.
T Consensus 393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---- 460 (537)
T 3fp2_A 393 --------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR---- 460 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT----
T ss_pred --------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC----
Confidence 47889999999998654322 111111112222222 3 5677888888764321
Q ss_pred CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434 578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL 617 (697)
Q Consensus 578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~ 617 (697)
....+..........|++++|...|++++...|.....
T Consensus 461 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 461 --SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred --CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 23334444555678899999999999999998877654
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=1.2e-13 Score=145.07 Aligned_cols=311 Identities=11% Similarity=0.011 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|...+......| +..+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999986 789999999999999
Q ss_pred hhhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434 219 LRVCP---TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (697)
Q Consensus 219 l~~~p---~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (697)
+...| ++...|..+..+.........+.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------------- 128 (359)
T 3ieg_A 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQAL------------------------------------------------- 128 (359)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HhcCCcccChHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 99999 77788877765543221111000
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM 375 (697)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l 375 (697)
.....++.+.|..+|+++++..|.+...+..+...+...+ ..+.+...++.+++..|+++..|..++..+.
T Consensus 129 ------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 129 ------DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred ------HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 0011124578999999999999998888877777666543 4578899999999999999999999999987
Q ss_pred ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHH-------HHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL-------MDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
. .++++.|...|+++++..|+.. .|..|.... ..... ...+..+.|
T Consensus 200 ~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------------~~~~~~~~A 253 (359)
T 3ieg_A 200 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL-------------IRDGRYTDA 253 (359)
T ss_dssp H-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-------------HHTTCHHHH
T ss_pred H-------------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH-------------HHcCCHHHH
Confidence 5 5789999999999999888764 444443221 00000 023568899
Q ss_pred HHHHHHHHHcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccch
Q 005434 448 LTVYEKAEAMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI 523 (697)
Q Consensus 448 r~~ye~al~~~~~~~~l----w~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~ 523 (697)
...|++++...|.++.. +...+..+...|++++|...+++++ ...|++...|.....+....| +.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~ 322 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNVNALKDRAEAYLIEE----------MY 322 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CH
Confidence 99999999999988754 5567888999999999999999999 789999999999998888776 47
Q ss_pred HHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 524 LSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 524 ~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
+++.+.|+++++..|.. ..+|..
T Consensus 323 ~~A~~~~~~a~~~~p~~--~~~~~~ 345 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNEND--QQIREG 345 (359)
T ss_dssp HHHHHHHHHHHTTCTTC--HHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--hHHHHH
Confidence 89999999999877643 345543
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.69 E-value=1.5e-13 Score=149.85 Aligned_cols=315 Identities=11% Similarity=0.026 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+..+|++++...|++...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999986 799999999999999
Q ss_pred hhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcch
Q 005434 219 LRVCPTSE---ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (697)
Q Consensus 219 l~~~p~~~---~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (697)
+...|.+. ..|...+...........+.
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------------- 151 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQAL------------------------------------------------- 151 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 99999988 88877766643221110000
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM 375 (697)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l 375 (697)
..+..++++.|..+|+++++..|.+...+..+..++...+ ..+.+..+++++++..|+++..|..++..+.
T Consensus 152 ------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 152 ------NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp ------HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 0111234678999999999999998888888877776654 3467888899999999999999999999887
Q ss_pred ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHH--HHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (697)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye 452 (697)
. .++++.|...|+++++..|... .|..+..... ..... .. .-...+..+.|...|+
T Consensus 223 ~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 223 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES--AE------ELIRDGRYTDATSKYE 281 (450)
T ss_dssp H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH--HH------HHHHHTCHHHHHHHHH
T ss_pred H-------------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH--HH------HHHHcCCHHHHHHHHH
Confidence 5 4789999999999999888654 4443311100 00000 00 0002356889999999
Q ss_pred HHHHcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHH
Q 005434 453 KAEAMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (697)
Q Consensus 453 ~al~~~~~~~~----lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 528 (697)
+++...|.++. +|...+.++.+.|++++|...+++++ ...|++...|..........+ +.+.+.+
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~ 350 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAIQ 350 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhc----------CHHHHHH
Confidence 99999998754 67888999999999999999999999 788999999999888887776 4789999
Q ss_pred HHHHHHhhcChhhhHHHHH
Q 005434 529 LLKCILTKVSALESESLWL 547 (697)
Q Consensus 529 ~f~~al~~~p~~~~~~lW~ 547 (697)
.|+++++..|.. ..+|.
T Consensus 351 ~~~~al~~~p~~--~~~~~ 367 (450)
T 2y4t_A 351 DYETAQEHNEND--QQIRE 367 (450)
T ss_dssp HHHHHHTTSSSC--HHHHH
T ss_pred HHHHHHHhCcch--HHHHH
Confidence 999999876643 34444
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.8e-13 Score=138.85 Aligned_cols=265 Identities=9% Similarity=0.012 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQN 217 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r 217 (697)
...+..+|++++...|.+...|..++..+...| ...+...|++++..+|.++..|...+.... ..| +.+.|...|++
T Consensus 38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSK 116 (330)
T ss_dssp HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Confidence 566788999999999999999998888877776 578999999999999999999999999886 678 99999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
++...|.....|...+.+....
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~---------------------------------------------------------- 138 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVE---------------------------------------------------------- 138 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred HHHhCCccHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 9999999888887766544321
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~ 377 (697)
++.+.|...|+++++..|.+...+..+...+...+ ..+.+...++++++..|+++..|..++..+..
T Consensus 139 ---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 205 (330)
T 3hym_B 139 ---------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN---NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ- 205 (330)
T ss_dssp ---------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred ---------cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Confidence 13457888999999988887666666655554433 45789999999999999999999999998875
Q ss_pred CCCCCCCCcCccchHHHHHHHHHHHHhhcCC---------c-hhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---------S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~---------~-~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
.++++.|...|+++++..+ . ...|......... .+..+.|
T Consensus 206 ------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A 255 (330)
T 3hym_B 206 ------------NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK------------------LKKYAEA 255 (330)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH------------------TTCHHHH
T ss_pred ------------cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH------------------hcCHHHH
Confidence 4789999999999998652 2 1244444433322 3558899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 448 r~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.......
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 78999998888777644
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=1e-12 Score=136.29 Aligned_cols=280 Identities=12% Similarity=0.020 Sum_probs=215.0
Q ss_pred HHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccc
Q 005434 353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET 431 (697)
Q Consensus 353 l~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~ 431 (697)
+...+...|+++..+...|..... .++++.|..+|+++++..|... .+..++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~-------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~--------- 68 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYY-------------NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE--------- 68 (330)
T ss_dssp ---------CCCTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH---------
T ss_pred hHHHHhhchhhHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH---------
Confidence 334556677888888888888775 4789999999999999888654 44444444332
Q ss_pred cCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434 432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (697)
Q Consensus 432 ~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (697)
.+..+.+...|++++..+|.++..|...+..+...| ++++|...+++++ ...|.+...|.....+....
T Consensus 69 ---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 69 ---------LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp ---------HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTCTTCTHHHHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHc
Confidence 345789999999999999999999999999999999 9999999999999 78899999999888888776
Q ss_pred cccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHH
Q 005434 511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII 588 (697)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl 588 (697)
+ +.+.+.+.|++++...|... ..|...+..+...+ +.+...|++++...+. ...++....
T Consensus 139 ~----------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~ 200 (330)
T 3hym_B 139 S----------EHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVG 200 (330)
T ss_dssp T----------CHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHH
T ss_pred c----------CHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHH
Confidence 6 47889999999998776532 33433333333333 5677888888754221 233444455
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434 589 NLVIQKDGIQQAREMYKRFLALP---------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWR 659 (697)
Q Consensus 589 ~~~~~~~~~~~AR~iy~~~i~~~---------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~ 659 (697)
......|++++|...|++++... |.....+...+.+....+ +.+.|...|++++...|.++.+|.
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK------KYAEALDYHRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHhhCccchHHHH
Confidence 55677899999999999999864 444567777787777788 899999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 660 DYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 660 ~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
..+..-...|+.+.|...|+++++..|+.
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 99999999999999999999999877654
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.3e-12 Score=143.59 Aligned_cols=311 Identities=12% Similarity=0.007 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhC--------CCCHHHHHHHH--H
Q 005434 140 VARILEIYRLAVMR---------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--------PKVPGVWIYAA--A 199 (697)
Q Consensus 140 ~~r~~~iyeral~~---------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--------p~~~~lW~~~a--~ 199 (697)
...+...|++|+.. .|+....|...+......| +.++...|++++.+. +..+.++...+ .
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 34566677777765 5677778888877777767 578889999998863 34456655433 2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCC
Q 005434 200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279 (697)
Q Consensus 200 ~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 279 (697)
..+ ..++.+.|...|++++...|+++..|..+.......+. ++
T Consensus 147 ~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--------~~---------------------------- 189 (472)
T 4g1t_A 147 LKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--------WP---------------------------- 189 (472)
T ss_dssp HHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--------SC----------------------------
T ss_pred HHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--------ch----------------------------
Confidence 332 35689999999999999999999888777654432211 01
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-cCcHHHHHHHHHHHHh
Q 005434 280 LDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQSDDMHDKILSDMQR 358 (697)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~~~~~~~~~il~~~~~ 358 (697)
..+.|...|++|++..|++...+..+...+..... ......+...+++++.
T Consensus 190 ----------------------------~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~ 241 (472)
T 4g1t_A 190 ----------------------------PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241 (472)
T ss_dssp ----------------------------CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01234567888888888876665555444433321 1234578888999999
Q ss_pred hCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccC-CCC
Q 005434 359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD-SEL 436 (697)
Q Consensus 359 ~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~-~~~ 436 (697)
..|+.+..|..++..+.. .+.++.|...|+++++..|+.. .+.................... ...
T Consensus 242 ~~~~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRR-------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HCSSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred hCccHHHHHHHHHHHHHH-------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998875 4789999999999999988754 3221111111100000000000 000
Q ss_pred CchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH---HHHHHHHHHHHhccc
Q 005434 437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ---LWLLRISVEIRCVTR 513 (697)
Q Consensus 437 ~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~---lW~~~i~l~~~~~~~ 513 (697)
........+.+...|++++..+|.....|...+..+...|++++|...+++++ ...|+... ++..+..+......
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~- 386 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMK- 386 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCC-
Confidence 00122345678888888888888888888888888888888888888888888 45554322 23333332221111
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcC
Q 005434 514 NSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
+.+.+.+.|++|++..|
T Consensus 387 --------~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 387 --------CEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp --------CHHHHHHHHHHHHHSCC
T ss_pred --------CHHHHHHHHHHHHhcCc
Confidence 34556666666665444
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=6.4e-13 Score=140.59 Aligned_cols=283 Identities=12% Similarity=0.021 Sum_probs=216.9
Q ss_pred HHHHHHhhCCCCh----hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcC
Q 005434 352 ILSDMQRDFLVDP----KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP 426 (697)
Q Consensus 352 il~~~~~~~p~~~----~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~ 426 (697)
.+++++...|+++ ..|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---- 110 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQ-------------EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE---- 110 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHH-------------TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH----
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Confidence 4444445566554 458888888775 4789999999999999888654 44333332222
Q ss_pred CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH---
Q 005434 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR--- 503 (697)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~--- 503 (697)
.+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...
T Consensus 111 --------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 111 --------------NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL-RYTPAYAHLVTPAEEG 175 (368)
T ss_dssp --------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTGGGCC-----
T ss_pred --------------CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 7888876666422
Q ss_pred ------------HHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005434 504 ------------ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALI 569 (697)
Q Consensus 504 ------------i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~ 569 (697)
+......+ +.+++.+.|++++...|......+|...+..+...+ +.+...|++++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDS----------LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp ----------CTTHHHHHHH----------HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcccHHHHHHHHHhhcc----------cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122333 478889999999987775323456665555554444 577888888886
Q ss_pred hhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHh
Q 005434 570 SVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA 649 (697)
Q Consensus 570 ~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~ 649 (697)
..+. ....+..........|++++|...|++++...|.....+...+.+....+ +.+.|...|++++.
T Consensus 246 ~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~ 313 (368)
T 1fch_A 246 VRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG------AHREAVEHFLEALN 313 (368)
T ss_dssp HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred hCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
Confidence 5321 23334444555667899999999999999999998888888888888888 89999999999999
Q ss_pred hCCCC-----------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 650 TYDQN-----------TSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 650 ~~~~~-----------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
..|.+ ..+|...+..-...|+.+.|..++.+++..+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 88855 6899999999999999999999999999887543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=7.8e-13 Score=140.19 Aligned_cols=269 Identities=12% Similarity=0.011 Sum_probs=206.7
Q ss_pred hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (697)
Q Consensus 365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (697)
..|...+..+.. .++++.|...|+++++..|... .|......... .+.
T Consensus 66 ~~~~~~~~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~ 114 (365)
T 4eqf_A 66 PGAFEEGLKRLK-------------EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAE------------------NEN 114 (365)
T ss_dssp TTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTC
T ss_pred hHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH------------------CCC
Confidence 348888888765 5889999999999999888654 44444433332 356
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH----------HHHHHHhccc
Q 005434 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR----------ISVEIRCVTR 513 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~----------i~l~~~~~~~ 513 (697)
.+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|... .......+
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 191 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS-- 191 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCHHHHCC-------------------CCH--
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH-HhCccchHHHhhhccchHHHHHHHHHHhhhh--
Confidence 8899999999999999999999999999999999999999999999 6788776666544 22222222
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434 514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV 591 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~ 591 (697)
+.+++.+.|++++...|......+|......+...+ +.+...|++++...+. ...++......+
T Consensus 192 --------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 257 (365)
T 4eqf_A 192 --------VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATL 257 (365)
T ss_dssp --------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 578899999999988775323556665555554444 6788889998875322 234444455556
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC------------CchHHH
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ------------NTSLWR 659 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~------------~~~lW~ 659 (697)
...|++++|...|++++...|.....+...+.+...+| +.+.|...|++++...|. +..+|.
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG------AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC------CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 77899999999999999999999888888888888888 889999999999998863 368999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 660 DYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 660 ~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
.....-...|..+.+..+..+++..+..
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~~l~~~~~ 359 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLGDLDVLLR 359 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHcCcHHHHHHHHHhhHHHHHH
Confidence 9999999999999999988887666643
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=1.4e-12 Score=137.92 Aligned_cols=277 Identities=13% Similarity=0.004 Sum_probs=199.7
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 005434 146 IYRLAVMRFKGD----IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220 (697)
Q Consensus 146 iyeral~~~p~~----~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~ 220 (697)
.|++++...|++ ...|...+......| +..+...|++++..+|.++.+|...+.... ..|+++.|...|++++.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLE 126 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHh
Confidence 566666666665 345777777666666 467888888888888888888888888775 78888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhh
Q 005434 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKS 300 (697)
Q Consensus 221 ~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (697)
..|.+..+|...+......+.
T Consensus 127 ~~~~~~~~~~~l~~~~~~~g~----------------------------------------------------------- 147 (368)
T 1fch_A 127 LKPDNQTALMALAVSFTNESL----------------------------------------------------------- 147 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHcCC-----------------------------------------------------------
Confidence 888877777766655443221
Q ss_pred hhhhhhhhhhHHHHHHHHHHhcCCCchHHHHH----------------HHHHHHHccccCcHHHHHHHHHHHHhhCCC--
Q 005434 301 VDLFREQGLRVLQTIYSGAVEALPSSFNLRQR----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLV-- 362 (697)
Q Consensus 301 ~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~----------------~~~~~~~fe~~~~~~~~~~il~~~~~~~p~-- 362 (697)
.+.|...|+++++..|.+...+.. +-.++ ..+ ..+.+...++++++..|+
T Consensus 148 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 148 --------QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS---LFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp --------HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH---HHHHHHHHHHHHHHHSTTSC
T ss_pred --------HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc---cHHHHHHHHHHHHHhCcCcc
Confidence 223444444444443333221110 00111 111 246777888899999999
Q ss_pred ChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434 363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (697)
Q Consensus 363 ~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~ 441 (697)
++..|..++..+.. .++++.|...|+++++..|... .|......... .
T Consensus 216 ~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~ 264 (368)
T 1fch_A 216 DPDVQCGLGVLFNL-------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN------------------G 264 (368)
T ss_dssp CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred cHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH------------------c
Confidence 78889999988875 4789999999999999887653 44444433332 3
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-----------HHHHHHHHHHHHHh
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-----------VQLWLLRISVEIRC 510 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-----------~~lW~~~i~l~~~~ 510 (697)
+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++ ...|..........
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 558899999999999999999999999999999999999999999999 677776 88999888888777
Q ss_pred cccCCCCCCccchHHHHHHHHHHHhh
Q 005434 511 VTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
|. .+.+..++.+++..
T Consensus 344 g~----------~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 344 GQ----------SDAYGAADARDLST 359 (368)
T ss_dssp TC----------GGGHHHHHTTCHHH
T ss_pred CC----------hHhHHHhHHHHHHH
Confidence 64 45666666666543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.50 E-value=1.6e-12 Score=137.78 Aligned_cols=251 Identities=12% Similarity=0.005 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E 236 (697)
...|...+......| +..+...|++++..+|.++..|...+.... ..|+++.|...|++++...|.+...|...+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344777777666666 567888888888888888888888888886 788888888888888888888877776665544
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHH
Q 005434 237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY 316 (697)
Q Consensus 237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy 316 (697)
...+ +++.|..+|
T Consensus 144 ~~~g-------------------------------------------------------------------~~~~A~~~~ 156 (365)
T 4eqf_A 144 TNTS-------------------------------------------------------------------HQQDACEAL 156 (365)
T ss_dssp HHTT-------------------------------------------------------------------CHHHHHHHH
T ss_pred Hccc-------------------------------------------------------------------cHHHHHHHH
Confidence 3211 234566677
Q ss_pred HHHHhcCCCchHHHHHH----------HHHHHHccccCcHHHHHHHHHHHHhhCCC--ChhhHHHHHHhhcccCCCCCCC
Q 005434 317 SGAVEALPSSFNLRQRF----------FEIVEATNLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLKMTDSVSKDGT 384 (697)
Q Consensus 317 ~~al~~~p~~~~~~~~~----------~~~~~~fe~~~~~~~~~~il~~~~~~~p~--~~~~w~~~a~~~l~~~~~~~~~ 384 (697)
+++++..|++...+..+ ...+... ...+.+...++++++..|+ ++..|..++..+..
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-------- 225 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS---SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-------- 225 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CC---HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH--------
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH--------
Confidence 77776555433322221 1122111 1356788889999999999 78899999988875
Q ss_pred CcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434 385 SEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (697)
Q Consensus 385 ~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~ 463 (697)
.++++.|...|+++++..|... .|......... .+..+.|...|++++..+|.++.
T Consensus 226 -----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~ 282 (365)
T 4eqf_A 226 -----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN------------------GDRSEEAVEAYTRALEIQPGFIR 282 (365)
T ss_dssp -----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCchH
Confidence 5889999999999999888654 55555444332 35688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhc
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCV 511 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~ 511 (697)
.|...+..+...|++++|...+++++ ...|+ +..+|..........+
T Consensus 283 ~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 283 SRYNLGISCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999 56655 3567776665555444
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=3.8e-11 Score=131.80 Aligned_cols=376 Identities=11% Similarity=-0.045 Sum_probs=183.7
Q ss_pred hc-CchHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--------CHHHHHHH
Q 005434 171 RK-NGRMKKVLAQVIRF---------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEY 232 (697)
Q Consensus 171 ~~-~~~~~~~~~ral~~---------~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~--------~~~lW~~y 232 (697)
.| ++++...|++|+.+ +|+....|...+.... ..|+.+.|...+++++..+|. ...++...
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 35 56888899999876 6667778888887775 789999999999999876542 11221111
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (697)
Q Consensus 233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (697)
....+ . +....++.|
T Consensus 143 g~~~~-------------~----------------------------------------------------~~~~~y~~A 157 (472)
T 4g1t_A 143 GWTRL-------------K----------------------------------------------------CGGNQNERA 157 (472)
T ss_dssp HHHHH-------------H----------------------------------------------------HCTTHHHHH
T ss_pred HHHHH-------------H----------------------------------------------------HccccHHHH
Confidence 00000 0 001145678
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchH
Q 005434 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (697)
Q Consensus 313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~ 392 (697)
...|++|++..|++++.+..+.......+.......+...++++++..|+++..+..++....... ...+.
T Consensus 158 ~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~---------~~~~~ 228 (472)
T 4g1t_A 158 KVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR---------EEGEE 228 (472)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH---------hhhhH
Confidence 888888888888877666555444322211011122334455555666666555544432221100 01234
Q ss_pred HHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005434 393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL 471 (697)
Q Consensus 393 ~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l 471 (697)
.+.|...|++++...|... .|......... .+..+.+...|++|+..+|.+..+|...+..
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRR------------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 4455555555555544432 22222111111 1334555555555555555555554444333
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHH
Q 005434 472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALK 551 (697)
Q Consensus 472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~ 551 (697)
+...+.. ..+. ...... ....... ..+.+...|++++..-|... ..|.....
T Consensus 291 y~~~~~~-------~~~~---~~~~~~-------~~~~~~~---------~~~~A~~~~~~a~~~~~~~~--~~~~~lg~ 342 (472)
T 4g1t_A 291 YRAKVFQ-------VMNL---RENGMY-------GKRKLLE---------LIGHAVAHLKKADEANDNLF--RVCSILAS 342 (472)
T ss_dssp HHHHHHH-------HHHC----------------CHHHHHH---------HHHHHHHHHHHHHHHCTTTC--CCHHHHHH
T ss_pred HHHHHHH-------hhhH---HHHHHH-------HHHHHHh---------hHHHHHHHHHHHhhcCCchh--hhhhhHHH
Confidence 2211000 0000 000000 0000000 23445555666655443321 12222222
Q ss_pred HHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH-HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcc
Q 005434 552 FFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL-VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNL 628 (697)
Q Consensus 552 ~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~-~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~ 628 (697)
.+...+ +.+...|++++..-.... ....+...|..+ ....|+.++|...|++++.+.|.+....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPV---AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------
Confidence 222222 455555666554211000 000111222222 2356889999999999999988764321
Q ss_pred CCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 629 ASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 629 ~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
+ ....+.+++++++..+|.++..|......-...|+.+.|...|++|+..-+
T Consensus 410 ~------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 410 K------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp H------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred H------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 1 446777889999999999999999999988899999999999999997543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=6.9e-12 Score=129.82 Aligned_cols=151 Identities=11% Similarity=0.000 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~ 424 (697)
.+.+...++++++..|+++..|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 218 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNL-------------SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-- 218 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence 4567778888888899999999999988865 4789999999999999887653 44444433332
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---------
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD--------- 495 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~--------- 495 (697)
.+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.
T Consensus 219 ----------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 219 ----------------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI-YMQVGGTTPTGEAS 281 (327)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSCC-----C
T ss_pred ----------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCccccccccch
Confidence 3557899999999999999999999999999999999999999999999 67788
Q ss_pred ---cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 496 ---SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 496 ---~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
+...|..........|. .+.+..++++++...|
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNR----------PDLVELTYAQNVEPFA 317 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTC----------HHHHHHHTTCCSHHHH
T ss_pred hhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhcc
Confidence 78889888887777663 6777777777665443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.46 E-value=7e-12 Score=129.77 Aligned_cols=263 Identities=17% Similarity=0.096 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+..+|++++...|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 566788999999999999999999988888777 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
+...|....+|........... .. ..++.. +
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~-----------------------~--------------------- 146 (327)
T 3cv0_A 116 LLSQPQYEQLGSVNLQADVDID---DL--NVQSED-----------------------F--------------------- 146 (327)
T ss_dssp HHTSTTTTTC------------------------------------------------C---------------------
T ss_pred HHhCCccHHHHHHHhHHHHHHH---HH--HHHHHh-----------------------H---------------------
Confidence 9999987766655532111000 00 000000 0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
-....++.+.|..+|+++++..|.+...+..+...+...+ ..+.+...++.+++..|+++..|..++..+..
T Consensus 147 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 218 (327)
T 3cv0_A 147 ---FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN---NYDSAAANLRRAVELRPDDAQLWNKLGATLAN-- 218 (327)
T ss_dssp ---CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred ---HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence 0011235678999999999998988877777776665543 35788899999999999999999999998875
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
.++++.|...|+++++..|... .|......... .+..+.|...|++++..
T Consensus 219 -----------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 219 -----------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN------------------MSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHh
Confidence 4789999999999999887643 44433333322 35588999999999999
Q ss_pred CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005434 458 GCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 458 ~~~------------~~~lw~~y~~l~~~~~~~~~A~~l~~~al 489 (697)
.|. .+..|...+..+...|++++|..++++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888 78999999999999999999999998877
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.32 E-value=1e-10 Score=125.06 Aligned_cols=263 Identities=11% Similarity=0.075 Sum_probs=200.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCHHH
Q 005434 151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN-VTAARALMQNGLRVCPTSEEL 228 (697)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~-~~~aR~~~~r~l~~~p~~~~l 228 (697)
+...|++..+|..........+ +.++...|++++..+|+++.+|...+.... ..|+ ++.|...|++++..+|++..+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566778888988888877777 678999999999999999999999999886 6785 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434 229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG 308 (697)
Q Consensus 229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (697)
|.....+.... | .
T Consensus 169 ~~~~g~~~~~~-----------g--------------------------------------------------------~ 181 (382)
T 2h6f_A 169 WHHRRVLVEWL-----------R--------------------------------------------------------D 181 (382)
T ss_dssp HHHHHHHHHHH-----------T--------------------------------------------------------C
T ss_pred HHHHHHHHHHc-----------c--------------------------------------------------------C
Confidence 98776543221 1 1
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (697)
Q Consensus 309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~ 388 (697)
++.|...|++|++..|++...|...-.++...+. .+.+...++++++..|++...|..++..........
T Consensus 182 ~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~------- 251 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN------- 251 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC-------
T ss_pred HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc-------
Confidence 2357889999999999999888888777776653 356888899999999999999999988876411100
Q ss_pred cchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 389 ~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
....++.+...|++++...|+.. .|.......... + ....+++...++++ ..+|.++..+..
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~----g------------~~~~~~a~~~~~~~-~~~p~~~~al~~ 314 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR----G------------LSKYPNLLNQLLDL-QPSHSSPYLIAF 314 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT----C------------GGGCHHHHHHHHHH-TTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc----C------------ccchHHHHHHHHHh-ccCCCCHHHHHH
Confidence 01123445789999999988765 555433322210 0 12345677777776 778999988888
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHH-hhccCCCcHHHHHHHHHHHHH
Q 005434 468 YVTLYLQLG---------KLDEARKLAAKL-CSGKLSDSVQLWLLRISVEIR 509 (697)
Q Consensus 468 y~~l~~~~~---------~~~~A~~l~~~a-l~~~~P~~~~lW~~~i~l~~~ 509 (697)
.+.++...| .+++|.++++++ + ...|.....|.........
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHH
Confidence 888888764 258999999999 8 7899999999887765543
No 32
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.31 E-value=7.2e-12 Score=110.60 Aligned_cols=120 Identities=9% Similarity=0.030 Sum_probs=76.2
Q ss_pred cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 005434 492 KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISV 571 (697)
Q Consensus 492 ~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~ 571 (697)
..|++++.|..|+.++++.|... +++-+++++++|++|+..+|+.+ ..-|..|+-
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~----~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~-------------------- 62 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPL----SDALLNKLIGRYSQAIEALPPDK-YGQNESFAR-------------------- 62 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSC----CHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHH--------------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCc----hhhHHHHHHHHHHHHHHcCCccc-cccHHHHHH--------------------
Confidence 35899999999999998776410 11235889999999999999875 556766652
Q ss_pred hhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434 572 AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (697)
Q Consensus 572 ~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~ 651 (697)
||..|+.|. ..+++++||++|+.|+..+..-..+|+.|+.||..++ ++.+||++..+|+..+
T Consensus 63 -----------LWIrYA~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg------nl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 63 -----------IQVRFAELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQG------NVKKSKQLLQKAVERG 124 (161)
T ss_dssp -----------HHHHHHHHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTT
T ss_pred -----------HHHHHHHHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc------cHHHHHHHHHHHhccC
Confidence 233444442 2356666666666666543222456666666666666 6666666666666655
Q ss_pred CCC
Q 005434 652 DQN 654 (697)
Q Consensus 652 ~~~ 654 (697)
|..
T Consensus 125 ~k~ 127 (161)
T 4h7y_A 125 AVP 127 (161)
T ss_dssp CBC
T ss_pred CCc
Confidence 543
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=7.1e-10 Score=108.65 Aligned_cols=210 Identities=13% Similarity=0.016 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
|.+...|..........| +..+...|++++...|+++..|...+.... ..|+.+.|...|++++...|++...|....
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 778888888888877777 578899999999999999999999998886 789999999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (697)
Q Consensus 234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (697)
.+...... ..
T Consensus 81 ~~~~~~~~---------~~------------------------------------------------------------- 90 (217)
T 2pl2_A 81 EAYVALYR---------QA------------------------------------------------------------- 90 (217)
T ss_dssp HHHHHHHH---------TC-------------------------------------------------------------
T ss_pred HHHHHhhh---------hh-------------------------------------------------------------
Confidence 54432100 00
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHH
Q 005434 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (697)
Q Consensus 314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~ 393 (697)
+. .. +.. + ..+.+...++++++..|+++..|..++..+.. .+++
T Consensus 91 ----------~~-~~--------~~~-g---~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-------------~g~~ 134 (217)
T 2pl2_A 91 ----------ED-RE--------RGK-G---YLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-------------LGER 134 (217)
T ss_dssp ----------SS-HH--------HHH-H---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCH
T ss_pred ----------hh-hc--------ccc-c---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------cCCh
Confidence 00 00 000 0 23456677778888888888888888888765 4789
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434 394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL 473 (697)
Q Consensus 394 ~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~ 473 (697)
+.|...|+++++.......|......... .+..+.|...|++++..+|.++.++...+.++.
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLS------------------MGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999876333344444433332 356789999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHh
Q 005434 474 QLGKLDEARKLAAKLC 489 (697)
Q Consensus 474 ~~~~~~~A~~l~~~al 489 (697)
..|++++|...++++-
T Consensus 197 ~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 197 LKGKAEEAARAAALEH 212 (217)
T ss_dssp C---------------
T ss_pred HccCHHHHHHHHHHHh
Confidence 9999999998888754
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.7e-09 Score=107.45 Aligned_cols=234 Identities=11% Similarity=-0.028 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH-------HH
Q 005434 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE-------EL 228 (697)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~-------~l 228 (697)
....|...+..+...| +..+...|++++... .++.+|...+.... ..|+++.|...|++++...|... .+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3456666677666666 578999999999999 88999999999886 79999999999999999988652 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434 229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG 308 (697)
Q Consensus 229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (697)
|......... .++
T Consensus 82 ~~~l~~~~~~-------------------------------------------------------------------~~~ 94 (258)
T 3uq3_A 82 FARIGNAYHK-------------------------------------------------------------------LGD 94 (258)
T ss_dssp HHHHHHHHHH-------------------------------------------------------------------TTC
T ss_pred HHHHHHHHHH-------------------------------------------------------------------ccc
Confidence 2222211110 113
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (697)
Q Consensus 309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~ 388 (697)
.+.|...|+++++..|.. ... ...+ ..+.+...++.++...|.++..|..++..+..
T Consensus 95 ~~~A~~~~~~a~~~~~~~-~~~-------~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 151 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTA-DIL-------TKLR---NAEKELKKAEAEAYVNPEKAEEARLEGKEYFT------------ 151 (258)
T ss_dssp HHHHHHHHHHHHHHCCCH-HHH-------HHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHhcCchh-HHH-------HHHh---HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH------------
Confidence 467888999999877663 221 1111 23567778888899999999999999998875
Q ss_pred cchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 389 ~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
.++++.|...|+++++..|... .|......... .+..+.|...|++++..+|.++..|..
T Consensus 152 -~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 152 -KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------LMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4789999999999999888754 44433333222 355889999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccC------CCcHHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLL 502 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~ 502 (697)
.+..+...|++++|...+++++ ... |++..+|..
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH-HhChhhcCCCchHHHHHH
Confidence 9999999999999999999999 666 777666654
No 35
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.21 E-value=3.1e-10 Score=100.26 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhcCCC--------
Q 005434 86 KRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD-------- 157 (697)
Q Consensus 86 ~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~p~~-------- 157 (697)
.-.|.+..+|+.|+.-+.+- .....| +...+++.+|+||+...|-+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~-------------------------g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrY 60 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKN-------------------------SVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESF 60 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHH-------------------------TCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHH
T ss_pred eeCCCCHHHHHHHHHHHHHc-------------------------CCCchh-hHHHHHHHHHHHHHHcCCccccccHHHH
Confidence 34678999999999876321 111234 67889999999999998763
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434 158 IELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y 232 (697)
+.+|..|+.|..-...++++.+|..|+..|..-+.+|++||+||+ .+||+.+||+++.+|+-.+|...++-...
T Consensus 61 I~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 61 ARIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 468888888854433578999999999998889999999999998 89999999999999999999875544333
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.19 E-value=6.4e-09 Score=111.03 Aligned_cols=246 Identities=9% Similarity=0.072 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
..++...|++++...|++...|......+...| ...+...|++++..+|+++.+|...+.... ..|+++.|...|++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD 191 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 457889999999999999999999999888776 468999999999999999999999999885 78999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
+|...|++...|.....+.... |
T Consensus 192 al~ldP~~~~a~~~lg~~~~~~-----------g---------------------------------------------- 214 (382)
T 2h6f_A 192 ILNQDAKNYHAWQHRQWVIQEF-----------K---------------------------------------------- 214 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH-----------T----------------------------------------------
T ss_pred HHHhCccCHHHHHHHHHHHHHc-----------C----------------------------------------------
Confidence 9999999999997655433221 1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHH---HHHHHHHHHHhhCCCChhhHHHHHHhh
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD---MHDKILSDMQRDFLVDPKYWDWLARLK 374 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~---~~~~il~~~~~~~p~~~~~w~~~a~~~ 374 (697)
.++.|...|+++++..|++...|..+-.++.......... .....+++++...|++...|..++...
T Consensus 215 ----------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 215 ----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284 (382)
T ss_dssp ----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1235788999999999999888888877776522110111 124678899999999999999988876
Q ss_pred cccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (697)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~ 453 (697)
.... ...++.|...++++ +..|... .+................+ ..+.++.|..+|++
T Consensus 285 ~~~g-----------~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~---------~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 285 QDRG-----------LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN---------KEDILNKALELCEI 343 (382)
T ss_dssp TTTC-----------GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS---------HHHHHHHHHHHHHH
T ss_pred HccC-----------ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc---------hHHHHHHHHHHHHH
Confidence 5410 12567788888776 5555543 4444444433321000000 01246899999999
Q ss_pred H-HHcCCCcHHHHHHHHHHHHh
Q 005434 454 A-EAMGCLTEDIAHRYVTLYLQ 474 (697)
Q Consensus 454 a-l~~~~~~~~lw~~y~~l~~~ 474 (697)
+ ++.+|.....|...+..+..
T Consensus 344 l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 344 LAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH
Confidence 9 99999999999988776553
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.18 E-value=3e-09 Score=104.16 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=122.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
|.++..|...+..+...|++++|...+++++ ...|++...|..........| +.+++...|+++++.-|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KENPQDPEALYWLARTQLKLG----------LVNPALENGKTLVARTP 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCC
Confidence 4445566666666666666666666666666 566666666666555555544 25566666666666554
Q ss_pred hhhhHHHHHHHHHHHHhh-----------h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434 539 ALESESLWLMALKFFMNQ-----------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK 605 (697)
Q Consensus 539 ~~~~~~lW~~y~~~~~~~-----------~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~ 605 (697)
.. ...|......+... + +.+...|++++..-+. ....+......+...|.+++|...|+
T Consensus 71 ~~--~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 71 RY--LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp TC--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Cc--HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 32 23333333322222 3 4566667777654211 22333333444567899999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434 606 RFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRAR 682 (697)
Q Consensus 606 ~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral 682 (697)
+++... .+...+...+.+....| +.+.|...|++++...|.++.+|......-...|+.+.|...|+++-
T Consensus 143 ~al~~~-~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 143 QALALE-DTPEIRSALAELYLSMG------RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHC-CCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHhcc-cchHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999988 77888888888877888 89999999999999999999999999999999999999999888764
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.17 E-value=1.1e-09 Score=110.13 Aligned_cols=245 Identities=10% Similarity=0.015 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH----HHHH
Q 005434 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL----WVEY 232 (697)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l----W~~y 232 (697)
.+.+..++..+...| +..+...|++++..+|.++..|...+.... ..|+.+.|...|++++. .|.++.+ |...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 456677777777766 578999999999999999999999888875 78999999999999999 5544333 3333
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHH
Q 005434 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (697)
Q Consensus 233 ~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (697)
...... .++.+.|
T Consensus 81 g~~~~~-------------------------------------------------------------------~~~~~~A 93 (272)
T 3u4t_A 81 GKILMK-------------------------------------------------------------------KGQDSLA 93 (272)
T ss_dssp HHHHHH-------------------------------------------------------------------TTCHHHH
T ss_pred HHHHHH-------------------------------------------------------------------cccHHHH
Confidence 222111 0134678
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH-HhhcccCCCCCCCCcCccch
Q 005434 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKDGTSEDIVPS 391 (697)
Q Consensus 313 ~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a-~~~l~~~~~~~~~~~~~~~~ 391 (697)
...|+++++..|.+...+..+-.++...+ ..+.+...++++++..|.++..|..++ ..+.. +
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------~ 156 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--------------K 156 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--------------T
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--------------H
Confidence 89999999988888888777777665543 357788889999999999999999999 66643 4
Q ss_pred HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CC-----cH
Q 005434 392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CL-----TE 462 (697)
Q Consensus 392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~-----~~ 462 (697)
+++.|...|+++++..|+.. .|........... + ....+.|...|++++... |. ..
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-----~----------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD-----P----------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS-----T----------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-----c----------chhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 79999999999999888753 2222222222111 0 011334667777777652 33 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHH
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (697)
..|...+.++...|++++|...+++++ ...|++...|....
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNIL-ALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCccHHHHHHHhh
Confidence 678888999999999999999999999 78999988886543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.3e-09 Score=103.31 Aligned_cols=212 Identities=11% Similarity=-0.014 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc-------HHHHHHHHHHHHHhcccC
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-------VQLWLLRISVEIRCVTRN 514 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~-------~~lW~~~i~l~~~~~~~~ 514 (697)
+..+.|...|++++..+ .++..|...+..+...|++++|...+.+++ ...|.+ ...|..........+
T Consensus 19 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 93 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISKSFARIGNAYHKLG--- 93 (258)
T ss_dssp TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHHHHHHHHHHHHHcc---
Confidence 56889999999999998 888999999999999999999999999999 555654 677777777776665
Q ss_pred CCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK 594 (697)
Q Consensus 515 ~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~ 594 (697)
+.+.+.+.|++++...|.. .++.. ...-+.+...+++++...+. ...++..........
T Consensus 94 -------~~~~A~~~~~~a~~~~~~~---~~~~~-----~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 94 -------DLKKTIEYYQKSLTEHRTA---DILTK-----LRNAEKELKKAEAEAYVNPE------KAEEARLEGKEYFTK 152 (258)
T ss_dssp -------CHHHHHHHHHHHHHHCCCH---HHHHH-----HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHT
T ss_pred -------cHHHHHHHHHHHHhcCchh---HHHHH-----HhHHHHHHHHHHHHHHcCcc------hHHHHHHHHHHHHHh
Confidence 4788999999999876642 22111 11123455666766643211 122333344456678
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhH
Q 005434 595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETA 674 (697)
Q Consensus 595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a 674 (697)
|++++|...|++++...|.+...+...+.+....+ +.+.|...|++++...|.++..|...+..-...|+.+.|
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999888888888888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 005434 675 TAVYWRARKTL 685 (697)
Q Consensus 675 ~~vy~ral~~~ 685 (697)
...|.++++..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999887
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.13 E-value=9.7e-09 Score=99.58 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=155.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+|.++..|...+..+...|++++|...+++++ ...|++...|..........+ +.+.+.+.|++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDAL-KSDPKNELAWLVRAEIYQYLK----------VNDKAQESFRQALSIK 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHhC
Confidence 45567778888888888888888888888888 677888888877777666555 3677778888888766
Q ss_pred ChhhhHHHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434 538 SALESESLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG 614 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~ 614 (697)
|.. ...|...+..+... + +.+...|++++. .+.. +....++..........|++++|...|++++...|..
T Consensus 73 ~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 73 PDS--AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY---PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp TTC--HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC---SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCC--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 543 34555555544444 4 566677777764 1110 0011222333444567899999999999999998888
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
...+...+.+....+ +.+.|..+|++++...| .++..|.....+....|+.+.+..++..+.+..|++.
T Consensus 147 ~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 147 PPAFKELARTKMLAG------QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 888888888887888 89999999999999999 8888888888899999999999999998887776653
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.13 E-value=1.1e-08 Score=99.21 Aligned_cols=214 Identities=13% Similarity=0.017 Sum_probs=141.7
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHH
Q 005434 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE 231 (697)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~ 231 (697)
..|++...|...+..+...| ...+...|++++..+|.++.+|...+.... ..|+.+.|...|++++...|.+..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 35666777777777766666 467777888888888877777777777765 6778888888888888877776665544
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhH
Q 005434 232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV 311 (697)
Q Consensus 232 y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (697)
.+.+.... .++.+.
T Consensus 82 l~~~~~~~------------------------------------------------------------------~~~~~~ 95 (225)
T 2vq2_A 82 YGWFLCGR------------------------------------------------------------------LNRPAE 95 (225)
T ss_dssp HHHHHHTT------------------------------------------------------------------TCCHHH
T ss_pred HHHHHHHh------------------------------------------------------------------cCcHHH
Confidence 43222100 002235
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (697)
Q Consensus 312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~ 391 (697)
|...|+++++ .| ..|.+...|..++..+.. .+
T Consensus 96 A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~l~~~~~~-------------~~ 127 (225)
T 2vq2_A 96 SMAYFDKALA-DP----------------------------------TYPTPYIANLNKGICSAK-------------QG 127 (225)
T ss_dssp HHHHHHHHHT-ST----------------------------------TCSCHHHHHHHHHHHHHH-------------TT
T ss_pred HHHHHHHHHc-Cc----------------------------------CCcchHHHHHHHHHHHHH-------------cC
Confidence 5666666555 11 223334555566665543 36
Q ss_pred HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHH
Q 005434 392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYV 469 (697)
Q Consensus 392 ~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~-~~~~lw~~y~ 469 (697)
+++.|...|+++++..|... .|......... .+..+.|...|++++..+| .++..|...+
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------AGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 67888888888888776543 33333333222 3457788888888888888 8888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (697)
.++...|+.+.|...++.+. ...|++...+
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~ 219 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQ-ANFPYSEELQ 219 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH-HhCCCCHHHH
Confidence 88888899998888888877 6778876654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.12 E-value=5.5e-09 Score=103.88 Aligned_cols=215 Identities=11% Similarity=0.019 Sum_probs=157.7
Q ss_pred HhcCCC-HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434 152 MRFKGD-IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (697)
Q Consensus 152 ~~~p~~-~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW 229 (697)
...|.+ ...|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|.+..+|
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 445665 788888888877777 578999999999999999999999999886 78999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhh
Q 005434 230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL 309 (697)
Q Consensus 230 ~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (697)
..++.+.... ++.
T Consensus 109 ~~la~~~~~~-------------------------------------------------------------------g~~ 121 (252)
T 2ho1_A 109 NNYGGFLYEQ-------------------------------------------------------------------KRY 121 (252)
T ss_dssp HHHHHHHHHT-------------------------------------------------------------------TCH
T ss_pred HHHHHHHHHH-------------------------------------------------------------------hHH
Confidence 6655433210 123
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (697)
Q Consensus 310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~ 389 (697)
+.|...|+++++ .+ ..|.++..|..++..+..
T Consensus 122 ~~A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~la~~~~~------------- 153 (252)
T 2ho1_A 122 EEAYQRLLEASQ-DT----------------------------------LYPERSRVFENLGLVSLQ------------- 153 (252)
T ss_dssp HHHHHHHHHHTT-CT----------------------------------TCTTHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHh-Cc----------------------------------cCcccHHHHHHHHHHHHH-------------
Confidence 456777777665 11 123334445555555543
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
.++++.|...|+++++..|... .|......... .+..+.|...|++++..+|.+...|...
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK------------------EREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 3668888888888888776543 44333333322 2457888889999988888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (697)
+.++...|++++|...+++++ ...|++...+.
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 247 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQLK-RLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHCTTSHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH-HHCCCCHHHHH
Confidence 899999999999999999998 78888776653
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.12 E-value=2.6e-09 Score=105.26 Aligned_cols=188 Identities=12% Similarity=-0.040 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.|...|++++..+|.+...|...+..+...|++++|...+++++ ...|.+...|.....+....+
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~---------- 105 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELDSSAATAYYGAGNVYVVKE---------- 105 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHhc----------
Confidence 557788889999999999999999999999999999999999999999 788999999988888777665
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
+.+.+.+.|++++...|.. ..+|...+..+. ..|++++|.
T Consensus 106 ~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~--------------------------------------~~~~~~~A~ 145 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMEN--GDLFYMLGTVLV--------------------------------------KLEQPKLAL 145 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHH--------------------------------------HTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH--------------------------------------HhccHHHHH
Confidence 4788888899998876543 344443333222 234444455
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434 602 EMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRA 681 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ra 681 (697)
..|++++...|.....+...+.+....+ +.+.|...|++++...+.++.+|...+......|+.+.|...+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 146 PYLQRAVELNENDTEARFQFGMCLANEG------MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHT------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555444444444444444444444 4445555555555544444444544444444455555555555555
Q ss_pred HhhcC
Q 005434 682 RKTLK 686 (697)
Q Consensus 682 l~~~~ 686 (697)
++..+
T Consensus 220 ~~~~p 224 (243)
T 2q7f_A 220 IDIQP 224 (243)
T ss_dssp HHHCT
T ss_pred HccCc
Confidence 44443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.11 E-value=1.6e-08 Score=101.62 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=153.8
Q ss_pred cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH----HHHHHHHH
Q 005434 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI----FDLYTKFL 420 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l----w~~yi~~~ 420 (697)
..+.+..+++++++..|+++..|..++..+.. .++++.|...|+++++..++... |.......
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-------------LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 35678888899999999999999999998765 47899999999999993322222 32222222
Q ss_pred HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434 421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (697)
.. .+..+.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|
T Consensus 85 ~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~ 145 (272)
T 3u4t_A 85 MK------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTTTDPKVF 145 (272)
T ss_dssp HH------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSCCCHHHH
T ss_pred HH------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCCCcHHHH
Confidence 21 3558899999999999999999999999999999999999999999999 7899999998
Q ss_pred HHHH-HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhhhCCC
Q 005434 501 LLRI-SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ---KHYFDKLVEIALISVAKDGG 576 (697)
Q Consensus 501 ~~~i-~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~---~~~~~~l~~~a~~~~~~~~~ 576 (697)
.... .+... + +.+++.+.|+++++..|......++...+...... .+.+...|++++........
T Consensus 146 ~~l~~~~~~~-~----------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 146 YELGQAYYYN-K----------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHHT-T----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHH-H----------HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 8776 44432 2 47889999999998777542222222222111111 12245556666655422210
Q ss_pred CCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434 577 GESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQN 620 (697)
Q Consensus 577 ~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~ 620 (697)
. ....+... ........|++++|...|++++...|.+...+..
T Consensus 215 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 215 K-YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp G-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred c-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 0 00001111 1222344566666666666666666665554443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.09 E-value=8.8e-09 Score=102.35 Aligned_cols=209 Identities=16% Similarity=-0.015 Sum_probs=154.9
Q ss_pred CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 458 GCLT-EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 458 ~~~~-~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
+|.. +..|...+..+...|++++|...+++++ ...|.+...|.....+....+ +.+.+.+.|++++..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL-EIDPSSADAHAALAVVFQTEM----------EPKLADEEYRKALAS 100 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHH
Confidence 3443 6678888888888888888888888888 677888888877777666655 367788888888876
Q ss_pred cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434 537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG 614 (697)
Q Consensus 537 ~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~ 614 (697)
.|.. ..+|...+..+...+ +.+...|++++. . +. .+....++..........|++++|...|++++...|..
T Consensus 101 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 101 DSRN--ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D-TL--YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C-TT--CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CcCc--HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C-cc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 6532 345555444444333 556667777654 0 00 00112222233444567899999999999999998888
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 615 ~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
...+...+.+....+ +.+.|..+|++++...+.++..|...+......|+.+.|..+++++++..++..
T Consensus 175 ~~~~~~la~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 175 PSVALEMADLLYKER------EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 888888888888888 899999999999998888888899999999999999999999999998887654
No 46
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.07 E-value=8.4e-09 Score=105.98 Aligned_cols=189 Identities=7% Similarity=-0.001 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 442 HYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~--~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
+..+.+...|++.+.. +|.++.+|...+..+...|++++|...+++ |++...|...+.+....|
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g-------- 144 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLD-------- 144 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTT--------
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCC--------
Confidence 4478899999998876 588999999999999999999999988865 788899998888888776
Q ss_pred ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCH
Q 005434 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~ 597 (697)
+.+.+.+.|++++..-|......+-..|+.+....+ +.+..+|++++...+. ...++..........|.+
T Consensus 145 --~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 145 --RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp --CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCH
T ss_pred --CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCH
Confidence 378888999999876653211222222333322222 3455666666654211 222333333344556677
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL 657 (697)
Q Consensus 598 ~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l 657 (697)
++|...|++++...|.+...+...+.+....|. ..+.+..++++++...|.++.+
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-----~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-----PPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCCChHH
Confidence 777777777777666666666665655555551 2234566667777666666544
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.07 E-value=2.4e-08 Score=100.25 Aligned_cols=226 Identities=13% Similarity=-0.074 Sum_probs=164.6
Q ss_pred chHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
.++++.|...|+++++..+.. .....+...-.... ..+..+.|...|++++..+|.++..|..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~A~~~~~~al~~~~~~~~~~~~ 82 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYD---------------SLGLRALARNDFSQALAIRPDMPEVFNY 82 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH---------------HcccHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 588999999999999875321 12222222211111 1356889999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHH
Q 005434 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (697)
Q Consensus 468 y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~ 547 (697)
.+..+...|++++|...+++++ ...|.+...|.....+....+ +.+++.+.|++++...|......+|.
T Consensus 83 la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999 789999999998888887766 47899999999998777543333343
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC----HHHHHHHHH
Q 005434 548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQNCIE 623 (697)
Q Consensus 548 ~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~----~~~~~~~i~ 623 (697)
... +.....+.+...+++++...+.. ... ...+......++.+.|...|++++...|.. ...+...+.
T Consensus 152 ~~~-~~~~~~~~A~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 152 YLA-EQKLDEKQAKEVLKQHFEKSDKE------QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHH-HHHHCHHHHHHHHHHHHHHSCCC------STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhcCHHHHHHHHHHHHhcCCcc------hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 322 12222256777787777653321 122 223444556778899999999999876532 456777777
Q ss_pred HHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 624 LENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 624 lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
+....+ +.+.|...|++++...|.+.
T Consensus 224 ~~~~~g------~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 224 YYLSLG------DLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHTT------CHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHcC------CHHHHHHHHHHHHhCCchhH
Confidence 777777 89999999999999887553
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.06 E-value=9.7e-09 Score=101.13 Aligned_cols=170 Identities=11% Similarity=0.043 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~ 541 (697)
+..|...+..+...|++++|...+++++ ...|.+...|..........+ +.+.+.+.|++++...|..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~~~- 90 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAI-EENKEDAIPYINFANLLSSVN----------ELERALAFYDKALELDSSA- 90 (243)
T ss_dssp -------------------CCTTHHHHH-TTCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCcc-
Confidence 4567777788888999999999999999 788999999988887777665 3788888899988765532
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005434 542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC 621 (697)
Q Consensus 542 ~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~ 621 (697)
..+|... .......|++++|...|++++...|.....+...
T Consensus 91 -~~~~~~l--------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 91 -ATAYYGA--------------------------------------GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp -HHHHHHH--------------------------------------HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred -hHHHHHH--------------------------------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2222211 1112346889999999999999999888888888
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 622 IELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
+.+....+ +.+.|..+|++++...+.++.+|...+......|+.+.|..++.++++..++.
T Consensus 132 a~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 132 GTVLVKLE------QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHTS------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhc------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 88888888 89999999999999999889999999999999999999999999999887654
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.00 E-value=3.2e-08 Score=93.36 Aligned_cols=171 Identities=7% Similarity=-0.035 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (697)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~ 234 (697)
.+..+|..........| +..+...|++++..+|+++..|...+.... ..|+.+.|...+.+++...|.....|.....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 46788888888887777 578999999999999999999999999886 7999999999999999999998888776654
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHH
Q 005434 235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQT 314 (697)
Q Consensus 235 ~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (697)
+.... .+.+.+..
T Consensus 82 ~~~~~-------------------------------------------------------------------~~~~~a~~ 94 (184)
T 3vtx_A 82 ANFMI-------------------------------------------------------------------DEKQAAID 94 (184)
T ss_dssp HHHHT-------------------------------------------------------------------TCHHHHHH
T ss_pred HHHHc-------------------------------------------------------------------CCHHHHHH
Confidence 43221 12346778
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHH
Q 005434 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394 (697)
Q Consensus 315 iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~ 394 (697)
.+.++++..|.+...+..+-.++...+ ..+.+...++++++..|+++..|..+|..+.. .++++
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-------------~g~~~ 158 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMG---EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-------------KGLRD 158 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhC---CchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-------------CCCHH
Confidence 888899888888877777666665443 35788899999999999999999999999875 58899
Q ss_pred HHHHHHHHHhhcCCch
Q 005434 395 KAIQVYEEALKNVPSS 410 (697)
Q Consensus 395 ~a~~vye~al~~~~~~ 410 (697)
+|...|++|++..|..
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999877753
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.98 E-value=3.5e-08 Score=93.07 Aligned_cols=171 Identities=13% Similarity=0.006 Sum_probs=123.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh
Q 005434 460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 460 ~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
.++.+|...+..+...|++++|.+.+++++ ...|++...|.....+....+ +.+.+.+.+.+++...|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~----------~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL-KADPNNVETLLKLGKTYMDIG----------LPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCch
Confidence 357899999999999999999999999999 789999999998888777766 367787888888776653
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHH
Q 005434 540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ 619 (697)
Q Consensus 540 ~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~ 619 (697)
. ...|..... .....++++.|...+.+++...|.....+.
T Consensus 72 ~--~~~~~~~~~--------------------------------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 111 (184)
T 3vtx_A 72 S--AEAYYILGS--------------------------------------ANFMIDEKQAAIDALQRAIALNTVYADAYY 111 (184)
T ss_dssp C--HHHHHHHHH--------------------------------------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred h--HHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 233322221 122345666777777777777777766666
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 620 ~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
..+.+...++ +.+.|...|+++++..|.++..|......-...|+.+.|...|++|++.-|+
T Consensus 112 ~lg~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 112 KLGLVYDSMG------EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhC------CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 6666666666 6777777777777777777777777777777777777777777777765443
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.96 E-value=3.2e-08 Score=109.09 Aligned_cols=212 Identities=14% Similarity=-0.065 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL-DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~-~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
+.++.+...++.+....|.....|...+..+...|++ ++|...+++++ ...|++...|..........+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g--------- 151 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV-KLEPELVEAWNQLGEVYWKKG--------- 151 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC---------
Confidence 4466777888888888888999999999999999999 99999999999 789999999998888887776
Q ss_pred cchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh---------h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHH
Q 005434 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQ---------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIIN 589 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~---------~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~ 589 (697)
+.+++.+.|++++...|. ...|......+... + +.+...|++++...+. ....+..+..
T Consensus 152 -~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~ 221 (474)
T 4abn_A 152 -DVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRSWYILGN 221 (474)
T ss_dssp -CHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 478899999999987765 25565555555444 3 4677788888865321 2333333333
Q ss_pred HHHHh--------CCHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHH
Q 005434 590 LVIQK--------DGIQQAREMYKRFLALPR---PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLW 658 (697)
Q Consensus 590 ~~~~~--------~~~~~AR~iy~~~i~~~p---~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW 658 (697)
.+... |++++|...|++++...| .....|...+.+....+ +.+.|...|++++...|.++..|
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE------SYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHH
Confidence 34455 789999999999999988 78888988888888888 89999999999999999999999
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 005434 659 RDYYSTETKLGTSETATAVYW 679 (697)
Q Consensus 659 ~~y~~fE~~~G~~~~a~~vy~ 679 (697)
..........|+.+.|...+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999998888888877776543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.95 E-value=5.3e-08 Score=97.75 Aligned_cols=221 Identities=13% Similarity=-0.025 Sum_probs=170.0
Q ss_pred HhHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCC
Q 005434 441 EHYISHLLTVYEKAEAMG----CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~----~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~ 516 (697)
.+..+.|...|++++... |.++..|...+..+...|++++|...+++++ ...|++...|.....+....+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~----- 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAG----- 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTT-----
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHcc-----
Confidence 477899999999999874 3456789999999999999999999999999 789999999998888877766
Q ss_pred CCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434 517 SPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK 594 (697)
Q Consensus 517 ~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~ 594 (697)
+.+.+.+.|++++...|.. ...|...+..+...+ +.+...|++++...+. ......++......
T Consensus 92 -----~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~~~ 157 (275)
T 1xnf_A 92 -----NFDAAYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-------DPFRSLWLYLAEQK 157 (275)
T ss_dssp -----CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHhcCccc--cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHh
Confidence 4789999999999877643 355655555444444 5788888988864321 11223334444567
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC----CchHHHHHHHHHHhcCC
Q 005434 595 DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ----NTSLWRDYYSTETKLGT 670 (697)
Q Consensus 595 ~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~----~~~lW~~y~~fE~~~G~ 670 (697)
|++++|...|++++...|+....+. .+.+....+ +.+.+...|++++...+. ++.+|...+......|+
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNI------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSS------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhc------CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 9999999999999998877755544 333333444 668899999999876652 25889999999999999
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 005434 671 SETATAVYWRARKTLKDS 688 (697)
Q Consensus 671 ~~~a~~vy~ral~~~~~~ 688 (697)
.+.|...|++++..-|+.
T Consensus 231 ~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhCCchh
Confidence 999999999999877643
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.92 E-value=7.4e-08 Score=98.83 Aligned_cols=183 Identities=5% Similarity=-0.040 Sum_probs=142.2
Q ss_pred hhHHHHHHHHHHhc--CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCc
Q 005434 309 LRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (697)
Q Consensus 309 ~~~a~~iy~~al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~ 386 (697)
.+.|...|+..+.. .|++...+..+-.++..-+ ..+.+...+++ |.++..+..++..+..
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~---------- 142 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLK---------- 142 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHH----------
Confidence 46788889988865 4887776655555554332 34556666655 8889999999998875
Q ss_pred CccchHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHH
Q 005434 387 DIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (697)
Q Consensus 387 ~~~~~~~~~a~~vye~al~~~~~~~---lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~ 463 (697)
.|+.+.|...|+++++..|... +...|+.+... .+..+.|..+|++++..+|.++.
T Consensus 143 ---~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~------------------~~~~~eA~~~~~~~l~~~p~~~~ 201 (291)
T 3mkr_A 143 ---LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG------------------GEKLQDAYYIFQEMADKCSPTLL 201 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHSCCCHH
T ss_pred ---CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC------------------chHHHHHHHHHHHHHHhCCCcHH
Confidence 4889999999999999877653 22233333221 25688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
+|...+..+...|++++|...+++++ ...|++.+.|...+.+....|. ..+.+.+.+++++..-|..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~l~~l~~~~~~~g~---------~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEAL-DKDSGHPETLINLVVLSQHLGK---------PPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999 7899999999999888877764 2355777899998777643
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.92 E-value=3.6e-08 Score=101.44 Aligned_cols=273 Identities=14% Similarity=0.031 Sum_probs=171.7
Q ss_pred chHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc------CCCc
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMI--FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM------GCLT 461 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~l--w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~------~~~~ 461 (697)
.++++.|...|+++++..|.... ...|...-.-.. ..+..+.+...|++++.. .+..
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------------YLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 47899999999999998776531 122222211111 124577888888887765 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---Cc---HHHHHHHHHHHHHhcccCC--CC------CC--ccchHH
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---DS---VQLWLLRISVEIRCVTRNS--FS------PS--KADILS 525 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P---~~---~~lW~~~i~l~~~~~~~~~--~~------~~--~~~~~~ 525 (697)
..+|...+..+...|++++|...+.+++ ...| +. ...+.....+....+.... .. +. ....+.
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 5678888999999999999999999988 4333 21 2344444444443332000 00 00 001566
Q ss_pred HHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC---hHHHHHHHHHHhCC
Q 005434 526 IFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS---LPSAIINLVIQKDG 596 (697)
Q Consensus 526 ~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~---l~~~yl~~~~~~~~ 596 (697)
+.+.|++++...+... ...++......+...+ +.+...+++++........ ... ............|+
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCC
Confidence 7777777766432111 1223333333333333 5677788888876544221 111 12223334567899
Q ss_pred HHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CC----chHHHHHHHH
Q 005434 597 IQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QN----TSLWRDYYST 664 (697)
Q Consensus 597 ~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~----~~lW~~y~~f 664 (697)
+++|...|++++...+.. ...+...+.+....+ +.+.|...|++++...+ .+ ..+|......
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999864432 345666667777777 89999999999998866 22 3578888888
Q ss_pred HHhcCChhhHHHHHHHHHhhcCC
Q 005434 665 ETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 665 E~~~G~~~~a~~vy~ral~~~~~ 687 (697)
....|+.+.|...+.+|+...+.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHcCChHHHHHHHHHHHHHHHh
Confidence 88999999999999999987653
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.91 E-value=7e-08 Score=106.35 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~-~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
..++...++.+....|.+...|..........+ + ..+...|++++..+|.++..|...+...+ ..|+++.|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 556777888888889999999999998887766 7 78999999999999999999999999886 78999999999999
Q ss_pred hhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh
Q 005434 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (697)
Q Consensus 218 ~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (697)
++...|+ ...|.....+... ... . .
T Consensus 163 al~~~p~-~~~~~~lg~~~~~-------------~~~--------------------------~-------------~-- 187 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQ-------------LQT--------------------------D-------------S-- 187 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTT-------------CCC--------------------------S-------------C--
T ss_pred HHhhCCC-HHHHHHHHHHHHH-------------hcc--------------------------C-------------C--
Confidence 9999998 4555444322110 000 0 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhccc
Q 005434 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (697)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~ 377 (697)
.....+.++.|...|+ ++++..|+++..|..++..+...
T Consensus 188 ----~~~~~g~~~~A~~~~~-------------------------------------~al~~~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 188 ----GDEHSRHVMDSVRQAK-------------------------------------LAVQMDVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp ----HHHHHHHHHHHHHHHH-------------------------------------HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----hhhhhhhHHHHHHHHH-------------------------------------HHHHhCCCCHHHHHHHHHHHHHH
Confidence 0001123344444444 44445555555565555555320
Q ss_pred CCCCCCCCcCccchHHHHHHHHHHHHhhcCC---chh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHH
Q 005434 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (697)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~a~~vye~al~~~~---~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~ 453 (697)
..... ...++++.|...|+++++..| ... .|......... .+..+.|...|++
T Consensus 227 ~~~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~ 283 (474)
T 4abn_A 227 YFNTG-----QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY------------------EESYGEALEGFSQ 283 (474)
T ss_dssp HHHTT-----CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHhhc-----cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH------------------cCCHHHHHHHHHH
Confidence 00000 002678888888888888766 322 44433333322 2457788888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLA 485 (697)
Q Consensus 454 al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~ 485 (697)
|+..+|.++..|...+.++...|++++|...+
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888777776544
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.90 E-value=6.9e-08 Score=103.40 Aligned_cols=272 Identities=12% Similarity=-0.013 Sum_probs=177.7
Q ss_pred chHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc------CCCc
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMI--FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM------GCLT 461 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~l--w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~------~~~~ 461 (697)
.++++.|...|+++++..|.... ...|...-.-.. ..+..+.+...|++++.. .+..
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF---------------YLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 47899999999999998776531 112221111111 135578888888888875 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhccc----CCCCCC---ccchHHHHH
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCVTR----NSFSPS---KADILSIFE 528 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~~~----~~~~~~---~~~~~~~~~ 528 (697)
...|...+..+...|++++|...+++++ .. .|.....|.....+....+.. ...... ....+.+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6788899999999999999999999998 43 233345555555555444310 000000 001567777
Q ss_pred HHHHHHhhcChh----hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC---hHHHHHHHHHHhCCHHH
Q 005434 529 LLKCILTKVSAL----ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS---LPSAIINLVIQKDGIQQ 599 (697)
Q Consensus 529 ~f~~al~~~p~~----~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~---l~~~yl~~~~~~~~~~~ 599 (697)
.|++++...+.. .....|......+...+ +.+...|++++........ ... ........+...|++++
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD---RAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHCcCHHH
Confidence 788877643211 12234443343333333 5677888888876544211 111 12223334567899999
Q ss_pred HHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--C----chHHHHHHHHHHh
Q 005434 600 AREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--N----TSLWRDYYSTETK 667 (697)
Q Consensus 600 AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~----~~lW~~y~~fE~~ 667 (697)
|...|++++...+.. ...+...+.+....+ +.+.|...|++++...+. + ...+......-..
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA 355 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 999999999865532 345666777777777 899999999999998662 2 2578888888889
Q ss_pred cCChhhHHHHHHHHHhhcC
Q 005434 668 LGTSETATAVYWRARKTLK 686 (697)
Q Consensus 668 ~G~~~~a~~vy~ral~~~~ 686 (697)
.|+.+.|...|.+|++..+
T Consensus 356 ~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHHHh
Confidence 9999999999999998874
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.86 E-value=1.5e-07 Score=100.09 Aligned_cols=285 Identities=13% Similarity=-0.007 Sum_probs=182.2
Q ss_pred hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (697)
Q Consensus 364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~--lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~ 441 (697)
...|...+..... .++++.|...|+++++..|... +...|...-.... ..
T Consensus 9 ~~~l~~~g~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~---------------~~ 60 (406)
T 3sf4_A 9 CLELALEGERLCK-------------SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF---------------YL 60 (406)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---------------HT
T ss_pred HHHHHHHHHHHHH-------------hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH---------------Hh
Confidence 4445666666654 4789999999999999877653 1122222211111 13
Q ss_pred hHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAM------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR 509 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~ 509 (697)
+..+.+...|++|+.. .+.....|...+..+...|++++|...+.+++ ...|.. ...|.....+...
T Consensus 61 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-DISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcccccchHHHHHHHHHHHHH
Confidence 4577888888888765 22335678888999999999999999999998 444432 3355444444444
Q ss_pred hccc-----CCCCCC-----ccchHHHHHHHHHHHhhcChh----hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhh
Q 005434 510 CVTR-----NSFSPS-----KADILSIFELLKCILTKVSAL----ESESLWLMALKFFMNQK--HYFDKLVEIALISVAK 573 (697)
Q Consensus 510 ~~~~-----~~~~~~-----~~~~~~~~~~f~~al~~~p~~----~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~ 573 (697)
.+.. ...... ....+.+.+.|.+++...+.. .....|......+...+ +.+...|++++...+.
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 3320 000000 001566777777777643211 12233443333333333 5677888888876654
Q ss_pred CCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434 574 DGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLF 644 (697)
Q Consensus 574 ~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~ly 644 (697)
... ....... ........|++++|...|++++...|.. ...+...+.+....+ +.+.|...|
T Consensus 220 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~ 290 (406)
T 3sf4_A 220 FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ------DYEKAIDYH 290 (406)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred cCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC------cHHHHHHHH
Confidence 321 1111222 2333567899999999999999765433 345666677777777 899999999
Q ss_pred HHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 645 ESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 645 e~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
++++...+.. ..+|......-...|+.+.|...+++|++..+
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999986622 35788888888889999999999999988753
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.79 E-value=2e-06 Score=84.05 Aligned_cols=80 Identities=4% Similarity=-0.118 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHH
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP-KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p-~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y 232 (697)
|.+...|..........| +.++...|++++...| .++..|...+.... ..|+++.|...|++++...|....+|...
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 445677777777666666 5678888888888888 77888877777775 78888888888888888888866666655
Q ss_pred HHH
Q 005434 233 LRM 235 (697)
Q Consensus 233 ~~~ 235 (697)
...
T Consensus 83 ~~~ 85 (228)
T 4i17_A 83 SAA 85 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.77 E-value=0.00013 Score=80.24 Aligned_cols=412 Identities=8% Similarity=-0.103 Sum_probs=245.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----hc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 005434 146 IYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQ 216 (697)
Q Consensus 146 iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~ 216 (697)
.++++. .+++.+.......+... .+ ..++...|++++.. .++..+...+.+.. . .++.+.|...|+
T Consensus 29 ~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 29 QLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHH
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 344443 36788888777776655 23 35788999999875 56888888888775 5 789999999999
Q ss_pred HhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchh
Q 005434 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (697)
Q Consensus 217 r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (697)
++.... +...+.....+... |...
T Consensus 104 ~a~~~~--~~~a~~~Lg~~y~~------------g~g~------------------------------------------ 127 (490)
T 2xm6_A 104 KAALKG--LPQAQQNLGVMYHE------------GNGV------------------------------------------ 127 (490)
T ss_dssp HHHHTT--CHHHHHHHHHHHHH------------TSSS------------------------------------------
T ss_pred HHHHCC--CHHHHHHHHHHHHc------------CCCC------------------------------------------
Confidence 998753 44444433322111 1100
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhc
Q 005434 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM 375 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l 375 (697)
.++.+.|...|++|.+. .+......+-.++..- +.......+...++++.+. .++..+..++..+.
T Consensus 128 ---------~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 128 ---------KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS 194 (490)
T ss_dssp ---------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence 01345778888888774 3344444444444321 1122456777778877765 56888888888886
Q ss_pred ccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (697)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al 455 (697)
.... +.++.++|...|+++++.-+... +.....+... .. . ..++.+++...|++++
T Consensus 195 ~g~g---------~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~~y~~-g~--g-----------~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 195 RGLG---------VERNDAISAQWYRKSATSGDELG-QLHLADMYYF-GI--G-----------VTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HTSS---------SCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHH-TS--S-----------SCCCHHHHHHHHHHHH
T ss_pred cCCC---------CCcCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHc-CC--C-----------CCCCHHHHHHHHHHHH
Confidence 5311 24678999999999987643221 1111111111 00 0 1245789999999998
Q ss_pred HcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434 456 AMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (697)
Q Consensus 456 ~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~ 531 (697)
.. .++..+...+.++.. .+++++|...+++++ .. .+...+.....+...... +++ .+.+++...|+
T Consensus 251 ~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~---g~~--~~~~~A~~~~~ 320 (490)
T 2xm6_A 251 EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAE---GVA--KNREQAISWYT 320 (490)
T ss_dssp TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBT---TBC--CCHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCC---CCc--CCHHHHHHHHH
Confidence 76 346677777777777 789999999999998 33 344555444444433200 001 15788999999
Q ss_pred HHHhhcChhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH----hCCHHHHHH
Q 005434 532 CILTKVSALESESLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----KDGIQQARE 602 (697)
Q Consensus 532 ~al~~~p~~~~~~lW~~y~~~~~~-----~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~----~~~~~~AR~ 602 (697)
+++..-++. .|......+.. ..+.+...|++++.. . .+..+..+...+.. .++.++|..
T Consensus 321 ~a~~~~~~~----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 321 KSAEQGDAT----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---G-----EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHTTCHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHhcCCHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---C-----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 998754432 22222222222 114566778887752 1 12222222333444 589999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHh--cCChhhHHHH
Q 005434 603 MYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ---NTSLWRDYYSTETK--LGTSETATAV 677 (697)
Q Consensus 603 iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~---~~~lW~~y~~fE~~--~G~~~~a~~v 677 (697)
.|++++...++.....+..+... ..+ ...+.+.|...|++|+...+. ++..+.....+... .+..+.++.+
T Consensus 389 ~~~~A~~~~~~~a~~~Lg~~y~~-g~g---~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~ 464 (490)
T 2xm6_A 389 WMRKAAEQGLSAAQVQLGEIYYY-GLG---VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TSS---SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHc-CCC---CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 99999997543333333333222 222 123899999999999998743 44444333332222 1222335555
Q ss_pred HHHH
Q 005434 678 YWRA 681 (697)
Q Consensus 678 y~ra 681 (697)
++++
T Consensus 465 ~~~~ 468 (490)
T 2xm6_A 465 IEKY 468 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.75 E-value=2e-06 Score=84.07 Aligned_cols=211 Identities=9% Similarity=-0.073 Sum_probs=138.7
Q ss_pred CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC-chh-HHHHHHHHHHHHhcCCcccccCCCCCc
Q 005434 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSM-IFDLYTKFLMDMIAPKKEETRDSELPS 438 (697)
Q Consensus 361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~-~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~ 438 (697)
|.++..|...+..++. .++++.|...|+++++..| ... .|........
T Consensus 4 ~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------- 53 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN-------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD----------------- 53 (228)
T ss_dssp CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-----------------
T ss_pred ccCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-----------------
Confidence 4567788888888775 4889999999999999886 432 2222111111
Q ss_pred hhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHH-------HHHHHHHHhc
Q 005434 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL-------LRISVEIRCV 511 (697)
Q Consensus 439 ~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~-------~~i~l~~~~~ 511 (697)
..+..+.|...|++++..+|.+...|...+..+...|++++|...+++++ ...|++..++. .........+
T Consensus 54 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 54 -NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp -HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence 13558899999999999999999999999999999999999999999999 78999885544 3333333333
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH-
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINL- 590 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~- 590 (697)
+.+++.+.|+++++.-|..-....|......+... ...+++++..... .. ...|...
T Consensus 132 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~---~~~~~~~a~~~~~--------~~-~~~~~~~~ 189 (228)
T 4i17_A 132 ----------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN---GADVLRKATPLAS--------SN-KEKYASEK 189 (228)
T ss_dssp ----------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH---HHHHHHHHGGGTT--------TC-HHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH---HHHHHHHHHhccc--------CC-HHHHHHHH
Confidence 57899999999998766410234444333222211 1222343332110 11 2223222
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE 625 (697)
....+.+++|...|+++++..|.+.........+.
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 23345677888888888887777766555544443
No 61
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=3.2e-06 Score=86.86 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=181.5
Q ss_pred HHHHHHHHhc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHH
Q 005434 163 KYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--NVTAARALMQNGLRVCPTSEELWVEYLRMELT 238 (697)
Q Consensus 163 ~y~~~~~~~~--~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~--~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~ 238 (697)
.|+.-..+.+ ..++..+++++|..+|.+..+|..-..... ..+ +++.+-..++.+|..+|++..+|..-..+...
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 4444344444 358999999999999999999998888774 677 99999999999999999999999876544422
Q ss_pred HHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHH
Q 005434 239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318 (697)
Q Consensus 239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~ 318 (697)
.... ++.. ...+.+..++++
T Consensus 116 ~~~~-------l~~~-----------------------------------------------------~~~~~EL~~~~~ 135 (306)
T 3dra_A 116 IMEL-------NNND-----------------------------------------------------FDPYREFDILEA 135 (306)
T ss_dssp HHHH-------TTTC-----------------------------------------------------CCTHHHHHHHHH
T ss_pred HHHh-------cccc-----------------------------------------------------CCHHHHHHHHHH
Confidence 1110 0000 012456788999
Q ss_pred HHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHH
Q 005434 319 AVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398 (697)
Q Consensus 319 al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~ 398 (697)
+++..|+++..|..---++..++... ....-..++++++..|.+...|.......... .. ......++.+.+
T Consensus 136 ~l~~~pkny~aW~~R~~vl~~l~~~~-~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~------~~~~~~~~eEl~ 207 (306)
T 3dra_A 136 MLSSDPKNHHVWSYRKWLVDTFDLHN-DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KH------LATDNTIDEELN 207 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GG------GCCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cc------cchhhhHHHHHH
Confidence 99999999998876665666665321 12566778999999999999998766554321 00 000234888999
Q ss_pred HHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHh
Q 005434 399 VYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQ 474 (697)
Q Consensus 399 vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~---~~~~~lw~~y~~l~~~ 474 (697)
.+++++...|... .|. |..+....... ..+.+....++++..+ |.++-.|...++.+.+
T Consensus 208 ~~~~aI~~~p~n~SaW~-y~~~ll~~~~~----------------~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 208 YVKDKIVKCPQNPSTWN-YLLGIHERFDR----------------SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHHHCSSCHHHHH-HHHHHHHHTTC----------------CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHH-HHHHHHHhcCC----------------ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 9999999998876 887 55555443311 1222334444444333 7788888888899989
Q ss_pred cCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 475 LGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 475 ~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
.|+.++|.++++++.....|-....|.-.+.
T Consensus 271 ~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 271 QKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999999999984368888999986553
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.73 E-value=8.5e-07 Score=82.53 Aligned_cols=171 Identities=13% Similarity=0.004 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (697)
Q Consensus 462 ~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~ 541 (697)
...|...+..+...|++++|...+++++ ...|.+...|..........+ +.+.+.+.|++++...|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~~~~~~~~~- 75 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVY-DADAFDVDVALHLGIAYVKTG----------AVDRGTELLERSLADAPDN- 75 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTC-CTTSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTC-
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCccChHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCCC-
Confidence 4567778888889999999999999999 788998888888877776665 3688888888888765532
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005434 542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC 621 (697)
Q Consensus 542 ~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~ 621 (697)
..+|...+ ......|++++|.+.|++++...|.....+...
T Consensus 76 -~~~~~~~a--------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 116 (186)
T 3as5_A 76 -VKVATVLG--------------------------------------LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116 (186)
T ss_dssp -HHHHHHHH--------------------------------------HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -HHHHHHHH--------------------------------------HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence 23332211 122345788899999999998888888888887
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 622 IELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
+.+....+ +.+.|..+|++++...|.++..|...+......|+.+.|..++.+++...+++.
T Consensus 117 a~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 117 GVALDNLG------RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcC------cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 77777777 889999999999999888888999999988899999999999999988876553
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.69 E-value=4e-07 Score=104.97 Aligned_cols=172 Identities=10% Similarity=0.017 Sum_probs=145.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
.|.+++.|...+..+...|++++|...+++|+ +..|++...|.....+....| +.+++.+.|++|++.-
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P~~~~a~~nLg~~l~~~g----------~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQG----------KLQEALMHYKEAIRIS 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhC
Confidence 57788999999999999999999999999999 799999999998888887776 3788889999999866
Q ss_pred ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHH
Q 005434 538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL 617 (697)
Q Consensus 538 p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~ 617 (697)
|.. ...|.... ..+...|++++|.+.|+++++..|.....
T Consensus 74 P~~--~~a~~nLg--------------------------------------~~l~~~g~~~~A~~~~~kAl~l~P~~~~a 113 (723)
T 4gyw_A 74 PTF--ADAYSNMG--------------------------------------NTLKEMQDVQGALQCYTRAIQINPAFADA 113 (723)
T ss_dssp TTC--HHHHHHHH--------------------------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCC--HHHHHHHH--------------------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 532 23332111 11235688999999999999999999998
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
|...+.+...+| +.+.|.+.|++|++..|.++..|......-...|+.+.|...|++++...+
T Consensus 114 ~~~Lg~~~~~~g------~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 114 HSNLASIHKDSG------NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 888888888888 899999999999999999999999999999999999999999999988764
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.67 E-value=0.00096 Score=73.16 Aligned_cols=382 Identities=10% Similarity=-0.071 Sum_probs=233.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005434 178 KVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGED 253 (697)
Q Consensus 178 ~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~ 253 (697)
..+.++. .+.++......+.... . .++.+.|...|++++.. ++...+.....+... |..
T Consensus 28 ~~~~~~a--~~g~~~a~~~lg~~y~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~------------g~g 90 (490)
T 2xm6_A 28 EQLKQKA--ESGEAKAQLELGYRYF-QGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMN------------GEG 90 (490)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH------------TSS
T ss_pred HHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc------------CCC
Confidence 3444443 3567788877777765 5 68999999999999986 344444333322211 110
Q ss_pred cccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHH
Q 005434 254 KGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~ 333 (697)
. .++.+.|...|++|.+. .+......+
T Consensus 91 ~---------------------------------------------------~~~~~~A~~~~~~a~~~--~~~~a~~~L 117 (490)
T 2xm6_A 91 V---------------------------------------------------PQDYAQAVIWYKKAALK--GLPQAQQNL 117 (490)
T ss_dssp S---------------------------------------------------CCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred C---------------------------------------------------CCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 0 01346788889988874 233444444
Q ss_pred HHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhH
Q 005434 334 FEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI 412 (697)
Q Consensus 334 ~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~l 412 (697)
-.++..- +.....+.+...++++... .++..+..++..+..... +.++.++|...|+++++.-. ...
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---------~~~d~~~A~~~~~~a~~~~~-~~a 185 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDG---------VTRDYVMAREWYSKAAEQGN-VWS 185 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS---------SCCCHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---------CCCCHHHHHHHHHHHHHCCC-HHH
Confidence 4444331 1112456777778877664 567888889988865311 24678999999999988632 222
Q ss_pred HHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 005434 413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKL 488 (697)
Q Consensus 413 w~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~a 488 (697)
+......... .. . ..++.+++...|+++...+ ++..+...+.++.. .+++++|...++++
T Consensus 186 ~~~Lg~~y~~-g~--g-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 186 CNQLGYMYSR-GL--G-----------VERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHHHH-TS--S-----------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CC--C-----------CCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2212222111 00 0 1345789999999999863 56777778888876 78999999999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh-------hHHHH
Q 005434 489 CSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ-------KHYFD 561 (697)
Q Consensus 489 l~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~-------~~~~~ 561 (697)
+ .. .+...+.....+... +. + ...+.+++.+.|++++..-++. .+......+... .+.+.
T Consensus 250 ~-~~--~~~~a~~~lg~~y~~-g~---~--~~~d~~~A~~~~~~a~~~~~~~----a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 250 A-EQ--GNSIAQFRLGYILEQ-GL---A--GAKEPLKALEWYRKSAEQGNSD----GQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp H-TT--TCHHHHHHHHHHHHH-TT---T--SSCCHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred H-HC--CCHHHHHHHHHHHHC-CC---C--CCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHHHcCCCCCcCCHHHHH
Confidence 9 33 233333333333332 11 0 0125788999999998653322 222222222221 25677
Q ss_pred HHHHHHHHhhhhCCCCCCCCChHHHHHHHHH-HhC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-cCCCCCccc
Q 005434 562 KLVEIALISVAKDGGGESGFSLPSAIINLVI-QKD---GIQQAREMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDS 636 (697)
Q Consensus 562 ~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~-~~~---~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~-~~~~~~~~~ 636 (697)
..|+++... . ... ....+-.+. ..| +.++|...|+++++... ...+.....+... .+ ...+
T Consensus 317 ~~~~~a~~~---~-----~~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g---~~~~ 382 (490)
T 2xm6_A 317 SWYTKSAEQ---G-----DAT-AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--KAAQFNLGNALLQGKG---VKKD 382 (490)
T ss_dssp HHHHHHHHT---T-----CHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSS---SCCC
T ss_pred HHHHHHHhc---C-----CHH-HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCC---CCCC
Confidence 788887752 1 111 122222222 223 68999999999999743 4444443433322 11 1238
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHHhhcC
Q 005434 637 LVNARKLFESALATYDQNTSLWRDYYSTETK----LGTSETATAVYWRARKTLK 686 (697)
Q Consensus 637 ~~raR~lye~al~~~~~~~~lW~~y~~fE~~----~G~~~~a~~vy~ral~~~~ 686 (697)
.+.|..+|++++.. .++..|.....+-.. .|+.+.|...|++|+..-+
T Consensus 383 ~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999986 356777777776665 7999999999999998763
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.60 E-value=9e-07 Score=90.18 Aligned_cols=211 Identities=14% Similarity=0.049 Sum_probs=147.9
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~ 531 (697)
|.....|...+..+...|++++|..++++++.. ..|.....|..........+ +.+.+.+.|+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~ 93 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------KYKDAANLLN 93 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC----------CHHHHHHHHH
Confidence 455678888899999999999999999999831 34556677777666666655 4788888999
Q ss_pred HHHhhc-----C-hhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHH
Q 005434 532 CILTKV-----S-ALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQA 600 (697)
Q Consensus 532 ~al~~~-----p-~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~A 600 (697)
+++... + .......|...+..+...+ +.+...|++++.......+. ..+..... ........|++++|
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHH
Confidence 998753 1 1112344444444444433 56777888887754221000 01222222 33445678999999
Q ss_pred HHHHHHHHhC--------CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC---------------------
Q 005434 601 REMYKRFLAL--------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY--------------------- 651 (697)
Q Consensus 601 R~iy~~~i~~--------~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~--------------------- 651 (697)
...|++++.. .|.....+...+.+....+ +.+.|..+|++++...
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999986 3333456777777777778 8999999999999752
Q ss_pred ----------------------------CCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 652 ----------------------------DQNTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 652 ----------------------------~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
+..+.+|...+..-...|+.+.|..+|++|++..+
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 12346788888888899999999999999998654
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.59 E-value=1.6e-06 Score=80.66 Aligned_cols=167 Identities=13% Similarity=-0.028 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434 159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~ 237 (697)
..|...+......| ...+...|++++...|.++..|...+.... ..|+.+.|...+++++...|.+..+|...+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555 467888888888888888888888888875 7888999999999999888887777766554432
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHH
Q 005434 238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS 317 (697)
Q Consensus 238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~ 317 (697)
.. ++.+.|...|+
T Consensus 88 ~~-------------------------------------------------------------------~~~~~A~~~~~ 100 (186)
T 3as5_A 88 QV-------------------------------------------------------------------QKYDLAVPLLI 100 (186)
T ss_dssp HH-------------------------------------------------------------------TCHHHHHHHHH
T ss_pred Hh-------------------------------------------------------------------cCHHHHHHHHH
Confidence 21 12346777888
Q ss_pred HHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHH
Q 005434 318 GAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI 397 (697)
Q Consensus 318 ~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~ 397 (697)
++++..|.+...+..+...+...+ ..+.+...++++++..|+++..|..++..+.. .++++.|.
T Consensus 101 ~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~ 164 (186)
T 3as5_A 101 KVAEANPINFNVRFRLGVALDNLG---RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-------------MGRHEEAL 164 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHH
T ss_pred HHHhcCcHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------------cCCHHHHH
Confidence 888877777766666655554432 35678888888888899888889888888865 47789999
Q ss_pred HHHHHHhhcCCc
Q 005434 398 QVYEEALKNVPS 409 (697)
Q Consensus 398 ~vye~al~~~~~ 409 (697)
..|+++++..|+
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999999876554
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=2.7e-05 Score=78.17 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=95.2
Q ss_pred CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchh
Q 005434 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV 440 (697)
Q Consensus 361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~ 440 (697)
|.++..+..++..+.. .+++++|...|+++++.-+ ...+......... .. . .
T Consensus 3 ~~~~~a~~~lg~~~~~-------------~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~~~~-g~--~-----------~ 54 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYK-------------EKDFTQAKKYFEKACDLKE-NSGCFNLGVLYYQ-GQ--G-----------V 54 (273)
T ss_dssp --CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH-TS--S-----------S
T ss_pred CCChHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHc-CC--C-----------c
Confidence 5677888888888765 3779999999999998322 2222222222111 00 0 1
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCC
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~ 516 (697)
.+..+.|...|++|+..+ ++..+...+.++.. .+++++|...+++++. . ++...|.....+......
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~--~~~~a~~~lg~~~~~~~~---- 125 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-L--KYAEGCASLGGIYHDGKV---- 125 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHCSS----
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-c--CCccHHHHHHHHHHcCCC----
Confidence 345789999999999875 78899999999999 9999999999999994 3 356667666665554100
Q ss_pred CCCccchHHHHHHHHHHHhhcC
Q 005434 517 SPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 517 ~~~~~~~~~~~~~f~~al~~~p 538 (697)
...+.+++.+.|++++..-+
T Consensus 126 --~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 126 --VTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp --SCCCHHHHHHHHHHHHHTTC
T ss_pred --cccCHHHHHHHHHHHHhcCc
Confidence 01157889999999987543
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.56 E-value=1.5e-06 Score=100.31 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=129.3
Q ss_pred CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHH
Q 005434 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA 403 (697)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~a 403 (697)
|++.+.+..+-.++..-+ ..+.+...++++++..|++...|..++..+.. .+++++|...|++|
T Consensus 6 P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-------------~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-------------QGKLQEALMHYKEA 69 (723)
T ss_dssp CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHH
Confidence 444455555444444332 35778888999999999999999999988875 47899999999999
Q ss_pred hhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434 404 LKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (697)
Q Consensus 404 l~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~ 482 (697)
++..|+.. .|......... .+..+.|...|++|++.+|.+.+.|...+..+...|++++|.
T Consensus 70 l~l~P~~~~a~~nLg~~l~~------------------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi 131 (723)
T 4gyw_A 70 IRISPTFADAYSNMGNTLKE------------------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99887653 33333332222 355788999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
..+++|+ +..|++...|.....+....+. .+.+.+.|++++...
T Consensus 132 ~~~~~Al-~l~P~~~~a~~~L~~~l~~~g~----------~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 132 ASYRTAL-KLKPDFPDAYCNLAHCLQIVCD----------WTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHH-HHCSCCHHHHHHHHHHHHHTTC----------CTTHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCChHHHhhhhhHHHhccc----------HHHHHHHHHHHHHhC
Confidence 9999999 7889999999888887777664 455666677776543
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.56 E-value=1.1e-06 Score=90.27 Aligned_cols=225 Identities=13% Similarity=-0.050 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhc
Q 005434 442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~ 511 (697)
+..+.|...|++++..+|.++ .++...+..+...|++++|...+++++ .. .|.....|..........+
T Consensus 19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 568899999999999988874 677888999999999999999999987 32 2223556655555555555
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHH--hh--------------------hHHHHHHHH
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFM--NQ--------------------KHYFDKLVE 565 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~--~~--------------------~~~~~~l~~ 565 (697)
+.+.+.+.|++++...+... ....+......+. .. -+.+...++
T Consensus 98 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 98 ----------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 47888899999987654321 1223332222222 22 123455566
Q ss_pred HHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCccc
Q 005434 566 IALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDS 636 (697)
Q Consensus 566 ~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~ 636 (697)
+++........ ....... ........|++++|...|++++...+.. ...+...+.+....+ +
T Consensus 168 ~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~ 238 (338)
T 3ro2_A 168 ENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------E 238 (338)
T ss_dssp HHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT------C
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC------C
Confidence 66554432211 1111122 2333556899999999999999764321 125566666666777 8
Q ss_pred HHHHHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 637 LVNARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 637 ~~raR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
.+.|..+|++++...+.. ..++...+......|+.+.|...+.+|+...+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999887622 36777788888889999999999999988764
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=1.2e-06 Score=93.71 Aligned_cols=225 Identities=13% Similarity=-0.073 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhc
Q 005434 442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGK------LSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~~------~P~~~~lW~~~i~l~~~~~ 511 (697)
+..+.|...|++++..+|.++ .+|...+..+...|++++|...+++++ .. .|.....|.....+....+
T Consensus 62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 557899999999999988876 578888999999999999999999998 33 2445566666666665555
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHh--h-----------------hHHHHHHHHHHH
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMN--Q-----------------KHYFDKLVEIAL 568 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~----~~~~~lW~~y~~~~~~--~-----------------~~~~~~l~~~a~ 568 (697)
+.+.+.+.|++++...+. ......|......+.. . -+.+...|++++
T Consensus 141 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 141 ----------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 478888899999875421 1122333333322222 2 123455566665
Q ss_pred HhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHhccCCCCCcccHHH
Q 005434 569 ISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPGL------VLYQNCIELENNLASVGDKDSLVN 639 (697)
Q Consensus 569 ~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~~------~~~~~~i~lE~~~~~~~~~~~~~r 639 (697)
........ ....... ........|++++|...|++++...+... ..+...+.+....+ +.+.
T Consensus 211 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~ 281 (411)
T 4a1s_A 211 KLMRDLGD---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG------QFED 281 (411)
T ss_dssp HHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT------CHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc------CHHH
Confidence 54432210 1111122 23335678999999999999998654321 25566666667777 8999
Q ss_pred HHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 640 ARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 640 aR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
|...|++++...+.. ..+|...+......|+.+.|...+++++...+
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999987722 36788888888899999999999999988754
No 71
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.52 E-value=2.1e-06 Score=91.11 Aligned_cols=226 Identities=12% Similarity=-0.058 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--c---CCCcHHHHHHHHHHHHHhcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSG--K---LSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~----~lw~~y~~l~~~~~~~~~A~~l~~~al~~--~---~P~~~~lW~~~i~l~~~~~~ 512 (697)
+..+.|...|++++..+|.++ .+|...+..+...|++++|...+++++.. . .|.....|..........|
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g- 101 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG- 101 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC-
Confidence 568899999999999988874 57888899999999999999999998731 1 2223556655555555555
Q ss_pred cCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHH--hh--------------------hHHHHHHHHH
Q 005434 513 RNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFM--NQ--------------------KHYFDKLVEI 566 (697)
Q Consensus 513 ~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~--~~--------------------~~~~~~l~~~ 566 (697)
+.+.+...|++++...+... ....|......+. .. -+.+...|++
T Consensus 102 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 102 ---------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 47888899999988654321 1223333222222 22 2345566777
Q ss_pred HHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHhccCCCCCcccH
Q 005434 567 ALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPGL------VLYQNCIELENNLASVGDKDSL 637 (697)
Q Consensus 567 a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~~~------~~~~~~i~lE~~~~~~~~~~~~ 637 (697)
++........ .+.....| .......|++++|...|++++...|... ..+...+.+....+ +.
T Consensus 173 al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g------~~ 243 (406)
T 3sf4_A 173 NLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG------EF 243 (406)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CH
T ss_pred HHHHHHhccC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC------Ch
Confidence 7665443221 12222222 3335568999999999999998644321 25666666666777 89
Q ss_pred HHHHHHHHHHHhhCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 638 VNARKLFESALATYDQN------TSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 638 ~raR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
+.|...|++++...+.. ..++...+......|+.+.|...+.+|+...+
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99999999999887632 36777888888889999999999999988754
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.52 E-value=3.6e-05 Score=77.22 Aligned_cols=250 Identities=12% Similarity=-0.019 Sum_probs=169.4
Q ss_pred cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCHHH
Q 005434 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEEL 228 (697)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~----~~~~~~aR~~~~r~l~~~p~~~~l 228 (697)
.|++...|..........+ ..++...|++++. |.++..|...+.... . .++.+.|...|++++... +...
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 4778888888888777766 4688999999998 788899998888875 7 899999999999999875 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhh
Q 005434 229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG 308 (697)
Q Consensus 229 W~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (697)
|.....+... +... ..+
T Consensus 77 ~~~lg~~~~~------------g~~~---------------------------------------------------~~~ 93 (273)
T 1ouv_A 77 CHLLGNLYYS------------GQGV---------------------------------------------------SQN 93 (273)
T ss_dssp HHHHHHHHHH------------TSSS---------------------------------------------------CCC
T ss_pred HHHHHHHHhC------------CCCc---------------------------------------------------ccC
Confidence 5544433211 1000 013
Q ss_pred hhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-cccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (697)
Q Consensus 309 ~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~ 387 (697)
.+.|...|++|++. ++...+..+-.++..- ......+.+...++++.+.. ++..+..++..+.....
T Consensus 94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~-------- 161 (273)
T 1ouv_A 94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRG-------- 161 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC--------
Confidence 45778888888875 2445555555555431 00124567788888887754 56778888888764210
Q ss_pred ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
..++.++|...|+++++.-+. ..+......... .. . ..++.++|...|++++..++ +..+..
T Consensus 162 -~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~-g~--~-----------~~~~~~~A~~~~~~a~~~~~--~~a~~~ 223 (273)
T 1ouv_A 162 -TPKDLKKALASYDKACDLKDS-PGCFNAGNMYHH-GE--G-----------ATKNFKEALARYSKACELEN--GGGCFN 223 (273)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH-TC--S-----------SCCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHc-CC--C-----------CCccHHHHHHHHHHHHhCCC--HHHHHH
Confidence 136789999999999976432 222222222221 00 0 13558899999999999865 778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHH
Q 005434 468 YVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLL 502 (697)
Q Consensus 468 y~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (697)
.+.++.. .+++++|...+++|+ ...|+....+..
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~l~ 261 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGACDILK 261 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 8899998 899999999999999 666765555543
No 73
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.51 E-value=0.002 Score=77.09 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=122.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
+..-|...++.+...|++++|...|.+| ..|...+..+.+.+. ++.+.+.+.+|.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge----------~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE----------YQAAVDGARKAN------ 1248 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC----------HHHHHHHHHHhC------
Confidence 3355668999999999999999999885 377777777777763 678877788772
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 005434 541 ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQN 620 (697)
Q Consensus 541 ~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~ 620 (697)
....|.....-....++ |+.|..... .. ...+.....-+.++...|.+++|..++++++...|....+|..
T Consensus 1249 -n~~aWkev~~acve~~E-----f~LA~~cgl-~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKE-----FRLAQMCGL-HI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred -CHHHHHHHHHHHhhhhH-----HHHHHHHHH-hh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 24668754432222222 222222110 00 0022223345667788999999999999999998877778866
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-----CCchHHHHHHHHHHhcCChhhHHHHH
Q 005434 621 CIELENNLASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKLGTSETATAVY 678 (697)
Q Consensus 621 ~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~~a~~vy 678 (697)
...+..+... .++-..-++|+..+...+ ....+|..+.-+=.+.|+.++|...+
T Consensus 1320 LaiLyaKy~p----eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1320 LAILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhCCH----HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 6666655541 256666667887777655 34589999999999999999888443
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.47 E-value=1.5e-05 Score=79.66 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=134.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434 151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (697)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~ 226 (697)
....|++...+...+......| +..+...|++++..+|.+ +..|...+...+ ..|+.+.|...|++++...|+++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCc
Confidence 3456888888888888777777 678999999999999998 889999988886 79999999999999999999775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhh
Q 005434 227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE 306 (697)
Q Consensus 227 ~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (697)
..-..+..+-..+.. .+.. ... ..
T Consensus 87 ~~~~a~~~lg~~~~~--------~~~~------------------------~~~------------------------~~ 110 (261)
T 3qky_A 87 RVPQAEYERAMCYYK--------LSPP------------------------YEL------------------------DQ 110 (261)
T ss_dssp THHHHHHHHHHHHHH--------HCCC------------------------TTS------------------------CC
T ss_pred hhHHHHHHHHHHHHH--------hccc------------------------ccc------------------------cc
Confidence 433333322211100 0000 000 01
Q ss_pred hhhhHHHHHHHHHHhcCCCchHHHHH-----------------HHHHHHHccccCcHHHHHHHHHHHHhhCCCC---hhh
Q 005434 307 QGLRVLQTIYSGAVEALPSSFNLRQR-----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKY 366 (697)
Q Consensus 307 ~~~~~a~~iy~~al~~~p~~~~~~~~-----------------~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~---~~~ 366 (697)
++.+.|...|+++++..|++...... +-.++.. . .....+...++.+++.+|++ +..
T Consensus 111 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~-g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 111 TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER--R-ELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c-cCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 24578889999999888876544422 2222222 1 24678888999999999985 456
Q ss_pred HHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh
Q 005434 367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411 (697)
Q Consensus 367 w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~ 411 (697)
+..++..+...+.... .....+++++|...|+++++..|+..
T Consensus 188 ~~~l~~~~~~~g~~~~---~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSV---RARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHhcccch---hhcccchHHHHHHHHHHHHHHCCCCh
Confidence 7777777653100000 00013789999999999999998764
No 75
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.46 E-value=6.7e-07 Score=81.69 Aligned_cols=124 Identities=9% Similarity=-0.000 Sum_probs=98.2
Q ss_pred HHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCC
Q 005434 356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDS 434 (697)
Q Consensus 356 ~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~ 434 (697)
+....|+++..|..+|+.+.. .+++++|...|+++++..|... .|.........
T Consensus 23 a~~~~p~~~~~~~~la~~y~~-------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~------------ 77 (150)
T 4ga2_A 23 STPSPRQKSIKGFYFAKLYYE-------------AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL------------ 77 (150)
T ss_dssp HSCSHHHHHTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------
T ss_pred hcccCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Confidence 333344556678888888875 4889999999999999988764 55444433332
Q ss_pred CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK-LAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~-l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
.+..+.|...|++|+..+|.+++.|...+.++...|++++|.+ .+++|+ ...|+++.+|..+..+....|
T Consensus 78 ------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al-~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 ------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA-KLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTCC
T ss_pred ------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC
Confidence 3558899999999999999999999999999999999876555 469999 789999999998887776555
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.46 E-value=1.8e-06 Score=80.97 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=127.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
|...+.++..+..+...|++++|...+++++ ...|++...|.....+....|. .+.+...|++++...|
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLS-DELQSRGDVKLAKADCLLETKQ----------FELAQELLATIPLEYQ 71 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHTSHHHHHHHHHHHHHTTC----------HHHHHHHHTTCCGGGC
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHhhhccC
Confidence 3334556777888889999999999999999 7889999999998888877763 6888888888876655
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHH
Q 005434 539 ALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618 (697)
Q Consensus 539 ~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~ 618 (697)
. ..++...... ... ..++...|...|++++...|.+...+
T Consensus 72 -~--~~~~~~~~~~------------------------------------~~~-~~~~~~~a~~~~~~al~~~P~~~~~~ 111 (176)
T 2r5s_A 72 -D--NSYKSLIAKL------------------------------------ELH-QQAAESPELKRLEQELAANPDNFELA 111 (176)
T ss_dssp -C--HHHHHHHHHH------------------------------------HHH-HHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred -C--hHHHHHHHHH------------------------------------HHH-hhcccchHHHHHHHHHHhCCCCHHHH
Confidence 2 2222111100 000 01122246778899999888888888
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
...+.+....| +.+.|...|++++...|.. +..|......-...|+.+.+...|.+++.++
T Consensus 112 ~~la~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 112 CELAVQYNQVG------RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYSI 174 (176)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc------cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 88888888888 8999999999999998843 5689999999889999999999999998753
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.45 E-value=7.8e-06 Score=83.39 Aligned_cols=169 Identities=12% Similarity=-0.062 Sum_probs=130.0
Q ss_pred CCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHH
Q 005434 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (697)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~ 402 (697)
.|++.+.+...-..+..- ...+.+...++++++..|+++..+..+|..++. .++++.|...|++
T Consensus 113 lp~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~l~~ 176 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQE---SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-------------LNRSEDAEAVLXT 176 (287)
T ss_dssp SCCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-------------TTCHHHHHHHHTT
T ss_pred cCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-------------CCCHHHHHHHHHh
Confidence 477666555544444332 246789999999999999999999999999876 4889999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005434 403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (697)
Q Consensus 403 al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~ 482 (697)
++...|.............. ..+..+.+...|++++..+|.+++.+..++..+...|++++|.
T Consensus 177 ~~~~~p~~~~~~~~~~~~l~-----------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 177 IPLQDQDTRYQGLVAQIELL-----------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp SCGGGCSHHHHHHHHHHHHH-----------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CchhhcchHHHHHHHHHHHH-----------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 99888865322222221111 0122345788899999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCc--HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 483 KLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 483 ~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
..+.+++ ...|+. ...|...+.+....|. .+.+...|.+++.
T Consensus 240 ~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~----------~~~a~~~~r~al~ 283 (287)
T 3qou_A 240 ELLFGHL-RXDLTAADGQTRXTFQEILAALGT----------GDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCT----------TCHHHHHHHHHHH
T ss_pred HHHHHHH-hcccccccchHHHHHHHHHHHcCC----------CCcHHHHHHHHHH
Confidence 9999999 788987 8899988888877764 4556666888765
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.45 E-value=3.1e-06 Score=86.13 Aligned_cols=245 Identities=11% Similarity=0.007 Sum_probs=149.1
Q ss_pred CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCC------chh---HHHHHHHHHHHHhcCCccc
Q 005434 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP------SSM---IFDLYTKFLMDMIAPKKEE 430 (697)
Q Consensus 360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~------~~~---lw~~yi~~~~~~~~~~~~~ 430 (697)
.|.....|..++..+.. .++++.|...|+++++... ... .+........
T Consensus 23 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--------- 80 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYAS-------------QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR--------- 80 (311)
T ss_dssp SCHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH---------
T ss_pred chHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---------
Confidence 44456667777877765 4789999999999998421 111 2222222221
Q ss_pred ccCCCCCchhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------C
Q 005434 431 TRDSELPSHVEHYISHLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------S 494 (697)
Q Consensus 431 ~~~~~~~~~~~~~~~~ar~~ye~al~~--------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P 494 (697)
..+..+.|...|++++.. .+.....+...+..+...|++++|...+++++ ... |
T Consensus 81 ---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~ 150 (311)
T 3nf1_A 81 ---------DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHP 150 (311)
T ss_dssp ---------HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCH
T ss_pred ---------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence 124577888888888765 24456788889999999999999999999998 432 4
Q ss_pred CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhhh--HHHHHHHHH
Q 005434 495 DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS------ALESESLWLMALKFFMNQK--HYFDKLVEI 566 (697)
Q Consensus 495 ~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p------~~~~~~lW~~y~~~~~~~~--~~~~~l~~~ 566 (697)
.....|.....+....+ +.+.+.+.|++++.... .......|...+..+...+ +.+...|++
T Consensus 151 ~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQG----------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666666665555 47889999999987521 1112344554444444333 567778888
Q ss_pred HHHhhhhC---CCCCCCCChHHHHHHH------HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434 567 ALISVAKD---GGGESGFSLPSAIINL------VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL 637 (697)
Q Consensus 567 a~~~~~~~---~~~~~~~~l~~~yl~~------~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~ 637 (697)
++...+.. ........++.....+ ....+.+..|...|.+++...|.....+...+.+....| +.
T Consensus 221 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~ 294 (311)
T 3nf1_A 221 ILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQG------KF 294 (311)
T ss_dssp HHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHT------CH
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCC------CH
Confidence 87654221 0001122222221111 123455666777888888777766778888888888888 89
Q ss_pred HHHHHHHHHHHhhCC
Q 005434 638 VNARKLFESALATYD 652 (697)
Q Consensus 638 ~raR~lye~al~~~~ 652 (697)
+.|..+|++++...+
T Consensus 295 ~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 295 EAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998754
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.42 E-value=1.7e-06 Score=86.47 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccc
Q 005434 443 YISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------SDSVQLWLLRISVEIRCVTR 513 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~-~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P~~~~lW~~~i~l~~~~~~~ 513 (697)
..+++..++++....+ |....+|...+..+...|++++|...+.+++ ... |.....|.....+....+
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 99 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKRG-- 99 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHHHHHhc--
Confidence 3445555555544333 4567789999999999999999999999998 332 444566666666655554
Q ss_pred CCCCCCccchHHHHHHHHHHHhhc-----Ch-hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH
Q 005434 514 NSFSPSKADILSIFELLKCILTKV-----SA-LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS 585 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~-----p~-~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~ 585 (697)
+.+++.+.|++++... +. ......|...+..+...+ +.+...|++++..+....+. ..+....
T Consensus 100 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 170 (283)
T 3edt_B 100 --------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAK 170 (283)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 4788999999998753 11 122444544444444444 56778888888764322110 1122222
Q ss_pred H---HHHHHHHhCCHHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434 586 A---IINLVIQKDGIQQAREMYKRFLAL---------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (697)
Q Consensus 586 ~---yl~~~~~~~~~~~AR~iy~~~i~~---------~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~ 653 (697)
. ........|++++|...|++++.. .+....+|.....++...+..........+...++.+....+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 2 334456789999999999999975 2333446666665555443221112233333333332222122
Q ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434 654 NTSLWRDYYSTETKLGTSETATAVYWRARKT 684 (697)
Q Consensus 654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~ 684 (697)
....|...+..-...|+.+.|..+|++|++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467888888899999999999999999875
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.41 E-value=2e-06 Score=80.53 Aligned_cols=168 Identities=12% Similarity=0.015 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
|+..+.+...+......| ...+...|++++..+|+++.+|...+.... ..|+.+.|...|++++...| ++..+....
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 444445555565555666 578999999999999999999999999986 79999999999999999999 765544333
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHH
Q 005434 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (697)
Q Consensus 234 ~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (697)
.+... +. .+...+.
T Consensus 81 ~~~~~------------~~------------------------------------------------------~~~~~a~ 94 (176)
T 2r5s_A 81 KLELH------------QQ------------------------------------------------------AAESPEL 94 (176)
T ss_dssp HHHHH------------HH------------------------------------------------------HTSCHHH
T ss_pred HHHHH------------hh------------------------------------------------------cccchHH
Confidence 22110 00 0001356
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCC--hhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (697)
Q Consensus 314 ~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~--~~~w~~~a~~~l~~~~~~~~~~~~~~~~ 391 (697)
..|+++++..|++...+..+-..+...+ ..+.+...++++++..|+. +..|..++..+.. .|
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-------------~g 158 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQYNQVG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-------------LG 158 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-------------HC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-------------hC
Confidence 7899999999998888888777776543 4578899999999999875 5588888887754 46
Q ss_pred HHHHHHHHHHHHhhc
Q 005434 392 QMQKAIQVYEEALKN 406 (697)
Q Consensus 392 ~~~~a~~vye~al~~ 406 (697)
+.+.|...|+++|..
T Consensus 159 ~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 159 QGNAIASKYRRQLYS 173 (176)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 677899999998764
No 81
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.40 E-value=1e-05 Score=82.40 Aligned_cols=169 Identities=12% Similarity=0.015 Sum_probs=138.9
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
|.+.+.+...+..+...|++++|..++++++ ...|++...|.....+....|. .+++.+.|++++..-|
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW-QLSNQNGEIGLLLAETLIALNR----------SEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHTTC----------HHHHHHHHTTSCGGGC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCcchhHHHHHHHHHHHCCC----------HHHHHHHHHhCchhhc
Confidence 7888899999999999999999999999999 8999999999999988887774 7888888988877665
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHH
Q 005434 539 ALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618 (697)
Q Consensus 539 ~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~ 618 (697)
.. ..+..... +. +...++.+.|...|++++...|.+...+
T Consensus 183 ~~---~~~~~~~~------------------------------------~~-l~~~~~~~~a~~~l~~al~~~P~~~~~~ 222 (287)
T 3qou_A 183 DT---RYQGLVAQ------------------------------------IE-LLXQAADTPEIQQLQQQVAENPEDAALA 222 (287)
T ss_dssp SH---HHHHHHHH------------------------------------HH-HHHHHTSCHHHHHHHHHHHHCTTCHHHH
T ss_pred ch---HHHHHHHH------------------------------------HH-HHhhcccCccHHHHHHHHhcCCccHHHH
Confidence 21 11111100 00 1123455667888999999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKLGTSETATAVYWRARKT 684 (697)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~a~~vy~ral~~ 684 (697)
...+.+....| +.+.|...|++++...|.. ...|......-...|+.+.+...|.|++.+
T Consensus 223 ~~la~~l~~~g------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 223 TQLALQLHQVG------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99998888888 8999999999999999965 789999999999999999999999999875
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.40 E-value=5.1e-05 Score=75.64 Aligned_cols=183 Identities=9% Similarity=-0.016 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+|.+++.+...+..+...|++++|...+++++ ..+|.+ ...|..........+ +.+.+.+.|++++
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~~l 79 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGRTHEWAADAQFYLARAYYQNK----------EYLLAASEYERFI 79 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCSCSTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCcchHHHHHHHHHHHHHhC----------cHHHHHHHHHHHH
Confidence 45666777777777777777777777777777 666766 666665555555544 3677777777777
Q ss_pred hhcChhh-hHHHHHHHHHHHHh--------hh--HHHHHHHHHHHHhhhhCCCCCCCCChHH-----------------H
Q 005434 535 TKVSALE-SESLWLMALKFFMN--------QK--HYFDKLVEIALISVAKDGGGESGFSLPS-----------------A 586 (697)
Q Consensus 535 ~~~p~~~-~~~lW~~y~~~~~~--------~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~-----------------~ 586 (697)
+..|... ....|......+.. .+ +.+...|++++...+.. ..... .
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH------ELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC------TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7655322 12222222221211 22 45666667666543221 11221 1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCC----CcccHHHHHHHHHHHHhhCCCCchH
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVG----DKDSLVNARKLFESALATYDQNTSL 657 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~----~~~~~~raR~lye~al~~~~~~~~l 657 (697)
........|++++|...|++++...|.+ ...+...+.....+|... ...+.+.|...|++++..+|.++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 1333557899999999999999987764 234444443333331000 0027899999999999999977644
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.39 E-value=5.7e-06 Score=75.40 Aligned_cols=134 Identities=6% Similarity=-0.093 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
.+.+++|...|++++...|... .+......... .+..+.|...|++++..+|.++..|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~p~~~~a~~~l 71 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE------------------AKEYDLAKKYICTYINVQERDPKAHRFL 71 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5889999999999988766543 22222222222 3568999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
+.++...|++++|...+++++ ...|++...|.....+....+.. .+.+...+++|++.-|.. ..+|..
T Consensus 72 g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~---------~~aa~~~~~~al~l~P~~--~~~~~l 139 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDVT---------DGRAKYWVERAAKLFPGS--PAVYKL 139 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCSS---------SSHHHHHHHHHHHHSTTC--HHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHhCcCC--HHHHHH
Confidence 999999999999999999999 79999999999988888776641 133444468999877743 456655
Q ss_pred HHHHH
Q 005434 549 ALKFF 553 (697)
Q Consensus 549 y~~~~ 553 (697)
....+
T Consensus 140 ~~~ll 144 (150)
T 4ga2_A 140 KEQLL 144 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 84
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.34 E-value=7e-06 Score=72.42 Aligned_cols=94 Identities=19% Similarity=0.104 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.+..+|...+......| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999886 899999999999999
Q ss_pred hhhCCCCHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLR 234 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~ 234 (697)
++..|++..++..+.+
T Consensus 108 l~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 108 LQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HHHCcCCHHHHHHHHH
Confidence 9999999887766543
No 85
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00058 Score=70.47 Aligned_cols=245 Identities=12% Similarity=0.020 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-- 206 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-- 206 (697)
..++..+++.++..+|.++.+|..--..+...+ .......++.++..+|.++.+|..-.-.. ...+
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL-~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hccCcc
Confidence 357889999999999999999987666655432 13567889999999999999999876555 4666
Q ss_pred CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCC
Q 005434 207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN 286 (697)
Q Consensus 207 ~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 286 (697)
.++.+..++++++..+|.+...|..-.-+-.. ++.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-----------l~~---------------------------------- 159 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQ-----------AAV---------------------------------- 159 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TTC----------------------------------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------hCc----------------------------------
Confidence 48999999999999999999999654322111 010
Q ss_pred CCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccc-c----------CcHHHHHHHHHH
Q 005434 287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-A----------QSDDMHDKILSD 355 (697)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~-~----------~~~~~~~~il~~ 355 (697)
..+.+...++++++..|.+...|.....++..+.. . .....+-..+..
T Consensus 160 ---------------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 160 ---------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 01245667788888889888888776666655421 0 012345556788
Q ss_pred HHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHH-HHhcCCcccccCC
Q 005434 356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLM-DMIAPKKEETRDS 434 (697)
Q Consensus 356 ~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~-~~~~~~~~~~~~~ 434 (697)
++...|++...|.++.-......+.. .. .....+.++.+.+.+++.++.-|+.+ |....-... ..+.
T Consensus 219 ai~~~P~d~SaW~Y~r~ll~~~~~~~-~~-~~~~~~~l~~el~~~~elle~~pd~~-w~l~~~~~~~~~~~--------- 286 (331)
T 3dss_A 219 AFFTDPNDQSAWFYHRWLLGAGSGRC-EL-SVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALD--------- 286 (331)
T ss_dssp HHHHSTTCHHHHHHHHHHHHSSSCGG-GC-CHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHC---------
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCcc-cc-chHHHHHHHHHHHHHHHHHhhCcccc-hHHHHHHHHHHhhc---------
Confidence 89999999999987654443211100 00 01123678899999999999888764 542111111 1111
Q ss_pred CCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 435 ~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
..+..+.++..+++.++.+|....-|.+.
T Consensus 287 -----~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 287 -----PLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp -----TTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -----ccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 01334578888999998899876666554
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.33 E-value=2.7e-06 Score=98.02 Aligned_cols=165 Identities=12% Similarity=-0.052 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccc
Q 005434 442 HYISHLLTVYEKAE--------AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (697)
Q Consensus 442 ~~~~~ar~~ye~al--------~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (697)
+..+.|...|++++ ..+|.+...|...+..+...|++++|...+++++ ...|++...|..+.......+
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g-- 481 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA-ERVGWRWRLVWYRAVAELLTG-- 481 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHT--
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCcchHHHHHHHHHHHHHcC--
Confidence 55789999999999 8889999999999999999999999999999999 789999999998888887776
Q ss_pred CCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHH
Q 005434 514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV 591 (697)
Q Consensus 514 ~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~ 591 (697)
+.+++.+.|++|++.-|.. ...|......+...+ +. ...|++++..-+. ....+......+
T Consensus 482 --------~~~~A~~~~~~al~l~P~~--~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~~a~~~lg~~~ 544 (681)
T 2pzi_A 482 --------DYDSATKHFTEVLDTFPGE--LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VISAAFGLARAR 544 (681)
T ss_dssp --------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hHHHHHHHHHHH
Confidence 4789999999999877654 344444433333333 34 6677777754211 222233333445
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 005434 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN 626 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~ 626 (697)
...|++++|...|++++...|.....+...+....
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 66788888888888888888777776666555543
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.32 E-value=1.7e-05 Score=89.20 Aligned_cols=161 Identities=10% Similarity=-0.095 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..++|...|++++..+|.+...|...+..+...|++++|...+++++ ...|++...|.....+....+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g---------- 71 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGHPEAVARLGRVRWTQQ---------- 71 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTCHHHHHHHHHHHHHTT----------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------
Confidence 456789999999999999999999999999999999999999999999 889999999998888877766
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR 601 (697)
+.+++.+.|+++++..|.. ...|...+ ..+...|++++|.
T Consensus 72 ~~~~A~~~~~~al~~~p~~--~~~~~~la--------------------------------------~~~~~~g~~~~A~ 111 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEH--PGIALWLG--------------------------------------HALEDAGQAEAAA 111 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHH--------------------------------------HHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC--HHHHHHHH--------------------------------------HHHHHcCCHHHHH
Confidence 4788888999998876542 23332211 1123467888899
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHhhCCCCchHHH
Q 005434 602 EMYKRFLALPRPGLVLYQNCIELENNL---ASVGDKDSLVNARKLFESALATYDQNTSLWR 659 (697)
Q Consensus 602 ~iy~~~i~~~p~~~~~~~~~i~lE~~~---~~~~~~~~~~raR~lye~al~~~~~~~~lW~ 659 (697)
+.|++++...|.....+...+.+...+ + +.+.|...|++++...|.+...|.
T Consensus 112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWR------ALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT------THHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhccc------cHHHHHHHHHHHHhcCCcccChHH
Confidence 999999988888888777777777777 6 888999999999998886554443
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.31 E-value=4.4e-06 Score=96.22 Aligned_cols=167 Identities=9% Similarity=-0.065 Sum_probs=135.1
Q ss_pred hhhhHHHHHHHHHH--------hcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 307 QGLRVLQTIYSGAV--------EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 307 ~~~~~a~~iy~~al--------~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
.+.+.|...|++++ +..|++.+.+...-..+...+ ..+.+...++++++..|+++..|..++..+..
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 479 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELL-- 479 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--
Confidence 45688999999999 777888777776666554433 35788899999999999999999999998875
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~ 457 (697)
.++++.|...|+++++..|... .|......... .+..+. ...|++|+..
T Consensus 480 -----------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~------------------~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 480 -----------TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL------------------AGNTDE-HKFYQTVWST 529 (681)
T ss_dssp -----------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH------------------HTCCCT-TCHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCChHH-HHHHHHHHHh
Confidence 5889999999999999988754 44444333332 233456 7889999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (697)
+|.+...|...+..+...|++++|...+++++ ...|++...|.........
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 7899999999877766543
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.29 E-value=1.2e-05 Score=90.33 Aligned_cols=163 Identities=12% Similarity=0.066 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l 219 (697)
..+...|++++...|++...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+.+.|...|++++
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999888877 578999999999999999999999999986 7999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhh
Q 005434 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (697)
Q Consensus 220 ~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (697)
...|++...|..+.......
T Consensus 85 ~~~p~~~~~~~~la~~~~~~------------------------------------------------------------ 104 (568)
T 2vsy_A 85 DAAPEHPGIALWLGHALEDA------------------------------------------------------------ 104 (568)
T ss_dssp HHCTTCHHHHHHHHHHHHHT------------------------------------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHHc------------------------------------------------------------
Confidence 99999888887666544321
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHH
Q 005434 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA 371 (697)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a 371 (697)
++.+.|...|+++++..|++...+..+...+.........+.+...++++++..|++...|..++
T Consensus 105 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 105 -------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp -------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 12356788888888888887777777666665541112356778888888888888766665544
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.28 E-value=0.00012 Score=75.04 Aligned_cols=243 Identities=8% Similarity=0.039 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch--HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHH
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS--QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD 422 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~--~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~ 422 (697)
.+.+-...+.++...|+....|......... .+ .++.+...++.++...|... +|..=-..+..
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-------------l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKN-------------LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------------CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-------------cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 3567788889999999999999988776543 23 78999999999999988765 77643333321
Q ss_pred HhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhccCCCcHHHH
Q 005434 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--EARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~--~A~~l~~~al~~~~P~~~~lW 500 (697)
...... . .+..+.....+++++..+|.+...|..-.-++...|..+ ++.+.+++++ ...|.+...|
T Consensus 116 ~~~~l~-~----------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d~~N~sAW 183 (306)
T 3dra_A 116 IMELNN-N----------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTDLKNNSAW 183 (306)
T ss_dssp HHHHTT-T----------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCTTCHHHH
T ss_pred HHHhcc-c----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhCCCCHHHH
Confidence 110000 0 023578889999999999999999988887788888887 9999999999 7999999999
Q ss_pred HHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCC
Q 005434 501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGG 577 (697)
Q Consensus 501 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~---~~~~~l~~~a~~~~~~~~~~ 577 (697)
..+..+....+.. .+....++..+.+.++|..-|.. ...|......+...+ +.+...+++++. .....
T Consensus 184 ~~R~~ll~~l~~~----~~~~~~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~---~~~~~ 254 (306)
T 3dra_A 184 SHRFFLLFSKKHL----ATDNTIDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSITQLEEFSLQFVD---LEKDQ 254 (306)
T ss_dssp HHHHHHHHSSGGG----CCHHHHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGGGGHHHHHTTEE---GGGTE
T ss_pred HHHHHHHHhcccc----chhhhHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChHHHHHHHHHHHh---ccCCC
Confidence 9887776554320 00112566677788888877755 456864332222222 112222222221 00000
Q ss_pred CCCCChHHHHHHHHHHhCCHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 005434 578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLA-LPRPGLVLYQNCI 622 (697)
Q Consensus 578 ~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~-~~p~~~~~~~~~i 622 (697)
..........++.+.+.|+.++|.++|+.++. ..|....+|...+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 00111122223334456888888888888886 6777777777654
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.25 E-value=3e-05 Score=74.75 Aligned_cols=92 Identities=7% Similarity=0.028 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434 141 ARILEIYRLAVMRFKGDIELWFK----------------YMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~----------------y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~ 203 (697)
..+...|++++...|++...|.. .+......| +..+...|++++..+|+++..|...+....
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~- 99 (208)
T 3urz_A 21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV- 99 (208)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 34445555555555555555544 444433333 344555555555555555555555555543
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 204 HNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
..|+.+.|...|++++...|++...|....
T Consensus 100 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 100 CRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555555555555555555544444443
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.24 E-value=8.8e-05 Score=72.29 Aligned_cols=192 Identities=10% Similarity=-0.040 Sum_probs=124.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 461 ~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
++..+...+..+...|++++|...+++++ ..+|.+ ...|..........+ +.+++.+.|+++++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNA----------DLPLAQAAIDRFIRLN 71 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHC
Confidence 34566666777788899999999999988 677765 356665555555555 4788888899988877
Q ss_pred ChhhhH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH
Q 005434 538 SALESE-SLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV 616 (697)
Q Consensus 538 p~~~~~-~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~ 616 (697)
|..... ..|......+...+ ...+... ..........|+.++|...|++++...|.+..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~---~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALD---DSALQGF-----------------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH---C-------------------------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred cCCCcHHHHHHHHHHHHHhhh---hhhhhhh-----------------hccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 754321 11111110000000 0000000 00011112356788999999999998887754
Q ss_pred HHH-----------------HHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHhcCChhhHHH
Q 005434 617 LYQ-----------------NCIELENNLASVGDKDSLVNARKLFESALATYDQNT---SLWRDYYSTETKLGTSETATA 676 (697)
Q Consensus 617 ~~~-----------------~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~---~lW~~y~~fE~~~G~~~~a~~ 676 (697)
.+. ..+.+....+ +.+.|...|++++..+|.++ +.|...+..-...|+.+.|..
T Consensus 132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 132 TTDATKRLVFLKDRLAKYEYSVAEYYTERG------AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 331 2233334455 88999999999999999664 678888888888999999999
Q ss_pred HHHHHHhhcCCcc
Q 005434 677 VYWRARKTLKDST 689 (697)
Q Consensus 677 vy~ral~~~~~~~ 689 (697)
.+.++...-|+++
T Consensus 206 ~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 206 VAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHCCSCCC
T ss_pred HHHHHHhhCCCch
Confidence 9999988877764
No 93
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=2.1e-05 Score=66.91 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|...+......+ +..+...|++++...|.++.+|...+.... ..|+.+.|...|+++
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 566788999999999999999999999888777 578999999999999999999999999885 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRME 236 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E 236 (697)
+...|++..+|..+..+.
T Consensus 99 ~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 99 LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHhh
Confidence 999999998888776654
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.22 E-value=0.00052 Score=72.02 Aligned_cols=263 Identities=10% Similarity=-0.003 Sum_probs=167.4
Q ss_pred chHHHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc--H----
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIF-DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT--E---- 462 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw-~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~--~---- 462 (697)
.++++.|...+++++...|...-+ ...+-....... ...+..+.++..|++++...+.. +
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL-------------HCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHH-------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHH-------------HhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 477899999999999987754311 111111111110 02456788999999988753322 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKL--------SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~--------P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
......+..+...|++++|...+++++ ... |.....+.....+....| +.+++...+++++
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al 162 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAF-QLINEQHLEQLPMHEFLVRIRAQLLWAWA----------RLDEAEASARSGI 162 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCTTSTHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhccccCcHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHH
Confidence 224556778889999999999999988 322 222334443444444444 4789999999999
Q ss_pred hhcChh---hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHH-----HHHHHHHhCCHHHHHHHH
Q 005434 535 TKVSAL---ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSA-----IINLVIQKDGIQQAREMY 604 (697)
Q Consensus 535 ~~~p~~---~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~-----yl~~~~~~~~~~~AR~iy 604 (697)
...+.. .....+..........+ +.+...+++++....... ....+.. .+......|++++|+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK----YHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC----cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 865431 12233333333333333 567788888876543221 1112222 122245789999999999
Q ss_pred HHHHhCCCCC----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC-C-----chHHHHHHHHHHhcCChhhH
Q 005434 605 KRFLALPRPG----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-N-----TSLWRDYYSTETKLGTSETA 674 (697)
Q Consensus 605 ~~~i~~~p~~----~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~-~-----~~lW~~y~~fE~~~G~~~~a 674 (697)
++++...|.. ...+...+.+....+ +.+.|..+++.++...+. . ..++..........|+.+.|
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLG------EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 9999865532 123455566666777 889999999999887552 1 14666677777888999999
Q ss_pred HHHHHHHHhhcC
Q 005434 675 TAVYWRARKTLK 686 (697)
Q Consensus 675 ~~vy~ral~~~~ 686 (697)
...+.+|+...+
T Consensus 313 ~~~l~~al~~~~ 324 (373)
T 1hz4_A 313 QRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=2.9e-06 Score=77.65 Aligned_cols=91 Identities=5% Similarity=-0.141 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
..|++++...|++...|......+...| +..+...|++++..+|.++..|...+.... ..|+++.|...|+++++..|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCC
Confidence 3566788889999999999988888777 678999999999999999999999998885 79999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005434 224 TSEELWVEYLRME 236 (697)
Q Consensus 224 ~~~~lW~~y~~~E 236 (697)
+++..|.......
T Consensus 102 ~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 102 NDYTPVFHTGQCQ 114 (151)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9988887766544
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=0.0011 Score=68.39 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHH
Q 005434 174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN----------VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243 (697)
Q Consensus 174 ~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~----------~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~ 243 (697)
.++..+++.+|..+|.+..+|..-..... ..+. ++.+..+++.++..+|.+..+|..-..+...
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~-~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~----- 120 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR----- 120 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHH-HhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-----
Confidence 47999999999999999999987766553 3333 6789999999999999999999765433211
Q ss_pred HHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcC
Q 005434 244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL 323 (697)
Q Consensus 244 ~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~ 323 (697)
++. ..++.+..+++++++..
T Consensus 121 ------l~~------------------------------------------------------~~~~~EL~~~~k~l~~d 140 (331)
T 3dss_A 121 ------LPE------------------------------------------------------PNWARELELCARFLEAD 140 (331)
T ss_dssp ------CSS------------------------------------------------------CCHHHHHHHHHHHHHHC
T ss_pred ------cCc------------------------------------------------------ccHHHHHHHHHHHHHhC
Confidence 110 01235677899999999
Q ss_pred CCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCC-CCCCcCccchHHHHHHHHHHH
Q 005434 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK-DGTSEDIVPSQMQKAIQVYEE 402 (697)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~-~~~~~~~~~~~~~~a~~vye~ 402 (697)
|.++..|..-.-++..++. ..+.+-..++++++.+|.+...|...+.......... .+.......+.++.+.+.+.+
T Consensus 141 prNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 141 ERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp TTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 9998888665555555542 1345667788999999999999988766543211000 000000113678999999999
Q ss_pred HhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----hcC
Q 005434 403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL-----QLG 476 (697)
Q Consensus 403 al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~-----~~~ 476 (697)
++...|... .|. |..+......... .......+.++++...++++++..|.+ .|+...-.+. ..|
T Consensus 219 ai~~~P~d~SaW~-Y~r~ll~~~~~~~------~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~ 289 (331)
T 3dss_A 219 AFFTDPNDQSAWF-YHRWLLGAGSGRC------ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLL 289 (331)
T ss_dssp HHHHSTTCHHHHH-HHHHHHHSSSCGG------GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTT
T ss_pred HHHhCCCCHHHHH-HHHHHHHhccCcc------ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccc
Confidence 999999876 787 5666554221000 000112367889999999999999987 5653322211 245
Q ss_pred CHHHHHHHHHHHhhccCCCcHHHHH
Q 005434 477 KLDEARKLAAKLCSGKLSDSVQLWL 501 (697)
Q Consensus 477 ~~~~A~~l~~~al~~~~P~~~~lW~ 501 (697)
..++++..+.+.+ ...|--..-|.
T Consensus 290 ~~~~~~~~l~~l~-~~Dp~r~~~y~ 313 (331)
T 3dss_A 290 YEKETLQYFSTLK-AVDPMRAAYLD 313 (331)
T ss_dssp THHHHHHHHHHHH-HHCGGGHHHHH
T ss_pred cHHHHHHHHHHHH-HhCcchhhHHH
Confidence 6677777788777 56676555554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.20 E-value=4.7e-05 Score=66.10 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
.++++.|..+|+++++..|... .|......... .+..+.+...|++++..+|.++..|...
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK------------------QGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH------------------hcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 4778999999999998776543 44333333222 3457899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
+..+...|++++|..++++++ ...|.+...|.....+....+ +.+.+.+.|.+++...|
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQG----------DYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHc----------cHHHHHHHHHHHHccCC
Confidence 999999999999999999999 788988899988887776655 47888888999887554
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=1.1e-05 Score=73.35 Aligned_cols=90 Identities=7% Similarity=-0.139 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
..|++++...|++...|...+......| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence 3678899999999999999998888877 578999999999999999999999999885 79999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 005434 224 TSEELWVEYLRM 235 (697)
Q Consensus 224 ~~~~lW~~y~~~ 235 (697)
+++..|......
T Consensus 87 ~~~~~~~~lg~~ 98 (148)
T 2vgx_A 87 XEPRFPFHAAEC 98 (148)
T ss_dssp TCTHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 988887665543
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.20 E-value=2.7e-05 Score=75.03 Aligned_cols=150 Identities=8% Similarity=-0.006 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHR----------------YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~----------------y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
+..+.|...|++++..+|.++..|.. .+..+...|++++|...+++++ ...|++...|.....
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL-QKAPNNVDCLEACAE 96 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHH
Confidence 56889999999999999999999988 9999999999999999999999 799999999999988
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGF 581 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~----~~~~~l~~~a~~~~~~~~~~~~~~ 581 (697)
+....| +.+.+.+.|++++..-|.. ...|......+...+ ..+...|++++. . .+
T Consensus 97 ~~~~~g----------~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----~----~~ 155 (208)
T 3urz_A 97 MQVCRG----------QEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSS-----P----TK 155 (208)
T ss_dssp HHHHHT----------CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----C----CH
T ss_pred HHHHcC----------CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----C----Cc
Confidence 888776 4789999999999877643 455554443332222 122333333221 0 11
Q ss_pred ChHHHH-HHH-HHHhCCHHHHHHHHHHHHhCCCC
Q 005434 582 SLPSAI-INL-VIQKDGIQQAREMYKRFLALPRP 613 (697)
Q Consensus 582 ~l~~~y-l~~-~~~~~~~~~AR~iy~~~i~~~p~ 613 (697)
.-+..| ... ....|++++|...|++++...|.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 111111 111 23468899999999999998875
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=6.1e-06 Score=75.46 Aligned_cols=124 Identities=5% Similarity=0.008 Sum_probs=98.7
Q ss_pred HHHHHHHhhHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHH
Q 005434 70 EISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRL 149 (697)
Q Consensus 70 Ei~~i~~kR~~fE~~l~r~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyer 149 (697)
.|.++++....+...|..+|.+...|.....--..+ .-...+...|++
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~--------------------------------g~~~eA~~~~~~ 61 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNK--------------------------------GRIEEAEVFFRF 61 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc--------------------------------CCHHHHHHHHHH
Confidence 345566666667777777766665554333211100 115677899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCH
Q 005434 150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (697)
Q Consensus 150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~ 226 (697)
++...|++...|......+...| +..+...|++++..+|+++..|...+.... ..|+.+.|...|++++...|+++
T Consensus 62 al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999888877 679999999999999999999999999886 89999999999999999999853
No 101
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.18 E-value=0.00098 Score=72.46 Aligned_cols=319 Identities=10% Similarity=-0.011 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcC
Q 005434 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (697)
Q Consensus 308 ~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~ 387 (697)
+.+.|...|++|++.-+. .....+-.++...........+...+..... +.++..+..++..+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~-------- 156 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGT-------- 156 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC--------
Confidence 345677788888774322 2333343444332211111122222222222 2335666777777654311
Q ss_pred ccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Q 005434 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (697)
Q Consensus 388 ~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~ 467 (697)
.....+.+..+++.+....|... ........... ...+.+++...|++|...++.....+..
T Consensus 157 -~~~~~~~a~~~~~~a~~~~~~a~--~~Lg~~~~~~g---------------~~~~~~~A~~~~~~aa~~g~~~a~~~~~ 218 (452)
T 3e4b_A 157 -YDQHLDDVERICKAALNTTDICY--VELATVYQKKQ---------------QPEQQAELLKQMEAGVSRGTVTAQRVDS 218 (452)
T ss_dssp -GGGGHHHHHHHHHHHTTTCTTHH--HHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred -cccCHHHHHHHHHHHHcCCHHHH--HHHHHHHHHcC---------------CcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 23456667777777776666521 11111111110 1346788889999999888888887777
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhH
Q 005434 468 YVTLYLQL----GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESE 543 (697)
Q Consensus 468 y~~l~~~~----~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~ 543 (697)
.+.++... +++++|...++++. |.+...+.....+...... ..+.+++.+.|++|+..-.+. .
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~-------~~d~~~A~~~~~~Aa~~g~~~--A 285 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPE-------LGDVEQMMKYLDNGRAADQPR--A 285 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGG-------GCCHHHHHHHHHHHHHTTCHH--H
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHCCCHH--H
Confidence 77777554 68889999998876 5555666655554221111 015788888888887643322 1
Q ss_pred HHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCC
Q 005434 544 SLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-----GIQQAREMYKRFLALPRP 613 (697)
Q Consensus 544 ~lW~~y~~~~~~-----~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~-----~~~~AR~iy~~~i~~~p~ 613 (697)
...+-. -|... ..+.+...|++|. +. .. .....+-.+...| +.++|...|+++.....+
T Consensus 286 ~~~Lg~-~y~~G~g~~~d~~~A~~~~~~Aa----~g-----~~-~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 286 ELLLGK-LYYEGKWVPADAKAAEAHFEKAV----GR-----EV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHH-HHHHCSSSCCCHHHHHHHHHTTT----TT-----CH-HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHH-HHHcCCCCCCCHHHHHHHHHHHh----CC-----CH-HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 111111 12222 1134556666654 11 11 1112222333333 899999999999987666
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 005434 614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKT 684 (697)
Q Consensus 614 ~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~ 684 (697)
...+.+..+... ..+ ...+.++|...|++|...........+.-+.-...-++...+..+..+..+.
T Consensus 355 ~A~~~Lg~~y~~-G~g---~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 355 SADFAIAQLFSQ-GKG---TKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp THHHHHHHHHHS-CTT---BCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCC---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666656655432 222 2338899999999999764332333333332222234555666666655444
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.13 E-value=1.9e-05 Score=69.51 Aligned_cols=86 Identities=6% Similarity=-0.128 Sum_probs=71.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHH
Q 005434 150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL 228 (697)
Q Consensus 150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~l 228 (697)
+....|...+.|..-.....+.| +..+...|++++..+|.++.+|...+.... ..|+.+.|...|+++++..|++...
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34456777777877777777766 678999999999999999999999999886 7999999999999999999999888
Q ss_pred HHHHHHHH
Q 005434 229 WVEYLRME 236 (697)
Q Consensus 229 W~~y~~~E 236 (697)
|.......
T Consensus 84 ~~~lg~~~ 91 (126)
T 4gco_A 84 YIRKAACL 91 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665443
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.12 E-value=8.4e-06 Score=73.31 Aligned_cols=91 Identities=7% Similarity=-0.133 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
..|++++...|++...|...+..+...| +..+...|++++..+|.++.+|...+.... ..|+.+.|...|++++...|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence 4677788888999999998888877777 578999999999999999999999999885 79999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005434 224 TSEELWVEYLRME 236 (697)
Q Consensus 224 ~~~~lW~~y~~~E 236 (697)
+++.+|.......
T Consensus 84 ~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 84 NEPRFPFHAAECH 96 (142)
T ss_dssp TCTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9888876665443
No 104
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.12 E-value=0.00013 Score=77.13 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=143.7
Q ss_pred HhHHHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC----c---HHHHHHHHHHH
Q 005434 441 EHYISHLLTVYEKAEAM---GCL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD----S---VQLWLLRISVE 507 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~---~~~---~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~----~---~~lW~~~i~l~ 507 (697)
.+..+.|...|++|+.. .+. ...++...+..+...|++++|...+.+|+ ..++. . ...+.......
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHH
Confidence 35689999999999885 222 35678888999999999999999999998 44332 1 22333333333
Q ss_pred HHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCC
Q 005434 508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGF 581 (697)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~ 581 (697)
...+ +.+++.+.|++|+...+... ....+......+...+ +.+...|++++........ .+
T Consensus 195 ~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~ 261 (383)
T 3ulq_A 195 LDLK----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---LP 261 (383)
T ss_dssp HHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---GG
T ss_pred HHhc----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc---ch
Confidence 3334 47889999999997654321 1123332232233333 5778888888876544321 13
Q ss_pred ChHHHHH---HHHHHhCCHHHHHHHHHHHHhCCCC--CHH---HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC
Q 005434 582 SLPSAII---NLVIQKDGIQQAREMYKRFLALPRP--GLV---LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (697)
Q Consensus 582 ~l~~~yl---~~~~~~~~~~~AR~iy~~~i~~~p~--~~~---~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~ 653 (697)
.....+. ......|++++|...|++++...+. +.. .+.....+....+. ...++++..+++++ ...+.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~al~~~~~~-~~~~~ 337 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD---EEAIQGFFDFLESK-MLYAD 337 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC---HHHHHHHHHHHHHT-TCHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHC-cCHHH
Confidence 3333332 3355789999999999999986422 111 22233334444440 01256666666655 11112
Q ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 654 NTSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 654 ~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
...++...+..-...|+.+.|...|.+|+....
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 346777888888899999999999999988654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.10 E-value=0.00023 Score=69.28 Aligned_cols=188 Identities=14% Similarity=0.055 Sum_probs=120.2
Q ss_pred hhhhhhhhhHHHHHHHHHHhcCCCch---HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChh---hHHHHHHhhc
Q 005434 302 DLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKM 375 (697)
Q Consensus 302 ~~~~~~~~~~a~~iy~~al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~---~w~~~a~~~l 375 (697)
..+..++++.|...|+++++..|.+. +.+..+-..+..- .....+...++++++.+|+++. .+..++..+.
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 34455578899999999999888753 3344433333322 2467888999999999999865 5666666543
Q ss_pred ccCCCC----CCCC-cCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHH--HHHHhcCCcccccCCCCCchhHhHHHHH
Q 005434 376 TDSVSK----DGTS-EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF--LMDMIAPKKEETRDSELPSHVEHYISHL 447 (697)
Q Consensus 376 ~~~~~~----~~~~-~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a 447 (697)
...... .... .....+..++|...|+++++..|... .+...... ....+....-..+ ..-...+..+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a---~~~~~~~~~~~A 166 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA---EYYTERGAWVAV 166 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCHHHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCcHHHH
Confidence 210000 0000 00114789999999999999998764 34332211 1000000000000 000123567899
Q ss_pred HHHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 448 LTVYEKAEAMGCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 448 r~~ye~al~~~~~~~---~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
...|++++...|.++ +.+...+..+...|+.++|.+.++++. ...|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~-~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA-ANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCc
Confidence 999999999988875 678889999999999999999999888 677765
No 106
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.6e-05 Score=67.15 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++..+|...+......| +..+...|++++..+|+++..|...+.... ..|+.+.|...|+++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999986 799999999999999
Q ss_pred hhhC------CCCHHHHHHHHHHH
Q 005434 219 LRVC------PTSEELWVEYLRME 236 (697)
Q Consensus 219 l~~~------p~~~~lW~~y~~~E 236 (697)
++.. |.+..++....+..
T Consensus 99 l~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 99 RTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCcccCCchhHHHHHHHHHHHH
Confidence 9999 88777777665543
No 107
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.08 E-value=5.9e-05 Score=65.28 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|...+..+...+ ...+...|++++...|.++..|...+.... ..|+.+.|...|+++
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 456788999999999999999999999888777 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~ 237 (697)
+...|.+..+|..+..+..
T Consensus 107 ~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHH
Confidence 9999999888877776554
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.08 E-value=0.00013 Score=74.06 Aligned_cols=80 Identities=10% Similarity=-0.095 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
|.+...|...+......| +..+...|++++..+|+++.+|...+.... ..|+++.|...++++++..|++..+|....
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 566777888887777776 578999999999999999999999998886 789999999999999999998877776555
Q ss_pred HH
Q 005434 234 RM 235 (697)
Q Consensus 234 ~~ 235 (697)
..
T Consensus 80 ~~ 81 (281)
T 2c2l_A 80 QC 81 (281)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 109
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=98.08 E-value=3.6e-05 Score=73.37 Aligned_cols=134 Identities=11% Similarity=0.190 Sum_probs=99.4
Q ss_pred HHHHHhhHHHHHHHhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHH
Q 005434 72 SEIVKQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYR 148 (697)
Q Consensus 72 ~~i~~kR~~fE~~l~r---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iye 148 (697)
..+.+.|..||..|.. ...-+..|++||.|=.+-. . +. ......+..+++
T Consensus 49 ~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~y------------------------P-~g--~~~~s~L~~lLE 101 (223)
T 4aez_C 49 AGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNF------------------------P-QG--ETKTSGLVTLLE 101 (223)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHC------------------------T-TC--CCTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------c-CC--CcchhhHHHHHH
Confidence 3456789999999985 2455899999999953210 0 00 001223557999
Q ss_pred HHHHhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 149 LAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 149 ral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
||++.|.++ +++|+.|+++| .....+|.-+... .-....+|+.+|.+. +..|++..|..||++
T Consensus 102 rc~~~F~~~~rYknD~RyLklWl~Ya~~~-----~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 102 RCTREFVRNPLYKDDVRYLRIWMQYVNYI-----DEPVELFSFLAHHHIGQESSIFYEEYANYF-ESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHTTC-----SCHHHHHHHHHHTTCSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHCCcchhHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 999997766 58999999975 3566788877764 345789999999998 689999999999999
Q ss_pred hhhhCCCC-HHHHHHHHHHHHH
Q 005434 218 GLRVCPTS-EELWVEYLRMELT 238 (697)
Q Consensus 218 ~l~~~p~~-~~lW~~y~~~E~~ 238 (697)
|++.+..- ..|-..|-.|+.+
T Consensus 176 Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 176 GKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHTCBSHHHHHHHHHHHHHH
T ss_pred HHHcCCccHHHHHHHHHHHHHH
Confidence 99998542 4677777777654
No 110
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.7e-05 Score=70.79 Aligned_cols=140 Identities=13% Similarity=0.144 Sum_probs=100.1
Q ss_pred HHHHHhhHHHHHHHhC---CC-CChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHH-HH
Q 005434 72 SEIVKQRRKFEYRLKR---PS-PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARIL-EI 146 (697)
Q Consensus 72 ~~i~~kR~~fE~~l~r---~~-~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~i 146 (697)
.++-..|..||..|.. .. .-+..|++||.|=.+.. +.| .......+. .+
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y-----------------P~g---------~~~~~s~L~~~l 59 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY-----------------IEV---------DSESGQEVLRST 59 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH-----------------HHH---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC-----------------CCC---------CCcchhchHHHH
Confidence 5667889999999998 33 33689999999943221 000 000123455 89
Q ss_pred HHHHHHhcCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434 147 YRLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (697)
Q Consensus 147 yeral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~ 215 (697)
+|||++.|-++ +++|+.|++++..........+|.-+... --..+.+|+.+|.+. +..|++..|..+|
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLL-ENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 99999976544 47999999996211122567788877664 345789999999998 6899999999999
Q ss_pred HHhhhhCCCC-HHHHHHHHHHHHH
Q 005434 216 QNGLRVCPTS-EELWVEYLRMELT 238 (697)
Q Consensus 216 ~r~l~~~p~~-~~lW~~y~~~E~~ 238 (697)
++|++.+..- ..|-..|-.|+.+
T Consensus 139 ~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 139 ELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHHHH
Confidence 9999998542 4677777777654
No 111
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.07 E-value=0.00012 Score=74.50 Aligned_cols=238 Identities=8% Similarity=-0.016 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhcCCch-hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005434 395 KAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL 473 (697)
Q Consensus 395 ~a~~vye~al~~~~~~-~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~ 473 (697)
+|..++++|-+.++++ ..| .|... + . .+..+.|...|++|. .++.
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~~~~-------~--~----------~~~~~~A~~~~~~a~--------------~~~~ 48 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KLFSG-------S--D----------SYKFEEAADLCVQAA--------------TIYR 48 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HHHSC-------C--S----------HHHHHHHHHHHHHHH--------------HHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hhcCC-------C--C----------CccHHHHHHHHHHHH--------------HHHH
Confidence 3667788888888764 355 33210 0 0 134677888888873 3566
Q ss_pred hcCCHHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hH
Q 005434 474 QLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SE 543 (697)
Q Consensus 474 ~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~ 543 (697)
..|++++|...+.+|+ ...+. ....|.....+....| +.+++...|++|+...+... ..
T Consensus 49 ~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGG----------NSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999988 43221 2445555555555554 47888888999987553211 23
Q ss_pred HHHHHHHHHHHhh-h--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHH----
Q 005434 544 SLWLMALKFFMNQ-K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV---- 616 (697)
Q Consensus 544 ~lW~~y~~~~~~~-~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~---- 616 (697)
..|......+... + +.+...|++|+...+..........+...........|++++|...|++++...|....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3454444444442 3 67788899998876543210000111223344566789999999999999998775432
Q ss_pred ---HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCch-----HHHHHHH-HHH-hcCChhhHHHHHHHHHh
Q 005434 617 ---LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-----LWRDYYS-TET-KLGTSETATAVYWRARK 683 (697)
Q Consensus 617 ---~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~-----lW~~y~~-fE~-~~G~~~~a~~vy~ral~ 683 (697)
.+.........++ +.+.|...|++++...|.... ++..... ++. ..|+.+.|...|.++++
T Consensus 198 ~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAAT------DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTT------CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 4555555566677 899999999999998884332 2322222 221 34666677776665543
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.07 E-value=6.1e-05 Score=70.04 Aligned_cols=96 Identities=9% Similarity=0.066 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcCCH--HHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW-EFDHNLNV--TAARALM 215 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~-e~~~~~~~--~~aR~~~ 215 (697)
...+...|++++...|.+...|...+..+...| +..+...|++++...|.++.+|..++.. .. ..|+. +.|...|
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMI 104 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHH
Confidence 344567899999999999999999999988877 5789999999999999999999999988 54 67888 9999999
Q ss_pred HHhhhhCCCCHHHHHHHHHHH
Q 005434 216 QNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 216 ~r~l~~~p~~~~lW~~y~~~E 236 (697)
++++...|.+..+|...+...
T Consensus 105 ~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 105 DKALALDSNEITALMLLASDA 125 (177)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHH
Confidence 999999999888887766544
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.05 E-value=3e-05 Score=69.58 Aligned_cols=93 Identities=8% Similarity=-0.066 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|......+...| +..+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL-QLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 567788999999999999999999999888877 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYL 233 (697)
Q Consensus 219 l~~~p~~~~lW~~y~ 233 (697)
+...|.++..+....
T Consensus 113 l~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 113 RALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHTCGGGHHHHH
T ss_pred HHhCCCCcchHHHHH
Confidence 999998776654433
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.04 E-value=0.0012 Score=68.61 Aligned_cols=259 Identities=12% Similarity=0.100 Sum_probs=157.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG 251 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~-~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~ 251 (697)
..++..+++++|..+|.+..+|..-..... ..+ .++.+...++.+|..+|++..+|..-..+.... .+
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l----------~~ 138 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI----------SP 138 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----------CC
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----------cC
Confidence 357888999999999999999988777664 566 589999999999999999988887654332110 00
Q ss_pred cccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHH
Q 005434 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~ 331 (697)
. ..+.+...++++++..|.+...|.
T Consensus 139 ~-------------------------------------------------------~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 139 Q-------------------------------------------------------DPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp S-------------------------------------------------------CCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred C-------------------------------------------------------ChHHHHHHHHHHHHhCCCCHHHHH
Confidence 0 012445677888888888877775
Q ss_pred HHHHHHHHccccC-----cHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhc
Q 005434 332 RFFEIVEATNLAQ-----SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN 406 (697)
Q Consensus 332 ~~~~~~~~fe~~~-----~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~ 406 (697)
.-.-++..++... ....+-..++++++..|.+...|............. ......++.+.+.+++++..
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------ETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHHHHh
Confidence 5444444433211 012455567889999999999998877665321100 00124578899999999999
Q ss_pred CCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHH-HHHHHHHHHH---c------CCCcHHHHHHHHHHHHhc
Q 005434 407 VPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH-LLTVYEKAEA---M------GCLTEDIAHRYVTLYLQL 475 (697)
Q Consensus 407 ~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ar~~ye~al~---~------~~~~~~lw~~y~~l~~~~ 475 (697)
.|... .|. |..+..........+ .+..+.-.....++- .-.+-+.|+. . ++.++-.+.-.++++...
T Consensus 238 ~P~n~SaW~-Ylr~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 315 (349)
T 3q7a_A 238 IPHNVSAWN-YLRGFLKHFSLPLVP-ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ 315 (349)
T ss_dssp CTTCHHHHH-HHHHHHHHTTCCSGG-GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHH-HHHHHHHhcCCCccc-ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence 99876 887 555544432111000 000000000000000 0011111211 1 145666777778888888
Q ss_pred CCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 476 GKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 476 ~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
|+.++|.++++.......|--...|.-++.
T Consensus 316 ~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 316 NRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 999999999988764566767778876554
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.04 E-value=0.00017 Score=71.73 Aligned_cols=191 Identities=11% Similarity=-0.045 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCCcHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRIS 505 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~--------~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i~ 505 (697)
+..+.|...|++++.. +|.....|...+..+...|++++|...+.+++ .. .|.....|.....
T Consensus 57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHH
Confidence 5578888888888865 34456788899999999999999999999998 43 2555666666666
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHhhc-------ChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCC
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILTKV-------SALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGG 576 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~-------p~~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~ 576 (697)
+....+ +.+++.+.|++++... ++ .....|...+..+...+ +.+...|++++........
T Consensus 136 ~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 136 LCQNQG----------KAEEVEYYYRRALEIYATRLGPDDP-NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHTTT----------CHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcC----------CHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 665555 4788999999998752 11 12344444444444333 5677888888875432110
Q ss_pred ---CCCCCChHHHHHHHHHH------hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 005434 577 ---GESGFSLPSAIINLVIQ------KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647 (697)
Q Consensus 577 ---~~~~~~l~~~yl~~~~~------~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~a 647 (697)
......++......... ...+..+...++.+....|.....+...+.+....| +.+.|..+|+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a 278 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG------KLEAAHTLEDCA 278 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 01122222222222211 122344444444444334444456777777777888 899999999999
Q ss_pred Hhh
Q 005434 648 LAT 650 (697)
Q Consensus 648 l~~ 650 (697)
+..
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 864
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.02 E-value=4.3e-05 Score=69.37 Aligned_cols=90 Identities=7% Similarity=-0.061 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|......+...| +..+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL-QXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 566788999999999999999999999888877 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHH
Q 005434 219 LRVCPTSEELWV 230 (697)
Q Consensus 219 l~~~p~~~~lW~ 230 (697)
+...|+++..+.
T Consensus 116 l~~~p~~~~~~~ 127 (148)
T 2vgx_A 116 QELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCGGGHH
T ss_pred HHHCcCCCcchH
Confidence 999998776543
No 117
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.02 E-value=1.9e-05 Score=69.03 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|..........| ...+...|++++...|+++..|...+.... ..|+.+.|...|+++
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 456778999999999999999999998888777 568999999999999999999999988885 789999999999999
Q ss_pred hhhCCCCH
Q 005434 219 LRVCPTSE 226 (697)
Q Consensus 219 l~~~p~~~ 226 (697)
++..|...
T Consensus 112 l~~~P~~~ 119 (121)
T 1hxi_A 112 LLSQPQYE 119 (121)
T ss_dssp HC------
T ss_pred HHhCcCCC
Confidence 99999754
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.02 E-value=0.00026 Score=61.20 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccH
Q 005434 558 HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL 637 (697)
Q Consensus 558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~ 637 (697)
+.+..+|++++...+. ....+..........|+++.|..+|++++...|.....+...+.+....+ +.
T Consensus 18 ~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~ 85 (136)
T 2fo7_A 18 DEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG------DY 85 (136)
T ss_dssp HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CH
T ss_pred HHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc------CH
Confidence 4566777777653211 22223333444567899999999999999998888888888888877777 89
Q ss_pred HHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 638 VNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 638 ~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+.|..+|++++...|.++.+|...+......|+.+.|...+.+++..-|+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999998888899999999999999999999999999876554
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.00 E-value=9.8e-05 Score=63.21 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|..++..+...+ +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 456778999999999999999999999888777 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRME 236 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E 236 (697)
+...|.+..++.......
T Consensus 104 ~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 104 LELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHH
Confidence 999999888776665443
No 120
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.99 E-value=8.2e-05 Score=67.72 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=95.7
Q ss_pred hhHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHhc
Q 005434 77 QRRKFEYRLKRP--SPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF 154 (697)
Q Consensus 77 kR~~fE~~l~r~--~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~~ 154 (697)
.|..||..|... ..-+..|++||.|=.+-. . +. .....+..+++||++.|
T Consensus 2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~------------------------p-~~---~~~s~L~~lLErc~~~f 53 (164)
T 2wvi_A 2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQNY------------------------P-QG---GKESNMSTLLERAVEAL 53 (164)
T ss_dssp CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHHC------------------------C-C-------CCHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhcCCCCChHHHHHHHHHHHHHC------------------------c-CC---CccchHHHHHHHHHHHh
Confidence 478899999742 233789999999943210 0 00 01123557999999997
Q ss_pred CCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 005434 155 KGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (697)
Q Consensus 155 p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p 223 (697)
.++ +++|+.|+++| .....+|.-+... .-..+.+|+.+|.+. +..|++..|..||++|+..+.
T Consensus 54 ~~~~~YknD~RyLklWl~ya~~~-----~~p~~if~~L~~~~IG~~~AlfY~~wA~~l-E~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 54 QGEKRYYSDPRFLNLWLKLGRLC-----NEPLDMYSYLHNQGIGVSLAQFYISWAEEY-EARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp TTCGGGTTCHHHHHHHHHHHHHC-----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC
Confidence 654 57999999986 2356778777664 345789999999998 689999999999999999985
Q ss_pred C-CHHHHHHHHHHHHHHH
Q 005434 224 T-SEELWVEYLRMELTYL 240 (697)
Q Consensus 224 ~-~~~lW~~y~~~E~~~~ 240 (697)
. ...|-..|-.|+.+..
T Consensus 128 ~P~~~L~~~~~~F~~R~~ 145 (164)
T 2wvi_A 128 EPLERLQSQHRQFQARVS 145 (164)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 4 2478888888887643
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.99 E-value=4e-05 Score=66.85 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.+...|...+......+ ...+...|++++...|.++.+|...+.... ..|+++.|...|+++
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKA 110 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 356778999999999999999999998877766 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~ 237 (697)
+...|.+..+|..+..+..
T Consensus 111 ~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 111 LDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHCGGGTHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHH
Confidence 9999988888877766554
No 122
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=4.7e-05 Score=67.17 Aligned_cols=98 Identities=6% Similarity=-0.021 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++...|...+..+...+ +..+...|++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 567788999999999999999999999888877 578999999999999999999999999986 799999999999999
Q ss_pred hhhCCC-----CHHHHHHHHHHHHH
Q 005434 219 LRVCPT-----SEELWVEYLRMELT 238 (697)
Q Consensus 219 l~~~p~-----~~~lW~~y~~~E~~ 238 (697)
+...|+ ...+|.........
T Consensus 104 ~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 104 YSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999997 66777777665543
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.98 E-value=7.2e-05 Score=69.57 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHH-HHHHhcC
Q 005434 349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF-LMDMIAP 426 (697)
Q Consensus 349 ~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~-~~~~~~~ 426 (697)
+...++.+++..|+++..|..++..+.. .++++.|...|+++++..|... .|..+... ...
T Consensus 29 A~~~~~~al~~~p~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---- 91 (177)
T 2e2e_A 29 QLQALQDKIRANPQNSEQWALLGEYYLW-------------QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---- 91 (177)
T ss_dssp CCHHHHHHHHHCCSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Confidence 3445566667788888888888888865 4789999999999999888654 44444443 221
Q ss_pred CcccccCCCCCchhHhHH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434 427 KKEETRDSELPSHVEHYI--SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~--~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (697)
.+.. +.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...+
T Consensus 92 --------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~ 152 (177)
T 2e2e_A 92 --------------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM-DLNSPRINRT 152 (177)
T ss_dssp --------------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTSCHH
T ss_pred --------------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH-hhCCCCccHH
Confidence 1334 789999999999999999999999999999999999999999999 7788765443
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=9.7e-05 Score=74.89 Aligned_cols=179 Identities=9% Similarity=-0.016 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCcc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~ 521 (697)
+..+.|...|++|+..+|.++.+|...+..+...|++++|...+++++ ...|++...|..........+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g---------- 86 (281)
T 2c2l_A 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQSVKAHFFLGQCQLEME---------- 86 (281)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTCHHHHHHHHHHHHHTT----------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------
Confidence 568899999999999999999999999999999999999999999999 789999999998888877766
Q ss_pred chHHHHHHHHHHHhhcChhh---hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434 522 DILSIFELLKCILTKVSALE---SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~---~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~ 598 (697)
+.+++...|++++...|... ...+|.... .. ..... ....... . .....+...+..+. .|+.+
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~-----~~~~~-~~~~~~~--~---~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IA-----KKKRW-NSIEERR--I---HQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-HH-----HHHHH-HHHHHTC--C---CCCCHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-HH-----HHHHH-HHHHHHH--H---hhhHHHHHHHHHHH--HHHHH
Confidence 47889999999998665431 134554321 11 01111 1111111 1 11333333333332 68899
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~ 650 (697)
+|.+.|+++++..|.+..+......+..... ...+.++.+|+++...
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHD-----KYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHH-----HHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHH-----HHHHHHHHHHHhhhcc
Confidence 9999999999998876665555555554442 1678899999988764
No 125
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.96 E-value=0.075 Score=63.93 Aligned_cols=256 Identities=11% Similarity=0.089 Sum_probs=148.7
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC---HHHHH
Q 005434 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---EELWV 230 (697)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~---~~lW~ 230 (697)
.++..+|.+|+....+.| ...+...|.+| +++..|+..+... +..|+++.|-..|+.+....+.+ ..+=.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~-~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence 467888888888777766 46677777665 6778888888877 47888888888888888777542 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhh-hhhhhhhhhhhh
Q 005434 231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES-QKSVDLFREQGL 309 (697)
Q Consensus 231 ~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (697)
.|+++.. ...-..++.. +. ..++ .....+..++.+
T Consensus 1176 aYAKl~r-----leele~fI~~--------~n-------------------------------~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1176 ALAKTNR-----LAELEEFING--------PN-------------------------------NAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred HHHhhcC-----HHHHHHHHhC--------CC-------------------------------HHHHHHHHHHHHhcCCH
Confidence 3343311 0000001100 00 0001 111122233456
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCcc
Q 005434 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (697)
Q Consensus 310 ~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~ 389 (697)
+.|...|.+| ..|..+...+...+. .+.|-..+.++ .++..|...+.....
T Consensus 1212 eeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA-----~n~~aWkev~~acve------------- 1262 (1630)
T 1xi4_A 1212 DAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKA-----NSTRTWKEVCFACVD------------- 1262 (1630)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHh-----CCHHHHHHHHHHHhh-------------
Confidence 7788888876 234455555544331 22233333322 456777665555543
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
.+.+..|+..... +...|. ....-+.+.+. .+..+.+..+|+.|+..++.+..+|...+
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~d--eLeeli~yYe~------------------~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHAD--ELEELINYYQD------------------RGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHH--HHHHHHHHHHH------------------cCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 3556666665542 322221 11222333322 35688899999999998888888887777
Q ss_pred HHHHhc--CCHHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhcc
Q 005434 470 TLYLQL--GKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVT 512 (697)
Q Consensus 470 ~l~~~~--~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~ 512 (697)
.++.+. ++..++.+.+...+ ..|+ ...+|...+.+..+.++
T Consensus 1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 777765 34566677777666 3343 57899999988887764
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.96 E-value=7.6e-05 Score=65.05 Aligned_cols=111 Identities=14% Similarity=0.027 Sum_probs=87.3
Q ss_pred ChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhH
Q 005434 363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (697)
Q Consensus 363 ~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~ 441 (697)
+...|...+..... .++++.|...|+++++..|... .|......... .
T Consensus 3 ~a~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~------------------~ 51 (126)
T 3upv_A 3 KAEEARLEGKEYFT-------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------L 51 (126)
T ss_dssp HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred hHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------h
Confidence 34556666766654 4789999999999999988754 44433333222 3
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CCcHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRIS 505 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~ 505 (697)
+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ... |.+..++.....
T Consensus 52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HhCcccCCchhHHHHHHHHHH
Confidence 558899999999999999999999999999999999999999999999 677 777777655443
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.94 E-value=0.00044 Score=70.28 Aligned_cols=202 Identities=8% Similarity=-0.044 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHcCC-----C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGC-----L-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR 509 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~-----~-~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~ 509 (697)
+..+.|...|++|+...+ . ....|...+..+...|++++|...+++|+ ...|.. ...|.....+...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 446778888888877521 1 24678888999999999999999999999 554432 3455555555554
Q ss_pred h-cccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434 510 C-VTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS 582 (697)
Q Consensus 510 ~-~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~ 582 (697)
. + +.+++.+.|++|+...|... ...+|......+...+ +.+...|++++...+.... ....
T Consensus 130 ~lg----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~ 197 (292)
T 1qqe_A 130 DLH----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL--SQWS 197 (292)
T ss_dssp TTC----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT--TGGG
T ss_pred hhc----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc--ccHH
Confidence 3 4 47899999999998765321 1344555555554444 5677889988875432210 0012
Q ss_pred hHHHHHH---HHHHhCCHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC
Q 005434 583 LPSAIIN---LVIQKDGIQQAREMYKRFLALPRPGLV-----LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN 654 (697)
Q Consensus 583 l~~~yl~---~~~~~~~~~~AR~iy~~~i~~~p~~~~-----~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~ 654 (697)
....|.. .....|+++.|...|++++...|.... ++...+.... .+ +..+++.+-..|++++...|..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~-~~---~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EG---DSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TT---CTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-cC---CHHHHHHHHHHhccCCccHHHH
Confidence 2223332 245679999999999999998776432 2222221111 11 1226778888887777655433
Q ss_pred chHHHH
Q 005434 655 TSLWRD 660 (697)
Q Consensus 655 ~~lW~~ 660 (697)
..+|..
T Consensus 274 ~~~~~~ 279 (292)
T 1qqe_A 274 ITILNK 279 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.93 E-value=0.00027 Score=64.18 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|.+..+|...+......| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 567789999999999999999999999888777 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRM 235 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~ 235 (697)
+..+|.+..+|..+...
T Consensus 108 ~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 108 VKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHSTTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 99999998888555444
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=8.1e-05 Score=68.38 Aligned_cols=91 Identities=9% Similarity=0.091 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++++...|++..+|......+...+ +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF-DMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999986 799999999999999
Q ss_pred hhhCCCCHHHHHH
Q 005434 219 LRVCPTSEELWVE 231 (697)
Q Consensus 219 l~~~p~~~~lW~~ 231 (697)
++..|++...|..
T Consensus 106 l~~~p~~~~~~~~ 118 (164)
T 3sz7_A 106 IEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHSSSCCHHHH
T ss_pred HHhCCCchHHHHH
Confidence 9999998775543
No 130
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=8.1e-05 Score=66.31 Aligned_cols=96 Identities=8% Similarity=-0.093 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~ 215 (697)
...+...|++++...|++ ..+|..++......+ +.++...|++++..+|.++.+|...+.... ..|+.+.|...|
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~ 122 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE-KLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 566788999999999988 889988888877776 578999999999999999999999999886 789999999999
Q ss_pred HHhhhhCCCCHHHHHHHHHHH
Q 005434 216 QNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 216 ~r~l~~~p~~~~lW~~y~~~E 236 (697)
++++...|++..+|..+.++.
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 123 QRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999888776653
No 131
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.91 E-value=0.0002 Score=60.54 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=88.7
Q ss_pred hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (697)
Q Consensus 364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (697)
...|..++..... .++++.|...|++++...|... .|......... .+
T Consensus 4 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~ 52 (118)
T 1elw_A 4 VNELKEKGNKALS-------------VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KG 52 (118)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred HHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh------------------hc
Confidence 3456666766654 4789999999999999888653 44444333322 35
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (697)
..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.....+
T Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999 7899998888765544
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.89 E-value=0.00011 Score=63.60 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=93.3
Q ss_pred CChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchh
Q 005434 362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHV 440 (697)
Q Consensus 362 ~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~ 440 (697)
.+...|..++..... .++++.|...|++++...|... .|.........
T Consensus 10 ~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------ 58 (131)
T 2vyi_A 10 AEAERLKTEGNEQMK-------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK------------------ 58 (131)
T ss_dssp HHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------
T ss_pred hhhHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------
Confidence 345567777777764 4779999999999999887643 44433333322
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
.+..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|.....+....+
T Consensus 59 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-ELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHh
Confidence 3557899999999999999999999999999999999999999999999 788999888887766665544
No 133
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.89 E-value=7.3e-05 Score=67.08 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=92.6
Q ss_pred HhhHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhcccccccchhHHHHHHHHHHHHHHh
Q 005434 76 KQRRKFEYRLKRP--SPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR 153 (697)
Q Consensus 76 ~kR~~fE~~l~r~--~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iyeral~~ 153 (697)
.-|..||..|+.- ..-+..|++||.|=.+. .. . +...+..+++||++.
T Consensus 8 ~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~------------------------~P---~---g~~~l~~lLErc~~~ 57 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN------------------------FP---E---NKEYLITLLEHLMKE 57 (152)
T ss_dssp HHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT------------------------CS---S---CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH------------------------cC---C---CchhHHHHHHHHHHH
Confidence 3467899999873 23368999999994221 01 0 112377899999998
Q ss_pred cCCC---------HHHHHHHHHHHHHhcCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 005434 154 FKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (697)
Q Consensus 154 ~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~ 222 (697)
|.++ +++|+.|+++|. ....+|.-+... --..+.+|+.+|.+. +..|++..|..||++|++.+
T Consensus 58 f~~~~~YknD~RyLklWl~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 58 FLDKKKYHNDPRFISYCLKFAEYNS-----DLHQFFEFLYNHGIGTLSSPLYIAWAGHL-EAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HTTCGGGTTCHHHHHHHHHHHTTBS-----CHHHHHHHHHTTTTTTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTT
T ss_pred hcccccccCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC
Confidence 7543 579999999862 367788877654 345789999999998 68999999999999999998
Q ss_pred CCC-HHHHHHHHHHHH
Q 005434 223 PTS-EELWVEYLRMEL 237 (697)
Q Consensus 223 p~~-~~lW~~y~~~E~ 237 (697)
..- ..|-..|-.|..
T Consensus 132 A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 132 AEPREFLQQQYRLFQT 147 (152)
T ss_dssp CBSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 542 356666666653
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.88 E-value=0.00029 Score=64.02 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=85.5
Q ss_pred hhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHhH
Q 005434 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (697)
Q Consensus 365 ~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (697)
..|..+|..+.. .++++.|...|+++++..|... .|......... .+.
T Consensus 14 ~~~~~~a~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~------------------~~~ 62 (166)
T 1a17_A 14 EELKTQANDYFK-------------AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TEC 62 (166)
T ss_dssp HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------TTC
T ss_pred HHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCC
Confidence 446666666654 4789999999999999887643 44443333222 355
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (697)
Q Consensus 444 ~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (697)
.+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+
T Consensus 63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~ 121 (166)
T 1a17_A 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV-KVKPHDKDAKMKY 121 (166)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999 7899988887443
No 135
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00024 Score=63.15 Aligned_cols=116 Identities=11% Similarity=-0.066 Sum_probs=92.7
Q ss_pred CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHhcCCcccccCCC
Q 005434 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSE 435 (697)
Q Consensus 360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~----lw~~yi~~~~~~~~~~~~~~~~~~ 435 (697)
.|.+...|...+..... .++++.|...|+++++..|... .|.........
T Consensus 24 ~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~------------- 77 (148)
T 2dba_A 24 GASSVEQLRKEGNELFK-------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK------------- 77 (148)
T ss_dssp TCCCHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-------------
Confidence 34566777777877765 4789999999999999988752 33333332221
Q ss_pred CCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 436 ~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
.+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++..+|.....+.
T Consensus 78 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 78 -----LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV-SLEPKNKVFQEALRNIS 143 (148)
T ss_dssp -----TTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHH
T ss_pred -----HccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Confidence 3558899999999999999999999999999999999999999999999 78999988887665543
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.88 E-value=9e-05 Score=64.53 Aligned_cols=117 Identities=10% Similarity=-0.074 Sum_probs=91.3
Q ss_pred CCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCch
Q 005434 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (697)
Q Consensus 361 p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~ 439 (697)
|.++..|..++..+.. .++++.|...|+++++..|... .|........
T Consensus 13 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~------------------ 61 (133)
T 2lni_A 13 PDLALMVKNKGNECFQ-------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT------------------ 61 (133)
T ss_dssp SCHHHHHHHHHHHHHH-------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT------------------
T ss_pred cccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH------------------
Confidence 3446667777777765 4778999999999999887543 3333332211
Q ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 005434 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (697)
Q Consensus 440 ~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (697)
..+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+...
T Consensus 62 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL-DLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGTHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHH
Confidence 13557899999999999999999999999999999999999999999999 7889888888766655543
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.83 E-value=0.00036 Score=59.54 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=88.9
Q ss_pred hhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhcCCcccccCCCCCchhHh
Q 005434 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (697)
Q Consensus 364 ~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (697)
...|..++..+.. .++++.|...|+++++..|... .|......... .+
T Consensus 9 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~ 57 (125)
T 1na0_A 9 AEAWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK------------------QG 57 (125)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TT
T ss_pred HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH------------------hC
Confidence 5667778877765 4789999999999998877543 44444333322 34
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
..+.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+.....+.
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999 78898887776655443
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.82 E-value=0.00019 Score=60.15 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC--CchHHHHHHHH
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ--NTSLWRDYYST 664 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~--~~~lW~~y~~f 664 (697)
........|++++|...|++++...|.....+...+.+....+ +.+.|..+|++++...|. +..+|...+..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE------RYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444556899999999999999999988888888888887888 899999999999999998 88999999999
Q ss_pred HHhc-CChhhHHHHHHHHHhhcCCcc
Q 005434 665 ETKL-GTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 665 E~~~-G~~~~a~~vy~ral~~~~~~~ 689 (697)
.... |+.+.|...+.+++...++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999 999999999999999887653
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.81 E-value=8.2e-05 Score=77.62 Aligned_cols=123 Identities=11% Similarity=-0.011 Sum_probs=97.6
Q ss_pred HhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCch----------------hHHHHHHHHH
Q 005434 357 QRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----------------MIFDLYTKFL 420 (697)
Q Consensus 357 ~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~----------------~lw~~yi~~~ 420 (697)
....|+....|..++..+.. .++++.|...|++++...|.. ..|.......
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFK-------------EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788877765 478999999999999988865 2222222222
Q ss_pred HHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH
Q 005434 421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (697)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (697)
. ..+..+.|...|++|+..+|.++..|...+..+...|++++|...+++++ ...|++...|
T Consensus 207 ~------------------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~ 267 (336)
T 1p5q_A 207 L------------------KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL-QLYPNNKAAK 267 (336)
T ss_dssp H------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHH
T ss_pred H------------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCCCHHHH
Confidence 1 13568899999999999999999999999999999999999999999999 7899999988
Q ss_pred HHHHHHHHHhc
Q 005434 501 LLRISVEIRCV 511 (697)
Q Consensus 501 ~~~i~l~~~~~ 511 (697)
.....+....+
T Consensus 268 ~~l~~~~~~~~ 278 (336)
T 1p5q_A 268 TQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777766555
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.80 E-value=0.00033 Score=61.54 Aligned_cols=85 Identities=11% Similarity=-0.091 Sum_probs=73.2
Q ss_pred HhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHH
Q 005434 152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (697)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~ 230 (697)
...|.+...|...+..+...| +..+...|.+++..+|.++.+|...+.... ..|+++.|...|+++++..|++...|.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 345778999999999888877 578999999999999999999999999986 799999999999999999999888887
Q ss_pred HHHHHHH
Q 005434 231 EYLRMEL 237 (697)
Q Consensus 231 ~y~~~E~ 237 (697)
.......
T Consensus 82 ~l~~~~~ 88 (137)
T 3q49_B 82 FLGQCQL 88 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 141
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.79 E-value=0.0003 Score=61.08 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~---~~lW~~~a~~e~~~~~~~~~aR 212 (697)
...+...|++++..+|++. ..|...+......| +..+...|++++..+|++ +..|...+.... ..|+.+.|.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~ 96 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHH
Confidence 5677889999999999998 78888888777777 578999999999999999 888999998886 799999999
Q ss_pred HHHHHhhhhCCCCHHHHHHHHHHH
Q 005434 213 ALMQNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 213 ~~~~r~l~~~p~~~~lW~~y~~~E 236 (697)
..|++++...|+++..+....++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 97 QTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999877766655544
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.79 E-value=0.0024 Score=66.17 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch-HHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS-QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (697)
Q Consensus 347 ~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~-~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~ 424 (697)
+.+-.+++.++...|++...|......... .+ .++.+...++.++...|... +|..= .+....+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-------------l~~~l~eEL~~~~~~L~~nPKny~aW~hR-~wlL~~l 136 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTS-------------LNKSLEDELRLMNEFAVQNLKSYQVWHHR-LLLLDRI 136 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCCHHHHHHHHHHHHHTTCCCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHh
Confidence 457778889999999999999887766543 23 48899999999999988765 77643 3333222
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhccCCCc
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--------EARKLAAKLCSGKLSDS 496 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~--------~A~~l~~~al~~~~P~~ 496 (697)
.. ...+.....+++++..+|.+...|..-.-++...|..+ ++.+.+++++ ..+|.+
T Consensus 137 ~~---------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I-~~dp~N 200 (349)
T 3q7a_A 137 SP---------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML-RVDGRN 200 (349)
T ss_dssp CC---------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHCTTC
T ss_pred cC---------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-HhCCCC
Confidence 00 02457888999999999999999977665666555555 8889999999 789999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 497 VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 497 ~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
...|..+..+....+... ...+.+++..+.+.++|..-|.. ...|..
T Consensus 201 ~SAW~~R~~lL~~l~~~~---~~~~~~~eELe~~~~aI~~~P~n--~SaW~Y 247 (349)
T 3q7a_A 201 NSAWGWRWYLRVSRPGAE---TSSRSLQDELIYILKSIHLIPHN--VSAWNY 247 (349)
T ss_dssp HHHHHHHHHHHTTSTTCC---CCHHHHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 999998887765543210 01112566777788888877765 456863
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.78 E-value=0.00036 Score=72.68 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~ 203 (697)
...+...|++++...|.+ ..+|...+....+.+ +..+...|++++..+|+++..|...+....
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~- 241 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL- 241 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence 567889999999999999 699999999888877 578999999999999999999999999886
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005434 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKA 245 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~ 245 (697)
..|+++.|+..|+++++..|.+..+|.....+....+....+
T Consensus 242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999888887766655444
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.75 E-value=0.00019 Score=60.10 Aligned_cols=85 Identities=9% Similarity=-0.011 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhc-CCHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHN-LNVTAARALM 215 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~--~~~lW~~~a~~e~~~~-~~~~~aR~~~ 215 (697)
...+...|++++...|.+...|..++......+ +..+...|++++...|. ++.+|...+.... .. |+.+.|...|
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~ 100 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCCHHHHHHHH
Confidence 467788999999999999999999999888777 57899999999999999 9999999999986 89 9999999999
Q ss_pred HHhhhhCCCC
Q 005434 216 QNGLRVCPTS 225 (697)
Q Consensus 216 ~r~l~~~p~~ 225 (697)
.+++...|.+
T Consensus 101 ~~~~~~~p~~ 110 (112)
T 2kck_A 101 ARAKLEHHHH 110 (112)
T ss_dssp HHHGGGCCCC
T ss_pred HHHhhcccCC
Confidence 9999999975
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=5.6e-05 Score=65.23 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 142 RILEIYRLAVMR---FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (697)
Q Consensus 142 r~~~iyeral~~---~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r 217 (697)
.+...|++++.. .|++...|......+...| +..+...|++++..+|+++.+|...+.... ..|+.+.|...|++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLK 86 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 456789999998 6989999999999888877 678999999999999999999999999886 79999999999999
Q ss_pred hhhhCCCCHHHH
Q 005434 218 GLRVCPTSEELW 229 (697)
Q Consensus 218 ~l~~~p~~~~lW 229 (697)
++...|+++.+.
T Consensus 87 al~~~p~~~~~~ 98 (117)
T 3k9i_A 87 IIAETSDDETIQ 98 (117)
T ss_dssp HHHHHCCCHHHH
T ss_pred HHHhCCCcHHHH
Confidence 999999987654
No 146
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.72 E-value=0.0024 Score=67.30 Aligned_cols=194 Identities=10% Similarity=-0.054 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcc---CCCc---HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGK---LSDS---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~---~P~~---~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
..+..+...|++++|...+++|+ .. .|+. ...|..........+ +.+.+.+.|.+|+...+..
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~----------~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMK----------QTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhC
Confidence 35677788999999999999998 43 3443 345555555554444 4788888999999854321
Q ss_pred h-----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHH---HHHHHhCCHHHHHHHHHHHHh-
Q 005434 541 E-----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII---NLVIQKDGIQQAREMYKRFLA- 609 (697)
Q Consensus 541 ~-----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl---~~~~~~~~~~~AR~iy~~~i~- 609 (697)
. ....+......+...+ +.+...|++|+...+.... ...+...|. ......|++++|...|++++.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1222222222233333 5778888888877654321 222222332 224568999999999999998
Q ss_pred ----CC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchH---HHHHHHHHHhcCC---hhhHHH
Q 005434 610 ----LP-RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSL---WRDYYSTETKLGT---SETATA 676 (697)
Q Consensus 610 ----~~-p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~l---W~~y~~fE~~~G~---~~~a~~ 676 (697)
.. |.....+...+.+...+| +.+.|...|++++...+ .++.. +......-...|+ .+.|..
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLG------KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44 444556667777777777 89999999999999865 33322 2233334444566 444444
Q ss_pred HHHH
Q 005434 677 VYWR 680 (697)
Q Consensus 677 vy~r 680 (697)
++++
T Consensus 328 ~~~~ 331 (383)
T 3ulq_A 328 FLES 331 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.70 E-value=0.00038 Score=65.99 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~ 202 (697)
...+...|++++...|.+. .+|...+..+...+ +..+...|++++..+|.++..|...+....
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 133 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM 133 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5677889999999999887 88988888887777 578999999999999999999999999886
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHH
Q 005434 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL 240 (697)
Q Consensus 203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~ 240 (697)
..|+++.|...|++++...|.+..+|.....+....+
T Consensus 134 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 134 -YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred -HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999988887765544
No 148
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=0.00035 Score=63.57 Aligned_cols=90 Identities=9% Similarity=-0.054 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-C----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N----------GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-- 205 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~----------~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~-- 205 (697)
....+...|++++...|++.+.|..+.......+ . +.+...|++||.++|+.+..|...+.... ..
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-Hhcc
Confidence 4567788999999999999999999998766543 2 48899999999999999999998877765 33
Q ss_pred ---------CCHHHHHHHHHHhhhhCCCCHHHH
Q 005434 206 ---------LNVTAARALMQNGLRVCPTSEELW 229 (697)
Q Consensus 206 ---------~~~~~aR~~~~r~l~~~p~~~~lW 229 (697)
|+++.|...|++|+..+|++..-|
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 589999999999999999975333
No 149
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.65 E-value=0.023 Score=61.47 Aligned_cols=334 Identities=10% Similarity=0.003 Sum_probs=168.4
Q ss_pred hhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHH-hhcccCCCCCC
Q 005434 305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR-LKMTDSVSKDG 383 (697)
Q Consensus 305 ~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~-~~l~~~~~~~~ 383 (697)
..++.+.|...|+++.+.- +.+....+-.++..-+.......+...+.++... ++..+..++. +.....
T Consensus 15 ~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~----- 84 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPG----- 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CCTGGGTCC-------------------------------CHHHHHHHHHTC-------
T ss_pred hCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCC-----
Confidence 4456789999999998652 1111111111221111111125666667776655 5566777777 332210
Q ss_pred CCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccC---------CCCC------------chhHh
Q 005434 384 TSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRD---------SELP------------SHVEH 442 (697)
Q Consensus 384 ~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~---------~~~~------------~~~~~ 442 (697)
...++.++|...|+++++.-+..-.+. .................+ .... .....
T Consensus 85 ----~~~~~~~~A~~~~~~Aa~~g~~~A~~~-Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 85 ----ATEAEHHEAESLLKKAFANGEGNTLIP-LAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCSSCHHH-HHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred ----CCCcCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 123678899999999998544322111 111111100000000000 0000 00123
Q ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCC
Q 005434 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (697)
Q Consensus 443 ~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~---~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~ 519 (697)
..+.+..++..+...+|. .+...+.++...| ++++|...+++++ ...|.....|.....+... +. +++
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g~~~a~~~~~Lg~~y~~-g~---~~~- 230 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV-SRGTVTAQRVDSVARVLGD-AT---LGT- 230 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHTC-GG---GSS-
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC-CC---CCC-
Confidence 455566677776655544 7778888888899 8999999999999 5667666655444444422 21 111
Q ss_pred ccchHHHHHHHHHHHhhcChhhhHHHHHHHHHH-H--Hhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHh
Q 005434 520 KADILSIFELLKCILTKVSALESESLWLMALKF-F--MNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK 594 (697)
Q Consensus 520 ~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~-~--~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~ 594 (697)
.+.+++.+.|+++. |.. ...+...... + ...+ +.+...|+++... ...-....+-.+...
T Consensus 231 -~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~ 295 (452)
T 3e4b_A 231 -PDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---------DQPRAELLLGKLYYE 295 (452)
T ss_dssp -CCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHc
Confidence 16789999999997 322 1222222222 2 1122 5677788887742 111122223334445
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHh-
Q 005434 595 D-----GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST-ETK- 667 (697)
Q Consensus 595 ~-----~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f-E~~- 667 (697)
| +.++|...|++++ +.....+.....+... | .+...+.++|..+|+++.... ++........+ +..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G-~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-G-YLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-T-TTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-C-CCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCC
Confidence 5 9999999999999 4444433333323221 1 112348999999999999753 23322233332 222
Q ss_pred --cCChhhHHHHHHHHHhh
Q 005434 668 --LGTSETATAVYWRARKT 684 (697)
Q Consensus 668 --~G~~~~a~~vy~ral~~ 684 (697)
..|...|...|.+|...
T Consensus 369 g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHC
Confidence 34888999999998764
No 150
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00017 Score=61.78 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
+...|++++...|++...|..++......| +..+...|++++...|.++..|...+.... ..|+.+.|+..|++++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999888877 578999999999999999999999999886 789999999999999999
Q ss_pred CCC
Q 005434 222 CPT 224 (697)
Q Consensus 222 ~p~ 224 (697)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 874
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.62 E-value=0.00022 Score=62.11 Aligned_cols=92 Identities=7% Similarity=-0.087 Sum_probs=80.5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCC
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGT 670 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~ 670 (697)
+...|++++|...|++++...|.+...|.....+....+ +.+.|...|++++...|.++..|......-...|+
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999998888888888888 89999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 005434 671 SETATAVYWRARKTLKDS 688 (697)
Q Consensus 671 ~~~a~~vy~ral~~~~~~ 688 (697)
.+.|...|+++++.-|+.
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 999999999999876643
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.61 E-value=0.00062 Score=62.30 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=43.5
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChh
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSE 672 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (697)
..|++++|...|++++...|.+..+|...+.....++ +.+.|...|++++...|.++..|......-...|+.+
T Consensus 23 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG------QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK 96 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Confidence 3445555555555555554444444444444444444 4455555555555554444455555555544555555
Q ss_pred hHHHHHHHHHhhcC
Q 005434 673 TATAVYWRARKTLK 686 (697)
Q Consensus 673 ~a~~vy~ral~~~~ 686 (697)
.|...|.++++..+
T Consensus 97 ~A~~~~~~al~~~p 110 (164)
T 3sz7_A 97 GAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCC
Confidence 55555555554443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.00051 Score=62.77 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMR------------------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW 200 (697)
Q Consensus 140 ~~r~~~iyeral~~------------------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~ 200 (697)
...+...|++++.. .|.+..+|...+....+.| +..+...+++++..+|+++..|...+..
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 106 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA 106 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 56778899999998 7777789988888877777 5789999999999999999999999998
Q ss_pred HHHhcCCHHHHHHHHHHhhhhCCCCH-HHHHHHHHHH
Q 005434 201 EFDHNLNVTAARALMQNGLRVCPTSE-ELWVEYLRME 236 (697)
Q Consensus 201 e~~~~~~~~~aR~~~~r~l~~~p~~~-~lW~~y~~~E 236 (697)
.. ..|+++.|...|++++...|++. .++.....+.
T Consensus 107 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 107 RI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 86 89999999999999999999987 5665555444
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.56 E-value=0.0045 Score=64.75 Aligned_cols=224 Identities=10% Similarity=-0.018 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH----HH--HHHHHHHHHHh
Q 005434 442 HYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV----QL--WLLRISVEIRC 510 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~-----lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~----~l--W~~~i~l~~~~ 510 (697)
+..+.+...+++++...|.... .+...+..+...|++++|...+++++ ...|... .. ......+....
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE-QMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 5578899999999988665422 34555677888999999999999998 4433221 11 12222333333
Q ss_pred cccCCCCCCccchHHHHHHHHHHHhhcCh------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434 511 VTRNSFSPSKADILSIFELLKCILTKVSA------LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS 582 (697)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~------~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~ 582 (697)
| +.+.+.+.|++++...+. ......+......+...+ +.+...+++++....... ...
T Consensus 107 G----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~ 172 (373)
T 1hz4_A 107 G----------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ----PQQ 172 (373)
T ss_dssp T----------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC----GGG
T ss_pred C----------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC----cHH
Confidence 4 478888999999875421 011222222222222223 678888999887654321 111
Q ss_pred hHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCC--CHHHHHH-----HHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 583 LPSAI---INLVIQKDGIQQAREMYKRFLALPRP--GLVLYQN-----CIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 583 l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~~~~~~~-----~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
....| .......|++++|...+++++...+. ....+.. .+.+....| +.+.|+..+++++...+
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG------DKAAAANWLRHTAKPEF 246 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC------CHHHHHHHHHhCCCCCC
Confidence 22222 23345689999999999999875221 1122222 222334566 89999999999987655
Q ss_pred CC----chHHHHHHHHHHhcCChhhHHHHHHHHHhhcC
Q 005434 653 QN----TSLWRDYYSTETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 653 ~~----~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
.. ...+..........|+.+.|..++.+++...+
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 32 13567778888889999999999999987653
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.55 E-value=0.00082 Score=57.86 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTAA 211 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~-------~~lW~~~a~~e~~~~~~~~~a 211 (697)
...+...|++++...|.+..+|...+......| +..+...|++++...|.+ +.+|...+.... ..|+++.|
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A 98 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEEKYKDA 98 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 567788999999999999999999999887777 578999999999998877 889999999886 79999999
Q ss_pred HHHHHHhhhhCCCCHHHHHHHHHHHH
Q 005434 212 RALMQNGLRVCPTSEELWVEYLRMEL 237 (697)
Q Consensus 212 R~~~~r~l~~~p~~~~lW~~y~~~E~ 237 (697)
...|++++...| ++.++.....+..
T Consensus 99 ~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 99 IHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 999999999999 5777776665543
No 156
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.53 E-value=0.0039 Score=65.55 Aligned_cols=234 Identities=14% Similarity=0.078 Sum_probs=140.6
Q ss_pred HHHHhc-CchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHH
Q 005434 167 FCRQRK-NGRMKKVLAQVIRFHPK------VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY 239 (697)
Q Consensus 167 ~~~~~~-~~~~~~~~~ral~~~p~------~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~ 239 (697)
+....| +..+...|++|+...+. ...++...+.... ..|+.+.|...+++|+...+.....-...+......
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334445 57899999999987532 2356666777775 789999999999999998765322111111111111
Q ss_pred HHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhHHHHHHHHH
Q 005434 240 LNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGA 319 (697)
Q Consensus 240 ~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~a 319 (697)
+.. ....++++.|...|++|
T Consensus 189 g~~------------------------------------------------------------y~~~~~~~~A~~~~~~a 208 (378)
T 3q15_A 189 AGN------------------------------------------------------------YDDFKHYDKALPHLEAA 208 (378)
T ss_dssp HHH------------------------------------------------------------HHHTTCHHHHHHHHHHH
T ss_pred HHH------------------------------------------------------------HHHhCCHHHHHHHHHHH
Confidence 100 00011345677777777
Q ss_pred HhcC---CCchH---HHHHHHHHHHHccccCcHHHHHHHHHHHHh-----hCCCChhhHHHHHHhhcccCCCCCCCCcCc
Q 005434 320 VEAL---PSSFN---LRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (697)
Q Consensus 320 l~~~---p~~~~---~~~~~~~~~~~fe~~~~~~~~~~il~~~~~-----~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~ 388 (697)
++.. ++... .+..+-.++... +..+.+...+++++. ..|.....+..+|..+..
T Consensus 209 l~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~------------ 273 (378)
T 3q15_A 209 LELAMDIQNDRFIAISLLNIANSYDRS---GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK------------ 273 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH------------
Confidence 7532 22211 122222222222 235677777888777 666667778888888875
Q ss_pred cchHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHH
Q 005434 389 VPSQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (697)
Q Consensus 389 ~~~~~~~a~~vye~al~~~~~~--~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~ 466 (697)
.++.++|...|++|++..+.. ..+...+......+.... + ...+.++...+++. ...+....++.
T Consensus 274 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~----------~~~~~~al~~~~~~-~~~~~~~~~~~ 340 (378)
T 3q15_A 274 -AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-D----------ERKIHDLLSYFEKK-NLHAYIEACAR 340 (378)
T ss_dssp -TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-C----------HHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-c----------HHHHHHHHHHHHhC-CChhHHHHHHH
Confidence 488999999999999876532 222222233332222111 1 13456677766652 11233456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLC 489 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al 489 (697)
..+..+...|++++|...+++++
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999999999999988
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.50 E-value=0.00021 Score=61.47 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCC
Q 005434 442 HYISHLLTVYEKAEAM---GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~---~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~ 518 (697)
+..+.|...|++++.. +|.++..|...+..+...|++++|...+++++ ...|++..+|..........|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g------- 75 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNHQALRVFYAMVLYNLG------- 75 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT-------
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHcC-------
Confidence 4566789999999998 47778899999999999999999999999999 789999999998888877776
Q ss_pred CccchHHHHHHHHHHHhhcChh
Q 005434 519 SKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 519 ~~~~~~~~~~~f~~al~~~p~~ 540 (697)
+.+++.+.|++++...|..
T Consensus 76 ---~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 76 ---RYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp ---CHHHHHHHHHHHHHHHCCC
T ss_pred ---CHHHHHHHHHHHHHhCCCc
Confidence 3788999999999877654
No 158
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.48 E-value=0.0015 Score=62.09 Aligned_cols=120 Identities=13% Similarity=-0.026 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
.++++.|...|++++. +....|......... .+..+.|...|++++..+|.++..|...+
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg 78 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQD--PHSRICFNIGCMYTI------------------LKNMTEAEKAFTRSINRDKHLAVAYFQRG 78 (213)
T ss_dssp TTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcC--CChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4779999999999963 233333333322221 35688999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSV----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~----------------~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a 533 (697)
..+...|++++|...+++++ ...|.+. ..|..........+ +.+.+.+.|+++
T Consensus 79 ~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a 147 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------EWKKAEEQLALA 147 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH-HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc----------CHHHHHHHHHHH
Confidence 99999999999999999999 6666544 78877777776665 478899999999
Q ss_pred HhhcChh
Q 005434 534 LTKVSAL 540 (697)
Q Consensus 534 l~~~p~~ 540 (697)
+...|..
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9877644
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.47 E-value=0.00096 Score=72.67 Aligned_cols=104 Identities=6% Similarity=0.011 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~ 203 (697)
...+...|++|+...|.+ ..+|...+..+.+.+ +..+...|+++|..+|+++..|...+....
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~- 362 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL- 362 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence 567889999999999998 789988888877777 678999999999999999999999999886
Q ss_pred hcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHH
Q 005434 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLK 244 (697)
Q Consensus 204 ~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~ 244 (697)
..|+++.|+..|+++++..|++..+|.....+....+....
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999988888888877766554433
No 160
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.0017 Score=55.35 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHH
Q 005434 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS 525 (697)
Q Consensus 446 ~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~ 525 (697)
.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..........+ +.+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g----------~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTYSVAWKWLGKTLQGQG----------DRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT----------CHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHcC----------CHHH
Confidence 36778999999999999999999999999999999999999999 789999999988888877766 3788
Q ss_pred HHHHHHHHHhhcCh
Q 005434 526 IFELLKCILTKVSA 539 (697)
Q Consensus 526 ~~~~f~~al~~~p~ 539 (697)
+...|++++...|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999886654
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.45 E-value=0.00053 Score=60.10 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=78.8
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-------hHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-------SLWRDYYS 663 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-------~lW~~y~~ 663 (697)
....|++++|...|+++|...|.....|...+.....++ +.+.|...|++++...|.+. .++.....
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK------KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh------hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 346799999999999999999999998888887777888 89999999999999887332 35666677
Q ss_pred HHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 664 TETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 664 fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
.....|+.+.|...|++|+...+++
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 7888999999999999999987765
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.43 E-value=0.0088 Score=62.84 Aligned_cols=228 Identities=10% Similarity=-0.025 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHcC---CC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhc
Q 005434 442 HYISHLLTVYEKAEAMG---CL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV----QLWLLRISVEIRCV 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~---~~---~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~----~lW~~~i~l~~~~~ 511 (697)
+..+.|...|++|+... +. ...++...+..+...|+++.|...+.+|+ ..++... .+-..+..+-....
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHH
Confidence 55677888888887652 11 24566677777888888888888888888 7766422 12222222222221
Q ss_pred ccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHH
Q 005434 512 TRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPS 585 (697)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~ 585 (697)
. ..+.+.+.+.|++|+...+... ....+......+...+ +.+...|++++....... .+....
T Consensus 194 ~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~ 262 (378)
T 3q15_A 194 D-------FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV----PDLLPK 262 (378)
T ss_dssp H-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----GGGHHH
T ss_pred H-------hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC----ChhHHH
Confidence 1 1257778888888887542211 1122222222222222 567788888887554322 122222
Q ss_pred HH---HHHHHHhCCHHHHHHHHHHHHhCCCC--C---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434 586 AI---INLVIQKDGIQQAREMYKRFLALPRP--G---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSL 657 (697)
Q Consensus 586 ~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l 657 (697)
.+ .......|++++|...|++++...+. + ...+.....+-...+ +...+.++-..|+..- ..+....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~---~~~~~~~al~~~~~~~-~~~~~~~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV---DERKIHDLLSYFEKKN-LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhCC-ChhHHHHH
Confidence 22 22245678888888888888886443 1 112222222222222 0011444444444410 00122356
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 658 WRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 658 W~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
+...+..-...|+.+.|...|.+|+..-
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6777777788899999999999998654
No 163
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.41 E-value=0.009 Score=66.73 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--C
Q 005434 141 ARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--N 207 (697)
Q Consensus 141 ~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~--~ 207 (697)
.++...+++++...|.++.+|..-.......+ .......+++++..+|+++.+|..-.-.. ...+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l-~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccccc
Confidence 57789999999999999999987776665543 34678899999999999999999877665 5778 7
Q ss_pred HHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCC
Q 005434 208 VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENT 287 (697)
Q Consensus 208 ~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 287 (697)
++.+...+++++...|.+...|..-.-.-.. ++.
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-----------l~~----------------------------------- 158 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQ-----------AAV----------------------------------- 158 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------TCC-----------------------------------
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------cCC-----------------------------------
Confidence 7999999999999999998888654322111 110
Q ss_pred CCCCCcchhhhhhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHc-ccc----------CcHHHHHHHHHHH
Q 005434 288 DGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLA----------QSDDMHDKILSDM 356 (697)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~f-e~~----------~~~~~~~~il~~~ 356 (697)
..+.+...++++++..|.+...|.....++... +.. ...+.+-..+.++
T Consensus 159 --------------------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 159 --------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp --------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 112445666777777788777776665555442 110 1124555667888
Q ss_pred HhhCCCChhhHHHHHHhh
Q 005434 357 QRDFLVDPKYWDWLARLK 374 (697)
Q Consensus 357 ~~~~p~~~~~w~~~a~~~ 374 (697)
+...|++...|.++.-..
T Consensus 219 i~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 219 FFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHCSSCSHHHHHHHHHH
T ss_pred HhhCCCCccHHHHHHHHH
Confidence 999999999999876655
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.39 E-value=0.0016 Score=56.38 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=70.2
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC---chHHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN---TSLWRDYYST 664 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~---~~lW~~y~~f 664 (697)
....|++++|...|++++...|.+. ..+...+......+ +.+.|...|++++...|.+ +..+......
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR------NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3457888888888888888777665 45555555555666 7888888888888888866 5667777777
Q ss_pred HHhcCChhhHHHHHHHHHhhcCCc
Q 005434 665 ETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 665 E~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
-...|+.+.|...|+++++..|++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCC
Confidence 778888888888888888887655
No 165
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.38 E-value=0.00096 Score=53.69 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (697)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~ 234 (697)
.+...|..........+ +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|.+...|.....
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34667777777766666 578999999999999999999999999886 7999999999999999999999888877665
Q ss_pred HH
Q 005434 235 ME 236 (697)
Q Consensus 235 ~E 236 (697)
..
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.38 E-value=0.0011 Score=66.69 Aligned_cols=192 Identities=8% Similarity=-0.091 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhccCCC-------------------
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRY-------VTLYLQLGKLDEARKLAAKLCSGKLSD------------------- 495 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y-------~~l~~~~~~~~~A~~l~~~al~~~~P~------------------- 495 (697)
++...|+..|.+++..+|...+.|... ...+...+...++...+.+++ ..-|.
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l-~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV-QISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT-TCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh-cCChhhhhhhhccCCccccccccc
Confidence 446789999999999999999999998 677777766667666677776 43222
Q ss_pred --cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhh
Q 005434 496 --SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVA 572 (697)
Q Consensus 496 --~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~-~~~~~l~~~a~~~~~ 572 (697)
-.+++..|+.++...+. .+.+.++|..++..-|.. . ..|..-+-++.... +.+...|+.+...
T Consensus 99 ~~r~dl~LayA~~L~~~g~----------y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-- 164 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN----------YADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKW-- 164 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC----------HHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGC--
T ss_pred CCHhHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhcc--
Confidence 15788889988887774 788888888776544432 2 34443332222222 3444444433210
Q ss_pred hCCCCCCCCCh----HHHHHH-HHHHhCCHHHHHHHHHHHHhCC--CC-CHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434 573 KDGGGESGFSL----PSAIIN-LVIQKDGIQQAREMYKRFLALP--RP-GLVLYQNCIELENNLASVGDKDSLVNARKLF 644 (697)
Q Consensus 573 ~~~~~~~~~~l----~~~yl~-~~~~~~~~~~AR~iy~~~i~~~--p~-~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly 644 (697)
.... ...|+- .+...|.+++|...|++++..+ |. ....+......-..+| ..+.|+.+|
T Consensus 165 -------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG------r~deA~~~l 231 (282)
T 4f3v_A 165 -------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG------NESAAVALL 231 (282)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT------CHHHHHHHH
T ss_pred -------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC------CHHHHHHHH
Confidence 0111 111222 2556799999999999998655 33 2334555555555677 789999999
Q ss_pred HHHHhhCCCCchHHHHHH
Q 005434 645 ESALATYDQNTSLWRDYY 662 (697)
Q Consensus 645 e~al~~~~~~~~lW~~y~ 662 (697)
++++...|. +.+|....
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999998887 76665443
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.32 E-value=0.0087 Score=60.83 Aligned_cols=181 Identities=14% Similarity=0.043 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhcccCCCCCCccchH
Q 005434 447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS--DSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (697)
Q Consensus 447 ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P--~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~ 524 (697)
+...+++.+...+.++......+..+...|++++|.+++.+++ ...| .+.+.....+++.+..+. .+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r----------~d 153 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNN----------VS 153 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTC----------HH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCC----------HH
Confidence 3455566555544555556677888888999999999999998 6776 789999999999988774 78
Q ss_pred HHHHHHHHHHhhcCh----hhhH--HHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCCC--hHHHHHHHHHHh
Q 005434 525 SIFELLKCILTKVSA----LESE--SLWLMALKFFMNQ--KHYFDKLVEIALISVAKDGGGESGFS--LPSAIINLVIQK 594 (697)
Q Consensus 525 ~~~~~f~~al~~~p~----~~~~--~lW~~y~~~~~~~--~~~~~~l~~~a~~~~~~~~~~~~~~~--l~~~yl~~~~~~ 594 (697)
.+++.+++..+.-|. .++. .+-..|+.+.... ...+-.+|+.+...+ +. -....+.-..+.
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---------p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---------PTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------CCcccHHHHHHHHHHc
Confidence 888888887554441 1221 1212233333221 123445555543221 11 001111123345
Q ss_pred CCHHHHHHHHHHHHhCC----------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 595 DGIQQAREMYKRFLALP----------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 595 ~~~~~AR~iy~~~i~~~----------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
|++++|..+++.+++.. |.+.......|-+-..+| + .+..+++++.+..|.++
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg------k--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG------L--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT------C--TTHHHHHHHHHTTCCCH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC------h--HHHHHHHHHHHhCCCCh
Confidence 66666666666555432 334445556666666555 3 55566666666655544
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.30 E-value=0.0015 Score=69.04 Aligned_cols=101 Identities=8% Similarity=-0.030 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVM----------------RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202 (697)
Q Consensus 140 ~~r~~~iyeral~----------------~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~ 202 (697)
...+...|++|+. ..|.+..+|..++..+.+.+ +..+...|++++..+|.++.+|...+....
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 318 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4567788999998 67778899999998888777 578999999999999999999999999886
Q ss_pred HhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHHHHHHH
Q 005434 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLN 241 (697)
Q Consensus 203 ~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E~~~~~ 241 (697)
..|+.+.|...|+++++..|++..+|..+..+....+.
T Consensus 319 -~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 319 -GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp -HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred -HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999888877665443
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.28 E-value=0.0019 Score=56.43 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-------GVWIYAAAWEFDHNLNVTAA 211 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~-------~lW~~~a~~e~~~~~~~~~a 211 (697)
...+...|++|+...|++...|..........| +..+...|++++.+.|.++ .+|...+.... ..|+++.|
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A 102 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDLSLA 102 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCHHHH
Confidence 567889999999999999999999988888777 6789999999999988754 35555566663 78999999
Q ss_pred HHHHHHhhhhCCCCHHH
Q 005434 212 RALMQNGLRVCPTSEEL 228 (697)
Q Consensus 212 R~~~~r~l~~~p~~~~l 228 (697)
...|+++|..+|+ +++
T Consensus 103 ~~~~~kal~~~~~-~~~ 118 (127)
T 4gcn_A 103 VQWFHRSLSEFRD-PEL 118 (127)
T ss_dssp HHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHhhCcC-HHH
Confidence 9999999999986 444
No 170
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.26 E-value=0.01 Score=60.55 Aligned_cols=193 Identities=9% Similarity=-0.037 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHHcCC--------Cc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---c---HHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGC--------LT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---S---VQLWLLRI 504 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~--------~~---~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~---~---~~lW~~~i 504 (697)
+..+.+..++++|....+ .. ...+...+..+...|++++|...+.+++ ...+. . ...+....
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 455566666666655321 11 1344555677888899999999999988 44332 1 23444444
Q ss_pred HHHHHhcccCCCCCCccchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCC
Q 005434 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGE 578 (697)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~----~~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~ 578 (697)
.+....+ +.+++.+.|++|+...+. ......+......+.. + +.+...|++|+...+......
T Consensus 84 ~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 84 MMLKDLQ----------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHTT----------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 4444444 367788889999875421 1123344444444444 4 567788999988765432100
Q ss_pred CCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 579 ~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
............+...|++++|...|++++...|.. ...+...+.....++ +.+.|...|++++ ..|
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA------DYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHh-CCC
Confidence 001112223444567899999999999999864432 124445555555567 8999999999999 877
Q ss_pred C
Q 005434 653 Q 653 (697)
Q Consensus 653 ~ 653 (697)
.
T Consensus 226 ~ 226 (307)
T 2ifu_A 226 G 226 (307)
T ss_dssp T
T ss_pred C
Confidence 3
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00035 Score=72.89 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHHhhcCCchhHH---------------HHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIF---------------DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw---------------~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~a 454 (697)
.++++.|...|++|+...|....+ ..|..+-.-.. ..+..+.|...|++|
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~---------------~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI---------------KLKRYDEAIGHCNIV 256 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH---------------TTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHH
Confidence 477899999999999988764311 01211111111 124578899999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 455 l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+..+|.+...|...+..+...|++++|...+++++ ...|++..+|.....+...... ..+..+..|.+++
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~~~~~---------~~~~a~~~~~~~l 326 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAEQEKA---------LYQKQKEMYKGIF 326 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C-------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 7889988888765554332221 2345566788877
Q ss_pred hhcC
Q 005434 535 TKVS 538 (697)
Q Consensus 535 ~~~p 538 (697)
...|
T Consensus 327 ~~~p 330 (338)
T 2if4_A 327 KGKD 330 (338)
T ss_dssp ----
T ss_pred CCCC
Confidence 6554
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.25 E-value=0.0011 Score=72.03 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=89.6
Q ss_pred CCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-------------HHHHHHHHHHHHhcC
Q 005434 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAP 426 (697)
Q Consensus 360 ~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-------------lw~~yi~~~~~~~~~ 426 (697)
.|+....|...+..+.. .++++.|...|++|++..|... ....|...-.-.+
T Consensus 264 ~~~~a~~~~~~G~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-- 328 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFK-------------GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-- 328 (457)
T ss_dssp HHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34445567677776654 4789999999999999877641 0122222211111
Q ss_pred CcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 005434 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (697)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (697)
..+..+.|...|++|+..+|.+...|...+..+...|++++|...+++|+ ...|++...|.....+
T Consensus 329 -------------~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 329 -------------KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQISMC 394 (457)
T ss_dssp -------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----CHHHHHHHH
T ss_pred -------------HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence 13568899999999999999999999999999999999999999999999 8899988888777766
Q ss_pred HHHhc
Q 005434 507 EIRCV 511 (697)
Q Consensus 507 ~~~~~ 511 (697)
....+
T Consensus 395 ~~~~~ 399 (457)
T 1kt0_A 395 QKKAK 399 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 173
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.23 E-value=0.0016 Score=69.35 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~ 469 (697)
.|+++.|+..++.+.+..+.+.+....+....+ .+.+.++...|+ .| +...|..-+
T Consensus 74 ~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K------------------lg~l~e~e~f~~-----~p-n~~a~~~IG 129 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARESYVETELIFALAK------------------TNRLAELEEFIN-----GP-NNAHIQQVG 129 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-----CC----------
T ss_pred CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH------------------hCCHHHHHHHHc-----CC-cHHHHHHHH
Confidence 477888888888888765443222221111111 112233333222 23 234666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA 549 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~y 549 (697)
+.+-..|.+++|+..|.++ ..|...+..+.+.| +.+.+.+.|++|. ....|...
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg----------~yq~AVea~~KA~-------~~~~Wk~v 183 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG----------EYQAAVDGARKAN-------STRTWKEV 183 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTT----------CHHHHHHHHHHHT-------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc----------cHHHHHHHHHHcC-------CchhHHHH
Confidence 7777777777777777654 25666666666655 3666767777761 24567665
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccC
Q 005434 550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA 629 (697)
Q Consensus 550 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~ 629 (697)
+.-....++ |+.|.. |..... ..+.-....+.++.+.|.+++|..++++++...+....+|....-+..+..
T Consensus 184 ~~aCv~~~e-----f~lA~~-~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 184 CFACVDGKE-----FRLAQM-CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHTTC-----HHHHHH-TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCc-----HHHHHH-HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence 543333331 222221 111110 011112234556678899999999999999998888888888888877664
Q ss_pred CCCCcccHHHHHHHHHHHHhhCC-----CCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 005434 630 SVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKLGTSETATAVYWRA 681 (697)
Q Consensus 630 ~~~~~~~~~raR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~~a~~vy~ra 681 (697)
. +.+...-++|...+...+ ....+|..+.-+-..+|+.++|...+-..
T Consensus 256 p----~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 256 P----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp H----HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred H----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 1 144444455655555444 45689999999999999999887755433
No 174
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.01 Score=55.63 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhhh----H----HHH-HHHHHHHHhhhhCCCCCCCCChHHHHHHH
Q 005434 522 DILSIFELLKCILTK--VSALESESLWLMALKFFMNQK----H----YFD-KLVEIALISVAKDGGGESGFSLPSAIINL 590 (697)
Q Consensus 522 ~~~~~~~~f~~al~~--~p~~~~~~lW~~y~~~~~~~~----~----~~~-~l~~~a~~~~~~~~~~~~~~~l~~~yl~~ 590 (697)
.+...+..|++.|.. -...+-+.+|..|+.+.+..- . .+- .++++++..+.....-.+.+..-..|+.+
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 467778889999987 334445789999999876541 1 233 78888888764332111122222223333
Q ss_pred HHH--hCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC-CCchHHHHHHHHH
Q 005434 591 VIQ--KDGIQQAREMYKRFLALP--RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTE 665 (697)
Q Consensus 591 ~~~--~~~~~~AR~iy~~~i~~~--p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~-~~~~lW~~y~~fE 665 (697)
+.. .++...++.+|.-+.... -....+|..|+.+....+ +..+|.++|+.+++... ....|-..|.+|+
T Consensus 87 a~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ------FFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 222 334556666766665421 122346677776666666 66777777777776544 2235666667776
Q ss_pred Hh
Q 005434 666 TK 667 (697)
Q Consensus 666 ~~ 667 (697)
.+
T Consensus 161 ~R 162 (202)
T 3esl_A 161 DR 162 (202)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.00045 Score=57.65 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=63.1
Q ss_pred hcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 005434 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (697)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~ 224 (697)
..|++...|...+......| +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++++..|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhc
Confidence 46999999999999888877 578999999999999999999999999885 899999999999999998775
No 176
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.21 E-value=0.007 Score=54.19 Aligned_cols=124 Identities=11% Similarity=0.132 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHH
Q 005434 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (697)
Q Consensus 523 ~~~~~~~f~~al~~~p~~~~~~lW~~y~~~~~~~~----~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~ 598 (697)
...++..|+..|......+-+.+|..|+.+.+.+- ..+..++++++..+..... .
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~----Y----------------- 64 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKK----Y----------------- 64 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGG----G-----------------
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhccccc----c-----------------
Confidence 35577779999887766666888999998876531 2345566666655432110 0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHH
Q 005434 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATA 676 (697)
Q Consensus 599 ~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~ 676 (697)
...|--+.+|+.||++ .. ..+++|..+..... ....+|..|+.+.+..|+.+.|..
T Consensus 65 ----------knD~RyLklWl~ya~~---~~---------dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 122 (152)
T 4a1g_A 65 ----------HNDPRFISYCLKFAEY---NS---------DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASA 122 (152)
T ss_dssp ----------TTCHHHHHHHHHHHTT---BS---------CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------cCCHHHHHHHHHHHHh---cC---------CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0001113577777744 11 26778887776543 445888888888888888888888
Q ss_pred HHHHHHhhcCCcc
Q 005434 677 VYWRARKTLKDST 689 (697)
Q Consensus 677 vy~ral~~~~~~~ 689 (697)
||.+|++.-..|.
T Consensus 123 Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 123 VLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 8888888776664
No 177
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.19 E-value=0.0024 Score=65.22 Aligned_cols=190 Identities=10% Similarity=-0.011 Sum_probs=117.0
Q ss_pred cCCHHHHHHHHHHHhhccCCC-----------cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh---
Q 005434 475 LGKLDEARKLAAKLCSGKLSD-----------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL--- 540 (697)
Q Consensus 475 ~~~~~~A~~l~~~al~~~~P~-----------~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~--- 540 (697)
.|++++|.+++++|. ...|. ....+.....+....+ +.+.+.+.|.+++...+..
T Consensus 4 ~~~~~eA~~~~~~a~-k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~ 72 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE-KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAK----------QLEQAKDAYLQEAEAHANNRSL 72 (307)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHH-HHccccccCCCCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHcCCH
Confidence 456677777777665 22221 1223333333333333 4677888888888754321
Q ss_pred -hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHH---HHHhCCHHHHHHHHHHHHhCCCCC
Q 005434 541 -ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPG 614 (697)
Q Consensus 541 -~~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~---~~~~~~~~~AR~iy~~~i~~~p~~ 614 (697)
.....+......+...+ +.+...|++|+........ .......|... ... |++++|...|++++...|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 12233333333333322 4567778888876533211 11122233222 334 99999999999999875532
Q ss_pred ------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005434 615 ------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTETKLGTSETATAVYWRAR 682 (697)
Q Consensus 615 ------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~------~lW~~y~~fE~~~G~~~~a~~vy~ral 682 (697)
...+...+.+...++ +.+.|...|++++...+.+. ..|...+......|+.+.|...|++++
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQ------KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 346667777777788 89999999999999876322 356656666666799999999999999
Q ss_pred hhcC
Q 005434 683 KTLK 686 (697)
Q Consensus 683 ~~~~ 686 (697)
..|
T Consensus 223 -~~p 225 (307)
T 2ifu_A 223 -SIP 225 (307)
T ss_dssp -TST
T ss_pred -CCC
Confidence 554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.18 E-value=0.0025 Score=69.75 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
...+...|++|+...|++...|...+....+.+ +..+...|++++..+|.++..|...+.... ..|+.+.|...|+++
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETV 100 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 567889999999999999999999999888877 578999999999999999999999999886 799999999999999
Q ss_pred hhhCCCCHHHHHHHHHH
Q 005434 219 LRVCPTSEELWVEYLRM 235 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~ 235 (697)
++..|++...|..+...
T Consensus 101 l~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 101 VKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHSTTCTTHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 99999988888777655
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.17 E-value=0.001 Score=69.34 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDI-----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWE 201 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~-----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e 201 (697)
...+...|++|+...|++. .+|..++..+.+.+ +..+...|+++|..+|+++.+|...+...
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~ 274 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK 274 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567889999999999876 48888888777766 67899999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHHHH
Q 005434 202 FDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (697)
Q Consensus 202 ~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~~E 236 (697)
. ..|+++.|+..|+++++..|++..+|..+..+.
T Consensus 275 ~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 275 A-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp H-TTTCHHHHHHHHHHTTC----------------
T ss_pred H-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6 899999999999999999999888888777663
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.0024 Score=64.09 Aligned_cols=143 Identities=10% Similarity=-0.114 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcC
Q 005434 328 NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV 407 (697)
Q Consensus 328 ~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~ 407 (697)
+++..|...+..-+ ..+.+..+++.+....|++. ..+.++...+. .++++.|...|+.++...
T Consensus 103 dl~LayA~~L~~~g---~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-------------~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 103 AITMGFAACEAAQG---NYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-------------AERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHHHHHHHT---CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-------------TTCHHHHHHHHTTGGGCS
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-------------cCCHHHHHHHHHHhhccC
Confidence 34455544444332 35677777777777777666 66666666654 478999999998775533
Q ss_pred CchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhcCCHHHHHHH
Q 005434 408 PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG--CL-TEDIAHRYVTLYLQLGKLDEARKL 484 (697)
Q Consensus 408 ~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~--~~-~~~lw~~y~~l~~~~~~~~~A~~l 484 (697)
+. ....-+.+....... ..+..+.|...|++++... |. ..+.++..+..+...|+.++|+.+
T Consensus 166 d~--~~~~~a~~~LG~al~-------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 166 DK--FLAGAAGVAHGVAAA-------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp CH--HHHHHHHHHHHHHHH-------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Cc--ccHHHHHHHHHHHHH-------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21 111112222221110 1356789999999998653 55 667999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHH
Q 005434 485 AAKLCSGKLSDSVQLWLLRI 504 (697)
Q Consensus 485 ~~~al~~~~P~~~~lW~~~i 504 (697)
+++++ ...|. ...|....
T Consensus 231 l~~a~-a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 231 LEWLQ-TTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHH-HHSCC-HHHHHHHH
T ss_pred HHHHH-hcCCc-HHHHHHHh
Confidence 99999 78898 88776543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.17 E-value=0.0024 Score=54.84 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCC-------chHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN-------TSLWRDYYS 663 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~-------~~lW~~y~~ 663 (697)
....|++++|...|++++...|.....+...+.+....+ +.+.|...|++++...+.+ +.+|...+.
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc------cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 345778888888888888888777777777777766677 7888888888888877643 567777777
Q ss_pred HHHhcCChhhHHHHHHHHHhhcCC
Q 005434 664 TETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 664 fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
.-...|+.+.|...|.+++...++
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC
Confidence 777788888888888888876654
No 182
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.15 E-value=0.0055 Score=57.76 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSM-----------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~-----------------lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye 452 (697)
.++++.|...|++++...|... +|........ ..+..+.|...|+
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------------~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN------------------KNKDYPKAIDHAS 112 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------------------HhcCHHHHHHHHH
Confidence 4779999999999998766432 2221111111 1355789999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (697)
Q Consensus 453 ~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (697)
+++..+|.++..|...+..+...|++++|...+++++ ...|.+..+|.....+....
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 78899988887766655544
No 183
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.14 E-value=0.0067 Score=57.54 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=83.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-----------
Q 005434 587 IINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----------- 655 (697)
Q Consensus 587 yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~----------- 655 (697)
........|++++|...|++++...|.....+...+.+....+ +.+.|...|++++...|.+.
T Consensus 43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE------KYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc------cHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 3444567899999999999999999988888888888888888 89999999999999888655
Q ss_pred -----hHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 656 -----SLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 656 -----~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
.+|......-...|+.+.|...+++|++..++.
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888999999999999999887644
No 184
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.11 E-value=0.0025 Score=52.53 Aligned_cols=77 Identities=12% Similarity=-0.062 Sum_probs=66.6
Q ss_pred cCCCHHHHHHHHHHHHHh-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434 154 FKGDIELWFKYMEFCRQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (697)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~-~---~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW 229 (697)
.|.+.++|..|++...-. + ...+..+|+++|..+|+++..++..+...+ ..|++..|...+++.+...|. ..|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~--~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP--NLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence 589999999999987543 3 358999999999999999999999999997 799999999999999999997 455
Q ss_pred HHHH
Q 005434 230 VEYL 233 (697)
Q Consensus 230 ~~y~ 233 (697)
..-+
T Consensus 79 ~~~i 82 (93)
T 3bee_A 79 RVTI 82 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.027 Score=62.90 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHh
Q 005434 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (697)
Q Consensus 346 ~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-lw~~yi~~~~~~~ 424 (697)
.+.+-..++.++...|++...|...+......... .........++.+...|+++++..|... .|..= .+....+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~---~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR-~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETE---KSPEESAALVKAELGFLESCLRVNPKSYGTWHHR-CWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccc---cchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc
Confidence 46677888999999999999998876655321000 0000111238899999999999888764 66532 2323222
Q ss_pred cCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCcHHHHHHH
Q 005434 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLR 503 (697)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (697)
. ....+++...++++++.+|.+...|..-.-.+...| ..+++.+.+.+++ ..+|.+...|..+
T Consensus 121 ~---------------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r 184 (567)
T 1dce_A 121 P---------------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYR 184 (567)
T ss_dssp S---------------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHH
T ss_pred c---------------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHH
Confidence 1 013578999999999999999999988777778888 8999999999999 8999999999988
Q ss_pred HHHHHHhcccCCC----CCCccchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005434 504 ISVEIRCVTRNSF----SPSKADILSIFELLKCILTKVSALESESLWLM 548 (697)
Q Consensus 504 i~l~~~~~~~~~~----~~~~~~~~~~~~~f~~al~~~p~~~~~~lW~~ 548 (697)
..+.......... ......+++..+.+.+|+..-|... ..|..
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y 231 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFY 231 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHH
Confidence 8777664221000 0011246778888999998777654 56863
No 186
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.02 E-value=0.024 Score=56.54 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHh-cCCh
Q 005434 596 GIQQAREMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETK-LGTS 671 (697)
Q Consensus 596 ~~~~AR~iy~~~i~~~p~--~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~-~~~lW~~y~~fE~~-~G~~ 671 (697)
....|+...++++++.|. ....|..+.-+...+. +--.++.++|+.+|++|+..+|. +.+....|.+|-.. .|+.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP-p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP-ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC-TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC-CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 467889999999998887 4447777777776652 10112889999999999999994 58999999999988 4999
Q ss_pred hhHHHHHHHHHhhcCC
Q 005434 672 ETATAVYWRARKTLKD 687 (697)
Q Consensus 672 ~~a~~vy~ral~~~~~ 687 (697)
+.+...+++|++.-+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999987665
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.02 E-value=0.0047 Score=56.06 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL----------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~----------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
+..+.|+..|++|+..+|.+++.|..|...+...+++ ++|...+++|+ ...|+..+.|...-......+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHhc
Confidence 5578899999999999999999999999999888764 59999999999 899999998877666665443
Q ss_pred ccCCCCCCc----cchHHHHHHHHHHHhhcCh
Q 005434 512 TRNSFSPSK----ADILSIFELLKCILTKVSA 539 (697)
Q Consensus 512 ~~~~~~~~~----~~~~~~~~~f~~al~~~p~ 539 (697)
.. +|+. .+++++.+.|++|+..-|.
T Consensus 95 ~l---~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 95 FL---TPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HH---CCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cc---CcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 11 1210 2578888899999987664
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.96 E-value=0.07 Score=56.84 Aligned_cols=236 Identities=10% Similarity=0.029 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~ 218 (697)
..++...++++ +...+|...+.-..+.+ ...+.+.|.++ .++..|...+.-. +..|+++.|..+++.+
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~a-e~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Confidence 66777777777 33469998888777766 56788888764 3566777777766 4789999999999998
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHhhhhhccccCCCCCCCCCCCCCCCCcchhhh
Q 005434 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (697)
Q Consensus 219 l~~~p~~~~lW~~y~~~E~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (697)
.+..|+ +.+....+..-.+.+...+ +.. ++. .
T Consensus 88 rk~~~~-~~i~~~Li~~Y~Klg~l~e----~e~-------------------------f~~---~--------------- 119 (449)
T 1b89_A 88 RKKARE-SYVETELIFALAKTNRLAE----LEE-------------------------FIN---G--------------- 119 (449)
T ss_dssp ----------------------CHHH----HTT-------------------------TTT---C---------------
T ss_pred HHhCcc-chhHHHHHHHHHHhCCHHH----HHH-------------------------HHc---C---------------
Confidence 886554 3333333222211111000 000 000 0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccC
Q 005434 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (697)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~ 378 (697)
|+ ...|...-+.+..- +..+.+...+.++ ..|..+|.....
T Consensus 120 -------------------------pn-~~a~~~IGd~~~~~---g~yeeA~~~Y~~a--------~n~~~LA~~L~~-- 160 (449)
T 1b89_A 120 -------------------------PN-NAHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVH-- 160 (449)
T ss_dssp -------------------------C--------------------CTTTHHHHHHHT--------TCHHHHHHHHHT--
T ss_pred -------------------------Cc-HHHHHHHHHHHHHc---CCHHHHHHHHHHh--------hhHHHHHHHHHH--
Confidence 00 00111111111110 1223344444433 356677776654
Q ss_pred CCCCCCCcCccchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcC
Q 005434 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458 (697)
Q Consensus 379 ~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~ 458 (697)
.++++.|.+.|+++ ...+.|...+..|... +..+.|...... +.
T Consensus 161 -----------Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~------------------~ef~lA~~~~l~-L~-- 204 (449)
T 1b89_A 161 -----------LGEYQAAVDGARKA----NSTRTWKEVCFACVDG------------------KEFRLAQMCGLH-IV-- 204 (449)
T ss_dssp -----------TTCHHHHHHHHHHH----TCHHHHHHHHHHHHHT------------------TCHHHHHHTTTT-TT--
T ss_pred -----------hccHHHHHHHHHHc----CCchhHHHHHHHHHHc------------------CcHHHHHHHHHH-HH--
Confidence 47799999999999 3456788877666542 224444332222 21
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 459 ~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
..++--...+.++.+.|.+++|..++++++ +.-|....+|....-+..+..
T Consensus 205 -~~ad~l~~lv~~Yek~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 205 -VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTTC
T ss_pred -hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhcC
Confidence 234444467788999999999999999999 666888999998877776653
No 189
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.94 E-value=0.054 Score=51.67 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHH
Q 005434 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS 525 (697)
Q Consensus 446 ~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~ 525 (697)
.+...|+++.+. .++..+...+.++...+++++|...+++++. +.+...+.....+... + +++ .+.++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~----g~~--~~~~~ 71 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-N----PQQ--ADYPQ 71 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-S----TTS--CCHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-C----CCC--CCHHH
Confidence 356778888875 5788888899999999999999999999984 2445555544444433 2 111 15788
Q ss_pred HHHHHHHHHhh
Q 005434 526 IFELLKCILTK 536 (697)
Q Consensus 526 ~~~~f~~al~~ 536 (697)
+.+.|++|+..
T Consensus 72 A~~~~~~A~~~ 82 (212)
T 3rjv_A 72 ARQLAEKAVEA 82 (212)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88889998653
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0064 Score=50.69 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 005434 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (697)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~ 225 (697)
+...|..........| +..+...|++++...|.++.+|...+.... ..|+.+.|...|++++...|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence 3556777777766666 578999999999999999999999999886 7999999999999999999986
No 191
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.88 E-value=0.042 Score=55.80 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred HhHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC------CcHHHH--HHHHHHHHHh
Q 005434 441 EHYISHLLTVYEKAEAMGC--LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS------DSVQLW--LLRISVEIRC 510 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~--~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P------~~~~lW--~~~i~l~~~~ 510 (697)
.+..+.|..++.+++..+| .+.+.....++++++.|+++.|+++++++. ...| ++..+. ..|+.+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~~~d~~~~~d~~l~~Laea~v~l~~g- 190 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NAIEDTVSGDNEMILNLAESYIKFATN- 190 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCccccccchHHHHHHHHHHHHHHhC-
Confidence 3668999999999999887 788999999999999999999999999987 6677 232222 223333322
Q ss_pred cccCCCCCCccchHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCC----CCCCCChHH
Q 005434 511 VTRNSFSPSKADILSIFELLKCILTKVSA-LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGG----GESGFSLPS 585 (697)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~f~~al~~~p~-~~~~~lW~~y~~~~~~~~~~~~~l~~~a~~~~~~~~~----~~~~~~l~~ 585 (697)
+. +...+..+|++.....|. ....-+|..++ -..+-+.++.+++..+..-+.-.. .+..+....
T Consensus 191 ~~---------~~q~A~~~f~El~~~~p~~~~~~lLln~~~--~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 191 KE---------TATSNFYYYEELSQTFPTWKTQLGLLNLHL--QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp CS---------TTTHHHHHHHHHHTTSCSHHHHHHHHHHHH--HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred Cc---------cHHHHHHHHHHHHHhCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 11 367889999998877764 12234554221 122225677777754432111000 001122221
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 586 AIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 586 ~yl~~~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
.-+.+....|+ .|..+++++....|..+-+ . +....-+.|++++..+.
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i-~----------------d~~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI-K----------------HHQEIDAKFDELVRKYD 307 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH-H----------------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH-H----------------HHHHHHHHHHHHHHHhc
Confidence 22334445676 9999999999998876543 1 33444556777776654
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.88 E-value=0.0033 Score=57.15 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=47.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLWRDYYSTE 665 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~-~lW~~y~~fE 665 (697)
....|+++.|...|++++...|.....+...+.....++ +.+.|...|++++...|.++ .++.......
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAW------KLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445677777777777777777777776666666666666 77777777777777777665 5554444443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.86 E-value=0.0051 Score=55.97 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcc-------CCCcHHHH-
Q 005434 441 EHYISHLLTVYEKAEAMGCL-------TED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGK-------LSDSVQLW- 500 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~-------~~~-----lw~~y~~l~~~~~~~~~A~~l~~~al~~~-------~P~~~~lW- 500 (697)
.+..+.|...|++|+..+|. +.. .|..-+..+...|++++|...+++|+ .. .|+....|
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCchHHHHH
Confidence 35688999999999999888 433 99999999999999999999999999 78 99999999
Q ss_pred ---HHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 501 ---LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 501 ---~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
......+...+ +.+++.+.|++|+...|..
T Consensus 103 ~~~~~rG~aL~~lg----------r~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 103 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence 87777776666 4788999999999876643
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.85 E-value=0.0051 Score=64.86 Aligned_cols=105 Identities=12% Similarity=0.020 Sum_probs=78.9
Q ss_pred chHHHHHHHHHHHHhhcCCch--------------hHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSS--------------MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~--------------~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al 455 (697)
.++++.|...|++|++..+.. .....|...-.-.+ ..+..+.|...|++|+
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL---------------KMSDWQGAVDSCLEAL 300 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH---------------hccCHHHHHHHHHHHH
Confidence 477999999999999843221 01112222111111 1355789999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 005434 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (697)
Q Consensus 456 ~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (697)
..+|.++..|...+..+...|++++|...+++|+ ...|++..+|.....+....
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 78999988887766555443
No 195
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.81 E-value=0.0061 Score=58.11 Aligned_cols=98 Identities=10% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHh---CC--HHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434 580 GFSLPSAIINLVIQK---DG--IQQAREMYKRFLALPRPG---------LVLYQNCIELENNLASVGDKDSLVNARKLFE 645 (697)
Q Consensus 580 ~~~l~~~yl~~~~~~---~~--~~~AR~iy~~~i~~~p~~---------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye 645 (697)
...+|..|+.|...+ |+ -..-..++++|+..+-.. +.+|+.||++ . +..+.+|.
T Consensus 71 PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---------~~p~~if~ 138 (223)
T 4aez_C 71 PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---------DEPVELFS 138 (223)
T ss_dssp THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---------SCHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---------CCHHHHHH
Confidence 344555566665543 11 112345677776643322 4578888854 1 25667888
Q ss_pred HHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCcc
Q 005434 646 SALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDST 689 (697)
Q Consensus 646 ~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~~ 689 (697)
.+..... ....+|..|+.+-+..|+.+.|..||.+|++.-..|.
T Consensus 139 ~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 139 FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 8887644 4568999999988888999999999999988876664
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.039 Score=58.61 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=124.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcH-----------------HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSV-----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----------------~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~ 531 (697)
++-+...|++++|.+.+.+++ ...|... ........+....| +.+++.+.|.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------AKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------CHHHHHHHHH
Confidence 444566788999999998888 4444321 11222333343444 4678888888
Q ss_pred HHHhhcCh---hhhHHHHHHHHHHHHh-hh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHH
Q 005434 532 CILTKVSA---LESESLWLMALKFFMN-QK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYK 605 (697)
Q Consensus 532 ~al~~~p~---~~~~~lW~~y~~~~~~-~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~ 605 (697)
+++...+. .....+-...+..+.. .+ +.+..+++.++..............+...........|.+++|.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 88764322 1111111112222221 11 466777888877655443211111222233455667899999999999
Q ss_pred HHHhCCCC------CHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCc-----hHHHHHHHHHHhcCChh
Q 005434 606 RFLALPRP------GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNT-----SLWRDYYSTETKLGTSE 672 (697)
Q Consensus 606 ~~i~~~p~------~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~-----~lW~~y~~fE~~~G~~~ 672 (697)
+++..... ...++..-+.+...++ +.++|+.+|++++...+ .++ .++..........|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~ 233 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLR------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHH
Confidence 99864221 1346666667777777 99999999999998755 222 45566666667789999
Q ss_pred hHHHHHHHHHhhcC
Q 005434 673 TATAVYWRARKTLK 686 (697)
Q Consensus 673 ~a~~vy~ral~~~~ 686 (697)
.|...|..+...++
T Consensus 234 ~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 234 TAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987763
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.72 E-value=0.011 Score=49.01 Aligned_cols=71 Identities=10% Similarity=-0.129 Sum_probs=60.5
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 457 ~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
.+|.++..|...+..+...|++++|...+++++ ...|++...|..........+ +.+++.+.|++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV-ETDPDYVGTYYHLGKLYERLD----------RTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999 789999999998888877766 478888999999876
Q ss_pred cC
Q 005434 537 VS 538 (697)
Q Consensus 537 ~p 538 (697)
.|
T Consensus 71 ~~ 72 (100)
T 3ma5_A 71 AR 72 (100)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.67 E-value=0.0058 Score=55.58 Aligned_cols=93 Identities=9% Similarity=-0.085 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHhc-CchHHHHHHHHHHh-------CCCCHHHH----H
Q 005434 140 VARILEIYRLAVMRFKG-------DIE-----LWFKYMEFCRQRK-NGRMKKVLAQVIRF-------HPKVPGVW----I 195 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~-------~~~-----lW~~y~~~~~~~~-~~~~~~~~~ral~~-------~p~~~~lW----~ 195 (697)
...+...|++|++..|+ +.. +|..-.....+.| +..+...|+++|.+ +|+++..| .
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~ 106 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY 106 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHH
Confidence 56788999999999999 665 8888888777777 67899999999999 99999999 7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHH
Q 005434 196 YAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (697)
Q Consensus 196 ~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~ 233 (697)
.-+.-. ...|+.+.|...|++++...|+...+.....
T Consensus 107 ~rG~aL-~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 107 SRALAL-DGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred hHHHHH-HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 777766 4799999999999999999997654444443
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.0096 Score=59.35 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-----c-CchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC
Q 005434 136 DFSGVARILEIYRLAVMRFKG--DIELWFKYMEFCRQR-----K-NGRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNL 206 (697)
Q Consensus 136 ~~~~~~r~~~iyeral~~~p~--~~~lW~~y~~~~~~~-----~-~~~~~~~~~ral~~~p~~-~~lW~~~a~~e~~~~~ 206 (697)
.-+....+..+.+|++...|+ +...|..+..+..+. | .++++..|+|||.++|+. ...++.|+.+.....+
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345678899999999999999 677999999998873 4 468999999999999974 9999999999864469
Q ss_pred CHHHHHHHHHHhhhhCCCC---HHHHHHHHHHHH
Q 005434 207 NVTAARALMQNGLRVCPTS---EELWVEYLRMEL 237 (697)
Q Consensus 207 ~~~~aR~~~~r~l~~~p~~---~~lW~~y~~~E~ 237 (697)
+.+.|+..+++++...|.. ..++....+=+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA 288 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILSQKRA 288 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHH
Confidence 9999999999999998863 356666554443
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.63 E-value=0.19 Score=55.01 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh-cChhh
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALE 541 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~-~p~~~ 541 (697)
.++..-++...+.|++++|.+++++.....++.+...|...|......+....... ..+++.+.++|++.... +.|.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd- 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPN- 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCC-
Confidence 34555677788899999999999998865677778888887776544332111111 12478888899987763 3333
Q ss_pred hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHH
Q 005434 542 SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLY 618 (697)
Q Consensus 542 ~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~ 618 (697)
...|...+.-+...+ +.+..+|+.+... +..+....+...+.-+.+.|.+++|.++|+..... ..|+...|
T Consensus 105 -~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 105 -EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 345665565554444 6788888887642 11112333555666677889999999999999875 45677778
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHhhC
Q 005434 619 QNCIELENNLASVGDKDSLVNARKLFESALATY 651 (697)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~ 651 (697)
...+..--..| ++++|..+|+++-...
T Consensus 179 ~~Li~~~~~~g------~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 179 AALLKVSMDTK------NADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCC------CHHHHHHHHHHHHHhC
Confidence 88887777777 8999999999987653
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.52 E-value=0.0045 Score=50.77 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcC
Q 005434 591 VIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKLG 669 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~~~~-~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G 669 (697)
....|++++|...|++++...|.+.. .+...+......+ +.+.|...|++++...|.++..|.. +
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~------~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG------DWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34678999999999999999999888 8888888887888 8999999999999999988887742 4
Q ss_pred ChhhHHHHHHHHHhhcCC
Q 005434 670 TSETATAVYWRARKTLKD 687 (697)
Q Consensus 670 ~~~~a~~vy~ral~~~~~ 687 (697)
....+...|.++....++
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 455666666666555443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.50 E-value=0.012 Score=46.95 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (697)
+..+.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999999999999 78899888887655544
No 203
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.44 E-value=0.025 Score=61.76 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=80.3
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCc
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~ 520 (697)
.+..+.|...|++|+..+|.+...|...+..+...|++++|...+++|+ ...|++...|..........+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g--------- 88 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALG--------- 88 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHT---------
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC---------
Confidence 4678999999999999999999999999999999999999999999999 789999999998888877776
Q ss_pred cchHHHHHHHHHHHhhcChh
Q 005434 521 ADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 521 ~~~~~~~~~f~~al~~~p~~ 540 (697)
+.+++.+.|++|++..|..
T Consensus 89 -~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 89 -KFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp -CHHHHHHHHHHHHHHSTTC
T ss_pred -CHHHHHHHHHHHHHhCCCC
Confidence 4789999999999877654
No 204
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.43 E-value=0.086 Score=52.94 Aligned_cols=169 Identities=11% Similarity=-0.023 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHH-----HHHHHHH-HHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ-----LWLLRIS-VEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 464 lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~-----lW~~~i~-l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
.+..-+..+...|++++|.+.+.+++ ...|.... .|...+- +....+ +.+.+.+.|++|+...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~al~~~ 145 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKV----------DYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHTSS----------CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHH
Confidence 44455667778999999999999998 45554321 2221111 111112 4788888999998754
Q ss_pred Chhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC----hHHHHHHHHHHhCCHHHHHHHHHHH
Q 005434 538 SALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS----LPSAIINLVIQKDGIQQAREMYKRF 607 (697)
Q Consensus 538 p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~----l~~~yl~~~~~~~~~~~AR~iy~~~ 607 (697)
+... ...+|......+...+ +.+...|++|+........ ... +.......+...|++++|...|+++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~---~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc---cccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 3211 1223333333333333 5677788888765433221 111 1112233345678899999999998
Q ss_pred HhCCCC------CHHHHHHHHHHHhccCCCCCcccHHHH-HHHHHHHHhhCC
Q 005434 608 LALPRP------GLVLYQNCIELENNLASVGDKDSLVNA-RKLFESALATYD 652 (697)
Q Consensus 608 i~~~p~------~~~~~~~~i~lE~~~~~~~~~~~~~ra-R~lye~al~~~~ 652 (697)
+...+. -..++.........++ +.+.| ...|++|+....
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g------~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLE------YEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHH
Confidence 875321 1345555555666666 67777 888888886543
No 205
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.36 E-value=0.085 Score=48.98 Aligned_cols=84 Identities=12% Similarity=-0.105 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----cCCCcHHHHHHHHHHHHHhcccCC
Q 005434 442 HYISHLLTVYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG-----KLSDSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~-~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~-----~~P~~~~lW~~~i~l~~~~~~~~~ 515 (697)
+..+.+..+++.... +| .....+...+..+...|++++|...+++++.- ..|.....+.....+....+
T Consensus 6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 80 (203)
T 3gw4_A 6 HDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG---- 80 (203)
T ss_dssp -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC----
Confidence 456677774444333 44 56788889999999999999999999999831 12223444444444444444
Q ss_pred CCCCccchHHHHHHHHHHHhh
Q 005434 516 FSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~ 536 (697)
+.+.+.+.|++++..
T Consensus 81 ------~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 81 ------NWDAARRCFLEEREL 95 (203)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHH
Confidence 478888889998875
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.34 E-value=0.023 Score=46.31 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=51.3
Q ss_pred CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHH
Q 005434 173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~-lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW 229 (697)
+..+...|++++..+|.++. +|...+.... ..|+.+.|...|++++...|++...|
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 56889999999999999999 9999999886 78999999999999999999988877
No 207
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.27 E-value=0.25 Score=49.44 Aligned_cols=155 Identities=8% Similarity=-0.081 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTED------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIR 509 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~------lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~ 509 (697)
+..+.|...|++++...+.... .+...+.++...|++++|...+.+|+ ...+.. ...|.....+...
T Consensus 89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHH
Confidence 4578888999999887665432 22334566677889999999999998 443332 3344444444444
Q ss_pred hcccCCCCCCccchHHHHHHHHHHHh---hcChhh--hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCC
Q 005434 510 CVTRNSFSPSKADILSIFELLKCILT---KVSALE--SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFS 582 (697)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~f~~al~---~~p~~~--~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~ 582 (697)
.+ +.+.+...|++|+. ..|... ...++......+...+ +.+...|++++....... ....
T Consensus 168 ~~----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~---~~~~ 234 (293)
T 2qfc_A 168 NG----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---SMAL 234 (293)
T ss_dssp TT----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---BCSS
T ss_pred cC----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---cHHH
Confidence 44 47889999999994 333221 1133433333333333 677888888887664322 1333
Q ss_pred hHHHHHH---HHHHhCCHHHH-HHHHHHHHhC
Q 005434 583 LPSAIIN---LVIQKDGIQQA-REMYKRFLAL 610 (697)
Q Consensus 583 l~~~yl~---~~~~~~~~~~A-R~iy~~~i~~ 610 (697)
+...|.. .....|+.++| ...|++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3444433 34567899999 8889999863
No 208
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.24 E-value=0.13 Score=51.59 Aligned_cols=165 Identities=10% Similarity=-0.033 Sum_probs=79.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcHHH-----HHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh-hh
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-----WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL-ES 542 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-----W~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~-~~ 542 (697)
+..+...|++++|..++++++ ...|..... |...+-... .. ..+.+.+.+.|++|+...+.. +.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~-~~--------~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYV-LK--------KVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHH-TT--------SSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred HHHHHHHhhHHHHHHHHHHHh-ccccCChHHHHHHHHHHHHHHHH-Hc--------ccCHHHHHHHHHHHHHHhcccccH
Confidence 556678899999999999999 555554432 222121111 11 114788888999999843221 11
Q ss_pred ---HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 005434 543 ---ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPG 614 (697)
Q Consensus 543 ---~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~~ 614 (697)
..++......+...+ +.+...|++|+........ ........| .......|++++|...|++++...+..
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 112222222222222 4555566666654332210 011111122 222345566666666666666542211
Q ss_pred ------HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh
Q 005434 615 ------LVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (697)
Q Consensus 615 ------~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~ 650 (697)
..++.........++. ..+.|...|++|+..
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~-----~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEY-----EEAEIEDAYKKASFF 266 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHH
Confidence 2233333333333430 135566666665543
No 209
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.24 E-value=0.045 Score=49.64 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhcCCc
Q 005434 640 ARKLFESALATYD--QNTSLWRDYYSTETKLGTSETATAVYWRARKTLKDS 688 (697)
Q Consensus 640 aR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~~ 688 (697)
.+++|..+..... ....+|..|+.+-+..|+.+.|..||.+|++.-..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555554432 334566666666666666666666666666555444
No 210
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.18 E-value=0.15 Score=51.13 Aligned_cols=153 Identities=9% Similarity=0.026 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHhhCCCChhh-----HHH-HHHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-H---HH
Q 005434 345 SDDMHDKILSDMQRDFLVDPKY-----WDW-LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-I---FD 414 (697)
Q Consensus 345 ~~~~~~~il~~~~~~~p~~~~~-----w~~-~a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-l---w~ 414 (697)
..+.+..+++++....|..+.. |.. ++..+.. .++++.|...|+++++..+... . ..
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-------------KVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-------------SSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-------------ccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3567778888888877766552 332 4454433 3578999999999998543221 1 11
Q ss_pred HHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHc---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005434 415 LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---G----CLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (697)
Q Consensus 415 ~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~---~----~~~~~lw~~y~~l~~~~~~~~~A~~l~~~ 487 (697)
.|..+-.-.. ..+..+.|...|++|+.. . +....++...+..+...|++++|...+++
T Consensus 157 ~~~~lg~~y~---------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 157 IENAIANIYA---------------ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222211111 135578899999999852 1 12345788899999999999999999999
Q ss_pred HhhccCC------CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 488 LCSGKLS------DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 488 al~~~~P------~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
|+ ...+ ....+|..........|. +.+++.+.|++|+.
T Consensus 222 al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 222 AI-EISCRINSMALIGQLYYQRGECLRKLEY---------EEAEIEDAYKKASF 265 (293)
T ss_dssp HH-HHHHHTTBCTTHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHH
T ss_pred HH-HHHHHcCcHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHH
Confidence 98 4322 225666666666655553 24677777888875
No 211
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.023 Score=47.08 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCV 511 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~ 511 (697)
+..+.|...|++|+..+|.++..|...+..+...|++++|...+++++ ...|++ ...+..........+
T Consensus 18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999 788987 555555554444443
No 212
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.01 E-value=0.4 Score=45.40 Aligned_cols=189 Identities=12% Similarity=-0.001 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHccccCcHHHHHHHHHHHHhhCCCChhhHHHHHHhhcccCCCCCCCCcCccch
Q 005434 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (697)
Q Consensus 312 a~~iy~~al~~~p~~~~~~~~~~~~~~~fe~~~~~~~~~~il~~~~~~~p~~~~~w~~~a~~~l~~~~~~~~~~~~~~~~ 391 (697)
|...|+++.+. .+.+....+-.++..- ...+.+...++++.+. .++..+..++..+... . +..
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~-g---------~~~ 67 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSS---GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRN-P---------QQA 67 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSS-T---------TSC
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcC-C---------CCC
Confidence 45667777764 3344444444444331 2356777778777664 5688888999888642 1 124
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCC--cHHHHHHHH
Q 005434 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TEDIAHRYV 469 (697)
Q Consensus 392 ~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~--~~~lw~~y~ 469 (697)
+.++|...|+++++.-...-.+. ...+. . ... ...++.+++...|++|+..++. .+..+...+
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~-Lg~~y---~--~g~---------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIV-LARVL---V--NRQ---------AGATDVAHAITLLQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH-HHHHH---T--CGG---------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHH-HHHHH---H--cCC---------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 68999999999976532211111 11111 1 000 0134688999999999998773 478888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcC
Q 005434 470 TLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (697)
Q Consensus 470 ~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p 538 (697)
.++.. .+++++|...+++|+ .. |.+...+.....+...... .. ++ .+.+++...|++|+..-+
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~-~~-~~~~~a~~~Lg~~y~~g~g-g~-~~--~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSS-SL-SRTGYAEYWAGMMFQQGEK-GF-IE--PNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHH-HT-SCTTHHHHHHHHHHHHCBT-TT-BC--CCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHcCCC-CC-CC--CCHHHHHHHHHHHHHcCC
Confidence 88888 789999999999999 44 4443444333333332210 00 01 157889999999987543
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.16 Score=53.74 Aligned_cols=194 Identities=12% Similarity=0.026 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHH-HHH
Q 005434 442 HYISHLLTVYEKAEAMGCLT-----------------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW-LLR 503 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~-----------------~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW-~~~ 503 (697)
+..+.|...|.+++...+.. +......+.++...|++++|.+.+.+++ ...+...+-- ...
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVKV 96 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHHH
Confidence 34566777777777654432 1235667888899999999999999887 3333211111 111
Q ss_pred HH--HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCC
Q 005434 504 IS--VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKDG 575 (697)
Q Consensus 504 i~--l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~----~~~lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~ 575 (697)
+. +..-... + .+.+.+.+++++++...+... ...++...+..+...+ +.+..+++.+...+....
T Consensus 97 ~~~~l~~~~~~-----~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 97 LKTLIEKFEQV-----P--DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHCSC-----C--SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhC-----C--CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 1111111 1 146778888888886432211 2345554455444444 467777888777664432
Q ss_pred CCCCCCChHHHHH---HHHHHhCCHHHHHHHHHHHHhCC-----CCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 005434 576 GGESGFSLPSAII---NLVIQKDGIQQAREMYKRFLALP-----RPG--LVLYQNCIELENNLASVGDKDSLVNARKLFE 645 (697)
Q Consensus 576 ~~~~~~~l~~~yl---~~~~~~~~~~~AR~iy~~~i~~~-----p~~--~~~~~~~i~lE~~~~~~~~~~~~~raR~lye 645 (697)
. .......|+ ......|++++|+.+|++++... |+. ..++.....+....+ +.+.|...|.
T Consensus 170 ~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~y~~A~~~~~ 240 (434)
T 4b4t_Q 170 D---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK------DYKTAFSYFF 240 (434)
T ss_dssp C---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS------CHHHHHHHHH
T ss_pred c---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH------hHHHHHHHHH
Confidence 1 233333443 33456899999999999998642 222 124555555555556 8899999999
Q ss_pred HHHhhCC
Q 005434 646 SALATYD 652 (697)
Q Consensus 646 ~al~~~~ 652 (697)
.++..+.
T Consensus 241 ~a~~~~~ 247 (434)
T 4b4t_Q 241 ESFESYH 247 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887654
No 214
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.83 E-value=0.16 Score=46.96 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=88.9
Q ss_pred hcCCHHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh----hhHHHHHH
Q 005434 474 QLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL----ESESLWLM 548 (697)
Q Consensus 474 ~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~----~~~~lW~~ 548 (697)
..|++++|.++++... . .| .....|.....+....+ +.+.+.+.|++++...... .....+..
T Consensus 4 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 4 EAHDYALAERQAQALL-A-HPATASGARFMLGYVYAFMD----------RFDEARASFQALQQQAQKSGDHTAEHRALHQ 71 (203)
T ss_dssp ---CHHHHHHHHHHHH-T-STTTHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5688999988555544 3 44 45667766666666555 4788888999998743211 11223332
Q ss_pred HHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCC--C----HHH
Q 005434 549 ALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRP--G----LVL 617 (697)
Q Consensus 549 y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~~p~--~----~~~ 617 (697)
....+...+ +.+...+++++..+..... ........+ .......|++++|...|++++...+. . ...
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPE--DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 222222222 5667777777776543210 010111222 22234568888888888888864211 1 112
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
+...+.+....| +.+.|...|++++....
T Consensus 150 ~~~la~~~~~~g------~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 150 FRGLGDLAQQEK------NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------CHHHHHHHHHHHHHHHH
Confidence 344555555666 77888888888887644
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.63 E-value=0.7 Score=50.43 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh-cChhhhHHHHHHHHHHHHhhh-----------HHHHHHHH
Q 005434 498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALESESLWLMALKFFMNQK-----------HYFDKLVE 565 (697)
Q Consensus 498 ~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~-~p~~~~~~lW~~y~~~~~~~~-----------~~~~~l~~ 565 (697)
.++...|+...+.| +++++.++|++.... +++. ...|...+..+...+ +.+..+|+
T Consensus 27 ~~l~~~id~c~k~G----------~~~~A~~lf~~M~~~Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 27 ALLKQKLDMCSKKG----------DVLEALRLYDEARRNGVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHHTTTSC----------CHHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----------CHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 34555566555555 589999999998764 4333 344554444332211 35667787
Q ss_pred HHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHH
Q 005434 566 IALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLF 644 (697)
Q Consensus 566 ~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~ly 644 (697)
.+... +..+....+...+.-+.+.|.++.|..+|+..... ..|+...|...|.---..| +++.|..+|
T Consensus 95 ~M~~~-----G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g------~~~~A~~l~ 163 (501)
T 4g26_A 95 QMIVD-----KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG------DADKAYEVD 163 (501)
T ss_dssp HHHHT-----TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred HHHHh-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC------CHHHHHHHH
Confidence 76642 11122333556677777899999999999999875 5667777877776666777 899999999
Q ss_pred HHHHhhCC-CCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 645 ESALATYD-QNTSLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 645 e~al~~~~-~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
+.+...-- .+...|...++--.+.|+.+.|..++++....-
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 99987533 466888888888889999999999999876554
No 216
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.58 E-value=0.12 Score=45.28 Aligned_cols=65 Identities=11% Similarity=-0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhh
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~ 536 (697)
.++...+..+...|++++|...+.+++ ...|.. ...+..........+ +.+++.+.|++++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLG----------EFETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHH
Confidence 466777788888999999999999998 443321 123333334444444 478888888888875
Q ss_pred cC
Q 005434 537 VS 538 (697)
Q Consensus 537 ~p 538 (697)
.+
T Consensus 79 ~~ 80 (164)
T 3ro3_A 79 AR 80 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 217
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.40 E-value=0.11 Score=45.63 Aligned_cols=121 Identities=17% Similarity=0.033 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCCChHHH---HHHHHHHhCCHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhcc
Q 005434 558 HYFDKLVEIALISVAKDGGGESGFSLPSA---IINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNL 628 (697)
Q Consensus 558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~---yl~~~~~~~~~~~AR~iy~~~i~~~p~~------~~~~~~~i~lE~~~ 628 (697)
+.+...+++++........ ....... ........|.+++|...|++++...+.. ...+...+.+....
T Consensus 26 ~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 102 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 102 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 4566667776665443211 1111112 2223456799999999999999854321 23455556666667
Q ss_pred CCCCCcccHHHHHHHHHHHHhhCC--CC----chHHHHHHHHHHhcCChhhHHHHHHHHHhhcCC
Q 005434 629 ASVGDKDSLVNARKLFESALATYD--QN----TSLWRDYYSTETKLGTSETATAVYWRARKTLKD 687 (697)
Q Consensus 629 ~~~~~~~~~~raR~lye~al~~~~--~~----~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~~~ 687 (697)
+ +.+.|...|++++.... .+ ...+..........|+.+.|...+.+|++....
T Consensus 103 ~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 103 Q------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred h------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 7 89999999999998755 12 245666677777789999999999999987653
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.05 E-value=0.15 Score=45.72 Aligned_cols=94 Identities=10% Similarity=0.012 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCHHH
Q 005434 137 FSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFH-P-KVPGVWIYAAAWEFDHNLNVTA 210 (697)
Q Consensus 137 ~~~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~-p-~~~~lW~~~a~~e~~~~~~~~~ 210 (697)
.....+++.-|++.+...|.+.+..++|+--+.+.+ ..+...+|+..+... | +....++..+--.+ ..++++.
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHH
Confidence 345778889999999999999999999998776654 236788999999988 7 34555555555555 7899999
Q ss_pred HHHHHHHhhhhCCCCHHHHHH
Q 005434 211 ARALMQNGLRVCPTSEELWVE 231 (697)
Q Consensus 211 aR~~~~r~l~~~p~~~~lW~~ 231 (697)
||+.++++|+..|++.+.-..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999987654433
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.75 E-value=0.15 Score=41.64 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=57.8
Q ss_pred CCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHH
Q 005434 458 GCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (697)
Q Consensus 458 ~~~~~~lw~~y~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al 534 (697)
+|.++++|..|+..+...++ .++|..++++|+ ...|+++.-+..........+ +.+.+.+.|++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-~~dp~~~rA~~~lg~~~~~~g----------~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-QLEPYNEAALSLIANDHFISF----------RFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence 57889999999988865554 688999999999 788999888887777776665 4788888899988
Q ss_pred hhcCh
Q 005434 535 TKVSA 539 (697)
Q Consensus 535 ~~~p~ 539 (697)
...|.
T Consensus 71 ~~~p~ 75 (93)
T 3bee_A 71 DSNDP 75 (93)
T ss_dssp TCCCT
T ss_pred hhCCC
Confidence 87765
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.50 E-value=3.5 Score=42.60 Aligned_cols=150 Identities=11% Similarity=-0.080 Sum_probs=95.8
Q ss_pred HHHhhCCCChhhHHHH--HHhhcccCCCCCCCCcCccchHHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHhcCC
Q 005434 355 DMQRDFLVDPKYWDWL--ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAPK 427 (697)
Q Consensus 355 ~~~~~~p~~~~~w~~~--a~~~l~~~~~~~~~~~~~~~~~~~~a~~vye~al~~~~~~~-----lw~~yi~~~~~~~~~~ 427 (697)
.+...-|.++..|..+ |+.++... ....+.+|+..|++|++.-|+-. +...|+ .......
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~----------~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~--~~~~~~~- 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHG----------DDKSLNRASELLGEIVQSSPEFTYARAEKALVDI--VRHSQHP- 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHHHHSC-
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhccCC-
Confidence 4556678888887654 33333211 14668899999999999999743 223333 2111110
Q ss_pred cccccCCCCCchhHhHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 005434 428 KEETRDSELPSHVEHYISHLLTVYEKA--EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (697)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~ar~~ye~a--l~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (697)
. .......++..++.+ +..+|..+..+..++-.....|++++|...+++|+ ..+|+ ...|.....
T Consensus 252 --~---------~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln~s-~~a~~llG~ 318 (372)
T 3ly7_A 252 --L---------DEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLEMS-WLNYVLLGK 318 (372)
T ss_dssp --C---------CHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC-HHHHHHHHH
T ss_pred --C---------chhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCC-HHHHHHHHH
Confidence 0 012333444444432 23468888899888877777899999999999999 66664 444444444
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHhhcChh
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~ 540 (697)
+..-.| +.+++.+.|++|+..-|..
T Consensus 319 ~~~~~G----------~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 319 VYEMKG----------MNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTT----------CHHHHHHHHHHHHHHSCSH
T ss_pred HHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence 444445 4788999999999877743
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.29 E-value=1.6 Score=45.16 Aligned_cols=123 Identities=8% Similarity=0.000 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHhh--h-HH---HHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHH
Q 005434 522 DILSIFELLKCILTKVSALESE--SLWLMALKFFMNQ--K-HY---FDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ 593 (697)
Q Consensus 522 ~~~~~~~~f~~al~~~p~~~~~--~lW~~y~~~~~~~--~-~~---~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~ 593 (697)
+..+++++|++|++.-|..... .+...|+-..... . .. ++..+.. ........ ..+.+...+......
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~---~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELN---NLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCC---cCHHHHHHHHHHHHh
Confidence 5788999999999887753211 1222232111111 1 11 2222221 11111111 123333333333344
Q ss_pred hCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCc
Q 005434 594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (697)
Q Consensus 594 ~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~ 655 (697)
.|+++.|...+++++.+.| +...|.....+....| +.+.|-+.|++|+...|..+
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G------~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKG------MNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSCSHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHhcCCCcC
Confidence 6999999999999999875 4444444455555666 88999999999999988543
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.32 E-value=2.3 Score=34.89 Aligned_cols=73 Identities=12% Similarity=0.021 Sum_probs=54.4
Q ss_pred HHHHHHHHhc-CchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCHHHHHHHHH
Q 005434 163 KYMEFCRQRK-NGRMKKVLAQVIRFH-------PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (697)
Q Consensus 163 ~y~~~~~~~~-~~~~~~~~~ral~~~-------p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~~p~~~~lW~~y~~ 234 (697)
....++...+ +..+..-|+.|+... +..+.++..++.-.. ..|+++.|...++++++..|++..+.....-
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence 3344444445 567888888888864 234678888888776 7999999999999999999998877555543
Q ss_pred HH
Q 005434 235 ME 236 (697)
Q Consensus 235 ~E 236 (697)
++
T Consensus 89 ~~ 90 (104)
T 2v5f_A 89 FE 90 (104)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 223
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=86.50 E-value=4.9 Score=43.48 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHH
Q 005434 441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRIS 505 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~-----~~~~~---~lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~ 505 (697)
++..+.|..+|++++.. ++.++ ......+..+...|++++|..++++++.. .+|.-...+.....
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35678888899998874 44444 45667788899999999999999998831 12332333444444
Q ss_pred HHHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 506 VEIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
+....| +.+++..+|++|+.
T Consensus 402 ~~~~~G----------~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 402 TNWHAG----------HIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHTT----------CHHHHHHHHHHHHH
T ss_pred HHHHCC----------CHHHHHHHHHHHHH
Confidence 444455 47888888999986
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.49 E-value=9.9 Score=32.75 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=57.6
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHh----c
Q 005434 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK----L 668 (697)
Q Consensus 593 ~~~~~~~AR~iy~~~i~~~p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~----~ 668 (697)
..+++++|.+.|+++.....+...+.+..+.+. ..+ ...+.++|..+|++|... .++..+.....+-.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~-G~g---~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELNSGNGCRFLGDFYEN-GKY---VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-CSS---SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHc-CCC---CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 456788899999999987544334444444333 221 123889999999999876 345545555554444 6
Q ss_pred CChhhHHHHHHHHHhh
Q 005434 669 GTSETATAVYWRARKT 684 (697)
Q Consensus 669 G~~~~a~~vy~ral~~ 684 (697)
+|.+.|...|++|+..
T Consensus 111 ~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 111 KNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHC
Confidence 8889999999998765
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.32 E-value=4.7 Score=35.90 Aligned_cols=88 Identities=9% Similarity=0.108 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccC-C-CcHHHHHHHHHHHHHhcccCC
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKL-S-DSVQLWLLRISVEIRCVTRNS 515 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~---~~~~A~~l~~~al~~~~-P-~~~~lW~~~i~l~~~~~~~~~ 515 (697)
...+..++..|++++..++.+.+..+.|+-.+.+.+ +.+++..+++..+ ... | ...+.+....--..+.+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~~~kl~---- 85 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK---- 85 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHHHcc----
Confidence 567889999999999988999999999999999988 4568999999999 455 6 23333322221223333
Q ss_pred CCCCccchHHHHHHHHHHHhhcCh
Q 005434 516 FSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
+.+++++.++++|+.-|.
T Consensus 86 ------~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 86 ------EYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp ------CHHHHHHHHHHHHHHCTT
T ss_pred ------CHHHHHHHHHHHHhcCCC
Confidence 578999999999987764
No 226
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=86.31 E-value=3.3 Score=44.86 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHh
Q 005434 558 HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLAL-----PRPGLV---LYQNCIELEN 626 (697)
Q Consensus 558 ~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~-----~p~~~~---~~~~~i~lE~ 626 (697)
+.+..++++++.......+ +.++.+...+ ...+...|.+++|..+|++++.. .|..+. .+...+.+..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4566667777765433222 2244444443 33345679999999999999873 333333 5666777777
Q ss_pred ccCCCCCcccHHHHHHHHHHHHhhC----C-CCc---hHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 627 NLASVGDKDSLVNARKLFESALATY----D-QNT---SLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 627 ~~~~~~~~~~~~raR~lye~al~~~----~-~~~---~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
.+| +.+.|..+|++|+... | ++| ++-....+-..+.|..+.|..+|.+|....
T Consensus 405 ~~G------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 405 HAG------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HTT------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCC------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 8999999999999753 4 455 444455555666788889999999987654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=81.46 E-value=9 Score=31.14 Aligned_cols=68 Identities=9% Similarity=-0.090 Sum_probs=38.6
Q ss_pred HHhCCHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005434 592 IQKDGIQQAREMYKRFLALP-------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST 664 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~~-------p~~~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~lW~~y~~f 664 (697)
...+++..|..-|+.|+... +....++..++.-..++| +++.|...|++++...|.++.+.....-|
T Consensus 16 ~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g------~~~~A~~~~~~al~l~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 16 YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------DLDKALLLTKKLLELDPEHQRANGNLKYF 89 (104)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc------CHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence 34566666666666666532 112334555554445555 66777777777777766665554444433
Q ss_pred H
Q 005434 665 E 665 (697)
Q Consensus 665 E 665 (697)
+
T Consensus 90 ~ 90 (104)
T 2v5f_A 90 E 90 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=80.27 E-value=3.4 Score=43.92 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHc-----CCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhc-------cCCCcHHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAM-----GCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSG-------KLSDSVQLWLLRISV 506 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~-----~~~~~~---lw~~y~~l~~~~~~~~~A~~l~~~al~~-------~~P~~~~lW~~~i~l 506 (697)
+..+.|..+|++++.. +|.++. .....+..+...|++++|..++++++.. .+|+-...+.....+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3467888888888873 455554 4566778889999999999999998831 123223334444444
Q ss_pred HHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 507 EIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
....| +.+++..+|++|+.
T Consensus 392 ~~~qg----------~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLE----------NKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTT----------CHHHHHHHHHHHHH
T ss_pred HHhcc----------CHHHHHHHHHHHHH
Confidence 44444 36788888888875
No 229
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=79.88 E-value=3.6 Score=43.74 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh----CC-CCch---HH
Q 005434 595 DGIQQAREMYKRFLAL-----PRPGLV---LYQNCIELENNLASVGDKDSLVNARKLFESALAT----YD-QNTS---LW 658 (697)
Q Consensus 595 ~~~~~AR~iy~~~i~~-----~p~~~~---~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~----~~-~~~~---lW 658 (697)
|.+++|..+|++++.. .|..+. .+...+.+...+| +.+.|..+|++++.. .| .+++ .+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g------~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ------DWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc------CHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4566666666666552 222222 3334444444555 666666666666653 23 4443 34
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 659 RDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 659 ~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
...+..-...|+.+.|..+|++|+..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 444444556777777777777777654
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=78.77 E-value=30 Score=29.52 Aligned_cols=117 Identities=14% Similarity=0.016 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005434 389 VPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (697)
Q Consensus 389 ~~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y 468 (697)
+.+++++|...|+++.+.-+.... +-. .+. . ...++++...|++|... .++..+...
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~---~y~-~-------------g~~~~~A~~~~~~Aa~~--g~~~a~~~L 63 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC----LSL---VSN-S-------------QINKQKLFQYLSKACEL--NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH----HHH---HTC-T-------------TSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh----HHH---HHH-c-------------CCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 357789999999999987544322 111 111 1 12245599999999986 467778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhc
Q 005434 469 VTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (697)
Q Consensus 469 ~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~ 537 (697)
+.++.. .+++++|...+++|+.. .+..-......+... +. +++ .|.+++...|++|...-
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~-G~---g~~--~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGL---NDQDGCLILGYKQYA-GK---GVV--KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH-TS---SSC--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHC-CC---CCC--cCHHHHHHHHHHHHHCC
Confidence 888887 78999999999999943 333444333333333 11 111 16888999999998754
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=76.24 E-value=6.9 Score=41.51 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=61.2
Q ss_pred HHhCCHHHHHHHHHHHHhC-----CCCCH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhh----CC-CCch--
Q 005434 592 IQKDGIQQAREMYKRFLAL-----PRPGL---VLYQNCIELENNLASVGDKDSLVNARKLFESALAT----YD-QNTS-- 656 (697)
Q Consensus 592 ~~~~~~~~AR~iy~~~i~~-----~p~~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~----~~-~~~~-- 656 (697)
...|.+++|.++|++++.. .|..+ ..+...+.+...+| +.++|..+|++++.. .| .+|+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g------~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG------LLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3567888899999999864 22232 23444444555666 888899999888864 34 5553
Q ss_pred -HHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 657 -LWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 657 -lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
.+...+..-...|+.+.|..+|++|+..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45555556667899999999999998765
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.09 E-value=13 Score=31.78 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----chHHHHHHHHHHhC-CCCH--HHHHHHHHHHHHhcCCHHHH
Q 005434 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFH-PKVP--GVWIYAAAWEFDHNLNVTAA 211 (697)
Q Consensus 139 ~~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~-p~~~--~lW~~~a~~e~~~~~~~~~a 211 (697)
...+.+.-|.+.+...+.+.+.=+.|+--+.+.+. .+...+++..+..+ |... .++..+.-+. ..|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y--klg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--HhhhHHHH
Confidence 45667788888888888888888888876655442 23567777777765 4222 3444433333 68999999
Q ss_pred HHHHHHhhhhCCCCHHHH
Q 005434 212 RALMQNGLRVCPTSEELW 229 (697)
Q Consensus 212 R~~~~r~l~~~p~~~~lW 229 (697)
|..++..|+..|++.+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999976543
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=71.50 E-value=8.2 Score=40.90 Aligned_cols=84 Identities=8% Similarity=0.012 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCC-Cc---HHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSG---KLS-DS---VQLWLLRISV 506 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~-----~~~~~---~lw~~y~~l~~~~~~~~~A~~l~~~al~~---~~P-~~---~~lW~~~i~l 506 (697)
+..+.|...|++++.. .+.++ ......+..+...|++++|..++++++.. .+| +. ...+.....+
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 4567888999999874 34444 45666777788899999999999988831 122 23 3333333444
Q ss_pred HHHhcccCCCCCCccchHHHHHHHHHHHh
Q 005434 507 EIRCVTRNSFSPSKADILSIFELLKCILT 535 (697)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~f~~al~ 535 (697)
....| +.+++..+|++|+.
T Consensus 381 ~~~~g----------~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 381 QLHQG----------MFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHTT----------CHHHHHHHHHHHHH
T ss_pred HHhcC----------CHHHHHHHHHHHHH
Confidence 44444 36778888888876
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.66 E-value=1.6e+02 Score=30.32 Aligned_cols=167 Identities=15% Similarity=0.054 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--ccCCC--cHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHhhcChhh
Q 005434 466 HRYVTLYLQLGKLDEARKLAAKLCS--GKLSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (697)
Q Consensus 466 ~~y~~l~~~~~~~~~A~~l~~~al~--~~~P~--~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~al~~~p~~~ 541 (697)
...++++...|+.++...++..... ...|. ..++-..-+++..... + ..+...++...+++-....
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~-------~--~~~~~~~~~~~~~~~a~~~- 92 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD-------A--GTGIEVQLCKDCIEWAKQE- 92 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC-------C--CHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC-------C--cHHHHHHHHHHHHHHHHHH-
Confidence 4567888899999998888876541 12333 2455555555443321 1 2355566666666533222
Q ss_pred hHHHHH------HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHH---HHHHHHhCCHHHHHHHHHHHHhC
Q 005434 542 SESLWL------MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLAL 610 (697)
Q Consensus 542 ~~~lW~------~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~y---l~~~~~~~~~~~AR~iy~~~i~~ 610 (697)
..+|. ..+.++...+ ..+-.++.+....|..... ...+...| +.+....+++.+++..|.++...
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 23442 2344444444 4566777887777755321 22233333 34456789999999999999653
Q ss_pred -----CCCCHH--HHHHHHHHHh-ccCCCCCcccHHHHHHHHHHHHhhCC
Q 005434 611 -----PRPGLV--LYQNCIELEN-NLASVGDKDSLVNARKLFESALATYD 652 (697)
Q Consensus 611 -----~p~~~~--~~~~~i~lE~-~~~~~~~~~~~~raR~lye~al~~~~ 652 (697)
+||... +......+.. ..+ +...|...|=.++..+.
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~r------dyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADER------DFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHT
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhcc------CHHHHHHHHHHHHhccc
Confidence 334332 3333333444 445 78888888877776555
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=57.07 E-value=44 Score=37.92 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 005434 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (697)
Q Consensus 463 ~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (697)
.+-..-++|++..|+++-|.++..+|+ ...|....-|...++..+..+.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV-~~aPseF~tW~~La~vYi~l~d 386 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTST-ELALDSFESWYNLARCHIKKEE 386 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHH-hcCchhhHHHHHHHHHHHHhcc
Confidence 466667899999999999999999999 7899999999999988888764
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=51.63 E-value=1.2e+02 Score=26.36 Aligned_cols=85 Identities=7% Similarity=-0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---C-chHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK---N-GRMKKVLAQVIRFHPKVPG--VWIYAAAWEFDHNLNVTAARA 213 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~---~-~~~~~~~~ral~~~p~~~~--lW~~~a~~e~~~~~~~~~aR~ 213 (697)
..+++.-|++-..- +-+.+.=+.|+--+.+.+ . .+...+++..+...|.... ++..+.-+. ..|+++.||+
T Consensus 22 L~~lr~qY~~E~~~-~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y--kl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGGP-TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY--KLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTST-TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH--TTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH--HhhhHHHHHH
Confidence 44555566554222 346777777776555543 1 3567799999998886544 444444443 7899999999
Q ss_pred HHHHhhhhCCCCHH
Q 005434 214 LMQNGLRVCPTSEE 227 (697)
Q Consensus 214 ~~~r~l~~~p~~~~ 227 (697)
..++.|+..|++.+
T Consensus 99 y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 99 YVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHTCCCCHH
T ss_pred HHHHHHhcCCCcHH
Confidence 99999999998754
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.25 E-value=1.5e+02 Score=25.38 Aligned_cols=85 Identities=7% Similarity=-0.037 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---C-chHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHH
Q 005434 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK---N-GRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAARA 213 (697)
Q Consensus 140 ~~r~~~iyeral~~~p~~~~lW~~y~~~~~~~~---~-~~~~~~~~ral~~~p~~--~~lW~~~a~~e~~~~~~~~~aR~ 213 (697)
..+.+.-|++=+.-.| +.+.=+.|+--+.+.+ . .+...+++..+..+|.. ..++..+.-+. ..|+.+.||+
T Consensus 23 L~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y--klgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY--KLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--HHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH--HhhhHHHHHH
Confidence 4455556655332223 4566667765444433 1 25677889999888843 34554444443 6899999999
Q ss_pred HHHHhhhhCCCCHH
Q 005434 214 LMQNGLRVCPTSEE 227 (697)
Q Consensus 214 ~~~r~l~~~p~~~~ 227 (697)
..++.|+..|++.+
T Consensus 100 y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 100 YVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHTTCTTCHH
T ss_pred HHHHHHhhCCCCHH
Confidence 99999999998754
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.61 E-value=2.9e+02 Score=28.43 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHh---hcChhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCCChH------HHHHHH
Q 005434 523 ILSIFELLKCILT---KVSALESESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLP------SAIINL 590 (697)
Q Consensus 523 ~~~~~~~f~~al~---~~p~~~~~~lW~~y~~~~~~~~---~~~~~l~~~a~~~~~~~~~~~~~~~l~------~~yl~~ 590 (697)
.+++.+++..... .+|.....++-...++++.... +..-.+...+++.+... ...| ...+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~------~r~flr~~l~~kL~~l 108 (394)
T 3txn_A 35 AKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE------KRTFLRQSLEARLIAL 108 (394)
T ss_dssp HHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 4555555544322 3444445555555566554322 23334455555544332 1223 235667
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCC---CH---HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC---CCc----hH
Q 005434 591 VIQKDGIQQAREMYKRFLALPRP---GL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD---QNT----SL 657 (697)
Q Consensus 591 ~~~~~~~~~AR~iy~~~i~~~p~---~~---~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~---~~~----~l 657 (697)
+...|++.+|-+++.+.+.-+.. +. +++..=+.+...++ +..++|..|..|..... .+| .+
T Consensus 109 ~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~------n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 109 YFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS------NLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 77899999999999999875432 22 24444445555666 89999999999987543 122 45
Q ss_pred HHHHHHHHH-hcCChhhHHHHHHHHHhhcC
Q 005434 658 WRDYYSTET-KLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 658 W~~y~~fE~-~~G~~~~a~~vy~ral~~~~ 686 (697)
-..-.-... ..|+.+.|...|-.|..++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 555566677 78999999999888877765
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=42.26 E-value=2.6e+02 Score=32.94 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=62.7
Q ss_pred HhHHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCC
Q 005434 441 EHYISHLLTVYEKAEAM----GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~----~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~ 516 (697)
.+.+++|..+|+..... ...+...|...+.-+.+.|+.++|.+++++.....+..+...+..-|.-..+.|.
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~---- 215 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ---- 215 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----
Confidence 35688999999764421 2346678888889999999999999999988766677777888887776666553
Q ss_pred CCCccchHHHHHHHHHHHh
Q 005434 517 SPSKADILSIFELLKCILT 535 (697)
Q Consensus 517 ~~~~~~~~~~~~~f~~al~ 535 (697)
..+.+.++|++...
T Consensus 216 -----~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 216 -----DAGTIERCLEQMSQ 229 (1134)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHH
Confidence 23556666666654
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.41 E-value=2.4e+02 Score=29.27 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHhhCC--CCch
Q 005434 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTS 656 (697)
Q Consensus 582 ~l~~~yl~~~~~~~~~~~AR~iy~~~i~~~p~~---~~~~~~~i~lE~~~~~~~~~~~~~raR~lye~al~~~~--~~~~ 656 (697)
.......++..+.|+++.|.++|.++...+... ..++..-+.+....+ +...+...+.++-.... .+++
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~------d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN------DQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhhhcCCCHH
Confidence 334456677778899999999999888755433 456777777776666 78888888888876654 3344
Q ss_pred HHHHHHH----HHHhcCChhhHHHHHHHHHhhcC
Q 005434 657 LWRDYYS----TETKLGTSETATAVYWRARKTLK 686 (697)
Q Consensus 657 lW~~y~~----fE~~~G~~~~a~~vy~ral~~~~ 686 (697)
....+-. .....++...|...|--+..++.
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3332222 23335788888887777766654
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.96 E-value=2.2e+02 Score=33.48 Aligned_cols=105 Identities=9% Similarity=0.009 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCCChHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 005434 545 LWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNC 621 (697)
Q Consensus 545 lW~~y~~~~~~~~--~~~~~l~~~a~~~~~~~~~~~~~~~l~~~yl~~~~~~~~~~~AR~iy~~~i~~-~p~~~~~~~~~ 621 (697)
-+...++-+...+ +.+..+|..+........ ......+...+.-+-+.|.+++|+++|+..... +.|+...|...
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~--~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK--LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT--TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC--CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3555565555444 577788887765532211 112223455566667788999999999988764 55666666666
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHhhCCCCchH
Q 005434 622 IELENNLASVGDKDSLVNARKLFESALATYDQNTSL 657 (697)
Q Consensus 622 i~lE~~~~~~~~~~~~~raR~lye~al~~~~~~~~l 657 (697)
|.=--+.|. ..+.|..+|+.+... |-.++.
T Consensus 207 I~glcK~G~-----~~e~A~~Ll~EM~~k-G~~PD~ 236 (1134)
T 3spa_A 207 LQCMGRQDQ-----DAGTIERCLEQMSQE-GLKLQA 236 (1134)
T ss_dssp HHHHHHHTC-----CHHHHHHHHHHHHHH-TCCSHH
T ss_pred HHHHHhCCC-----cHHHHHHHHHHHHHc-CCCCCh
Confidence 653323330 247888888888865 444443
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=31.40 E-value=5.7e+02 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcccCCCCCCccchHHHHHHHHHH
Q 005434 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (697)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~~~~~~~~~~~~~f~~a 533 (697)
.+....|+++.|.++.+ ..++...|....++.++.+ +++.+...|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~----------~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT------DESAEMKWRALGDASLQRF----------NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcC----------CHHHHHHHHHHc
Confidence 34456788888876642 2345789988888887766 367777777775
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=28.54 E-value=1.5e+02 Score=30.48 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 005434 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (697)
Q Consensus 173 ~~~~~~~~~ral~~~p~~~~lW~~~a~~e~~~~~~~~~aR~~~~r~l~~ 221 (697)
+..+...+.+++..+|-+..+|...+.... ..|+...|...|+++-+.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 345667777778888888888887777775 677877777777766543
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=27.18 E-value=1.8e+02 Score=28.20 Aligned_cols=54 Identities=9% Similarity=0.096 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCc
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (697)
+.++.++......+..+|.+.++-..+++++.-.|+.++|.+=++.+. +..|..
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a-~l~p~~ 64 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI-KLFPEY 64 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGG
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchh
Confidence 568889999999999999999999999999999999999988888777 667764
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=26.37 E-value=4.1e+02 Score=29.99 Aligned_cols=45 Identities=7% Similarity=-0.096 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005434 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA 486 (697)
Q Consensus 442 ~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~A~~l~~ 486 (697)
+..+-|..+-.+|+..-|.....|...++.+...|+++.|.-.+.
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 557889999999999999999999999999999999999975543
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=25.75 E-value=1.7e+02 Score=29.93 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 005434 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (697)
Q Consensus 467 ~y~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (697)
..++.+...|++.+|...+.+++ ...|-+..+|...+......|
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~-~~~P~~E~~~~~lm~al~~~G 219 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALT-FEHPYREPLWTQLITAYYLSD 219 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC
Confidence 34556666777777777777777 677777777777776666555
No 247
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=24.22 E-value=82 Score=17.74 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005434 97 AYIEYESQLDALRRLRKK 114 (697)
Q Consensus 97 ~Yi~~E~~~~~l~~~R~~ 114 (697)
.|-+.|..++.||+.|++
T Consensus 6 ~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 6 XYKELEDXQERLRKXRKK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466778888888887753
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=24.21 E-value=3.4e+02 Score=23.22 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCc-HHHHHHH
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRY 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~-~~lw~~y 468 (697)
...+...+..|+.-+...|+...-..|+--+.. +. ...++.+...+++..+..+|.. -+.+...
T Consensus 20 ~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~-----S~----------~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyL 84 (134)
T 3o48_A 20 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL 84 (134)
T ss_dssp HHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHH-----SS----------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHc-----CC----------CHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 567888888887754444555432334422222 11 1356778888888888877743 3444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (697)
+-=.-+.|++++|+...+..+ ..-|++.
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL-~~eP~N~ 112 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLF-EHERNNK 112 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-TTCTTCH
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hhCCCCH
Confidence 444568899999999999999 7888863
No 249
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.14 E-value=1.5e+02 Score=19.15 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=21.6
Q ss_pred hhHhHHHHHHhCCCCHHHHHHHHHhhHHHHHHH
Q 005434 53 MVDELDDLERRGLFTRHEISEIVKQRRKFEYRL 85 (697)
Q Consensus 53 ~~~e~~~~~~~~~f~~~Ei~~i~~kR~~fE~~l 85 (697)
+-.|+..++..| |+++|+..+-..-...|.+|
T Consensus 5 lkselqalkkeg-fspeelaaleselqalekkl 36 (48)
T 1g6u_A 5 LKSELQALKKEG-FSPEELAALESELQALEKKL 36 (48)
T ss_dssp HHHHHHHHHHTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHH
Confidence 345777776554 89999887766555666554
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.40 E-value=3.8e+02 Score=23.19 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcCCcccccCCCCCchhHhHHHHHHHHHHHHHHcCCCcHHHHHHH-
Q 005434 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY- 468 (697)
Q Consensus 390 ~~~~~~a~~vye~al~~~~~~~lw~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~~ye~al~~~~~~~~lw~~y- 468 (697)
+..+...+..|+.-+...++...-..|+--+.. +. ...++.+...+++..+...|....-.+-|
T Consensus 19 ~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~-----S~----------~~~di~~GI~LLe~l~~~~~~~~RdcLYyL 83 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL 83 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHH-----SS----------SHHHHHHHHHHHHHHHHHCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-----CC----------CHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 467888888887653344555433335433222 11 24567788889999888777643322222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCcH
Q 005434 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (697)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (697)
+-=.-+.|++++|+...+..+ +.-|++.
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL-~~eP~n~ 111 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLF-EHERNNK 111 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-HTCCCCH
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hcCCCcH
Confidence 223557899999999999999 7888763
No 251
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.13 E-value=2e+02 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHHhhCCCCchHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 005434 635 DSLVNARKLFESALATYDQNTSLWRDYYSTETKLGTSETATAVYWRARKTL 685 (697)
Q Consensus 635 ~~~~raR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~a~~vy~ral~~~ 685 (697)
..+..+|..|++|+.+. ..=++.++ .|+.+.|..+|.+++..+
T Consensus 10 ~~l~~ik~~h~~AF~~I-------s~AL~~DE-~g~k~~Al~lYk~GI~eL 52 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFV-------NKGLNTDE-LGQKEEAKNYYKQGIGHL 52 (116)
T ss_dssp SHHHHHHHHHHHHHHHH-------HHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhhh-cCCHHHHHHHHHHHHHHH
Confidence 36677777777777642 22333443 488888888888887765
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=21.78 E-value=3.6e+02 Score=22.70 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=60.6
Q ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhccC-CCcHHHHHHHHHHH-HHhcccCC
Q 005434 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE---ARKLAAKLCSGKL-SDSVQLWLLRISVE-IRCVTRNS 515 (697)
Q Consensus 441 ~~~~~~ar~~ye~al~~~~~~~~lw~~y~~l~~~~~~~~~---A~~l~~~al~~~~-P~~~~lW~~~i~l~-~~~~~~~~ 515 (697)
...+..++..|.++...++.+.+.-+.|+--+.+.++... +..+++..+ ... |....-..-++.+- .+.+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg---- 88 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK---- 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhh----
Confidence 3567889999999988888888999999988888887666 777888888 443 53222222222221 1233
Q ss_pred CCCCccchHHHHHHHHHHHhhcCh
Q 005434 516 FSPSKADILSIFELLKCILTKVSA 539 (697)
Q Consensus 516 ~~~~~~~~~~~~~~f~~al~~~p~ 539 (697)
+.++++..++..|+.-|.
T Consensus 89 ------~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 ------EYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp ------CHHHHHHHHHHHHHHCTT
T ss_pred ------hHHHHHHHHHHHHHhCCC
Confidence 478888888888876664
Done!