Query 005436
Match_columns 697
No_of_seqs 478 out of 3112
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 23:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1E-140 3E-145 1102.8 58.9 636 33-692 34-670 (674)
2 KOG0923 mRNA splicing factor A 100.0 5E-135 1E-139 1045.7 51.8 632 40-693 255-887 (902)
3 KOG0924 mRNA splicing factor A 100.0 8E-135 2E-139 1045.1 50.5 628 41-692 347-976 (1042)
4 KOG0925 mRNA splicing factor A 100.0 4E-132 9E-137 991.7 50.6 639 28-696 26-674 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 6E-116 1E-120 1007.0 63.0 620 44-696 68-704 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-111 5E-116 973.2 63.6 619 43-695 60-693 (1283)
7 KOG0926 DEAH-box RNA helicase 100.0 5E-109 1E-113 866.6 44.9 634 40-692 246-1026(1172)
8 COG1643 HrpA HrpA-like helicas 100.0 1E-106 3E-111 900.1 51.6 624 34-686 34-708 (845)
9 KOG0920 ATP-dependent RNA heli 100.0 9E-106 2E-110 887.0 44.4 636 32-689 155-849 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-88 5.8E-93 767.5 57.7 574 49-692 1-581 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1E-87 2.2E-92 765.0 57.7 565 48-691 3-573 (812)
12 KOG0921 Dosage compensation co 100.0 8.8E-63 1.9E-67 523.4 23.9 645 35-689 363-1073(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 4.2E-54 9.1E-59 477.3 36.0 394 53-501 167-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 2E-43 4.3E-48 404.8 37.2 443 30-504 4-494 (674)
15 PRK02362 ski2-like helicase; P 100.0 3E-42 6.6E-47 397.5 42.7 447 31-503 5-515 (737)
16 PRK00254 ski2-like helicase; P 100.0 1.4E-39 3E-44 374.5 37.5 455 31-516 5-523 (720)
17 KOG0331 ATP-dependent RNA heli 100.0 6E-40 1.3E-44 344.5 25.7 340 28-413 92-452 (519)
18 KOG0330 ATP-dependent RNA heli 100.0 8.2E-41 1.8E-45 328.3 17.6 334 28-411 62-409 (476)
19 PRK11776 ATP-dependent RNA hel 100.0 9.8E-40 2.1E-44 358.9 26.8 338 27-413 4-353 (460)
20 PTZ00110 helicase; Provisional 100.0 4.3E-39 9.4E-44 357.1 26.4 338 28-412 131-487 (545)
21 PRK04837 ATP-dependent RNA hel 100.0 7.5E-39 1.6E-43 348.0 25.1 334 28-411 9-364 (423)
22 PRK11192 ATP-dependent RNA hel 100.0 1.7E-38 3.7E-43 346.9 27.5 336 29-413 3-356 (434)
23 PRK10590 ATP-dependent RNA hel 100.0 1.5E-38 3.3E-43 347.8 26.2 335 29-412 3-355 (456)
24 PTZ00424 helicase 45; Provisio 100.0 1.5E-38 3.2E-43 345.0 25.8 341 25-413 26-378 (401)
25 COG0513 SrmB Superfamily II DN 100.0 5.1E-38 1.1E-42 345.1 27.1 337 26-409 28-380 (513)
26 COG1204 Superfamily II helicas 100.0 3.4E-37 7.5E-42 346.9 33.3 426 53-503 35-527 (766)
27 PLN00206 DEAD-box ATP-dependen 100.0 4.7E-38 1E-42 348.0 25.4 337 28-413 122-479 (518)
28 PRK01297 ATP-dependent RNA hel 100.0 8.4E-38 1.8E-42 344.4 25.7 333 28-411 88-444 (475)
29 PRK04537 ATP-dependent RNA hel 100.0 7.3E-38 1.6E-42 348.3 25.2 334 28-411 10-366 (572)
30 PRK11634 ATP-dependent RNA hel 100.0 1.8E-37 4E-42 346.8 27.6 335 28-411 7-354 (629)
31 COG1202 Superfamily II helicas 100.0 5.4E-37 1.2E-41 314.4 23.5 438 30-518 197-680 (830)
32 TIGR03817 DECH_helic helicase/ 100.0 3.3E-36 7.2E-41 343.2 28.3 324 47-407 33-384 (742)
33 PLN03137 ATP-dependent DNA hel 100.0 4.1E-36 9E-41 339.1 28.5 308 50-412 460-790 (1195)
34 TIGR00614 recQ_fam ATP-depende 100.0 9.7E-36 2.1E-40 326.6 29.7 311 51-413 12-337 (470)
35 KOG0343 RNA Helicase [RNA proc 100.0 1.6E-36 3.4E-41 309.6 19.0 337 27-411 69-424 (758)
36 KOG0345 ATP-dependent RNA heli 100.0 5.6E-36 1.2E-40 300.9 22.0 332 51-428 29-385 (567)
37 KOG0333 U5 snRNP-like RNA heli 100.0 4.2E-36 9.1E-41 305.1 20.6 333 27-410 245-625 (673)
38 KOG0328 Predicted ATP-dependen 100.0 4.8E-36 1E-40 282.4 19.3 338 28-413 28-377 (400)
39 KOG0338 ATP-dependent RNA heli 100.0 1.8E-36 3.8E-41 306.6 14.7 337 28-411 182-535 (691)
40 KOG0342 ATP-dependent RNA heli 100.0 2.3E-35 5.1E-40 298.7 22.2 335 29-411 84-439 (543)
41 PRK11057 ATP-dependent DNA hel 100.0 6.5E-35 1.4E-39 328.3 27.7 319 41-413 15-347 (607)
42 PRK13767 ATP-dependent helicas 100.0 9.9E-34 2.1E-38 329.5 30.0 326 51-407 33-398 (876)
43 TIGR01389 recQ ATP-dependent D 100.0 3.4E-34 7.3E-39 323.7 23.8 307 51-413 14-335 (591)
44 KOG0326 ATP-dependent RNA heli 100.0 1.3E-34 2.8E-39 277.2 13.8 311 53-411 110-431 (459)
45 KOG0952 DNA/RNA helicase MER3/ 100.0 7.7E-33 1.7E-37 301.8 27.8 476 52-555 112-683 (1230)
46 COG1201 Lhr Lhr-like helicases 100.0 1E-32 2.2E-37 306.1 28.7 385 39-466 12-438 (814)
47 KOG0340 ATP-dependent RNA heli 100.0 2.7E-33 5.7E-38 272.4 18.4 320 52-412 31-364 (442)
48 COG1111 MPH1 ERCC4-like helica 100.0 4.7E-33 1E-37 284.4 20.2 326 49-409 14-481 (542)
49 KOG0335 ATP-dependent RNA heli 100.0 1.4E-33 3.1E-38 291.2 15.9 316 52-407 98-442 (482)
50 KOG0347 RNA helicase [RNA proc 100.0 1.3E-34 2.8E-39 295.7 4.4 349 27-413 181-574 (731)
51 KOG0336 ATP-dependent RNA heli 100.0 8.6E-33 1.9E-37 272.7 16.1 310 55-413 247-576 (629)
52 PRK09751 putative ATP-dependen 100.0 4.6E-32 1E-36 319.4 24.6 294 70-397 1-371 (1490)
53 TIGR00580 mfd transcription-re 100.0 7.6E-32 1.6E-36 310.0 25.6 305 50-409 451-770 (926)
54 KOG0339 ATP-dependent RNA heli 100.0 2.2E-32 4.7E-37 276.6 18.3 316 53-412 248-578 (731)
55 COG0514 RecQ Superfamily II DN 100.0 2.5E-32 5.5E-37 292.5 19.6 309 53-412 20-340 (590)
56 KOG0348 ATP-dependent RNA heli 100.0 1.8E-31 3.8E-36 272.0 23.5 347 51-416 160-563 (708)
57 PRK10917 ATP-dependent DNA hel 100.0 3.5E-31 7.7E-36 301.1 27.2 310 43-407 252-587 (681)
58 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4E-31 8.7E-36 295.1 24.7 343 48-440 13-422 (844)
59 TIGR00643 recG ATP-dependent D 100.0 9E-31 2E-35 296.0 26.7 315 42-407 225-564 (630)
60 KOG0332 ATP-dependent RNA heli 100.0 4.2E-31 9.2E-36 258.5 19.7 339 28-410 91-444 (477)
61 PRK10689 transcription-repair 100.0 6.2E-31 1.4E-35 308.9 24.8 311 43-408 591-918 (1147)
62 KOG0354 DEAD-box like helicase 100.0 6.3E-31 1.4E-35 284.6 22.4 338 47-409 59-529 (746)
63 KOG0350 DEAD-box ATP-dependent 100.0 3.3E-31 7.2E-36 268.3 14.8 319 50-412 159-543 (620)
64 KOG0341 DEAD-box protein abstr 100.0 7.5E-32 1.6E-36 264.3 9.6 339 28-413 171-532 (610)
65 KOG0346 RNA helicase [RNA proc 100.0 1.3E-29 2.8E-34 252.9 19.9 337 28-412 20-413 (569)
66 TIGR03158 cas3_cyano CRISPR-as 100.0 2.8E-28 6.1E-33 257.3 28.8 290 54-395 1-357 (357)
67 KOG0327 Translation initiation 100.0 2.1E-29 4.7E-34 249.2 16.4 336 27-413 26-374 (397)
68 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-28 3.5E-33 262.0 23.4 299 67-409 1-336 (358)
69 KOG0951 RNA helicase BRR2, DEA 100.0 3.5E-28 7.6E-33 268.5 24.8 433 51-507 310-836 (1674)
70 PHA02558 uvsW UvsW helicase; P 100.0 4E-28 8.6E-33 267.8 25.0 311 48-401 112-443 (501)
71 COG1205 Distinct helicase fami 100.0 2.2E-28 4.7E-33 279.8 23.2 327 46-409 66-422 (851)
72 KOG0948 Nuclear exosomal RNA h 100.0 2.1E-29 4.5E-34 265.5 12.9 323 50-409 129-539 (1041)
73 KOG0344 ATP-dependent RNA heli 100.0 5.5E-29 1.2E-33 258.6 14.8 310 55-412 163-498 (593)
74 PRK13766 Hef nuclease; Provisi 100.0 1.1E-27 2.3E-32 280.3 27.1 335 47-411 12-481 (773)
75 KOG4284 DEAD box protein [Tran 100.0 1.3E-28 2.7E-33 255.8 16.4 316 48-409 46-379 (980)
76 KOG0334 RNA helicase [RNA proc 100.0 4.1E-28 8.8E-33 267.8 17.0 335 28-410 366-721 (997)
77 KOG0947 Cytoplasmic exosomal R 100.0 9.8E-28 2.1E-32 259.1 16.5 323 48-408 295-722 (1248)
78 COG4581 Superfamily II RNA hel 99.9 9.8E-27 2.1E-31 261.9 24.0 331 47-407 116-535 (1041)
79 PRK09401 reverse gyrase; Revie 99.9 3.4E-26 7.3E-31 269.7 26.9 276 48-364 78-410 (1176)
80 KOG0352 ATP-dependent DNA heli 99.9 4.9E-27 1.1E-31 233.4 12.6 307 57-413 28-366 (641)
81 TIGR00603 rad25 DNA repair hel 99.9 1.2E-25 2.6E-30 249.0 24.2 310 49-413 254-611 (732)
82 KOG0337 ATP-dependent RNA heli 99.9 1.5E-26 3.2E-31 230.1 12.4 337 27-410 21-369 (529)
83 KOG0351 ATP-dependent DNA heli 99.9 4.9E-26 1.1E-30 258.3 16.1 313 51-413 265-596 (941)
84 TIGR03714 secA2 accessory Sec 99.9 2E-24 4.3E-29 239.3 27.6 327 46-410 64-538 (762)
85 PRK05580 primosome assembly pr 99.9 6.9E-25 1.5E-29 248.6 24.6 318 48-404 142-544 (679)
86 COG1200 RecG RecG-like helicas 99.9 3.5E-25 7.6E-30 236.7 19.1 314 41-410 251-592 (677)
87 TIGR00595 priA primosomal prot 99.9 3E-25 6.5E-30 242.7 19.0 301 69-408 1-381 (505)
88 COG4098 comFA Superfamily II D 99.9 4.6E-24 1E-28 207.5 24.7 292 56-405 107-412 (441)
89 PRK12898 secA preprotein trans 99.9 3E-24 6.5E-29 235.3 26.2 106 276-410 473-587 (656)
90 PRK09200 preprotein translocas 99.9 1.6E-24 3.4E-29 242.6 24.1 107 275-410 427-542 (790)
91 COG1061 SSL2 DNA or RNA helica 99.9 4.7E-24 1E-28 230.7 23.6 308 45-397 31-376 (442)
92 PRK14701 reverse gyrase; Provi 99.9 2.2E-24 4.7E-29 259.5 21.1 316 48-409 77-456 (1638)
93 PRK09694 helicase Cas3; Provis 99.9 2.9E-23 6.3E-28 236.8 29.0 317 49-397 285-662 (878)
94 TIGR00963 secA preprotein tran 99.9 7.2E-24 1.6E-28 233.3 22.6 324 49-410 55-518 (745)
95 TIGR01054 rgy reverse gyrase. 99.9 1.8E-23 3.9E-28 247.1 24.7 280 47-367 75-412 (1171)
96 KOG0950 DNA polymerase theta/e 99.9 8.6E-24 1.9E-28 230.8 16.4 340 51-411 224-613 (1008)
97 PRK11448 hsdR type I restricti 99.9 9.6E-23 2.1E-27 239.2 26.5 334 49-407 412-813 (1123)
98 COG1197 Mfd Transcription-repa 99.9 1.9E-22 4E-27 227.6 23.8 303 53-410 597-914 (1139)
99 KOG0353 ATP-dependent DNA heli 99.9 2.8E-22 6.1E-27 196.6 20.4 329 30-410 74-468 (695)
100 KOG0329 ATP-dependent RNA heli 99.9 2.9E-22 6.3E-27 186.8 12.6 313 18-413 32-359 (387)
101 PRK04914 ATP-dependent helicas 99.8 1.3E-19 2.9E-24 208.2 24.0 117 267-409 484-605 (956)
102 PRK12906 secA preprotein trans 99.8 3.3E-19 7.2E-24 198.5 20.4 107 274-409 438-553 (796)
103 PRK13104 secA preprotein trans 99.8 8.6E-19 1.9E-23 196.1 22.9 124 47-174 77-212 (896)
104 PF07717 OB_NTP_bind: Oligonuc 99.8 2.7E-20 5.8E-25 163.4 8.6 101 584-687 1-114 (114)
105 PRK12904 preprotein translocas 99.8 7.9E-19 1.7E-23 196.3 21.6 134 261-407 417-571 (830)
106 KOG0949 Predicted helicase, DE 99.8 1E-18 2.2E-23 190.1 20.1 162 49-216 510-682 (1330)
107 COG1203 CRISPR-associated heli 99.8 1.6E-18 3.4E-23 198.8 19.6 312 50-409 195-550 (733)
108 KOG0349 Putative DEAD-box RNA 99.8 1.9E-19 4.1E-24 179.7 10.2 289 95-407 287-613 (725)
109 COG1198 PriA Primosomal protei 99.8 3.9E-18 8.4E-23 189.2 19.0 317 48-403 196-597 (730)
110 COG4096 HsdR Type I site-speci 99.8 8.3E-17 1.8E-21 175.0 25.3 349 52-438 167-576 (875)
111 KOG0921 Dosage compensation co 99.8 3.6E-20 7.9E-25 199.3 -1.3 465 46-523 402-896 (1282)
112 PRK13107 preprotein translocas 99.8 4E-17 8.6E-22 182.2 20.9 117 260-407 435-589 (908)
113 PF04408 HA2: Helicase associa 99.7 7.5E-18 1.6E-22 143.7 8.6 91 459-550 1-102 (102)
114 PRK12899 secA preprotein trans 99.7 8.3E-16 1.8E-20 171.9 25.0 120 51-174 93-225 (970)
115 cd00268 DEADc DEAD-box helicas 99.7 1.3E-16 2.8E-21 156.0 14.7 178 29-208 1-186 (203)
116 TIGR00348 hsdR type I site-spe 99.7 9.5E-16 2.1E-20 174.2 20.5 292 65-400 263-638 (667)
117 PF00270 DEAD: DEAD/DEAH box h 99.7 1.3E-16 2.8E-21 151.2 10.9 156 53-212 2-167 (169)
118 KOG0953 Mitochondrial RNA heli 99.7 1.2E-15 2.5E-20 157.9 17.1 276 64-409 190-477 (700)
119 COG0556 UvrB Helicase subunit 99.7 1.1E-14 2.3E-19 150.6 22.5 125 260-408 432-556 (663)
120 TIGR01407 dinG_rel DnaQ family 99.6 1.2E-13 2.6E-18 162.2 28.5 139 257-405 656-811 (850)
121 COG1110 Reverse gyrase [DNA re 99.6 1.1E-13 2.3E-18 153.2 25.8 276 48-366 80-419 (1187)
122 smart00847 HA2 Helicase associ 99.6 9.3E-16 2E-20 128.9 7.5 90 459-550 1-92 (92)
123 KOG1123 RNA polymerase II tran 99.6 3.2E-15 7E-20 152.5 11.2 310 51-411 303-655 (776)
124 KOG4150 Predicted ATP-dependen 99.6 2.8E-15 6.1E-20 154.7 10.9 318 50-404 286-635 (1034)
125 TIGR00631 uvrb excinuclease AB 99.6 9.6E-15 2.1E-19 164.1 14.9 114 274-409 440-553 (655)
126 PLN03142 Probable chromatin-re 99.6 1.5E-13 3.2E-18 159.3 22.0 111 275-412 486-602 (1033)
127 cd00079 HELICc Helicase superf 99.5 4E-14 8.6E-19 127.7 10.4 104 275-405 27-131 (131)
128 PRK12326 preprotein translocas 99.5 1.5E-12 3.3E-17 142.5 24.3 118 259-407 412-545 (764)
129 PRK07246 bifunctional ATP-depe 99.5 1.1E-11 2.4E-16 143.7 30.5 134 257-405 630-780 (820)
130 PF00271 Helicase_C: Helicase 99.5 3.7E-14 8E-19 115.3 4.1 71 309-397 7-77 (78)
131 KOG0951 RNA helicase BRR2, DEA 99.5 1.1E-12 2.4E-17 147.1 16.7 319 63-421 1157-1508(1674)
132 PRK12900 secA preprotein trans 99.4 8.7E-13 1.9E-17 148.4 14.4 120 261-411 585-713 (1025)
133 PRK13103 secA preprotein trans 99.4 3.4E-12 7.3E-17 143.3 19.0 116 57-174 87-212 (913)
134 TIGR02562 cas3_yersinia CRISPR 99.4 1.7E-11 3.6E-16 138.9 23.5 97 279-399 759-881 (1110)
135 PF07652 Flavi_DEAD: Flaviviru 99.4 1.8E-12 3.8E-17 113.9 12.4 137 63-209 2-139 (148)
136 PRK05298 excinuclease ABC subu 99.4 7E-13 1.5E-17 150.3 11.9 112 275-408 445-556 (652)
137 smart00487 DEXDc DEAD-like hel 99.4 6.2E-12 1.3E-16 121.9 16.5 156 49-206 7-170 (201)
138 PRK08074 bifunctional ATP-depe 99.4 8.1E-11 1.8E-15 139.0 28.1 141 257-405 734-890 (928)
139 PRK12903 secA preprotein trans 99.4 3.1E-11 6.7E-16 134.2 22.4 117 260-407 412-537 (925)
140 cd00046 DEXDc DEAD-like helica 99.4 6.2E-12 1.3E-16 114.6 14.0 138 66-206 1-144 (144)
141 CHL00122 secA preprotein trans 99.4 3.1E-11 6.8E-16 135.0 20.0 114 57-174 81-206 (870)
142 PRK14873 primosome assembly pr 99.3 2.9E-11 6.4E-16 135.7 18.2 139 68-214 163-311 (665)
143 PF04851 ResIII: Type III rest 99.3 1.5E-11 3.3E-16 117.9 13.6 147 49-207 2-183 (184)
144 KOG0385 Chromatin remodeling c 99.3 1.3E-10 2.9E-15 125.1 19.2 329 50-413 167-603 (971)
145 smart00490 HELICc helicase sup 99.3 2.9E-12 6.4E-17 105.0 5.3 71 309-397 11-81 (82)
146 PRK12902 secA preprotein trans 99.2 6.1E-10 1.3E-14 124.6 22.1 126 47-174 80-215 (939)
147 TIGR03117 cas_csf4 CRISPR-asso 99.2 1.8E-08 3.9E-13 112.0 30.9 137 259-408 454-616 (636)
148 COG4889 Predicted helicase [Ge 99.2 2.1E-11 4.6E-16 132.2 5.0 107 277-401 461-576 (1518)
149 PF02399 Herpes_ori_bp: Origin 99.1 6.3E-09 1.4E-13 115.4 23.6 302 63-413 47-392 (824)
150 PRK11747 dinG ATP-dependent DN 99.1 1.3E-08 2.9E-13 116.7 25.8 135 257-405 517-671 (697)
151 KOG0384 Chromodomain-helicase 99.0 8.4E-09 1.8E-13 116.9 17.8 354 48-438 368-837 (1373)
152 KOG0387 Transcription-coupled 99.0 4.7E-08 1E-12 106.4 22.7 116 275-413 545-662 (923)
153 COG1199 DinG Rad3-related DNA 99.0 5.9E-08 1.3E-12 112.1 22.7 157 258-426 462-638 (654)
154 PRK12901 secA preprotein trans 98.9 3.1E-08 6.6E-13 112.4 18.8 117 260-407 614-739 (1112)
155 KOG1000 Chromatin remodeling p 98.7 2E-06 4.3E-11 89.2 21.6 80 274-362 490-571 (689)
156 KOG0390 DNA repair protein, SN 98.7 6.8E-06 1.5E-10 92.1 25.4 108 279-412 597-710 (776)
157 COG0610 Type I site-specific r 98.5 3.4E-06 7.4E-11 99.6 19.4 132 66-206 274-413 (962)
158 KOG0392 SNF2 family DNA-depend 98.5 8.5E-06 1.8E-10 92.9 21.0 114 276-413 1340-1458(1549)
159 KOG1002 Nucleotide excision re 98.4 9.9E-06 2.1E-10 84.0 17.3 90 306-413 659-753 (791)
160 KOG0389 SNF2 family DNA-depend 98.3 5.7E-06 1.2E-10 90.5 13.6 115 275-413 776-892 (941)
161 KOG0952 DNA/RNA helicase MER3/ 98.3 2.2E-07 4.8E-12 104.2 3.0 229 47-293 909-1170(1230)
162 PF00448 SRP54: SRP54-type pro 98.3 8.6E-06 1.9E-10 78.3 12.3 129 66-212 2-131 (196)
163 PF00176 SNF2_N: SNF2 family N 98.2 3.6E-06 7.9E-11 87.4 9.6 133 63-206 23-172 (299)
164 COG1419 FlhF Flagellar GTP-bin 98.2 3.6E-05 7.7E-10 80.0 15.3 130 64-217 202-334 (407)
165 COG0653 SecA Preprotein transl 98.1 2.3E-05 5E-10 88.3 13.1 124 47-174 75-210 (822)
166 TIGR02768 TraA_Ti Ti-type conj 98.1 0.00086 1.9E-08 77.9 26.2 123 48-203 350-474 (744)
167 PF13604 AAA_30: AAA domain; P 98.1 1.2E-05 2.7E-10 77.5 9.3 121 51-204 2-129 (196)
168 PRK11889 flhF flagellar biosyn 98.1 9.2E-05 2E-09 77.1 14.7 125 66-212 242-368 (436)
169 PRK12723 flagellar biosynthesi 98.0 0.00011 2.3E-09 77.9 15.2 129 65-217 174-308 (388)
170 PF13401 AAA_22: AAA domain; P 98.0 4.1E-06 8.9E-11 75.2 3.7 114 63-203 2-123 (131)
171 PRK14722 flhF flagellar biosyn 98.0 7.1E-05 1.5E-09 78.5 13.1 126 63-212 135-263 (374)
172 PRK13889 conjugal transfer rel 97.9 0.0037 8.1E-08 73.7 25.3 126 47-205 343-470 (988)
173 PRK10536 hypothetical protein; 97.8 8.9E-05 1.9E-09 73.0 9.6 58 47-104 56-113 (262)
174 PRK05703 flhF flagellar biosyn 97.8 0.0005 1.1E-08 74.2 15.2 127 65-215 221-351 (424)
175 PRK12726 flagellar biosynthesi 97.8 0.0003 6.5E-09 73.1 12.5 132 63-216 204-337 (407)
176 PRK14974 cell division protein 97.8 0.00029 6.4E-09 73.2 12.5 121 66-207 141-265 (336)
177 TIGR01448 recD_rel helicase, p 97.7 0.00029 6.3E-09 81.4 13.5 125 47-205 320-452 (720)
178 PF06862 DUF1253: Protein of u 97.7 0.0026 5.6E-08 67.9 19.0 245 141-413 131-419 (442)
179 TIGR00604 rad3 DNA repair heli 97.7 0.00019 4.2E-09 83.3 11.4 194 198-399 443-663 (705)
180 KOG0386 Chromatin remodeling c 97.7 1.3E-05 2.9E-10 89.9 1.4 112 275-413 725-842 (1157)
181 cd00009 AAA The AAA+ (ATPases 97.7 0.00081 1.8E-08 61.1 13.0 47 55-102 7-55 (151)
182 TIGR00596 rad1 DNA repair prot 97.6 0.00026 5.7E-09 81.6 10.9 66 141-207 7-73 (814)
183 TIGR02760 TraI_TIGR conjugativ 97.6 0.02 4.3E-07 73.2 27.9 248 48-334 427-685 (1960)
184 PRK06526 transposase; Provisio 97.6 0.00032 6.8E-09 70.4 9.5 30 60-89 93-122 (254)
185 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00028 6E-09 70.6 8.6 124 48-175 75-208 (266)
186 PRK13826 Dtr system oriT relax 97.6 0.024 5.2E-07 67.6 25.8 125 48-205 379-505 (1102)
187 PRK12727 flagellar biosynthesi 97.6 0.00093 2E-08 72.5 13.1 130 62-215 347-478 (559)
188 PF13872 AAA_34: P-loop contai 97.6 0.00073 1.6E-08 67.8 11.4 139 65-206 62-220 (303)
189 PF09848 DUF2075: Uncharacteri 97.5 0.00047 1E-08 73.2 10.6 90 66-174 2-93 (352)
190 PF13245 AAA_19: Part of AAA d 97.5 0.00039 8.3E-09 55.5 7.3 56 59-115 4-62 (76)
191 PRK06731 flhF flagellar biosyn 97.5 0.0025 5.4E-08 64.2 14.3 129 64-214 74-204 (270)
192 KOG1803 DNA helicase [Replicat 97.4 0.0003 6.4E-09 75.7 7.5 57 51-108 186-243 (649)
193 TIGR01447 recD exodeoxyribonuc 97.4 0.0013 2.7E-08 74.0 12.7 135 53-203 148-293 (586)
194 PRK14721 flhF flagellar biosyn 97.4 0.0022 4.7E-08 68.6 13.8 128 64-215 190-320 (420)
195 PRK08181 transposase; Validate 97.4 0.001 2.2E-08 67.1 10.8 117 61-217 102-219 (269)
196 PRK12724 flagellar biosynthesi 97.4 0.0029 6.3E-08 67.0 14.4 124 65-213 223-351 (432)
197 PRK14723 flhF flagellar biosyn 97.4 0.0017 3.7E-08 73.9 13.3 126 65-214 185-313 (767)
198 smart00382 AAA ATPases associa 97.4 0.0011 2.3E-08 59.8 9.5 41 65-106 2-42 (148)
199 PF12340 DUF3638: Protein of u 97.3 0.0019 4.1E-08 62.5 11.1 130 42-175 15-183 (229)
200 PRK10875 recD exonuclease V su 97.3 0.0015 3.3E-08 73.5 12.1 136 53-204 155-300 (615)
201 PF13173 AAA_14: AAA domain 97.3 0.0025 5.4E-08 56.8 10.8 27 64-90 1-27 (128)
202 KOG4439 RNA polymerase II tran 97.3 0.0045 9.8E-08 67.7 14.3 91 308-413 769-862 (901)
203 PRK04296 thymidine kinase; Pro 97.3 0.0033 7.1E-08 60.3 12.0 37 65-102 2-38 (190)
204 PF13086 AAA_11: AAA domain; P 97.3 0.00097 2.1E-08 66.2 8.6 66 51-117 2-75 (236)
205 PF13307 Helicase_C_2: Helicas 97.2 0.00024 5.1E-09 66.7 3.2 119 275-402 8-142 (167)
206 COG3421 Uncharacterized protei 97.2 0.0092 2E-07 64.3 15.0 135 70-207 2-166 (812)
207 KOG2340 Uncharacterized conser 97.2 0.0057 1.2E-07 64.8 13.1 115 275-413 551-672 (698)
208 PRK10416 signal recognition pa 97.2 0.0043 9.4E-08 64.3 12.3 129 65-212 114-250 (318)
209 PF05970 PIF1: PIF1-like helic 97.2 0.0021 4.5E-08 68.5 10.1 58 52-111 3-66 (364)
210 PRK06995 flhF flagellar biosyn 97.1 0.0066 1.4E-07 66.0 13.7 127 64-214 255-384 (484)
211 TIGR03015 pepcterm_ATPase puta 97.1 0.0024 5.1E-08 65.2 9.9 25 65-89 43-67 (269)
212 PRK06835 DNA replication prote 97.1 0.0041 9E-08 64.7 11.2 37 64-101 182-218 (329)
213 PRK15483 type III restriction- 97.0 0.007 1.5E-07 70.4 13.2 45 335-397 501-545 (986)
214 PRK14956 DNA polymerase III su 97.0 0.0036 7.9E-08 67.6 10.3 32 58-89 30-64 (484)
215 TIGR00064 ftsY signal recognit 97.0 0.0093 2E-07 60.5 12.6 128 65-212 72-208 (272)
216 PRK07952 DNA replication prote 97.0 0.013 2.8E-07 58.2 13.0 115 66-217 100-215 (244)
217 PF05729 NACHT: NACHT domain 96.9 0.0035 7.5E-08 58.5 8.4 130 66-217 1-141 (166)
218 smart00489 DEXDc3 DEAD-like he 96.9 0.0022 4.8E-08 65.8 7.4 59 52-110 10-77 (289)
219 smart00488 DEXDc2 DEAD-like he 96.9 0.0022 4.8E-08 65.8 7.4 59 52-110 10-77 (289)
220 TIGR01425 SRP54_euk signal rec 96.9 0.0084 1.8E-07 64.2 11.7 131 66-216 101-236 (429)
221 PRK00771 signal recognition pa 96.9 0.014 3E-07 63.1 13.5 121 66-208 96-219 (437)
222 PRK08727 hypothetical protein; 96.9 0.0037 8E-08 62.1 8.4 36 65-101 41-76 (233)
223 TIGR03499 FlhF flagellar biosy 96.9 0.0049 1.1E-07 63.1 9.5 86 65-173 194-281 (282)
224 PRK08116 hypothetical protein; 96.9 0.026 5.6E-07 57.3 14.4 36 65-101 114-149 (268)
225 KOG0391 SNF2 family DNA-depend 96.8 0.007 1.5E-07 69.6 10.8 116 274-413 1274-1391(1958)
226 PRK09183 transposase/IS protei 96.8 0.0085 1.8E-07 60.5 10.5 39 62-101 99-137 (259)
227 PRK10867 signal recognition pa 96.8 0.012 2.7E-07 63.3 12.2 123 66-206 101-225 (433)
228 PF01695 IstB_IS21: IstB-like 96.8 0.0027 5.7E-08 60.2 6.3 120 59-218 41-161 (178)
229 COG1484 DnaC DNA replication p 96.8 0.019 4E-07 57.7 12.6 121 56-217 96-219 (254)
230 PRK07003 DNA polymerase III su 96.8 0.011 2.4E-07 66.8 11.6 50 152-203 107-156 (830)
231 PRK05642 DNA replication initi 96.7 0.0091 2E-07 59.4 9.8 35 66-101 46-80 (234)
232 PRK08691 DNA polymerase III su 96.7 0.013 2.9E-07 66.0 11.7 45 157-203 112-156 (709)
233 cd01120 RecA-like_NTPases RecA 96.7 0.0095 2E-07 55.2 9.2 39 68-107 2-40 (165)
234 PRK06893 DNA replication initi 96.7 0.0073 1.6E-07 59.9 8.6 37 64-101 38-74 (229)
235 PRK07994 DNA polymerase III su 96.7 0.0085 1.8E-07 67.6 10.0 49 152-202 107-155 (647)
236 cd03115 SRP The signal recogni 96.6 0.016 3.4E-07 54.8 10.4 124 67-209 2-127 (173)
237 PRK12377 putative replication 96.6 0.045 9.8E-07 54.6 13.9 36 65-101 101-136 (248)
238 PRK14960 DNA polymerase III su 96.6 0.013 2.8E-07 65.4 10.7 43 159-203 113-155 (702)
239 PRK09112 DNA polymerase III su 96.6 0.024 5.2E-07 59.7 12.4 140 55-203 32-178 (351)
240 KOG0989 Replication factor C, 96.6 0.0071 1.5E-07 60.3 7.7 42 162-205 127-168 (346)
241 PRK08084 DNA replication initi 96.6 0.0062 1.3E-07 60.6 7.4 37 64-101 44-80 (235)
242 PRK08939 primosomal protein Dn 96.6 0.043 9.4E-07 56.7 13.8 113 64-216 155-270 (306)
243 PRK00411 cdc6 cell division co 96.6 0.014 3E-07 63.2 10.7 24 66-89 56-79 (394)
244 PRK12323 DNA polymerase III su 96.5 0.012 2.7E-07 65.5 9.9 50 152-203 112-161 (700)
245 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.014 3E-07 57.7 9.5 27 63-89 36-62 (226)
246 PRK08903 DnaA regulatory inact 96.5 0.015 3.2E-07 57.7 9.6 38 63-101 40-77 (227)
247 PRK14949 DNA polymerase III su 96.5 0.015 3.4E-07 67.0 10.5 48 153-202 108-155 (944)
248 TIGR00959 ffh signal recogniti 96.4 0.031 6.7E-07 60.3 12.1 123 66-206 100-224 (428)
249 PF02562 PhoH: PhoH-like prote 96.4 0.0039 8.4E-08 59.9 4.7 55 50-104 4-59 (205)
250 PRK12402 replication factor C 96.4 0.026 5.6E-07 59.6 11.6 35 55-89 24-60 (337)
251 PF05621 TniB: Bacterial TniB 96.4 0.035 7.6E-07 56.1 11.6 118 66-206 62-189 (302)
252 PRK14961 DNA polymerase III su 96.4 0.014 3.1E-07 62.1 9.5 50 152-203 107-156 (363)
253 PRK00149 dnaA chromosomal repl 96.4 0.021 4.6E-07 62.8 10.9 36 66-101 149-185 (450)
254 PRK14958 DNA polymerase III su 96.3 0.023 5.1E-07 63.0 10.9 49 153-203 108-156 (509)
255 PRK06645 DNA polymerase III su 96.3 0.023 5E-07 62.6 10.7 48 152-201 116-163 (507)
256 PRK14964 DNA polymerase III su 96.3 0.028 6E-07 61.6 11.2 50 152-203 104-153 (491)
257 PRK06921 hypothetical protein; 96.3 0.064 1.4E-06 54.3 13.0 38 64-101 116-153 (266)
258 PF00004 AAA: ATPase family as 96.2 0.0059 1.3E-07 54.5 4.7 22 68-89 1-22 (132)
259 TIGR00362 DnaA chromosomal rep 96.2 0.024 5.2E-07 61.5 10.2 36 66-101 137-173 (405)
260 PRK14957 DNA polymerase III su 96.2 0.025 5.4E-07 62.8 10.3 51 151-203 106-156 (546)
261 TIGR02928 orc1/cdc6 family rep 96.2 0.02 4.3E-07 61.3 9.4 22 66-87 41-62 (365)
262 KOG2373 Predicted mitochondria 96.2 0.00096 2.1E-08 66.9 -0.8 53 56-109 264-319 (514)
263 KOG1802 RNA helicase nonsense 96.2 0.011 2.3E-07 64.5 6.9 73 51-125 411-483 (935)
264 TIGR02881 spore_V_K stage V sp 96.2 0.027 5.9E-07 57.1 9.7 22 65-86 42-63 (261)
265 COG1444 Predicted P-loop ATPas 96.2 0.29 6.3E-06 55.7 18.3 131 66-216 232-371 (758)
266 PTZ00112 origin recognition co 96.1 0.046 9.9E-07 62.6 11.8 20 67-86 783-802 (1164)
267 PF05127 Helicase_RecD: Helica 96.1 0.0039 8.5E-08 58.2 3.0 117 69-206 1-123 (177)
268 PRK14087 dnaA chromosomal repl 96.1 0.048 1E-06 59.6 11.8 37 66-102 142-179 (450)
269 cd03228 ABCC_MRP_Like The MRP 96.1 0.045 9.8E-07 51.5 10.1 126 62-202 25-151 (171)
270 cd03247 ABCC_cytochrome_bd The 96.1 0.032 6.9E-07 52.9 9.0 127 62-203 25-154 (178)
271 PF00580 UvrD-helicase: UvrD/R 96.1 0.012 2.7E-07 61.3 6.8 65 52-119 2-69 (315)
272 PRK12900 secA preprotein trans 96.1 0.0062 1.4E-07 70.4 4.7 105 66-174 152-268 (1025)
273 COG0552 FtsY Signal recognitio 96.0 0.074 1.6E-06 54.2 11.7 134 66-218 140-283 (340)
274 TIGR00678 holB DNA polymerase 96.0 0.049 1.1E-06 52.2 10.2 48 153-202 85-132 (188)
275 TIGR02782 TrbB_P P-type conjug 96.0 0.016 3.4E-07 59.8 7.1 52 55-106 122-174 (299)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.04 8.6E-07 50.2 9.0 94 62-193 23-116 (144)
277 TIGR00376 DNA helicase, putati 96.0 0.016 3.5E-07 66.1 7.8 66 50-117 157-223 (637)
278 PRK14962 DNA polymerase III su 96.0 0.032 7E-07 61.2 9.8 31 58-88 26-59 (472)
279 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.036 7.7E-07 51.3 8.6 27 62-88 22-48 (157)
280 PRK14963 DNA polymerase III su 95.9 0.043 9.3E-07 60.7 10.5 49 152-202 104-152 (504)
281 COG2804 PulE Type II secretory 95.9 0.034 7.4E-07 59.7 9.2 42 49-90 240-283 (500)
282 PRK14959 DNA polymerase III su 95.9 0.047 1E-06 61.2 10.7 33 56-88 26-61 (624)
283 PRK09111 DNA polymerase III su 95.9 0.059 1.3E-06 60.8 11.5 50 152-203 120-169 (598)
284 PF00308 Bac_DnaA: Bacterial d 95.9 0.023 4.9E-07 55.9 7.3 36 66-101 35-71 (219)
285 PRK07471 DNA polymerase III su 95.8 0.062 1.3E-06 57.0 10.7 63 142-206 119-181 (365)
286 PF13177 DNA_pol3_delta2: DNA 95.8 0.044 9.6E-07 51.0 8.6 61 144-206 82-142 (162)
287 PRK05896 DNA polymerase III su 95.8 0.065 1.4E-06 59.8 11.1 52 150-203 105-156 (605)
288 PRK14969 DNA polymerase III su 95.8 0.064 1.4E-06 59.9 11.1 50 152-203 107-156 (527)
289 PRK14955 DNA polymerase III su 95.8 0.053 1.2E-06 58.5 10.2 32 57-88 27-61 (397)
290 KOG0391 SNF2 family DNA-depend 95.8 0.035 7.5E-07 64.2 8.8 149 51-206 616-775 (1958)
291 PHA03333 putative ATPase subun 95.8 0.33 7.1E-06 54.4 16.1 150 56-217 179-343 (752)
292 PRK14086 dnaA chromosomal repl 95.8 0.059 1.3E-06 60.2 10.5 36 66-101 315-351 (617)
293 PRK14952 DNA polymerase III su 95.8 0.052 1.1E-06 61.0 10.2 50 152-203 106-155 (584)
294 PRK14950 DNA polymerase III su 95.8 0.054 1.2E-06 61.5 10.6 48 153-202 109-156 (585)
295 TIGR00604 rad3 DNA repair heli 95.7 0.019 4.1E-07 66.9 7.1 59 51-109 11-75 (705)
296 COG3267 ExeA Type II secretory 95.7 0.081 1.8E-06 51.7 10.0 62 57-120 42-104 (269)
297 PRK14951 DNA polymerase III su 95.7 0.036 7.7E-07 62.5 8.8 50 152-203 112-161 (618)
298 COG1474 CDC6 Cdc6-related prot 95.7 0.088 1.9E-06 55.8 11.3 22 66-87 43-64 (366)
299 PRK13851 type IV secretion sys 95.7 0.02 4.3E-07 60.0 6.3 47 58-106 155-201 (344)
300 PRK14088 dnaA chromosomal repl 95.7 0.11 2.3E-06 56.9 12.2 36 66-101 131-167 (440)
301 PRK14948 DNA polymerase III su 95.7 0.054 1.2E-06 61.6 10.2 50 150-201 107-156 (620)
302 PRK07764 DNA polymerase III su 95.7 0.058 1.3E-06 63.1 10.6 47 155-203 111-157 (824)
303 PRK14965 DNA polymerase III su 95.7 0.077 1.7E-06 60.0 11.3 51 151-203 106-156 (576)
304 KOG2228 Origin recognition com 95.7 0.24 5.1E-06 50.4 13.2 129 64-209 48-184 (408)
305 PRK13833 conjugal transfer pro 95.7 0.026 5.6E-07 58.5 6.9 51 56-106 135-186 (323)
306 PF00437 T2SE: Type II/IV secr 95.6 0.017 3.8E-07 58.9 5.5 47 59-106 121-167 (270)
307 PRK06067 flagellar accessory p 95.6 0.057 1.2E-06 53.7 8.9 43 62-105 22-64 (234)
308 PRK08451 DNA polymerase III su 95.6 0.09 1.9E-06 58.2 11.1 43 159-203 112-154 (535)
309 PF01637 Arch_ATPase: Archaeal 95.6 0.048 1E-06 53.9 8.4 34 56-89 9-44 (234)
310 PRK13894 conjugal transfer ATP 95.5 0.027 5.9E-07 58.4 6.6 51 56-106 139-190 (319)
311 cd03216 ABC_Carb_Monos_I This 95.5 0.065 1.4E-06 50.0 8.5 126 62-215 23-149 (163)
312 KOG1805 DNA replication helica 95.5 0.013 2.8E-07 66.7 4.3 58 53-112 673-730 (1100)
313 cd03246 ABCC_Protease_Secretio 95.5 0.061 1.3E-06 50.7 8.4 28 62-89 25-52 (173)
314 PHA02544 44 clamp loader, smal 95.5 0.12 2.6E-06 54.1 11.4 33 56-88 31-66 (316)
315 TIGR02868 CydC thiol reductant 95.5 0.073 1.6E-06 60.1 10.5 28 62-89 358-385 (529)
316 cd03223 ABCD_peroxisomal_ALDP 95.4 0.063 1.4E-06 50.2 8.2 28 62-89 24-51 (166)
317 cd03230 ABC_DR_subfamily_A Thi 95.4 0.065 1.4E-06 50.5 8.4 136 62-214 23-161 (173)
318 KOG0388 SNF2 family DNA-depend 95.4 0.098 2.1E-06 57.6 10.4 116 274-413 1042-1158(1185)
319 PRK14712 conjugal transfer nic 95.4 0.12 2.6E-06 64.0 12.3 123 50-205 835-967 (1623)
320 PLN03025 replication factor C 95.4 0.15 3.2E-06 53.4 11.6 23 66-88 35-57 (319)
321 COG2256 MGS1 ATPase related to 95.4 0.072 1.6E-06 55.4 8.8 29 60-88 41-71 (436)
322 TIGR02880 cbbX_cfxQ probable R 95.4 0.1 2.2E-06 53.5 10.1 19 66-84 59-77 (284)
323 PRK05707 DNA polymerase III su 95.3 0.11 2.4E-06 54.2 10.4 58 144-203 86-143 (328)
324 PTZ00293 thymidine kinase; Pro 95.3 0.074 1.6E-06 51.2 8.3 39 64-103 3-41 (211)
325 PRK12422 chromosomal replicati 95.3 0.091 2E-06 57.3 10.0 35 66-101 142-176 (445)
326 cd01131 PilT Pilus retraction 95.3 0.025 5.5E-07 54.6 5.1 39 66-104 2-40 (198)
327 PRK13900 type IV secretion sys 95.3 0.034 7.3E-07 58.1 6.4 47 58-106 153-199 (332)
328 CHL00181 cbbX CbbX; Provisiona 95.3 0.23 5E-06 50.9 12.4 23 65-87 59-81 (287)
329 COG0541 Ffh Signal recognition 95.3 0.21 4.6E-06 52.7 11.9 137 66-219 101-239 (451)
330 cd03214 ABC_Iron-Siderophores_ 95.2 0.04 8.6E-07 52.4 6.2 27 62-88 22-48 (180)
331 PRK06620 hypothetical protein; 95.2 0.077 1.7E-06 51.8 8.2 20 66-85 45-64 (214)
332 cd01130 VirB11-like_ATPase Typ 95.2 0.045 9.7E-07 52.3 6.5 32 57-88 17-48 (186)
333 PRK08533 flagellar accessory p 95.2 0.11 2.4E-06 51.4 9.5 41 62-103 21-61 (230)
334 PRK07940 DNA polymerase III su 95.1 0.18 3.9E-06 54.1 11.2 52 151-205 104-155 (394)
335 PF05496 RuvB_N: Holliday junc 95.1 0.07 1.5E-06 51.6 7.1 24 66-89 51-74 (233)
336 PHA02533 17 large terminase pr 95.1 0.66 1.4E-05 51.8 15.9 156 47-215 56-219 (534)
337 PF13555 AAA_29: P-loop contai 95.0 0.029 6.2E-07 42.4 3.6 22 65-86 23-44 (62)
338 PRK14954 DNA polymerase III su 95.0 0.15 3.2E-06 57.8 10.9 50 152-203 115-164 (620)
339 COG3587 Restriction endonuclea 95.0 0.069 1.5E-06 60.2 8.0 52 335-404 483-537 (985)
340 TIGR01420 pilT_fam pilus retra 95.0 0.039 8.4E-07 58.3 5.7 43 64-106 121-163 (343)
341 cd03238 ABC_UvrA The excision 94.9 0.16 3.5E-06 47.9 9.3 25 62-86 18-42 (176)
342 PRK13709 conjugal transfer nic 94.9 0.18 3.9E-06 63.3 12.1 124 49-205 966-1099(1747)
343 PRK09087 hypothetical protein; 94.9 0.22 4.8E-06 49.1 10.6 22 65-86 44-65 (226)
344 COG2909 MalT ATP-dependent tra 94.9 0.076 1.6E-06 60.3 8.0 142 55-206 24-170 (894)
345 COG1875 NYN ribonuclease and A 94.9 0.14 3.1E-06 52.5 9.1 37 47-83 225-263 (436)
346 PRK00440 rfc replication facto 94.9 0.38 8.3E-06 50.2 13.1 23 66-88 39-61 (319)
347 cd03229 ABC_Class3 This class 94.8 0.11 2.3E-06 49.3 7.9 118 62-192 23-145 (178)
348 PRK04195 replication factor C 94.8 0.31 6.7E-06 54.2 12.7 25 65-89 39-63 (482)
349 PRK05563 DNA polymerase III su 94.8 0.12 2.7E-06 58.1 9.5 49 151-201 106-154 (559)
350 TIGR02397 dnaX_nterm DNA polym 94.8 0.2 4.4E-06 53.3 10.9 50 151-202 104-153 (355)
351 TIGR02974 phageshock_pspF psp 94.8 0.26 5.6E-06 51.6 11.4 37 52-89 9-45 (329)
352 COG2805 PilT Tfp pilus assembl 94.8 0.054 1.2E-06 54.1 5.6 46 64-109 124-169 (353)
353 COG4962 CpaF Flp pilus assembl 94.7 0.1 2.2E-06 53.4 7.7 47 58-106 166-212 (355)
354 PRK06647 DNA polymerase III su 94.7 0.17 3.6E-06 56.9 10.0 32 57-88 27-61 (563)
355 cd03222 ABC_RNaseL_inhibitor T 94.6 0.58 1.3E-05 44.2 12.2 28 61-88 21-48 (177)
356 COG0553 HepA Superfamily II DN 94.6 0.097 2.1E-06 63.0 8.7 112 278-413 713-826 (866)
357 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.06 1.3E-06 56.9 6.0 48 58-105 126-176 (358)
358 PRK07399 DNA polymerase III su 94.6 0.32 6.9E-06 50.6 11.2 61 142-205 102-162 (314)
359 TIGR02688 conserved hypothetic 94.5 0.13 2.8E-06 54.6 8.0 49 38-86 159-230 (449)
360 COG0470 HolB ATPase involved i 94.4 0.18 4E-06 52.7 9.4 57 145-203 90-146 (325)
361 PRK07133 DNA polymerase III su 94.4 0.25 5.3E-06 56.5 10.7 52 150-203 104-155 (725)
362 TIGR02760 TraI_TIGR conjugativ 94.4 0.16 3.6E-06 65.2 10.3 124 48-204 1017-1148(1960)
363 TIGR02788 VirB11 P-type DNA tr 94.4 0.075 1.6E-06 55.2 6.2 39 60-100 139-177 (308)
364 PF01443 Viral_helicase1: Vira 94.4 0.041 8.8E-07 54.7 4.1 22 68-89 1-22 (234)
365 cd01129 PulE-GspE PulE/GspE Th 94.4 0.089 1.9E-06 53.2 6.5 47 58-105 72-119 (264)
366 PRK14970 DNA polymerase III su 94.4 0.18 4E-06 53.9 9.3 32 56-87 27-61 (367)
367 PRK14953 DNA polymerase III su 94.4 0.16 3.6E-06 56.0 9.0 49 151-201 106-154 (486)
368 cd01393 recA_like RecA is a b 94.3 0.12 2.6E-06 51.1 7.2 43 62-104 16-63 (226)
369 TIGR02012 tigrfam_recA protein 94.3 0.14 3E-06 52.9 7.8 46 61-107 51-96 (321)
370 cd03213 ABCG_EPDR ABCG transpo 94.3 0.15 3.2E-06 49.2 7.6 28 62-89 32-59 (194)
371 KOG0058 Peptide exporter, ABC 94.2 0.06 1.3E-06 60.1 5.0 31 59-89 488-518 (716)
372 COG1132 MdlB ABC-type multidru 94.2 0.15 3.2E-06 58.1 8.4 29 62-90 352-380 (567)
373 TIGR03375 type_I_sec_LssB type 94.2 0.097 2.1E-06 61.2 7.1 28 62-89 488-515 (694)
374 PHA00729 NTP-binding motif con 94.1 0.15 3.3E-06 49.6 7.1 30 58-87 8-39 (226)
375 COG2812 DnaX DNA polymerase II 94.1 0.057 1.2E-06 59.1 4.6 51 151-203 106-156 (515)
376 cd00544 CobU Adenosylcobinamid 94.1 0.31 6.8E-06 45.6 8.9 45 68-117 2-46 (169)
377 PRK05973 replicative DNA helic 94.0 0.06 1.3E-06 53.1 4.2 44 58-102 57-100 (237)
378 PRK14971 DNA polymerase III su 94.0 0.27 5.8E-06 56.0 10.0 50 152-203 109-158 (614)
379 TIGR02858 spore_III_AA stage I 94.0 0.65 1.4E-05 47.0 11.7 24 66-89 112-135 (270)
380 PRK13342 recombination factor 94.0 0.25 5.3E-06 53.8 9.4 23 66-88 37-59 (413)
381 PF03237 Terminase_6: Terminas 94.0 0.64 1.4E-05 49.6 12.7 140 69-216 1-148 (384)
382 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.11 2.3E-06 50.6 6.0 27 62-88 31-57 (207)
383 PRK09354 recA recombinase A; P 94.0 0.18 3.9E-06 52.7 7.8 56 62-123 57-112 (349)
384 PHA03368 DNA packaging termina 94.0 0.85 1.8E-05 51.1 13.2 142 64-218 253-402 (738)
385 PRK08769 DNA polymerase III su 93.9 0.37 8E-06 50.0 10.0 60 144-205 93-152 (319)
386 PRK11823 DNA repair protein Ra 93.9 0.12 2.6E-06 56.5 6.8 41 62-103 77-117 (446)
387 cd03215 ABC_Carb_Monos_II This 93.9 0.24 5.3E-06 47.0 8.1 28 62-89 23-50 (182)
388 TIGR03345 VI_ClpV1 type VI sec 93.9 0.39 8.5E-06 56.9 11.4 19 67-85 598-616 (852)
389 TIGR02525 plasmid_TraJ plasmid 93.9 0.12 2.6E-06 54.8 6.4 44 63-106 147-191 (372)
390 COG4987 CydC ABC-type transpor 93.8 0.19 4.2E-06 54.2 7.8 29 62-90 361-389 (573)
391 cd03239 ABC_SMC_head The struc 93.8 0.4 8.7E-06 45.4 9.2 41 163-204 115-156 (178)
392 cd01121 Sms Sms (bacterial rad 93.8 0.14 3.1E-06 54.4 6.8 41 62-103 79-119 (372)
393 TIGR01547 phage_term_2 phage t 93.7 0.34 7.4E-06 52.4 9.9 131 66-207 2-141 (396)
394 TIGR02655 circ_KaiC circadian 93.7 0.14 3.1E-06 56.8 7.0 94 62-171 260-360 (484)
395 cd00983 recA RecA is a bacter 93.7 0.19 4E-06 52.1 7.3 46 61-107 51-96 (325)
396 KOG0780 Signal recognition par 93.7 0.53 1.1E-05 48.7 10.2 135 66-217 102-238 (483)
397 PRK11054 helD DNA helicase IV; 93.6 0.33 7.1E-06 56.0 9.9 87 47-156 193-282 (684)
398 KOG2543 Origin recognition com 93.6 0.49 1.1E-05 49.0 9.9 43 47-89 6-54 (438)
399 COG1435 Tdk Thymidine kinase [ 93.6 0.51 1.1E-05 44.4 9.2 89 65-175 4-93 (201)
400 cd00984 DnaB_C DnaB helicase C 93.6 0.064 1.4E-06 53.6 3.7 45 58-102 6-50 (242)
401 PRK04841 transcriptional regul 93.6 0.32 7E-06 58.9 10.4 27 62-88 29-55 (903)
402 PF00931 NB-ARC: NB-ARC domain 93.6 0.2 4.3E-06 51.5 7.4 68 55-122 5-77 (287)
403 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.082 1.8E-06 52.7 4.3 41 62-103 18-58 (237)
404 COG1136 SalX ABC-type antimicr 93.5 0.074 1.6E-06 51.7 3.8 28 62-89 28-55 (226)
405 COG0542 clpA ATP-binding subun 93.5 0.48 1E-05 54.3 10.7 83 66-175 522-604 (786)
406 COG1119 ModF ABC-type molybden 93.5 0.32 7E-06 47.4 8.0 30 62-91 54-83 (257)
407 PRK11174 cysteine/glutathione 93.5 0.33 7.1E-06 55.6 9.7 28 62-89 373-400 (588)
408 COG1126 GlnQ ABC-type polar am 93.4 0.082 1.8E-06 50.4 3.8 29 61-89 24-52 (240)
409 PRK06305 DNA polymerase III su 93.4 0.43 9.3E-06 52.3 10.0 32 57-88 28-62 (451)
410 COG3973 Superfamily I DNA and 93.4 0.29 6.2E-06 53.5 8.2 68 51-121 213-285 (747)
411 PF02367 UPF0079: Uncharacteri 93.4 0.15 3.2E-06 44.7 5.1 48 55-106 5-52 (123)
412 COG5008 PilU Tfp pilus assembl 93.3 0.1 2.2E-06 51.0 4.4 43 62-104 124-166 (375)
413 cd01124 KaiC KaiC is a circadi 93.3 0.089 1.9E-06 50.2 4.1 35 68-103 2-36 (187)
414 COG1222 RPT1 ATP-dependent 26S 93.3 0.73 1.6E-05 47.4 10.4 23 64-87 184-206 (406)
415 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.3 0.24 5.2E-06 49.4 7.2 27 62-88 26-52 (238)
416 COG0593 DnaA ATPase involved i 93.3 0.52 1.1E-05 50.1 9.9 24 65-88 113-136 (408)
417 PF06745 KaiC: KaiC; InterPro 93.3 0.062 1.3E-06 53.2 2.9 41 63-103 17-57 (226)
418 cd03289 ABCC_CFTR2 The CFTR su 93.2 0.28 6E-06 50.0 7.7 28 62-89 27-54 (275)
419 COG1121 ZnuC ABC-type Mn/Zn tr 93.2 0.13 2.8E-06 51.0 4.9 68 148-217 141-208 (254)
420 COG2255 RuvB Holliday junction 93.2 0.42 9.2E-06 47.5 8.3 24 66-89 53-76 (332)
421 cd03233 ABC_PDR_domain1 The pl 93.1 0.44 9.6E-06 46.1 8.6 27 62-88 30-56 (202)
422 cd03248 ABCC_TAP TAP, the Tran 93.1 0.31 6.8E-06 48.1 7.7 27 62-88 37-63 (226)
423 TIGR01817 nifA Nif-specific re 93.1 0.78 1.7E-05 51.7 11.7 47 53-100 207-253 (534)
424 PRK10917 ATP-dependent DNA hel 93.0 0.26 5.6E-06 57.2 7.9 79 275-358 309-388 (681)
425 cd03226 ABC_cobalt_CbiO_domain 93.0 0.27 5.9E-06 47.7 6.9 27 62-88 23-49 (205)
426 PRK08058 DNA polymerase III su 92.9 0.84 1.8E-05 47.9 10.9 50 152-203 98-147 (329)
427 cd01128 rho_factor Transcripti 92.9 0.13 2.8E-06 51.4 4.5 28 62-89 13-40 (249)
428 cd03254 ABCC_Glucan_exporter_l 92.9 0.27 5.9E-06 48.6 6.9 27 62-88 26-52 (229)
429 PHA00149 DNA encapsidation pro 92.9 1.3 2.9E-05 44.0 11.2 144 68-216 20-171 (331)
430 COG1122 CbiO ABC-type cobalt t 92.8 0.71 1.5E-05 45.7 9.5 53 163-216 155-207 (235)
431 PRK15177 Vi polysaccharide exp 92.7 0.16 3.5E-06 49.6 4.9 27 62-88 10-36 (213)
432 PF12846 AAA_10: AAA-like doma 92.7 0.11 2.4E-06 53.7 4.0 35 65-100 1-35 (304)
433 PRK05580 primosome assembly pr 92.7 0.18 3.9E-06 58.3 6.1 74 276-358 190-263 (679)
434 TIGR02857 CydD thiol reductant 92.7 0.13 2.8E-06 58.1 4.8 28 62-89 345-372 (529)
435 COG4626 Phage terminase-like p 92.7 1 2.2E-05 49.2 11.2 148 48-205 59-224 (546)
436 COG1110 Reverse gyrase [DNA re 92.7 0.29 6.2E-06 56.7 7.3 74 269-345 118-191 (1187)
437 KOG1132 Helicase of the DEAD s 92.7 0.25 5.5E-06 56.2 6.8 123 52-174 27-257 (945)
438 TIGR03878 thermo_KaiC_2 KaiC d 92.7 0.13 2.8E-06 52.0 4.3 39 63-102 34-72 (259)
439 TIGR02640 gas_vesic_GvpN gas v 92.7 0.17 3.7E-06 51.2 5.2 37 51-87 7-43 (262)
440 PRK06904 replicative DNA helic 92.6 0.35 7.6E-06 53.3 7.9 68 52-121 208-276 (472)
441 TIGR03771 anch_rpt_ABC anchore 92.6 1 2.2E-05 44.4 10.5 27 62-88 3-29 (223)
442 PLN03232 ABC transporter C fam 92.6 0.29 6.4E-06 62.0 8.2 28 62-89 1259-1286(1495)
443 PRK05564 DNA polymerase III su 92.6 0.63 1.4E-05 48.5 9.5 50 152-203 81-130 (313)
444 PRK10436 hypothetical protein; 92.6 0.25 5.4E-06 54.0 6.6 51 53-104 204-256 (462)
445 PRK13695 putative NTPase; Prov 92.6 1.7 3.8E-05 40.8 11.7 22 67-88 2-23 (174)
446 PRK11608 pspF phage shock prot 92.6 1 2.2E-05 47.2 11.0 36 51-86 15-50 (326)
447 cd01122 GP4d_helicase GP4d_hel 92.6 0.14 3.1E-06 52.1 4.5 43 60-102 25-67 (271)
448 COG0396 sufC Cysteine desulfur 92.6 0.15 3.3E-06 49.0 4.3 51 162-216 160-211 (251)
449 PF13207 AAA_17: AAA domain; P 92.5 0.11 2.3E-06 45.6 3.1 22 67-88 1-22 (121)
450 PRK09544 znuC high-affinity zi 92.5 0.13 2.9E-06 51.7 4.1 27 62-88 27-53 (251)
451 PRK15429 formate hydrogenlyase 92.5 0.54 1.2E-05 54.8 9.7 44 57-101 391-434 (686)
452 PRK11176 lipid transporter ATP 92.5 0.18 3.9E-06 57.6 5.7 28 62-89 366-393 (582)
453 COG0467 RAD55 RecA-superfamily 92.5 0.15 3.2E-06 51.7 4.4 40 62-102 20-59 (260)
454 PRK13764 ATPase; Provisional 92.5 0.18 4E-06 56.5 5.5 47 58-106 249-297 (602)
455 TIGR01189 ccmA heme ABC export 92.5 0.21 4.5E-06 48.2 5.3 27 62-88 23-49 (198)
456 PRK13543 cytochrome c biogenes 92.4 0.23 4.9E-06 48.6 5.6 27 62-88 34-60 (214)
457 PRK13657 cyclic beta-1,2-gluca 92.4 0.17 3.8E-06 57.8 5.5 42 161-203 486-527 (588)
458 PRK03992 proteasome-activating 92.4 0.62 1.3E-05 50.1 9.3 24 65-88 165-188 (389)
459 COG2204 AtoC Response regulato 92.4 0.88 1.9E-05 49.2 10.3 108 54-191 153-260 (464)
460 TIGR03346 chaperone_ClpB ATP-d 92.4 0.41 8.9E-06 57.0 8.6 25 64-88 193-217 (852)
461 cd03300 ABC_PotA_N PotA is an 92.3 0.14 3E-06 50.9 4.0 28 62-89 23-50 (232)
462 TIGR00595 priA primosomal prot 92.3 0.19 4.1E-06 55.9 5.4 75 275-358 24-98 (505)
463 PF02456 Adeno_IVa2: Adenoviru 92.3 0.18 3.9E-06 50.5 4.5 41 67-107 89-130 (369)
464 cd03251 ABCC_MsbA MsbA is an e 92.3 0.21 4.5E-06 49.6 5.2 27 62-88 25-51 (234)
465 cd03232 ABC_PDR_domain2 The pl 92.3 0.5 1.1E-05 45.3 7.7 26 62-87 30-55 (192)
466 TIGR00767 rho transcription te 92.3 0.15 3.2E-06 54.0 4.2 27 62-88 165-191 (415)
467 TIGR03411 urea_trans_UrtD urea 92.3 1 2.2E-05 44.9 10.3 27 62-88 25-51 (242)
468 PRK08699 DNA polymerase III su 92.3 1.3 2.7E-05 46.4 11.1 58 144-203 93-150 (325)
469 TIGR01074 rep ATP-dependent DN 92.3 0.43 9.3E-06 55.5 8.5 103 52-174 3-111 (664)
470 PLN03130 ABC transporter C fam 92.3 0.3 6.5E-06 62.2 7.6 29 61-89 1261-1289(1622)
471 smart00491 HELICc2 helicase su 92.3 0.18 3.8E-06 45.7 4.2 75 325-399 34-128 (142)
472 PRK10865 protein disaggregatio 92.3 1.1 2.5E-05 53.2 12.0 20 67-86 600-619 (857)
473 cd03244 ABCC_MRP_domain2 Domai 92.2 0.14 3E-06 50.5 3.8 27 62-88 27-53 (221)
474 PF05876 Terminase_GpA: Phage 92.2 0.25 5.5E-06 55.6 6.2 161 50-216 16-192 (557)
475 PRK06871 DNA polymerase III su 92.2 0.5 1.1E-05 49.1 7.9 60 144-205 87-146 (325)
476 PRK10919 ATP-dependent DNA hel 92.2 0.53 1.1E-05 54.5 9.0 104 51-174 3-112 (672)
477 PRK13538 cytochrome c biogenes 92.2 0.21 4.6E-06 48.5 5.0 27 62-88 24-50 (204)
478 COG0630 VirB11 Type IV secreto 92.2 0.23 5.1E-06 51.4 5.5 49 56-106 134-182 (312)
479 PF10443 RNA12: RNA12 protein; 92.2 0.42 9E-06 50.8 7.3 53 165-217 149-205 (431)
480 TIGR03819 heli_sec_ATPase heli 92.1 0.28 6.1E-06 51.5 6.1 50 55-106 167-217 (340)
481 PRK14873 primosome assembly pr 92.1 0.27 6E-06 56.2 6.4 76 275-358 187-262 (665)
482 PRK04301 radA DNA repair and r 92.1 0.5 1.1E-05 49.4 8.0 43 62-104 99-146 (317)
483 smart00492 HELICc3 helicase su 92.1 0.29 6.2E-06 44.3 5.3 80 320-399 32-127 (141)
484 PRK11160 cysteine/glutathione 92.1 0.2 4.3E-06 57.1 5.4 28 62-89 363-390 (574)
485 TIGR03522 GldA_ABC_ATP gliding 92.0 0.22 4.7E-06 51.7 5.1 27 62-88 25-51 (301)
486 TIGR00957 MRP_assoc_pro multi 92.0 0.38 8.1E-06 61.2 8.0 28 62-89 1309-1336(1522)
487 TIGR02639 ClpA ATP-dependent C 91.9 0.91 2E-05 53.2 10.6 24 65-88 203-226 (731)
488 COG3839 MalK ABC-type sugar tr 91.9 0.15 3.3E-06 52.8 3.7 27 62-88 26-52 (338)
489 PRK10789 putative multidrug tr 91.9 0.3 6.6E-06 55.6 6.5 28 62-89 338-365 (569)
490 PHA03372 DNA packaging termina 91.8 2.2 4.9E-05 47.2 12.5 147 58-217 196-348 (668)
491 TIGR02538 type_IV_pilB type IV 91.8 0.35 7.6E-06 54.6 6.8 52 51-103 300-353 (564)
492 KOG0056 Heavy metal exporter H 91.7 0.57 1.2E-05 50.0 7.6 30 62-91 561-590 (790)
493 PF13671 AAA_33: AAA domain; P 91.7 0.17 3.7E-06 45.8 3.5 23 67-89 1-23 (143)
494 PRK06964 DNA polymerase III su 91.7 0.57 1.2E-05 49.1 7.7 61 143-205 111-171 (342)
495 PRK14250 phosphate ABC transpo 91.6 0.35 7.6E-06 48.3 6.0 27 62-88 26-52 (241)
496 TIGR02533 type_II_gspE general 91.6 0.35 7.5E-06 53.5 6.3 54 50-104 225-280 (486)
497 cd03252 ABCC_Hemolysin The ABC 91.6 0.37 8E-06 48.0 6.1 27 62-88 25-51 (237)
498 TIGR02204 MsbA_rel ABC transpo 91.5 0.6 1.3E-05 53.3 8.5 28 62-89 363-390 (576)
499 PF00158 Sigma54_activat: Sigm 91.5 0.48 1E-05 44.3 6.3 50 53-103 10-59 (168)
500 COG3598 RepA RecA-family ATPas 91.5 0.92 2E-05 45.9 8.4 106 62-174 86-204 (402)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-140 Score=1102.77 Aligned_cols=636 Identities=58% Similarity=0.976 Sum_probs=612.6
Q ss_pred CCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHH
Q 005436 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA 112 (697)
Q Consensus 33 ~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~ 112 (697)
.+.......+..+|..|||++++++|++++++++++||.|+||||||||+||++.+.++...++ |.|+|||++|+.+++
T Consensus 34 ~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 34 SYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLA 112 (674)
T ss_pred ccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHH
Confidence 4444555679999999999999999999999999999999999999999999999999988887 999999999999999
Q ss_pred HHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 005436 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (697)
Q Consensus 113 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (697)
+|++.+++..+|..|||++||++.++. .++|.|+|+|+|++++..+|.|++|++|||||||||++++|+++++++++.+
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~-~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSK-DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILK 191 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCC-ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHh
Q 005436 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (697)
Q Consensus 193 ~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (697)
.++++|+|+||||+|.+.|++||++++ ++.++||.|||+++|...+..||+++.+..+.++|.
T Consensus 192 ~R~~LklIimSATlda~kfS~yF~~a~-----------------i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~ 254 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDAEKFSEYFNNAP-----------------ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHL 254 (674)
T ss_pred cCCCceEEEEeeeecHHHHHHHhcCCc-----------------eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHc
Confidence 999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC
Q 005436 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (697)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip 352 (697)
.++.|+||||++++++++.+++.|.+.......+.+. .+.++||.|+.++|.+||+..+.|.+|||+|||++|++++||
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEec
Confidence 9999999999999999999999999987666655555 789999999999999999999999999999999999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHH
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCV 432 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~ 432 (697)
+|.||||+|+.|++.|||..+++.|...|+|++++.||+|||||.+||+|||||++++|+. |+..+.|||.|++|..++
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~v 412 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAV 412 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 999999999999999999
Q ss_pred HHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHH
Q 005436 433 IQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (697)
Q Consensus 433 L~l~~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i 512 (697)
|++|++|++|+..|+|+|||+.+++..|++.|+.+||||++|.+|.|+|+.|+.+|++|.++|+++.+..+||.+|+++|
T Consensus 413 L~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i 492 (674)
T KOG0922|consen 413 LQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTI 492 (674)
T ss_pred HHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhh
Confidence 99999999999999999999999999999999999999999999966999999999999999999999999999999999
Q ss_pred HHHhccccccccCcchhHH-HHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 005436 513 SAVLSIQSIWVSGRGAQKE-LDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQ 591 (697)
Q Consensus 513 ~a~ls~~~~f~~~~~~~~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~ 591 (697)
+|+||++++|.+|.+.+.+ ++..|.+|...+|||+++|++|+.|.+.+...+||.+||+|++.|+++.++|+||.++++
T Consensus 493 ~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~ 572 (674)
T KOG0922|consen 493 AAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILD 572 (674)
T ss_pred eeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcccCCCcchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccchhhccc
Q 005436 592 RIGIVMKSCESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRN 671 (697)
Q Consensus 592 ~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~~~ir~ 671 (697)
+.+++..+|..|.+.+++|||+|||.|+|+++ .+++ |+++.++++|+|||||+||.++|+||+|+|++.|+|.|||+
T Consensus 573 ~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~--~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~ 649 (674)
T KOG0922|consen 573 KFGLPVSSCGGDMEKIRKCLCAGFFRNVAERD--YQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRN 649 (674)
T ss_pred HcCCCccCCCCCHHHHHHHHHHHHHHHHHHhh--cCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhh
Confidence 99999988999999999999999999999987 2455 99999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHhHccccccccc
Q 005436 672 VISIDPSWLLEVAPHFYQQHR 692 (697)
Q Consensus 672 vt~i~~~wl~~~~~~~~~~~~ 692 (697)
||.|+++||.+++|++++...
T Consensus 650 Vt~i~~~wL~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 650 VTAIDPEWLLELAPHFFKQSD 670 (674)
T ss_pred eeecCHHHHHHhCchHhhccc
Confidence 999999999999999987654
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-135 Score=1045.66 Aligned_cols=632 Identities=51% Similarity=0.879 Sum_probs=614.4
Q ss_pred hhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 40 ~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
..+...|+.||+|.++++++.++..++++||.|.||||||||+||++.+.++..+++.|.|+|||++++.+++.|+++++
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceE
Q 005436 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 120 ~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~i 199 (697)
|+++|..+||++||+++++. .+.|.|+|+|+|++.++.+|.|..|++|||||||||.+++|++.++++.+.+.++++|+
T Consensus 335 gvkLG~eVGYsIRFEdcTSe-kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSE-KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred CcccccccceEEEeccccCc-ceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcE
Q 005436 200 IISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (697)
Q Consensus 200 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 279 (697)
+++|||+|++.|+.||++.+ ++.++|+.|||+++|...+..||++.++..++++|...+.|+|
T Consensus 414 lIsSAT~DAekFS~fFDdap-----------------IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 414 LISSATMDAEKFSAFFDDAP-----------------IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred EeeccccCHHHHHHhccCCc-----------------EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccE
Confidence 99999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEe
Q 005436 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (697)
Q Consensus 280 LVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId 359 (697)
|||+++.++++.+.+.|.+....++.....+.+.++|++||.+.|.+||+..++|.+||++||||||++++|++|.||||
T Consensus 477 LVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEec
Confidence 99999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcC
Q 005436 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (697)
Q Consensus 360 ~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~ 439 (697)
.|++|+..|+|++|++.|...|+|++++.||+|||||++||+|||||+...|...++..+.|||+|.+|.+++|.|+++|
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLG 636 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLG 636 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccc
Q 005436 440 IDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQ 519 (697)
Q Consensus 440 ~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~ 519 (697)
|.|+.+|+|+|||+.+++..|+++|+.|||++..|+|| .+|+.|++||+||+++|||+.+-.+.|.+|+++||||||+.
T Consensus 637 I~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLT-k~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~ 715 (902)
T KOG0923|consen 637 IHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELT-KLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVG 715 (902)
T ss_pred cchhcccccCCCCChHHHHHHHHHHHHhhccccccchh-hhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 69999999999999999999999999999999999999997
Q ss_pred -cccccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcccC
Q 005436 520 -SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMK 598 (697)
Q Consensus 520 -~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~ 598 (697)
++|.+|.+....++++++.|....|||+.+|++|+.|..++.+.+||.+|++.+++|++++++|.||..++.+.++...
T Consensus 716 ~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~ 795 (902)
T KOG0923|consen 716 ASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLS 795 (902)
T ss_pred chheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 8999999988888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCcchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccchhhcccccccCHH
Q 005436 599 SCESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRNVISIDPS 678 (697)
Q Consensus 599 ~~~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~~~ir~vt~i~~~ 678 (697)
++..+...+++++.+|||+|+|+.. .+|.|.++...+.|++||.|++|...|.||+|++++.|++.|||.++.|.++
T Consensus 796 s~~~~~~~irk~i~aGff~h~a~l~---~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~ 872 (902)
T KOG0923|consen 796 SNQNDLDKIRKAITAGFFYHTAKLS---KGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEE 872 (902)
T ss_pred CChHHHHHHHHHHhccccccceecc---CCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhh
Confidence 7777788899999999999999987 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHhHcccccccccC
Q 005436 679 WLLEVAPHFYQQHRL 693 (697)
Q Consensus 679 wl~~~~~~~~~~~~~ 693 (697)
||.+++||||+..++
T Consensus 873 Wlie~aphyyk~kdl 887 (902)
T KOG0923|consen 873 WLIEVAPHYYKLKDL 887 (902)
T ss_pred HHHHhchhhhhhhhc
Confidence 999999999986554
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-135 Score=1045.07 Aligned_cols=628 Identities=45% Similarity=0.808 Sum_probs=607.8
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 41 ~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
.+..+|+.||++..++++++.+..|+++||+|+||||||||++|++++.++..++ .|.|+|||+.|+.+++++++.++|
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhC
Confidence 4889999999999999999999999999999999999999999999999998776 799999999999999999999999
Q ss_pred CcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEE
Q 005436 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (697)
Q Consensus 121 ~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii 200 (697)
..+|..+||.+||++.+.. .+.|.|+|.|+|++....+..|.+|++||+||||||++++|++.++++.+...+.++|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~-~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSE-DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCC-ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 9999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEE
Q 005436 201 ISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDIL 280 (697)
Q Consensus 201 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 280 (697)
++|||+|.+.|++||++++ .+.++||+|||++.|...+.+||++.++...+.+|...+.|++|
T Consensus 505 VtSATm~a~kf~nfFgn~p-----------------~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCP-----------------QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred EeeccccHHHHHHHhCCCc-----------------eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE
Confidence 9999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhccC-CCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEe
Q 005436 281 VFLTGQDDIDATIQLLTEEARTSKK-NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (697)
Q Consensus 281 VF~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId 359 (697)
||.+++++++..+..+.+.+.++.. ...++.|+++|+.||.+-|.++|+..+.|.+|+|||||+||++++||+|.||||
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEe
Confidence 9999999999999999888765432 224789999999999999999999999999999999999999999999999999
Q ss_pred cCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcC
Q 005436 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (697)
Q Consensus 360 ~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~ 439 (697)
+|+.|.++|++..|++.|.+.|||++++.||+|||||++||.||++|++..|...|...+.|||+|++|.+++|.|+++|
T Consensus 648 ~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslg 727 (1042)
T KOG0924|consen 648 TGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLG 727 (1042)
T ss_pred cCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccc
Q 005436 440 IDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQ 519 (697)
Q Consensus 440 ~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~ 519 (697)
++++..|+|+|||+.+.+..++-.|..+||||+.|.|| |+|+.|++|||||.++|||+.++.+||.+|+++|++|||+.
T Consensus 728 V~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT-~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp 806 (1042)
T KOG0924|consen 728 VDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT-PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVP 806 (1042)
T ss_pred hhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cccccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcccCC
Q 005436 520 SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKS 599 (697)
Q Consensus 520 ~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~ 599 (697)
.+|.+|.+..++++.+|.+|..++|||||+||+|++|..++++..||.+|+++.++|+.++++|+||+.+|+..+++..+
T Consensus 807 ~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S 886 (1042)
T KOG0924|consen 807 AVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLIS 886 (1042)
T ss_pred ceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCC-CCcEEEEEeecccchhhcccccccCHH
Q 005436 600 CESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRV-NPKWVIYHSLVSTDRQYMRNVISIDPS 678 (697)
Q Consensus 600 ~~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~-~~~~vv~~e~~~t~~~~ir~vt~i~~~ 678 (697)
+ .+|+++++|||+|||.|+|+++ +.|.|.+++++..+++||+|+|++. .|+||||+|++.|.+.||++||.|+|+
T Consensus 887 ~-~dwdivrKCIcs~~fhn~Arlk---g~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~ 962 (1042)
T KOG0924|consen 887 S-DDWDIVRKCICSAYFHNAARLK---GIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPE 962 (1042)
T ss_pred C-chHHHHHHHHHHHHHHHHHHhc---cCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHH
Confidence 7 8999999999999999999998 6788999999999999999999887 799999999999999999999999999
Q ss_pred HHHhHccccccccc
Q 005436 679 WLLEVAPHFYQQHR 692 (697)
Q Consensus 679 wl~~~~~~~~~~~~ 692 (697)
||.+++|.+|...+
T Consensus 963 wl~E~gp~~y~ik~ 976 (1042)
T KOG0924|consen 963 WLAELGPMFYSIKE 976 (1042)
T ss_pred HHHHhCceeEeccc
Confidence 99999999986543
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-132 Score=991.71 Aligned_cols=639 Identities=48% Similarity=0.814 Sum_probs=610.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
-|+++||++.+| ++.+.|..||+|.+++++++.+.+|+.++++|.||||||||+|||..+...... .-|.|+|||+.+
T Consensus 26 pf~~~p~s~rY~-~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrva 103 (699)
T KOG0925|consen 26 PFNGKPYSQRYY-DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVA 103 (699)
T ss_pred CCCCCcCcHHHH-HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHHH
Confidence 489999999876 799999999999999999999999999999999999999999999988765544 458999999999
Q ss_pred HHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHH
Q 005436 108 VQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLL 187 (697)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l 187 (697)
+.+++.|+++++++.+|..+||.++|+++.+. ++-+.|||+|+|++..+.++.+..+++||+||||||++.+|.+.+++
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~-~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll 182 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP-NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL 182 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCCh-hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHH
Q 005436 188 KKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (697)
Q Consensus 188 ~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (697)
+.+...++++|+|+||||++..+|..||++.+ ++.++| .+|++++|.+.+..||++.++..+
T Consensus 183 k~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~P-----------------ll~vpg-~~PvEi~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 183 KEVVRNRPDLKLVVMSATLDAEKFQRYFGNAP-----------------LLAVPG-THPVEIFYTPEPERDYLEAAIRTV 244 (699)
T ss_pred HHHHhhCCCceEEEeecccchHHHHHHhCCCC-----------------eeecCC-CCceEEEecCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999988 999999 999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC-----CcEEEEec
Q 005436 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-----KRKVVIST 342 (697)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-----~~kilvaT 342 (697)
+++|..+..|+||||+++.++|+.+++.+......+....+...|.++| +.++.++|+..+.. .+||+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 9999999999999999999999999999998888888888889999999 77888999887632 58999999
Q ss_pred CccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCc
Q 005436 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPE 422 (697)
Q Consensus 343 ~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pe 422 (697)
|++|+++++++|.+|||.|+.|+++|||+-..+.++..|||++++.||+|||||.+||+||+||+++.+...|.+.+.||
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~type 400 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPE 400 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcc
Q 005436 423 MQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNE 502 (697)
Q Consensus 423 i~~~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~ 502 (697)
|++++|.+++|++|.+|++++..|+|+|||.++++.+|++.|..++|+|+||++| ++|..||+||+||++|||||.+++
T Consensus 401 ilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT-~lG~imSEFPLdPqLAkmLi~S~e 479 (699)
T KOG0925|consen 401 ILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT-SLGEIMSEFPLDPQLAKMLIGSCE 479 (699)
T ss_pred HHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-hhhhhhhcCCCChHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred cCChHHHHHHHHHhccccccccCc-chhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHH
Q 005436 503 LGCSEEIITISAVLSIQSIWVSGR-GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIE 581 (697)
Q Consensus 503 ~~c~~~~~~i~a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ 581 (697)
|+|.+|+++|+||||+++.|.+|. +.++.++++++.|++.+|||++++|+|.+|++.+...+||++||||+++|+.|.+
T Consensus 480 fnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~ 559 (699)
T KOG0925|consen 480 FNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADN 559 (699)
T ss_pred CCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHH
Confidence 999999999999999999999998 6788899999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHcCcccCCCc----chHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEE
Q 005436 582 IREQLRRIAQRIGIVMKSCE----SDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVI 657 (697)
Q Consensus 582 i~~ql~~~l~~~~~~~~~~~----~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv 657 (697)
+|.||.++|.+++++..+.+ .+...|+|+|++|||++||+.. .++.|.++..++.|++||++++. ++|+||+
T Consensus 560 vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~---~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVl 635 (699)
T KOG0925|consen 560 VRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLE---RGGHYLTVKDNQVVQLHPSTCLD-HKPEWVL 635 (699)
T ss_pred HHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhc---cCCceEEEecCceEEeccccccC-CCCCeEE
Confidence 99999999999999875432 2456799999999999999987 45689999999999999999995 6899999
Q ss_pred EEeecccchhhcccccccCHHHHHhHcccccccccCCCC
Q 005436 658 YHSLVSTDRQYMRNVISIDPSWLLEVAPHFYQQHRLNPI 696 (697)
Q Consensus 658 ~~e~~~t~~~~ir~vt~i~~~wl~~~~~~~~~~~~~~~~ 696 (697)
|+|.+.|+++|||.||.|.|+||.+++|+||..++++|+
T Consensus 636 yneFvlt~~N~ir~vt~I~pewlv~laP~YydlsNfp~~ 674 (699)
T KOG0925|consen 636 YNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSNFPPS 674 (699)
T ss_pred EeeEEeeccceeeeecccCHHHHHHhchhhcccccCCch
Confidence 999999999999999999999999999999999999885
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.5e-116 Score=1007.03 Aligned_cols=620 Identities=37% Similarity=0.635 Sum_probs=567.7
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc
Q 005436 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (697)
Q Consensus 44 ~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~ 123 (697)
.++.+||++.++++|++++.++++++|+|+|||||||++|+++++...... ..|+|++||++++.+++++++.+++..+
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 346789999999999999999999999999999999999999988654332 3588999999999999999999999999
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
|..+||.+++++..+. .++|+|+|||+|++.+..++.+.++++|||||||||++++|+++++++.+...+++.|+|+||
T Consensus 147 G~~VGY~vrf~~~~s~-~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS 225 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSD-NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS 225 (1294)
T ss_pred cceeceeecCccccCC-CCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence 9999999999988877 899999999999999999989999999999999999999999999999988888899999999
Q ss_pred ccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc------chHHHHHHHHHHHHHhcCCCC
Q 005436 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (697)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 277 (697)
||++.+.|+++|++.+ ++.++|+.|+++++|..... .+++...+..+..+. ....|
T Consensus 226 ATid~e~fs~~F~~ap-----------------vI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~G 287 (1294)
T PRK11131 226 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPG 287 (1294)
T ss_pred CCCCHHHHHHHcCCCC-----------------EEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCC
Confidence 9999999999998765 88999999999999976532 234444444444443 34678
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEE
Q 005436 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (697)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~V 357 (697)
++||||||+++++.+++.|.+. +.+...+.++||+|++++|.++++. .|.++||||||++|+|||||+|++|
T Consensus 288 dILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE
Confidence 9999999999999999999764 2234678999999999999999986 5789999999999999999999999
Q ss_pred EecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHH
Q 005436 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (697)
Q Consensus 358 Id~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~ 437 (697)
||+|+.|.+.||+.++++.+...|+|+++|.||+|||||.++|.||+||++++|.. ++++..|||+|++|.+++|++++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~ 438 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTA 438 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCC-----CCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHH
Q 005436 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDD-----AKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (697)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~-----~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i 512 (697)
+|++++..|+|++||+.+++.+|++.|..+||||.+ +++| ++|+.|++||+||++||||+.|..++|++++++|
T Consensus 439 lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~I 517 (1294)
T PRK11131 439 LGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMII 517 (1294)
T ss_pred cCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHH
Confidence 999999999999999999999999999999999854 5799 8999999999999999999999999999999999
Q ss_pred HHHhccccccccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcC------chhhHHHHhcCCHHHHHHHHHHHHHH
Q 005436 513 SAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMKKVIEIREQL 586 (697)
Q Consensus 513 ~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~i~~ql 586 (697)
||+||++++|..|.+.+++++..+.+|.+..|||++++|+|+.|.+.. ..++||++||||+.+|+++.+++.||
T Consensus 518 aA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL 597 (1294)
T PRK11131 518 TSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQL 597 (1294)
T ss_pred HHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999997532 13679999999999999999999999
Q ss_pred HHHHHHcCcccCCCcchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccch
Q 005436 587 RRIAQRIGIVMKSCESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDR 666 (697)
Q Consensus 587 ~~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~ 666 (697)
.++++++|+..+++..+.+.|++||++||+.|+|+... ..+.|.+.++ ..++|||+|+|++++|+||||+|++.|++
T Consensus 598 ~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~--~~~~y~~~~~-~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr 674 (1294)
T PRK11131 598 RQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDA--EKQEYTGARN-ARFSIFPGSGLFKKPPKWVMVAELVETSR 674 (1294)
T ss_pred HHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccC--CCCeEEccCC-cEEEEcCCccccCCCCCEEEEEeeeccCh
Confidence 99999999988877778999999999999999998762 2345888774 48999999999999999999999999999
Q ss_pred hhcccccccCHHHHHhHcccccccccCCCC
Q 005436 667 QYMRNVISIDPSWLLEVAPHFYQQHRLNPI 696 (697)
Q Consensus 667 ~~ir~vt~i~~~wl~~~~~~~~~~~~~~~~ 696 (697)
.|||+|+.|+|+||.+++|++++.++++|-
T Consensus 675 ~y~r~va~I~p~Wl~~~a~~l~~~~y~ePh 704 (1294)
T PRK11131 675 LWGRIAARIEPEWIEPLAQHLIKRSYSEPH 704 (1294)
T ss_pred hhhhhhcccCHHHHHHHHHHhccccCCCCc
Confidence 999999999999999999999999999883
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.2e-111 Score=973.18 Aligned_cols=619 Identities=38% Similarity=0.661 Sum_probs=567.3
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 43 EKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 43 ~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
..++..||++.++++|++++.+++++||+|+|||||||++|+++++......+ .|+|++||++++.++++++++++|..
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCCC
Confidence 34567899999999999999999999999999999999999999987644333 58899999999999999999999999
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
+|..+||.+++++..+. +++|+|+|+|+|++.+..++.+.++++|||||||||++++|+++++++.+...++++|+|+|
T Consensus 139 lG~~VGY~vR~~~~~s~-~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSS-NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred cceEEeeEEcCCcccCC-CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 99999999999999888 89999999999999999999999999999999999999999999999999888899999999
Q ss_pred cccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc------chHHHHHHHHHHHHHhcCCC
Q 005436 203 SATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPP 276 (697)
Q Consensus 203 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 276 (697)
|||++.+.|+++|++.+ ++.++|+.||++++|..... .++.+.....+..+.. ...
T Consensus 218 SATld~~~fa~~F~~ap-----------------vI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~ 279 (1283)
T TIGR01967 218 SATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGP 279 (1283)
T ss_pred eCCcCHHHHHHHhcCCC-----------------EEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCC
Confidence 99999999999998766 88999999999999976432 1344444555544443 356
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEE
Q 005436 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (697)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~ 356 (697)
|++|||+||+++++.+++.|.+.. ..+..+.++||+|+.++|.++++.+ +.++||||||++|+|||||+|++
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~y 351 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHY 351 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeE
Confidence 899999999999999999997652 2357899999999999999999875 35899999999999999999999
Q ss_pred EEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHH
Q 005436 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLK 436 (697)
Q Consensus 357 VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~ 436 (697)
|||+|+.|.+.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||++++|.. ++++..|||+|++|.+++|+++
T Consensus 352 VIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~ 430 (1283)
T TIGR01967 352 VIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQML 430 (1283)
T ss_pred EEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCC---CCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHH
Q 005436 437 ALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITIS 513 (697)
Q Consensus 437 ~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~ 513 (697)
++|+.++..|+|++||+.+++..|++.|..+||||++| ++| ++|+.|+.||++|++||||+.|..++|++++++||
T Consensus 431 ~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~Ia 509 (1283)
T TIGR01967 431 ALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLT-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIA 509 (1283)
T ss_pred hcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCcccc-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999988 799 89999999999999999999999999999999999
Q ss_pred HHhccccccccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcC------chhhHHHHhcCCHHHHHHHHHHHHHHH
Q 005436 514 AVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMKKVIEIREQLR 587 (697)
Q Consensus 514 a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~i~~ql~ 587 (697)
|+||++++|..|.+.++++++.+.+|....|||++++|+|+.|.+.. ...+||++||||+..|+++.++++||.
T Consensus 510 A~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~ 589 (1283)
T TIGR01967 510 SALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLT 589 (1283)
T ss_pred HHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 99999999999988888899999999999999999999999997632 236899999999999999999999999
Q ss_pred HHHHHcCcccCCCcchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccchh
Q 005436 588 RIAQRIGIVMKSCESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQ 667 (697)
Q Consensus 588 ~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~~ 667 (697)
+++++.++..+++..+.+.+.+||++||++|||+++ ..+.|.+.++. .+.|||+|+|++.+|+||||+|++.|++.
T Consensus 590 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~---~~~~y~~~~g~-~~~ihP~S~L~~~~p~wvv~~elv~t~~~ 665 (1283)
T TIGR01967 590 QVVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKD---EKHEYDGARGR-KFHIFPGSPLFKKPPKWVMAAELVETSKL 665 (1283)
T ss_pred HHHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeC---CCCcEEecCCc-EEEECCCccccCCCCCEEEEeeecccchh
Confidence 999998887766555677799999999999999987 34679998865 79999999999888999999999999999
Q ss_pred hcccccccCHHHHHhHcccccccccCCC
Q 005436 668 YMRNVISIDPSWLLEVAPHFYQQHRLNP 695 (697)
Q Consensus 668 ~ir~vt~i~~~wl~~~~~~~~~~~~~~~ 695 (697)
||+.|++|+|+||.+++|++++.++..|
T Consensus 666 ~ir~~a~I~p~wl~~~~~~~~~~~~~~~ 693 (1283)
T TIGR01967 666 YARLVAKIEPEWVEPVAGHLIKKNYFEP 693 (1283)
T ss_pred eEeeeccCCHHHHHHHhHHHhEeccCce
Confidence 9999999999999999999998886654
No 7
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-109 Score=866.58 Aligned_cols=634 Identities=38% Similarity=0.618 Sum_probs=568.2
Q ss_pred hhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCC----CeEEEEECccHHHHHHHHHHH
Q 005436 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVASRV 115 (697)
Q Consensus 40 ~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~----~~~Ivv~p~r~l~~~~~~~~~ 115 (697)
.++++.|..|||....++|+++|..|.++||||.||||||||+||+++++++... +.+|-|++||++|+..+++|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999988765 568999999999999999999
Q ss_pred HHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-
Q 005436 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR- 194 (697)
Q Consensus 116 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~- 194 (697)
+.++|. .+..|||++||+..... .+.|.|||+|+|++.+.++..|..|+.|||||||||++++|++.+++.++...|
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e-~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGE-DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCC-CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 999998 89999999999999999 899999999999999999999999999999999999999999999999987644
Q ss_pred ---------CCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHH
Q 005436 195 ---------SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (697)
Q Consensus 195 ---------~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (697)
..+|+|+||||+...+|.+- . .+....++++.++.|+|||.++|......||+..+..
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFten---k----------~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfr 470 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTEN---K----------RLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFR 470 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccC---c----------eecCCCCceeeeecccCceEEEeccCCCchHHHHHHH
Confidence 37999999999987766521 0 1122345599999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh-------------------------------------------
Q 005436 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART------------------------------------------- 302 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~------------------------------------------- 302 (697)
..+.+|..-+.|.||||+.++.++..+++.|++.++.
T Consensus 471 Ktc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 471 KTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 9999999999999999999999999999999987441
Q ss_pred --------c---------------------------------------cCCCCCeEEEEecCCCCHHHHhhccCCCCCCC
Q 005436 303 --------S---------------------------------------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (697)
Q Consensus 303 --------~---------------------------------------~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (697)
. ......+.|+++|+-|+.++|.+||+..+.|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 0 00111345999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhC
Q 005436 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEI 415 (697)
Q Consensus 336 ~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~ 415 (697)
+-++||||+||+++|||+|+||||+|..|.+.||..+|++.+...|+|++++-||+|||||.+||+|||||+...|+..+
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~F 710 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDF 710 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCcccccchhHHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHH
Q 005436 416 PAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISK 495 (697)
Q Consensus 416 ~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~ 495 (697)
+.+..|||++.+.++++|++++|+|+++..|+|++||.+.+++.|.+.|..+||||.+|.+| +||+.||.||+.|+++|
T Consensus 711 e~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT-~lGk~mS~FPlsPrfsK 789 (1172)
T KOG0926|consen 711 EEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT-KLGKAMSLFPLSPRFSK 789 (1172)
T ss_pred hhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-cccchhcccccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHhhcccCChHHHHHHHHHhccccccccCc------------chh--------------------HHHHHHHHhhccCC
Q 005436 496 MILSSNELGCSEEIITISAVLSIQSIWVSGR------------GAQ--------------------KELDEAKLRFAAAE 543 (697)
Q Consensus 496 ~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~------------~~~--------------------~~~~~~~~~~~~~~ 543 (697)
||+.+.+.+|+...+.++++||+..+|+.-. ..+ .....++.+|....
T Consensus 790 mL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~ 869 (1172)
T KOG0926|consen 790 MLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLD 869 (1172)
T ss_pred HHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999998776321 000 01122456677778
Q ss_pred CcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCccc----------CCCcchHHHHHHHHHh
Q 005436 544 GDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM----------KSCESDMQVVRKAVTA 613 (697)
Q Consensus 544 ~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~----------~~~~~~~~~i~~~l~~ 613 (697)
||-+.++.+-..+..+++...||..|||..++|.++.++|+||..++++.++.. ...+.....++.++|+
T Consensus 870 sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~A 949 (1172)
T KOG0926|consen 870 SDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICA 949 (1172)
T ss_pred ccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHH
Confidence 999999999999988887778999999999999999999999999987544322 1112235578999999
Q ss_pred hcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccchhhcc-cccccCHHHHHhHccccccccc
Q 005436 614 GFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMR-NVISIDPSWLLEVAPHFYQQHR 692 (697)
Q Consensus 614 g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~~~ir-~vt~i~~~wl~~~~~~~~~~~~ 692 (697)
||.+++|++.+ -..|....-..+++|||+|+|++..|+||+|.|++.++..||. ++|.|+|+||+.+++.+|+.++
T Consensus 950 g~~DrVArk~~---~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~e 1026 (1172)
T KOG0926|consen 950 GFADRVARKVD---ATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFSE 1026 (1172)
T ss_pred HHHHHHHHhcc---ccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhccccc
Confidence 99999998652 2347776666789999999999999999999999999998855 5999999999999999987654
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-106 Score=900.09 Aligned_cols=624 Identities=44% Similarity=0.675 Sum_probs=569.3
Q ss_pred CCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHH
Q 005436 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS 113 (697)
Q Consensus 34 ~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~ 113 (697)
...+.+..+..++..||++..+.+|++++.+++++||+|||||||||++|+++++..+. ++..|+|++||++++.++++
T Consensus 34 ~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~-~~g~I~~tQPRRlAArsvA~ 112 (845)
T COG1643 34 SRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG-IAGKIGCTQPRRLAARSVAE 112 (845)
T ss_pred hcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc-cCCeEEecCchHHHHHHHHH
Confidence 34445577888999999999999999999999999999999999999999999999874 34469999999999999999
Q ss_pred HHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 005436 114 RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (697)
Q Consensus 114 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~ 193 (697)
|+++++|.++|..|||.+||++..+. .++|.|+|+|+|+++++.++.|+.|++|||||+|||++++|+++++++.+...
T Consensus 113 RvAeel~~~~G~~VGY~iRfe~~~s~-~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 113 RVAEELGEKLGETVGYSIRFESKVSP-RTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred HHHHHhCCCcCceeeEEEEeeccCCC-CceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988 99999999999999999999999999999999999999999999999997775
Q ss_pred CC-CceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchH-HHHHHHHHHHHH
Q 005436 194 RS-DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDY-VQAAVSTVLLIH 271 (697)
Q Consensus 194 ~~-~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 271 (697)
++ ++|+|+||||+|.+.|++||++++ ++.++|+.|||+++|......++ +...+...+.++
T Consensus 192 rr~DLKiIimSATld~~rfs~~f~~ap-----------------vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~ 254 (845)
T COG1643 192 RRDDLKLIIMSATLDAERFSAYFGNAP-----------------VIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIH 254 (845)
T ss_pred cCCCceEEEEecccCHHHHHHHcCCCC-----------------EEEecCCccceEEEecCCCCcchhHHHHHHHHHHHh
Confidence 55 799999999999999999999988 99999999999999988888888 888999999999
Q ss_pred hcCCCCcEEEEcCCHHHHHHHHHHHHH-HhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccC
Q 005436 272 DKEPPGDILVFLTGQDDIDATIQLLTE-EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT 350 (697)
Q Consensus 272 ~~~~~~~iLVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvd 350 (697)
..+..|+||||+|+.++|+.+++.|.+ .+ .....|.++||.|+.++|.++|+..+.|++|||+||||+|+|||
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~~l------~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLT 328 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKAEL------GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLT 328 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhccc------cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcccccccee
Confidence 999999999999999999999999987 21 14789999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhH
Q 005436 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVS 430 (697)
Q Consensus 351 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~ 430 (697)
||+|++|||+|+.|++.||+.++++.|.+.|+|++++.||+|||||..||+||+||++++|.. |+.++.|||++++|.+
T Consensus 329 I~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~ 407 (845)
T COG1643 329 IPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSG 407 (845)
T ss_pred eCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHHHcCCC-CccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHH
Q 005436 431 CVIQLKALGID-NILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEI 509 (697)
Q Consensus 431 ~~L~l~~~~~~-~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~ 509 (697)
++|+++++|++ ++..|+|+|||+..++..|++.|..+||||++|.+| ++|+.|+.||+||++|+|++.+..++|.+++
T Consensus 408 ~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT-~lG~~ms~lpldprLA~mLl~a~~~g~~~e~ 486 (845)
T COG1643 408 LVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT-PLGKQMSLLPLDPRLARMLLTAPEGGCLGEA 486 (845)
T ss_pred HHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-HHHHHHHhCCCChHHHHHHHhccccCcHHHH
Confidence 99999999995 999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHhcccc---ccccCcchhH---HHHHHH-Hhhcc---CCCcHHHHHHHHHhhhhcC------chhhHHHHhcCCH
Q 005436 510 ITISAVLSIQS---IWVSGRGAQK---ELDEAK-LRFAA---AEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINY 573 (697)
Q Consensus 510 ~~i~a~ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~ 573 (697)
++|||+||+++ .|..+.+.++ +.+..+ ..+.. ..+||++++++|..|.... ...+||..++++.
T Consensus 487 ~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 566 (845)
T COG1643 487 ATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPT 566 (845)
T ss_pred HHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCCh
Confidence 99999999998 6777666555 333333 33444 5699999999999998866 4688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-cCcccCCCcc------------------hHHHHHHHHHhhcccceeeeccccCCccEEEe
Q 005436 574 HAMKKVIEIREQLRRIAQR-IGIVMKSCES------------------DMQVVRKAVTAGFFANACYSEAYSQSGMYKTV 634 (697)
Q Consensus 574 ~~l~~~~~i~~ql~~~l~~-~~~~~~~~~~------------------~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~ 634 (697)
+.|.++..++.++...+.+ .+........ .|+.+.+++++|++.|++.+. .....|.+.
T Consensus 567 ~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~--~~~~~~~~~ 644 (845)
T COG1643 567 KALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQ--LDGRPYVTL 644 (845)
T ss_pred hHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeee--ccccccccC
Confidence 9999999999999887766 4433211111 367889999999999999987 233458999
Q ss_pred eCCeeEEECCCC-CCCCCCCcEEEEEeecccchhhcc-----------cccccCHHHHHhHccc
Q 005436 635 RGSQEVYIHPSS-VLFRVNPKWVIYHSLVSTDRQYMR-----------NVISIDPSWLLEVAPH 686 (697)
Q Consensus 635 ~~~~~v~ihpsS-~l~~~~~~~vv~~e~~~t~~~~ir-----------~vt~i~~~wl~~~~~~ 686 (697)
.+...+.+||+| ......++|+.|++.+++++.|++ .++.+.++||.+.++.
T Consensus 645 ~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~ 708 (845)
T COG1643 645 SDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKG 708 (845)
T ss_pred CCCceeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccc
Confidence 988899999999 556677899999999999999999 6999999999998874
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=8.8e-106 Score=886.99 Aligned_cols=636 Identities=36% Similarity=0.591 Sum_probs=568.3
Q ss_pred CCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCC-eEEEEECccHHHHHH
Q 005436 32 ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQA 110 (697)
Q Consensus 32 ~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~-~~Ivv~p~r~l~~~~ 110 (697)
.+-.+..|+++...|.+||+++++++|++++.++++++|+|.||||||||+||++++..+..++ ..|+|+|||++++.+
T Consensus 155 ~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIs 234 (924)
T KOG0920|consen 155 EPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAIS 234 (924)
T ss_pred hhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHH
Confidence 3455667899999999999999999999999999999999999999999999999987554443 349999999999999
Q ss_pred HHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHH
Q 005436 111 VASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (697)
Q Consensus 111 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~ 190 (697)
+++|++.+++...|..+||+++.++..+. .+.+.|||.|.|++.+..++.+.++++||+||+|||+.++|+++.+++.+
T Consensus 235 vAeRVa~ER~~~~g~~VGYqvrl~~~~s~-~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 235 VAERVAKERGESLGEEVGYQVRLESKRSR-ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred HHHHHHHHhccccCCeeeEEEeeecccCC-ceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 99999999999999999999999999988 69999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc----------c---
Q 005436 191 QRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----------S--- 257 (697)
Q Consensus 191 ~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~--- 257 (697)
+..++++|+|+||||+|.+.|++||++++ ++.++|+.||+..+|+++.. .
T Consensus 314 L~~~p~LkvILMSAT~dae~fs~YF~~~p-----------------vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~ 376 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAELFSDYFGGCP-----------------VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARS 376 (924)
T ss_pred hhhCCCceEEEeeeecchHHHHHHhCCCc-----------------eEeecCCCcchHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999888 99999999999988865321 0
Q ss_pred ----h--------------HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCC
Q 005436 258 ----D--------------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (697)
Q Consensus 258 ----~--------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (697)
. -.+.....+..++.....|.||||+||.+++..+.+.|...... .+..++.+.++|+.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f--~~~~~~~ilplHs~~ 454 (924)
T KOG0920|consen 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF--ADSLKFAILPLHSSI 454 (924)
T ss_pred ccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc--ccccceEEEeccccC
Confidence 0 01233445556666777899999999999999999999764321 112468899999999
Q ss_pred CHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCC
Q 005436 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (697)
Q Consensus 320 ~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~ 399 (697)
+.++|+.||...+.|.+|||+|||+||++||||+|.||||+|+.|++.||+..++..+...|+|++++.||+|||||..+
T Consensus 455 ~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~ 534 (924)
T KOG0920|consen 455 PSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP 534 (924)
T ss_pred ChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCC
Q 005436 400 GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLT 477 (697)
Q Consensus 400 G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~~~~a~~~L~~lgald~~~~lT 477 (697)
|.||+||++..|+..+..+++|||+|.+|.++||++|.++...+..| ..++||+.+++..|+..|..+||++++++||
T Consensus 535 G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT 614 (924)
T KOG0920|consen 535 GICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELT 614 (924)
T ss_pred CeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccch
Confidence 99999999999999555599999999999999999999998887766 6799999999999999999999999999999
Q ss_pred hHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccccccccCcchhHHHHHHHHhhccCC-CcHHHHHHHHHhh
Q 005436 478 SPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAE-GDHVTFLNIYKGF 556 (697)
Q Consensus 478 ~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~-~D~~~~l~~~~~~ 556 (697)
|||+.++.+|+||++|||++.|+.|+|++++++|||+|+.++||..|.++++..++.+..|.... |||++++++|+.|
T Consensus 615 -~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w 693 (924)
T KOG0920|consen 615 -PLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGW 693 (924)
T ss_pred -HHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998887665 9999999999999
Q ss_pred hhcC-----chhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcccCC------------CcchHHHHHHHHHhhcccce
Q 005436 557 LQSC-----KSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKS------------CESDMQVVRKAVTAGFFANA 619 (697)
Q Consensus 557 ~~~~-----~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~------------~~~~~~~i~~~l~~g~~~ni 619 (697)
.... ...+||++|||+..+|+++..++.|+...+.+.++...+ ...+.+.+++++|+|||||+
T Consensus 694 ~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i 773 (924)
T KOG0920|consen 694 REILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNI 773 (924)
T ss_pred HHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCce
Confidence 8753 257899999999999999999999999999998876532 23357889999999999999
Q ss_pred eeeccc---cCCccEEEeeCCeeEEECCCCCCCCC---CCcEEEEEeecccch-hhcccccccCHHHHHhHcccccc
Q 005436 620 CYSEAY---SQSGMYKTVRGSQEVYIHPSSVLFRV---NPKWVIYHSLVSTDR-QYMRNVISIDPSWLLEVAPHFYQ 689 (697)
Q Consensus 620 A~~~~~---~~~~~y~~~~~~~~v~ihpsS~l~~~---~~~~vv~~e~~~t~~-~~ir~vt~i~~~wl~~~~~~~~~ 689 (697)
|+.... ...-.|.+-.. ..+.|||+|+.++. ..+|++|+|.++|++ .|+|++|.+++-.++.+++..+.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~-~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~ 849 (924)
T KOG0920|consen 774 AFVRRMEPKSKSVTFVTKAD-GRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIST 849 (924)
T ss_pred eeeecccCCcCcceeecCCc-eeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCcee
Confidence 987631 11112322222 37999999999643 235999999999999 99999999999999999887663
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-88 Score=767.47 Aligned_cols=574 Identities=31% Similarity=0.499 Sum_probs=489.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
|||+.+..+|++++.+++++|++|+|||||||++|+++++... .++ .|+|++||++++.+++++++++++..+|..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~-~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGG-KIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCC-eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 7999999999999999999999999999999999999987653 233 47778888888889999999999999999999
Q ss_pred eEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEeccccc
Q 005436 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIE 207 (697)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~ 207 (697)
|.+++++..+. .++|+|+|+|.|++.+..++.+.++++|||||+|||++++|+++++++.+.. .+++.|+|+||||++
T Consensus 79 y~vr~~~~~s~-~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 79 YRVRGENKVSR-RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEccccccCC-CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 99999887776 7999999999999999988889999999999999999999999888887765 578999999999999
Q ss_pred HHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHH-HHHHHHHhcCCCCcEEEEcCCH
Q 005436 208 AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV-STVLLIHDKEPPGDILVFLTGQ 286 (697)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iLVF~~~~ 286 (697)
.+.+.+||++.+ ++.++++.|+++++|......++....+ ..+..... ...|++|||||++
T Consensus 158 ~~~l~~~l~~~~-----------------vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~ 219 (819)
T TIGR01970 158 GERLSSLLPDAP-----------------VVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQ 219 (819)
T ss_pred HHHHHHHcCCCc-----------------EEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCH
Confidence 999999997655 7889999999999998766555443333 22333332 3468999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccce
Q 005436 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (697)
Q Consensus 287 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~ 366 (697)
++++.+++.|.+... .++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+
T Consensus 220 ~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 220 AEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccc
Confidence 999999999976431 37899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCC
Q 005436 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (697)
Q Consensus 367 ~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~ 446 (697)
.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||+++++.. |.++..|||++.+|.+++|+++.+|+.++..|
T Consensus 294 ~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~ 372 (819)
T TIGR01970 294 RFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDL 372 (819)
T ss_pred ccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccccccccCc
Q 005436 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGR 526 (697)
Q Consensus 447 ~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~ 526 (697)
+|++||+.+++..|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.+++++|||+||+++++..
T Consensus 373 ~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-- 449 (819)
T TIGR01970 373 RWLDAPPSVALAAARQLLQRLGALDAQGRLT-AHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-- 449 (819)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC--
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999986421
Q ss_pred chhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcc-cC-CCcchH
Q 005436 527 GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIV-MK-SCESDM 604 (697)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~-~~-~~~~~~ 604 (697)
..+|+...+..+.... ...|. .+.++.+|+.+.+ +.. .. ....+.
T Consensus 450 ---------------~~~d~~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~ 496 (819)
T TIGR01970 450 ---------------GGADLMNRLHRLQQGR-----QGRGQ----------RAQQLAKKLRRRL---RFSQADSGAIASH 496 (819)
T ss_pred ---------------CcccHHHHHHHHhhcc-----hhhHH----------HHHHHHHHHHHHh---CcCcCCCcccccc
Confidence 1357766666554310 11221 2334444544332 211 10 111111
Q ss_pred HHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccc---hhhcccccccCHHHHH
Q 005436 605 QVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTD---RQYMRNVISIDPSWLL 681 (697)
Q Consensus 605 ~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~---~~~ir~vt~i~~~wl~ 681 (697)
.+..+++.||.++||++++ +.+.|...+|. .+.+++.|.|. ..+|++..|+..++ ...|+.+++|+++||.
T Consensus 497 -~~g~lla~a~pdria~~r~--~~~~y~l~~G~-~~~l~~~~~l~--~~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~ 570 (819)
T TIGR01970 497 -ALGLLLALAFPDRIAKRRG--QPGRYQLANGR-GAVLSAEDALA--REPWLVAADLGEGQGKTAARILLAAPVDEALLR 570 (819)
T ss_pred -hHhHHHhhhChHhheeccC--CCCeEECCCCC-eeEeCCCCccc--CCCeEEEEEeeccCCccccceeeeccCCHHHHH
Confidence 2566889999999999873 34569888887 79999999997 45899999997442 2468899999999999
Q ss_pred hHccccccccc
Q 005436 682 EVAPHFYQQHR 692 (697)
Q Consensus 682 ~~~~~~~~~~~ 692 (697)
+.+++.+...+
T Consensus 571 ~~~~~~~~~~~ 581 (819)
T TIGR01970 571 QVLPDLVVQVD 581 (819)
T ss_pred HHhHHHceEEE
Confidence 99998875443
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1e-87 Score=765.01 Aligned_cols=565 Identities=32% Similarity=0.519 Sum_probs=481.1
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
.|||+++.++|++++.++++++++|||||||||++|+++++..... ++ |+|++||++++.+++++++++++..+|..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~~-ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN-GK-IIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC-Ce-EEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 4999999999999999999999999999999999999998765432 33 677888888888999999999999999999
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccc
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~ 206 (697)
||.++++..... .++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+.+++++.+.. .++++|+|+||||+
T Consensus 81 Gy~vr~~~~~~~-~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 81 GYRMRAESKVGP-NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEecCccccCC-CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 999999887777 7899999999999999988889999999999999999999999998887765 57899999999999
Q ss_pred cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCH
Q 005436 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ 286 (697)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 286 (697)
+.+.+.+||++.+ ++.++|+.|+++.+|......++....+...+........+++|||+||+
T Consensus 160 ~~~~l~~~~~~~~-----------------~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 160 DNDRLQQLLPDAP-----------------VIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred CHHHHHHhcCCCC-----------------EEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 9999999987655 78889999999999987766655544333222222233578999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccce
Q 005436 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (697)
Q Consensus 287 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~ 366 (697)
++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+
T Consensus 223 ~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 223 GEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred HHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 999999999986421 26889999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCC
Q 005436 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (697)
Q Consensus 367 ~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~ 446 (697)
.||+.++++.+.+.++|+++|.||+|||||.++|.||+||+++++.. ++++..|||++.+|.+++|.++++|+.++..|
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~ 375 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQL 375 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChH--HHHHHHHHhcccccccc
Q 005436 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSE--EIITISAVLSIQSIWVS 524 (697)
Q Consensus 447 ~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~--~~~~i~a~ls~~~~f~~ 524 (697)
+|+|||+.+++..|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.. .++.+||+|+.++.
T Consensus 376 ~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--- 451 (812)
T PRK11664 376 SWLDQPPAAALAAAKRLLQQLGALDGQGRLT-ARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--- 451 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC---
Confidence 9999999999999999999999999999999 89999999999999999999999998753 67778888776532
Q ss_pred CcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcccCCCcchH
Q 005436 525 GRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCESDM 604 (697)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~~~ 604 (697)
+. .+|....+..+. ..|+ ..+.++.+|+.+. .+ . .+.
T Consensus 452 --~~--------------~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~---~~-~-----~~~ 488 (812)
T PRK11664 452 --SG--------------SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVR---GG-E-----ADS 488 (812)
T ss_pred --CC--------------cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhh---cc-c-----CCh
Confidence 00 234433333221 1342 2344444554331 11 1 133
Q ss_pred HHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccc-h--hhcccccccCHHHHH
Q 005436 605 QVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTD-R--QYMRNVISIDPSWLL 681 (697)
Q Consensus 605 ~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~-~--~~ir~vt~i~~~wl~ 681 (697)
+.+..+++.||+++||++++ ..+.|.+.+|. .+.+||+|.|. ..+|+|+.|++.++ + ..|+.+++|+++||.
T Consensus 489 ~~~~~~la~aypdriA~~r~--~~~~~~l~~G~-~a~l~~~~~l~--~~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~ 563 (812)
T PRK11664 489 SLIAPLLALAFPDRIARRRG--QDGRYQLANGM-GAMLDADDALS--RHEWLIAPLLLQGSASPDARILLALPLDIDELV 563 (812)
T ss_pred HHHHHHHHHHCHHHHhhhcC--CCCeEEeeCCC-eEEECCCCccc--CCCeEEEEEhhccCccccceeeEeeccCHHHHH
Confidence 45788999999999999872 34568777665 89999999997 46999999997653 3 348899999999999
Q ss_pred hHcccccccc
Q 005436 682 EVAPHFYQQH 691 (697)
Q Consensus 682 ~~~~~~~~~~ 691 (697)
+.++..+...
T Consensus 564 ~~~~~~~~~~ 573 (812)
T PRK11664 564 QRCPQLVQQS 573 (812)
T ss_pred HHHHHhceee
Confidence 9999887543
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=8.8e-63 Score=523.36 Aligned_cols=645 Identities=29% Similarity=0.432 Sum_probs=521.1
Q ss_pred CccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCC---eEEEEECccHHHHHHH
Q 005436 35 IGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAV 111 (697)
Q Consensus 35 ~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~---~~Ivv~p~r~l~~~~~ 111 (697)
+...++.+..+|..||+..+.++|++++..+++++|.+.||+|||+++.+++++....++. .-+++++||++.++.+
T Consensus 363 ~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 363 RDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISL 442 (1282)
T ss_pred cccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHH
Confidence 4556778889999999999999999999999999999999999999999999987655432 2388999999999999
Q ss_pred HHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH
Q 005436 112 ASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (697)
Q Consensus 112 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~ 191 (697)
+++++.+.+..++..+||++|+++........|.+||.|.+++.+.+. +..++++|+||.|+|..++|+++.+++.+.
T Consensus 443 aerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 999999999999999999999999888767899999999999987653 678899999999999999999999999999
Q ss_pred HhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccc-----cCCCCCCcEEEeccceeeeEEEecCCCcch--------
Q 005436 192 RCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVE-----LVPRLEPAILSVEGRGFNVQIHYVEEPVSD-------- 258 (697)
Q Consensus 192 ~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 258 (697)
...+++++++||||+|.+.|..||...+........- ...........++++.++.+.++.++....
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 9999999999999999999999999887321110000 000001112233333333332222211000
Q ss_pred --------HH----------------HHHHH-HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 005436 259 --------YV----------------QAAVS-TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (697)
Q Consensus 259 --------~~----------------~~~~~-~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (697)
+. -...+ .+..+....-.+.|+||++++..+..++..+...- ...+...+.++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~--~fg~~~~y~il 678 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ--EFGQANKYEIL 678 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh--hhccchhcccc
Confidence 00 00111 12223334456889999999999999999887652 12233467899
Q ss_pred EecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcc
Q 005436 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (697)
Q Consensus 314 ~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GR 393 (697)
++|+.++..++.++++..+.|..|+|++|+++++++++.++.+|||.+..+.+.|-....+..+.+.|.|+-+..||.||
T Consensus 679 p~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 679 PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred cchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCcc
Q 005436 394 AGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLD 471 (697)
Q Consensus 394 aGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~~~~a~~~L~~lgald 471 (697)
+||.++|.|+++.+...|+. +..+..||+.+.++.+..|.+|.+....+..| ..+.||+..++..+-..|..++++|
T Consensus 759 ~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld 837 (1282)
T KOG0921|consen 759 AGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALD 837 (1282)
T ss_pred CceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhh
Confidence 99999999999999999999 99999999999999999999998876666555 5689999999999999999999999
Q ss_pred CCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccccccccCcchhHHHHHHHHhhccCC-C-----c
Q 005436 472 DDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAE-G-----D 545 (697)
Q Consensus 472 ~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~-~-----D 545 (697)
.++.+| |+|+.++++|++|.++|+++.+..++|..-++.+|+.+|...+|..-..........++.|++.. + |
T Consensus 838 ~n~elt-~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~ 916 (1282)
T KOG0921|consen 838 ANDELT-PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIV 916 (1282)
T ss_pred ccCccc-chhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhh
Confidence 999999 89999999999999999999999999999999999999988776643333333333344454432 4 5
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCccc----------CCCcchHHHHHHHHHhhc
Q 005436 546 HVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM----------KSCESDMQVVRKAVTAGF 615 (697)
Q Consensus 546 ~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~----------~~~~~~~~~i~~~l~~g~ 615 (697)
|.+.+..|+.|..+-...+||.+..++...|+.....+.|++..|+.++++- +..+.+...++..|+.++
T Consensus 917 ~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~l 996 (1282)
T KOG0921|consen 917 SVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMAL 996 (1282)
T ss_pred hhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhc
Confidence 5555555555555544688999999999999999999999999999766543 112233556778899999
Q ss_pred ccceeeeccccCCccEEEeeCCeeEEECCCCCCC-------CCCCcEEEEEeecccchhhcccccccCHHHHHhHccccc
Q 005436 616 FANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLF-------RVNPKWVIYHSLVSTDRQYMRNVISIDPSWLLEVAPHFY 688 (697)
Q Consensus 616 ~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~-------~~~~~~vv~~e~~~t~~~~ir~vt~i~~~wl~~~~~~~~ 688 (697)
|+|+|++. .+.+-.+...+ ...||-.|++. +-..+|+||.|+++|...-.+..|-|+|-.|+.|+.+-.
T Consensus 997 ypn~~~y~---ekrkvLtTe~~-~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKV 1072 (1282)
T KOG0921|consen 997 YPNVAYYV---EKRKVLTTEQS-SALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKV 1072 (1282)
T ss_pred CCccceec---cceeEEeecch-hhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhc
Confidence 99999887 44444444444 67788877763 123589999999999998899999999999999887655
Q ss_pred c
Q 005436 689 Q 689 (697)
Q Consensus 689 ~ 689 (697)
+
T Consensus 1073 q 1073 (1282)
T KOG0921|consen 1073 Q 1073 (1282)
T ss_pred c
Confidence 3
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.2e-54 Score=477.27 Aligned_cols=394 Identities=18% Similarity=0.238 Sum_probs=294.1
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc-----cc---------CCCeEEEEECccHHHHHHHHHHHHHH
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-----WA---------DGGRVIACTQPRRLAVQAVASRVAEE 118 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~-----~~---------~~~~~Ivv~p~r~l~~~~~~~~~~~~ 118 (697)
..|+++++.+.+++++|++|+||||||+++||++++.. +. ...++++++|+ +-++.++..++.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr-reLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR-VALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH-HHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999987531 11 12345555555 54555566666665
Q ss_pred hCCc------ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 005436 119 MGVK------VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (697)
Q Consensus 119 ~~~~------~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (697)
.|.. +....|..............+|+++|++. ..+.+.++++|||||||||+..+|.++.+++.+..
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~ 319 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHID 319 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhh
Confidence 5432 22223322110001111146799999763 22357899999999999999999999998886654
Q ss_pred hCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce-eeeEEEecCCCc-----chHHHHHH
Q 005436 193 CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHYVEEPV-----SDYVQAAV 264 (697)
Q Consensus 193 ~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~ 264 (697)
.. .|+++||||+ +.+.+.+||++.. .+.++++. ++++.+|..... .++.....
T Consensus 320 ~~--rq~ILmSATl~~dv~~l~~~~~~p~-----------------~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 320 KI--RSLFLMTATLEDDRDRIKEFFPNPA-----------------FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred hc--CEEEEEccCCcHhHHHHHHHhcCCc-----------------EEEeCCCcCCCeEEEEeecCcccccchhhhHHHH
Confidence 32 3899999999 4567888887554 77888875 899998875432 12222222
Q ss_pred HHHHHHHh---cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC-CCCCcEEEE
Q 005436 265 STVLLIHD---KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT-PRGKRKVVI 340 (697)
Q Consensus 265 ~~~~~~~~---~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f-~~g~~kilv 340 (697)
..+...+. ...++++|||||++++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++|||
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILV 451 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIII 451 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEe
Confidence 22222221 1245789999999999999999997652 3688999999999864 344444 689999999
Q ss_pred ecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCCCC
Q 005436 341 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGI 420 (697)
Q Consensus 341 aT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~ 420 (697)
|||++|+|||||+|++|||+|+.+.+. +..+. ..|+|+++|.||+|||||.++|.||+||++++.. +.
T Consensus 452 ATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI 519 (675)
T PHA02653 452 STPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PI 519 (675)
T ss_pred ccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HH
Confidence 999999999999999999999877653 33333 3489999999999999999999999999998741 13
Q ss_pred CcccccchhHHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHh--hcccccCCCChhhHHHHH
Q 005436 421 PEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPT--GFQVAEIPLEPMISKMIL 498 (697)
Q Consensus 421 pei~~~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~l--G~~~~~~pl~p~~~~~l~ 498 (697)
+++...+|.+++|+++++|++.. .+.|++||+.+++..|++.|..+||+|+ ++| .| |+.|+.+ +.||+++
T Consensus 520 ~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~-~l~~~~~~~~~----~~~k~~~ 591 (675)
T PHA02653 520 KRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWY-EILSNYYVNML----EYAKIYV 591 (675)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhh-hhhccccHHHH----HHhHHHh
Confidence 33333448999999999999654 4559999999999999999999998755 799 69 9999998 9999999
Q ss_pred hhc
Q 005436 499 SSN 501 (697)
Q Consensus 499 ~~~ 501 (697)
.|.
T Consensus 592 ~g~ 594 (675)
T PHA02653 592 KGG 594 (675)
T ss_pred ccc
Confidence 874
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-43 Score=404.78 Aligned_cols=443 Identities=17% Similarity=0.165 Sum_probs=293.3
Q ss_pred CCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH
Q 005436 30 SSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 30 ~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
++++++......+.+ ....++++|.++++.+.++++++++||||||||.+....+.+.. ..++++|+++|+++|+.|
T Consensus 4 ~~~~l~~~~~~~~~~--~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~q 80 (674)
T PRK01172 4 SDLGYDDEFLNLFTG--NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAME 80 (674)
T ss_pred hhcCCCHHHHHHHhh--CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHHH
Confidence 344555544433333 34457999999999999999999999999999987776666543 245678999999999988
Q ss_pred HHHHHHH-HHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHHH
Q 005436 110 AVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLG 185 (697)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~l~~ 185 (697)
...+.-. ...|..++..+|...... .... ..+|+|+||+.+...+.+++. +.++++||+||+|..+- ....+..
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~~~-~~~~-~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ 158 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDDPP-DFIK-RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLET 158 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCCCh-hhhc-cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHH
Confidence 5544211 234666666665321111 1112 579999999999888776655 89999999999996531 2234555
Q ss_pred HHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHH
Q 005436 186 LLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (697)
Q Consensus 186 ~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (697)
++.++...+++.|+|+||||+ |.+.+++|++........++++. .+.+. +....+ .+...... ....
T Consensus 159 ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl-------~~~i~---~~~~~~-~~~~~~~~-~~~~ 226 (674)
T PRK01172 159 VLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPL-------KLGIL---YRKRLI-LDGYERSQ-VDIN 226 (674)
T ss_pred HHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCe-------EEEEE---ecCeee-eccccccc-ccHH
Confidence 666666667889999999999 88999999976543222221111 00000 000011 11110000 0011
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC----------------CCCCeEEEEecCCCCHHHHhhcc
Q 005436 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------NSSGLIILPLYSGLSRAEQEQVF 328 (697)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~----------------~~~~~~v~~lh~~l~~~~r~~v~ 328 (697)
..+.... ..++++||||+++++++.+++.|.+....... ......+.+|||+|++++|..++
T Consensus 227 ~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 227 SLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 1122211 35688999999999999999999776432110 00013588999999999999999
Q ss_pred CCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCC---CcEEEEc
Q 005436 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRL 405 (697)
Q Consensus 329 ~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~---~G~~~~l 405 (697)
+.|++|.++|||||+++++|+|+|+..+||+ +. +.|+.. ...++|..+|.||+|||||.+ .|.++.+
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 9999999999999999999999999877775 22 223321 123789999999999999983 6777766
Q ss_pred cC-h---hHhhhhCCCCCCCcccccc------hhHHHHHHHHcCC----CCccCC---CCC--CCCC---HHHHHHHHHH
Q 005436 406 YT-E---EYFVKEIPAEGIPEMQRSN------LVSCVIQLKALGI----DNILGF---DWP--ASPP---PEAMIRALEV 463 (697)
Q Consensus 406 ~~-~---~~~~~~~~~~~~pei~~~~------l~~~~L~l~~~~~----~~~~~~---~~~--~~p~---~~~~~~a~~~ 463 (697)
.. + +.+...+...+.| ..+. +...+|...+.|. +++.+| .|+ ..++ .+.++.+++.
T Consensus 375 ~~~~~~~~~~~~~l~~~~~p--i~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~ 452 (674)
T PRK01172 375 AASPASYDAAKKYLSGEPEP--VISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKF 452 (674)
T ss_pred ecCcccHHHHHHHHcCCCCc--eeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHH
Confidence 43 2 2233323222222 2221 2222344455543 333333 333 3322 5678999999
Q ss_pred HHHcCCccCCC--CCChHhhcccccCCCChhhHHHHHhhcccC
Q 005436 464 LYSLGVLDDDA--KLTSPTGFQVAEIPLEPMISKMILSSNELG 504 (697)
Q Consensus 464 L~~lgald~~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~ 504 (697)
|...|+|++++ ..| ++|++++++|++|..++.+..+....
T Consensus 453 L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 453 LKENGFIKGDVTLRAT-RLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HHHCCCcccCCcEeEC-HHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 99999998654 568 79999999999999999998877654
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-42 Score=397.46 Aligned_cols=447 Identities=23% Similarity=0.229 Sum_probs=301.1
Q ss_pred CCCCCccchhhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH
Q 005436 31 SASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 31 ~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
+++++......+.+ +.---+++.|.++++. +.++++++++||||||||......++... .+++++||++|+++|+.|
T Consensus 5 ~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q 82 (737)
T PRK02362 5 ELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASE 82 (737)
T ss_pred hcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHH
Confidence 34444433333332 2233478899998887 78899999999999999966554444332 256789999999999998
Q ss_pred HHHHHHH-HHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCC--cChhHHHH
Q 005436 110 AVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERS--ISTDILLG 185 (697)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~--~~~d~l~~ 185 (697)
.+.+.-. ...|.+++..+|....... ... ..+|+|+||+.+...+.+.. ++.++++|||||+|..+ .....+..
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~~~-~l~-~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~ 160 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSRDE-WLG-DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEV 160 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCcccc-ccC-CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHH
Confidence 6655321 1237777777773322111 122 57899999999988776543 48899999999999432 12234555
Q ss_pred HHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc-eeeeEEEecCCCcchHHHHH
Q 005436 186 LLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVEEPVSDYVQAA 263 (697)
Q Consensus 186 ~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 263 (697)
++.++....++.|+|++|||+ |.+.+++|++.......+++++.... +..... .++........... ...
T Consensus 161 il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~-----v~~~~~~~~~~~~~~~~~~~~---~~~ 232 (737)
T PRK02362 161 TLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREG-----VFYGGAIHFDDSQREVEVPSK---DDT 232 (737)
T ss_pred HHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeee-----EecCCeeccccccccCCCccc---hHH
Confidence 666666667889999999999 88999999986554444433322110 000000 00000011111111 122
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc----------------cC-----------CCCCeEEEEec
Q 005436 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS----------------KK-----------NSSGLIILPLY 316 (697)
Q Consensus 264 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~----------------~~-----------~~~~~~v~~lh 316 (697)
...+.... ..++++||||+++++++.+++.|....... .. ......+.+||
T Consensus 233 ~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 23333332 256889999999999999999887653210 00 00024689999
Q ss_pred CCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCC
Q 005436 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (697)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR 396 (697)
|+|++++|..+++.|++|.++|||||+++++|+|+|++++||+. ...||+..+. .|++..+|.||+|||||
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGR 381 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999963 3457765443 38999999999999999
Q ss_pred C---CCcEEEEccChh-----HhhhhCCCCCCCcccc------cchhHHHHHHHHcCCC----CccCC---CCCCCC---
Q 005436 397 V---RPGKCYRLYTEE-----YFVKEIPAEGIPEMQR------SNLVSCVIQLKALGID----NILGF---DWPASP--- 452 (697)
Q Consensus 397 ~---~~G~~~~l~~~~-----~~~~~~~~~~~pei~~------~~l~~~~L~l~~~~~~----~~~~~---~~~~~p--- 452 (697)
. ..|.|+.+.... .|+..+.. .|+-.. ..|...++...+.|.- ++..| .|+..+
T Consensus 382 ~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~ 459 (737)
T PRK02362 382 PGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDD 459 (737)
T ss_pred CCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccc
Confidence 8 349999998653 13332222 222222 2466667777766631 22111 332222
Q ss_pred ---CHHHHHHHHHHHHHcCCccCCCC---CChHhhcccccCCCChhhHHHHHhhccc
Q 005436 453 ---PPEAMIRALEVLYSLGVLDDDAK---LTSPTGFQVAEIPLEPMISKMILSSNEL 503 (697)
Q Consensus 453 ---~~~~~~~a~~~L~~lgald~~~~---lT~~lG~~~~~~pl~p~~~~~l~~~~~~ 503 (697)
..+.++.+++.|.+.|+|+.++. .| ++|++++.++++|..+..+..+...
T Consensus 460 ~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 460 TGRLERVVDDVLDFLERNGMIEEDGETLEAT-ELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred hHHHHHHHHHHHHHHHHCCCeeecCCeEeEC-hHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 23568999999999999987654 88 7999999999999999999887654
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-39 Score=374.51 Aligned_cols=455 Identities=17% Similarity=0.133 Sum_probs=289.6
Q ss_pred CCCCCccchhhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH
Q 005436 31 SASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 31 ~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
.++++......+.+ +.---.++.|.+++.. +.+++++++++|||||||......+.......++++|+++|+++|+.|
T Consensus 5 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q 83 (720)
T PRK00254 5 ELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEE 83 (720)
T ss_pred HcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 34455544333333 3333477889888875 789999999999999999655444444333356789999999999988
Q ss_pred HHHHHHH-HHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcC--hhHHHH
Q 005436 110 AVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSIS--TDILLG 185 (697)
Q Consensus 110 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~--~d~l~~ 185 (697)
.+...-. ...|.+++..+|..... ..... .++|+|+||+.+...+... .+++++++||+||+|..+.. ...+..
T Consensus 84 ~~~~~~~~~~~g~~v~~~~Gd~~~~-~~~~~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~ 161 (720)
T PRK00254 84 KYREFKDWEKLGLRVAMTTGDYDST-DEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEM 161 (720)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCCc-hhhhc-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHH
Confidence 6644211 23567777666632211 11122 5799999999998877654 35899999999999943311 112222
Q ss_pred HHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHH
Q 005436 186 LLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (697)
Q Consensus 186 ~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (697)
++ .+...+.|+|++|||+ |.+.+++|++........+++.... .+...+ ...+.......+.....
T Consensus 162 il---~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~-----~~~~~~-----~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 162 IL---THMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRK-----GVFYQG-----FLFWEDGKIERFPNSWE 228 (720)
T ss_pred HH---HhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCccee-----eEecCC-----eeeccCcchhcchHHHH
Confidence 22 2345678999999999 8899999997654332222221100 001111 01111111111111122
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc------------------C------CCCCeEEEEecCCCC
Q 005436 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK------------------K------NSSGLIILPLYSGLS 320 (697)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~------------------~------~~~~~~v~~lh~~l~ 320 (697)
..+..... .++++||||++++.++.++..|........ . ......|.+|||+|+
T Consensus 229 ~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 229 SLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 22223222 467899999999999998877765321100 0 001235999999999
Q ss_pred HHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---
Q 005436 321 RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--- 397 (697)
Q Consensus 321 ~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~--- 397 (697)
+++|..+++.|++|.++|||||+++++|||+|++++||... ..|+ ..++ .+.+..+|.||+|||||.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcC
Confidence 99999999999999999999999999999999999999633 2343 1122 256678999999999996
Q ss_pred CCcEEEEccChhH----hhhhCCCCCCCcccc------cchhHHHHHHHHcC-CCCcc--------CCCCCCCCC----H
Q 005436 398 RPGKCYRLYTEEY----FVKEIPAEGIPEMQR------SNLVSCVIQLKALG-IDNIL--------GFDWPASPP----P 454 (697)
Q Consensus 398 ~~G~~~~l~~~~~----~~~~~~~~~~pei~~------~~l~~~~L~l~~~~-~~~~~--------~~~~~~~p~----~ 454 (697)
..|.++.+.+.+. ++..+. ..||-+. ..|...++.....+ +.+.. .|.+...|+ .
T Consensus 377 ~~G~~ii~~~~~~~~~~~~~~~~--~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~ 454 (720)
T PRK00254 377 EVGEAIIVATTEEPSKLMERYIF--GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLE 454 (720)
T ss_pred CCceEEEEecCcchHHHHHHHHh--CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHH
Confidence 5799998886432 333211 1222211 23444555555554 22211 111222233 3
Q ss_pred HHHHHHHHHHHHcCCccCC--C--CCChHhhcccccCCCChhhHHHHHhhccc----CChHHHHHHHHHh
Q 005436 455 EAMIRALEVLYSLGVLDDD--A--KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVL 516 (697)
Q Consensus 455 ~~~~~a~~~L~~lgald~~--~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~----~c~~~~~~i~a~l 516 (697)
+.++.+++.|.+.|+|+.+ + ..| ++|++++.++++|..++.+..+..- .....++.+.+..
T Consensus 455 ~~v~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 455 EKAKEIVYFLLENEFIDIDLEDRFIPL-PLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred HHHHHHHHHHHHCCCeEEcCCCCEeeC-hHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 5678899999999999643 3 468 8999999999999999998876542 2344555555443
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=344.47 Aligned_cols=340 Identities=18% Similarity=0.236 Sum_probs=250.8
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc------ccCCCeEEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGRVIA 99 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~------~~~~~~~Iv 99 (697)
.|+.++++......++...-.-|. ..|...+..+..+++++..|.|||||| |++|.+..... ...+..+++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~Pt-pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPT-PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCc-hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 667777777766555555544443 556667777889999999999999999 89998776543 123456899
Q ss_pred EECccHHHHHHHH--HHHHHHhCCcceeEEeeEeec-CCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 005436 100 CTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (697)
Q Consensus 100 v~p~r~l~~~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~He 175 (697)
++|||+||.|-.. ..+...++.+..+..|..... +........+|+|+|||+|...+..+.. ++++.++|+|||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 9999999988433 334444444455566632221 1112222689999999999999988776 9999999999999
Q ss_pred CCcChhHHHHHHHHHHHh-CCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc-----eeee
Q 005436 176 RSISTDILLGLLKKIQRC-RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-----GFNV 247 (697)
Q Consensus 176 r~~~~d~l~~~l~~~~~~-~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v 247 (697)
|+++.+|-..+.+.+... +++.+.++.|||.+. ..+++-|...+. .+.+-+. ...+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~----------------~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPI----------------QINVGNKKELKANHNI 313 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCce----------------EEEecchhhhhhhcch
Confidence 899999888888877777 566689999999944 455544433432 1221111 1111
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
........ .......+..++........+++||||.+++.|++++..+... ++.+..+||+.++.+|..+
T Consensus 314 ~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 314 RQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHH
Confidence 11111111 1112223333333333567889999999999999999999765 6889999999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEcc
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~ 406 (697)
++.|++|+..||||||+|++|+|||+|++||++++ |-+..+|+||+||+||. +.|.+|.++
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999776 77888888999999997 889999999
Q ss_pred ChhHhhh
Q 005436 407 TEEYFVK 413 (697)
Q Consensus 407 ~~~~~~~ 413 (697)
+...+..
T Consensus 446 t~~~~~~ 452 (519)
T KOG0331|consen 446 TSDNAKL 452 (519)
T ss_pred eHHHHHH
Confidence 9887654
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-41 Score=328.33 Aligned_cols=334 Identities=19% Similarity=0.218 Sum_probs=248.9
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+|.++-.++....+.+...-..|. ..|.+.+..+.+++++|..|.|||||| |.+|.+-......+...++|++|+|+
T Consensus 62 sf~dLgv~~~L~~ac~~l~~~~PT-~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRE 140 (476)
T KOG0330|consen 62 SFADLGVHPELLEACQELGWKKPT-KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRE 140 (476)
T ss_pred chhhcCcCHHHHHHHHHhCcCCCc-hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHH
Confidence 455566666555555555444454 556667777888999999999999999 77886533222223456899999999
Q ss_pred HHHH--HHHHHHHHHhCCcceeEEeeEeecC-C-cCCCCCceEEEechHHHHHHHhcC-CC-CCCCcEEEEeCCCcCCcC
Q 005436 106 LAVQ--AVASRVAEEMGVKVGEEVGYTIRFE-D-FTNKDLTAIKFLTDGVLLREMMDD-PL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 106 l~~~--~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~I~v~T~~~Ll~~l~~~-~~-l~~~~~iIiDE~Her~~~ 179 (697)
|+.| +..+.+....|.++...+|...... . .... .++|+|+|||.|.+++.+. .+ +..++++|+|||+ |.++
T Consensus 141 LA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd 218 (476)
T KOG0330|consen 141 LAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLD 218 (476)
T ss_pred HHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhh
Confidence 9988 4455565667788888888543221 1 2223 7999999999999999843 33 8999999999999 8999
Q ss_pred hhHHHHHHHHHHHhCCCceEEEeccccc--HHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---eeEEEecCC
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEE 254 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~ 254 (697)
.||...+-+.+.....+.+.+++|||++ ...+..---..+ ..+.+..... .+...|+..
T Consensus 219 ~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p----------------~~v~~s~ky~tv~~lkQ~ylfv 282 (476)
T KOG0330|consen 219 MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP----------------VKVAVSSKYQTVDHLKQTYLFV 282 (476)
T ss_pred hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC----------------eEEeccchhcchHHhhhheEec
Confidence 9998887777777788999999999994 444442211111 1222222211 233444433
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
+..+... .++.+.....++++||||++...+..++-.|+.. ++...++||.|+++.|...++.|++|
T Consensus 283 ~~k~K~~----yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 283 PGKDKDT----YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred cccccch----hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhcc
Confidence 3222111 1223333445688999999999999999998776 89999999999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
.+.||+||+++++|+|+|.|++|||+++ |.+..+|+||+||+||. ++|+++.|++..+.
T Consensus 350 ~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 350 ARSILVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred CCcEEEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 9999999999999999999999999777 88889999999999999 89999999998443
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.8e-40 Score=358.87 Aligned_cols=338 Identities=18% Similarity=0.195 Sum_probs=241.7
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhccccCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~--lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
.+|.+++++......+.+..-. ..++.|.++++.+.++++++++||||||||.. +|.+-.........++++++|+|
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~-~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYT-EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 4577777777666666554332 25578999999999999999999999999944 44332211111234689999999
Q ss_pred HHHHHHHH--HHHHHHh-CCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 105 RLAVQAVA--SRVAEEM-GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 105 ~l~~~~~~--~~~~~~~-~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
+|+.|... +.+.... +..+...+|....... ......++|+|+||+.|.+.+..... +.++++||+|||| +..+
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhC
Confidence 99987433 2333322 5566555553211111 11123689999999999998876654 8999999999999 4555
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc--ceeeeEEEecCCC
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEP 255 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 255 (697)
..+...+...+....++.+++++|||++. ..+...+...+. .+.+.. ....++..+....
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~i~~~~~~~~ 225 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV----------------EVKVESTHDLPAIEQRFYEVS 225 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE----------------EEEECcCCCCCCeeEEEEEeC
Confidence 55555555555556677899999999944 344444433221 222221 1122334443333
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC
Q 005436 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (697)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (697)
..+ ....+..+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+
T Consensus 226 ~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~ 292 (460)
T PRK11776 226 PDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRS 292 (460)
T ss_pred cHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 222 2333344444456678999999999999999999765 788999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 336 ~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
.+|||||+++++|+|+|++++||++++ |.+..+|+||+||+||. ..|.||.++++++...
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQR 353 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHHH
Confidence 999999999999999999999999877 77889999999999999 7899999999876433
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-39 Score=357.09 Aligned_cols=338 Identities=20% Similarity=0.236 Sum_probs=234.6
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc-----ccCCCeEEEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIAC 100 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~-----~~~~~~~Ivv 100 (697)
+|..+.+++.....+.+..-. ..+..|.+.+..+.+++++|++|||||||| +++|.+..... ...+..+|++
T Consensus 131 ~f~~~~l~~~l~~~l~~~g~~-~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL 209 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAGFT-EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVL 209 (545)
T ss_pred CHhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 455555665554445443322 356788888999999999999999999999 56776544221 1124568999
Q ss_pred ECccHHHHHHH--HHHHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 005436 101 TQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (697)
Q Consensus 101 ~p~r~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her 176 (697)
+|+|+|+.|.. .+.+....+.++....|....... .......+|+|+||+.|++.+..+.. +.++++||||||| +
T Consensus 210 ~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~ 288 (545)
T PTZ00110 210 APTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-R 288 (545)
T ss_pred CChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-h
Confidence 99999998733 333433444454444442211111 11112578999999999999877654 8999999999999 6
Q ss_pred CcChhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhh-cCcCCCCCcccccCCCCCCcEEEeccc----eeeeEE
Q 005436 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH-ARKGRRGLEGVELVPRLEPAILSVEGR----GFNVQI 249 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ 249 (697)
..+..+...+.+.+...+++.+++++|||++. ..+.+.+. ..+. .+.+... ...+..
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v----------------~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPV----------------HVNVGSLDLTACHNIKQ 352 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCE----------------EEEECCCccccCCCeeE
Confidence 66666666665555567788999999999954 34444332 2221 1111000 011111
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccC
Q 005436 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (697)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~ 329 (697)
.+......+........+..+. ...+++||||++++.++.+++.|... ++.+..+||++++++|..+++
T Consensus 353 ~~~~~~~~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 353 EVFVVEEHEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred EEEEEechhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHH
Confidence 1111111111111222221111 15678999999999999999999754 678899999999999999999
Q ss_pred CCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccCh
Q 005436 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (697)
Q Consensus 330 ~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~ 408 (697)
.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. .+|.||.++++
T Consensus 422 ~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~ 483 (545)
T PTZ00110 422 EFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTP 483 (545)
T ss_pred HHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECc
Confidence 999999999999999999999999999999777 78889999999999999 88999999997
Q ss_pred hHhh
Q 005436 409 EYFV 412 (697)
Q Consensus 409 ~~~~ 412 (697)
++..
T Consensus 484 ~~~~ 487 (545)
T PTZ00110 484 DKYR 487 (545)
T ss_pred chHH
Confidence 7543
No 21
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.5e-39 Score=348.03 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=234.5
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hccc-----cCCCeEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGW-----ADGGRVI 98 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~--~~~~-----~~~~~~I 98 (697)
+|.+++++......+.+..-.- ..+.|.+++..+.++++++++|||||||| +++|.+.. .... ..+.++|
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~-pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 9 KFSDFALHPQVVEALEKKGFHN-CTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CHhhCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 6778888887777776654433 45788888899999999999999999999 45554321 1111 1235689
Q ss_pred EEECccHHHHHHH--HHHHHHHhCCcceeEEeeEeec-CCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 005436 99 ACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (697)
Q Consensus 99 vv~p~r~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H 174 (697)
+++|+|+|+.|.. ...+....+.+++..+|..... +........+|+|+||+.|++.+..... +.++++|||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 9999999999843 4556666677776666632111 1111122579999999999998876655 8999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhC--CCceEEEecccccHHH--HH-HHhhcCcCCCCCcccccCCCCCCcEEEeccce---ee
Q 005436 175 ERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAKS--MS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FN 246 (697)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~--~~~~ii~~SAT~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 246 (697)
. ..+..+...+...+.... ...+.+++|||++... +. .++.... .+.+.... ..
T Consensus 168 ~-l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-----------------~i~v~~~~~~~~~ 229 (423)
T PRK04837 168 R-MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-----------------YVEVEPEQKTGHR 229 (423)
T ss_pred H-HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-----------------EEEEcCCCcCCCc
Confidence 3 444444443322222222 2445789999996542 22 2222111 22221111 11
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 005436 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (697)
+...+..... ......+..+......+++||||+++..++.+++.|... ++.+..+||+|++++|..
T Consensus 230 i~~~~~~~~~----~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 230 IKEELFYPSN----EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred eeEEEEeCCH----HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHH
Confidence 1111111111 122333344444445678999999999999999999764 788999999999999999
Q ss_pred ccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEc
Q 005436 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l 405 (697)
+++.|++|+++|||||+++++|||+|+|++||++++ |.|..+|.||+||+||. +.|.++.|
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEE
Confidence 999999999999999999999999999999999766 77788888999999999 78999999
Q ss_pred cChhHh
Q 005436 406 YTEEYF 411 (697)
Q Consensus 406 ~~~~~~ 411 (697)
+++++.
T Consensus 359 ~~~~~~ 364 (423)
T PRK04837 359 ACEEYA 364 (423)
T ss_pred eCHHHH
Confidence 998754
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.7e-38 Score=346.90 Aligned_cols=336 Identities=16% Similarity=0.211 Sum_probs=238.4
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hccc--cCCCeEEEEEC
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGW--ADGGRVIACTQ 102 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~--~~~~--~~~~~~Ivv~p 102 (697)
|..+.+.......+.+..- -..+.+|.+++.++.++++++++||||+||| +++|.+-. .... ..+.+++|++|
T Consensus 3 f~~l~l~~~l~~~l~~~g~-~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 3 FSELELDESLLEALQDKGY-TRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred HhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 4455555544444444322 3356789999999999999999999999999 44553322 2111 12357899999
Q ss_pred ccHHHHHH--HHHHHHHHhCCcceeEEeeEeecC--CcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 005436 103 PRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (697)
Q Consensus 103 ~r~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (697)
+++|+.|. ....++...+..++..+|...... ..... +.+|+|+||+.|++.+....+ +.++++||||||| +.
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HH
Confidence 99999874 344566667777777776322111 11223 678999999999999877665 8899999999999 45
Q ss_pred cChhHHHHHHHHHHHhCCCceEEEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEe
Q 005436 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (697)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (697)
.+..+...+.......+...+++++|||++...+. .++...+. .+...... ..+...+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------------EVEAEPSRRERKKIHQWY 223 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------------EEEecCCcccccCceEEE
Confidence 55444444444344455667899999999654444 33332221 11111110 1122222
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
..... .......+..+......+++||||+++++++.+++.|... ++.+..+||+|++.+|..+++.|
T Consensus 224 ~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 224 YRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred EEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHH
Confidence 21111 1223344444555556788999999999999999999764 78899999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
++|+++|||||+++++|+|+|++++||++++ |.|...|+||+||+||. ..|.++.+++..+
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHH
Confidence 9999999999999999999999999999776 78889999999999998 7899999998776
Q ss_pred hhh
Q 005436 411 FVK 413 (697)
Q Consensus 411 ~~~ 413 (697)
+..
T Consensus 354 ~~~ 356 (434)
T PRK11192 354 HLL 356 (434)
T ss_pred HHH
Confidence 644
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-38 Score=347.76 Aligned_cols=335 Identities=17% Similarity=0.181 Sum_probs=234.5
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc--cc----CCCeEEEE
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG--WA----DGGRVIAC 100 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~--~~----~~~~~Ivv 100 (697)
|..+.++......+.+..-. -.++.|.++++.+.++++++++|||||||| +++|.+-.... .. ...++|++
T Consensus 3 f~~l~l~~~l~~~l~~~g~~-~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYR-EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 55666666665556554333 356788889999999999999999999999 55554432111 00 12368999
Q ss_pred ECccHHHHHHHHH--HHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 005436 101 TQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (697)
Q Consensus 101 ~p~r~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her 176 (697)
+|+++|+.|.... .+....+......+|....... .......+|+|+||+.|+..+..... ++++++||||||| +
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-R 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-H
Confidence 9999999874332 3344445555555553211111 11122689999999999998876654 8999999999999 4
Q ss_pred CcChhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEe
Q 005436 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (697)
..+..+...+...+.....+.+++++|||++. ..+...+...+. .+.+..+. ..+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~~i~~~~ 224 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL----------------EIEVARRNTASEQVTQHV 224 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe----------------EEEEecccccccceeEEE
Confidence 55555555544444445667889999999954 344443332221 12221111 1122222
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
...... .....+..+.......++||||+++.+++.+++.|... ++.+..+||+|++++|.++++.|
T Consensus 225 ~~~~~~----~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F 291 (456)
T PRK10590 225 HFVDKK----RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADF 291 (456)
T ss_pred EEcCHH----HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHH
Confidence 111111 11223333444445678999999999999999999764 78899999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+|||||. ..|.++.++..++
T Consensus 292 ~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 292 KSGDIRVLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred HcCCCcEEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 9999999999999999999999999999777 78889999999999999 7899999998765
Q ss_pred hh
Q 005436 411 FV 412 (697)
Q Consensus 411 ~~ 412 (697)
..
T Consensus 354 ~~ 355 (456)
T PRK10590 354 HK 355 (456)
T ss_pred HH
Confidence 43
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-38 Score=344.97 Aligned_cols=341 Identities=16% Similarity=0.192 Sum_probs=238.0
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhccccCCCeEEEEEC
Q 005436 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~--lp~~l~~~~~~~~~~~Ivv~p 102 (697)
+..+|..+.++...+..+.+..-. -.++.|.+++..+.++++++++||||||||.. +|.+-.......+.++|+++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~-~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFE-KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 346788888888877777664333 35678888999999999999999999999944 343322111123457899999
Q ss_pred ccHHHHHHH--HHHHHHHhCCcceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 005436 103 PRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (697)
Q Consensus 103 ~r~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (697)
+++|+.|.. ...+....+..+...+|.....+.. ......+|+|+||+.|.+.+..+.. +.++++|||||+|.. .
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~-~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM-L 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-H
Confidence 999987732 2233334444544555532211111 1122478999999999988876654 899999999999942 2
Q ss_pred ChhHHHHHHHHHHHhCCCceEEEecccccHHH--HHHHhhcCcCCCCCcccccCCCCCCcEEEeccc---eeeeEEEecC
Q 005436 179 STDILLGLLKKIQRCRSDLRLIISSATIEAKS--MSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVE 253 (697)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 253 (697)
...+...+...+....++.+++++|||++.+. +...+...+. .+.+... ...+..++..
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 247 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK----------------RILVKKDELTLEGIRQFYVA 247 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE----------------EEEeCCCCcccCCceEEEEe
Confidence 33333334444445667899999999995532 2222222111 1111111 1112233333
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
....++ ....+..+.......++||||+++++++.+++.|.+. ++.+..+||+|++++|..+++.|++
T Consensus 248 ~~~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 248 VEKEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred cChHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 222222 2223333444445678999999999999999988764 6789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+++|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ..|.|+.++++++..
T Consensus 316 g~~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 316 GSTRVLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred CCCCEEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999776 77889999999999998 789999999987655
Q ss_pred h
Q 005436 413 K 413 (697)
Q Consensus 413 ~ 413 (697)
.
T Consensus 378 ~ 378 (401)
T PTZ00424 378 Q 378 (401)
T ss_pred H
Confidence 4
No 25
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-38 Score=345.06 Aligned_cols=337 Identities=20% Similarity=0.273 Sum_probs=257.0
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc-ccCCCe-EEEEE
Q 005436 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-WADGGR-VIACT 101 (697)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~-~~~~~~-~Ivv~ 101 (697)
+..|.++.++....+++.+..-.-| .+.|...+..+..++++++.|+|||||| |.+|.+-.... ...... +++++
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~p-t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEP-TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 3468888888888777777444444 4566777777778899999999999999 77786644221 111222 89999
Q ss_pred CccHHHHH--HHHHHHHHHh-CCcceeEEeeEeec-CC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 005436 102 QPRRLAVQ--AVASRVAEEM-GVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (697)
Q Consensus 102 p~r~l~~~--~~~~~~~~~~-~~~~~~~~g~~~~~-~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~He 175 (697)
|||+|+.| .....+.... +..+...+|..... +. .... ..+|+|+|||+|++++..... +.++.++|+|||+
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD- 184 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD- 184 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-
Confidence 99999998 5566677777 67777777743211 11 1222 599999999999999988755 9999999999999
Q ss_pred CCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec--c---ceeeeEEE
Q 005436 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE--G---RGFNVQIH 250 (697)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~~ 250 (697)
|.++..|...+-+.+.....+.+++++|||++. .+.++....... +..+.+. . ....++..
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~~~l~~-------------p~~i~v~~~~~~~~~~~i~q~ 250 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELARRYLND-------------PVEIEVSVEKLERTLKKIKQF 250 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHHHHccC-------------CcEEEEccccccccccCceEE
Confidence 788888888888777777778999999999966 354443322110 0123332 1 12334555
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCC
Q 005436 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (697)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (697)
|......+ .....+..+......+++||||+++..++.++..|... ++.+..+||+|++++|.++++.
T Consensus 251 ~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 251 YLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred EEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHH
Confidence 55444332 35555666666666678999999999999999999876 7999999999999999999999
Q ss_pred CCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 331 f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
|++|+.+|||||+++++|||||+|.+||++++ |.+...|+||+||+||. ..|.++.|+++.
T Consensus 319 F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 319 FKDGELRVLVATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred HHcCCCCEEEEechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 99999999999999999999999999999766 77788888999999999 899999999964
No 26
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=346.92 Aligned_cols=426 Identities=21% Similarity=0.231 Sum_probs=288.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHH-HHHhCCcceeEEee-E
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGVKVGEEVGY-T 130 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~-~~~~~~~~~~~~g~-~ 130 (697)
.+|..+...+.+++|++|++|||||||.++...+.......++++||++|+|+|+.+.+.+.- .+.+|.+++..+|. .
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~ 114 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYD 114 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcc
Confidence 344455555566799999999999999666666665544446789999999999998776643 36789999998883 2
Q ss_pred eecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHHHHHHHHHHhCCCceEEEecccc-
Q 005436 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSATI- 206 (697)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~l~~~l~~~~~~~~~~~ii~~SAT~- 206 (697)
... ..-. .++|+|+||+++...+++.+. +..+++|||||+|-.+- ....+..++.+........|++++|||+
T Consensus 115 ~~~--~~l~-~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlp 191 (766)
T COG1204 115 LDD--ERLA-RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLP 191 (766)
T ss_pred cch--hhhc-cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecC
Confidence 222 1122 689999999999988887665 88999999999993221 2236677777777777789999999999
Q ss_pred cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc----chHHHHHHHHHHHHHhcCCCCcEEEE
Q 005436 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----SDYVQAAVSTVLLIHDKEPPGDILVF 282 (697)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~iLVF 282 (697)
|.+++++|++.......+++++..... .+........... ..........+...+ ..++++|||
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v----------~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvF 259 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGV----------PYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVF 259 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCC----------ccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEE
Confidence 999999999998876666665543321 1111111111111 111122333333333 468899999
Q ss_pred cCCHHHHHHHHHHHHHHhhhc----------------cC------------CCCCeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 283 LTGQDDIDATIQLLTEEARTS----------------KK------------NSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 283 ~~~~~~~~~l~~~L~~~~~~~----------------~~------------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
|++++.+...++.+....... .. ..-...+.+||++|+.++|..+.+.|+.|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 999999999999998532110 00 00113489999999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEcc-C--h
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLY-T--E 408 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~-~--~ 408 (697)
+++||+||++++.|||+|.-++||. ...+||+..|+ .+++..++.||+|||||. .-|..+.+. + +
T Consensus 340 ~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~ 410 (766)
T COG1204 340 KIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDE 410 (766)
T ss_pred CceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccc
Confidence 9999999999999999998777773 34568874442 288999999999999998 345555444 2 2
Q ss_pred hHhhhhCCCCCCCcccccc------hhHHHHHHHHcCCC-Ccc---CC-------CCC--CCCCHHHHHHHHHHHHHcC-
Q 005436 409 EYFVKEIPAEGIPEMQRSN------LVSCVIQLKALGID-NIL---GF-------DWP--ASPPPEAMIRALEVLYSLG- 468 (697)
Q Consensus 409 ~~~~~~~~~~~~pei~~~~------l~~~~L~l~~~~~~-~~~---~~-------~~~--~~p~~~~~~~a~~~L~~lg- 468 (697)
..+.........||...+. +...++.+.+.+.. ... .| +.. .--....+..+++.|.+.+
T Consensus 411 ~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~ 490 (766)
T COG1204 411 LEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGL 490 (766)
T ss_pred hhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccc
Confidence 2222213334444442221 11111111111100 000 00 000 0123456788999999986
Q ss_pred CccCCC---CCChHhhcccccCCCChhhHHHHHhhccc
Q 005436 469 VLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL 503 (697)
Q Consensus 469 ald~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~ 503 (697)
.++... ..| .+|+.++++.++|..++.+......
T Consensus 491 ~~~~~~~~~~at-e~g~~~s~~yi~~~sa~~~~~~l~~ 527 (766)
T COG1204 491 ILDADWEALHAT-ELGKLVSRLYIDPESAKIFRDLLAE 527 (766)
T ss_pred eeeccccccchh-HHHHHhhhccCCHHHHHHHHHHHHH
Confidence 555332 578 6999999999999999998876543
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.7e-38 Score=347.99 Aligned_cols=337 Identities=18% Similarity=0.152 Sum_probs=229.7
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc-------ccCCCeEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-------WADGGRVI 98 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~-------~~~~~~~I 98 (697)
+|....++......+.+..- --.++.|.+.+..+.++++++++|||||||| +++|.+..... ...+..+|
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~-~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aL 200 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGY-EFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAM 200 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCC-CCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEE
Confidence 34445555554444443322 2356788888999999999999999999999 67776543211 11345789
Q ss_pred EEECccHHHHHH--HHHHHHHHhCCcceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 005436 99 ACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (697)
Q Consensus 99 vv~p~r~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H 174 (697)
+++|+|+|+.|. ..+.+.+..+......+|.....+.. ......+|+|+||+.|...+..... +.++++|||||||
T Consensus 201 IL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad 280 (518)
T PLN00206 201 VLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD 280 (518)
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH
Confidence 999999999863 23333333444444444432211111 1122579999999999998876554 8999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEE
Q 005436 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQI 249 (697)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~ 249 (697)
+..+..+...+ ..+....++.+++++|||++. +.+...+...+. .+.+.... ..+..
T Consensus 281 -~ml~~gf~~~i-~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~----------------~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 281 -CMLERGFRDQV-MQIFQALSQPQVLLFSATVSPEVEKFASSLAKDII----------------LISIGNPNRPNKAVKQ 342 (518)
T ss_pred -HHhhcchHHHH-HHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCE----------------EEEeCCCCCCCcceeE
Confidence 44444444333 333344467899999999943 455555543321 22221111 11121
Q ss_pred EecCCCcchHHHHHHHHHHHHHhc--CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 250 HYVEEPVSDYVQAAVSTVLLIHDK--EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
.+......+... .+..+... ...+++||||+++..++.+++.|... .++.+..+||++++++|..+
T Consensus 343 ~~~~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~i 410 (518)
T PLN00206 343 LAIWVETKQKKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREV 410 (518)
T ss_pred EEEeccchhHHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHH
Confidence 111111111111 12222211 22467999999999999999988653 26789999999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEcc
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~ 406 (697)
++.|++|+.+|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.++.++
T Consensus 411 l~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 411 MKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred HHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEE
Confidence 99999999999999999999999999999999777 78899999999999999 789999999
Q ss_pred ChhHhhh
Q 005436 407 TEEYFVK 413 (697)
Q Consensus 407 ~~~~~~~ 413 (697)
++++...
T Consensus 473 ~~~~~~~ 479 (518)
T PLN00206 473 NEEDRNL 479 (518)
T ss_pred chhHHHH
Confidence 9876443
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.4e-38 Score=344.38 Aligned_cols=333 Identities=19% Similarity=0.237 Sum_probs=229.4
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hcc-----ccCCCeEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAG-----WADGGRVI 98 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~--~~~-----~~~~~~~I 98 (697)
.|.++.++......+.+. .---.+++|.+++..+.+++++|+++||||||| +++|.+-. ... .....++|
T Consensus 88 ~f~~~~l~~~l~~~l~~~-g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 88 RFHDFNLAPELMHAIHDL-GFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CHhHCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 344445555444444442 223368999999999999999999999999999 55564422 111 01135789
Q ss_pred EEECccHHHHHHHH--HHHHHHhCCcceeEEeeEee---cCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeC
Q 005436 99 ACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDE 172 (697)
Q Consensus 99 vv~p~r~l~~~~~~--~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE 172 (697)
|++|+++|+.|... +.+....+..+...+|.... ....... ..+|+|+||++|+..+.... .++++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~-~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR-FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC-CCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999998543 33444556666666663211 1111122 68999999999998776544 489999999999
Q ss_pred CCcCCcChhHHHHHHHHHHHh---CCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---
Q 005436 173 AHERSISTDILLGLLKKIQRC---RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG--- 244 (697)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~~---~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 244 (697)
+|. ..+..+... ++++... ..+.+++++|||++. ..+.+.+...+. .+.+....
T Consensus 246 ah~-l~~~~~~~~-l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~ 307 (475)
T PRK01297 246 ADR-MLDMGFIPQ-VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA----------------IVEIEPENVAS 307 (475)
T ss_pred HHH-HHhcccHHH-HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE----------------EEEeccCcCCC
Confidence 994 333333332 2333332 235789999999843 334433332221 22111111
Q ss_pred eeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 005436 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (697)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (697)
..++.++......+ ....+..+.......++||||+++++++.+++.|... ++.+..+||+++.++|
T Consensus 308 ~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 308 DTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKR 374 (475)
T ss_pred CcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHH
Confidence 01111111111111 2223334444445678999999999999999998654 6788999999999999
Q ss_pred hhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEE
Q 005436 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (697)
Q Consensus 325 ~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~ 403 (697)
.++++.|++|+++|||||+++++|||+|++++||++|+ |.|..+|+||+|||||. ..|.++
T Consensus 375 ~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i 436 (475)
T PRK01297 375 IKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSI 436 (475)
T ss_pred HHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEE
Confidence 99999999999999999999999999999999999887 88999999999999999 789999
Q ss_pred EccChhHh
Q 005436 404 RLYTEEYF 411 (697)
Q Consensus 404 ~l~~~~~~ 411 (697)
.++++++.
T Consensus 437 ~~~~~~d~ 444 (475)
T PRK01297 437 SFAGEDDA 444 (475)
T ss_pred EEecHHHH
Confidence 99997643
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-38 Score=348.33 Aligned_cols=334 Identities=16% Similarity=0.218 Sum_probs=232.5
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHh--c-c----ccCCCeEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE--A-G----WADGGRVI 98 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~--~-~----~~~~~~~I 98 (697)
+|.++.+++.....+.+..-. -.++.|.+.+..+.++++++++|||||||| +++|.+-.. . . .....++|
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~-~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFT-RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 466777777666666555433 346788889999999999999999999999 445543211 1 0 01135789
Q ss_pred EEECccHHHHHHHHH--HHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCC
Q 005436 99 ACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEA 173 (697)
Q Consensus 99 vv~p~r~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~ 173 (697)
|++|+++|+.|.... .+....++.++..+|....... .......+|+|+||+.|++.+.... .+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999885433 3444456666666663211111 1112257899999999999887653 3788999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhC--CCceEEEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccce---e
Q 005436 174 HERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (697)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~--~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (697)
|. ..+..+...+...+.... .+.+++++|||++..... .++.... .+.+.... .
T Consensus 169 h~-lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-----------------~i~v~~~~~~~~ 230 (572)
T PRK04537 169 DR-MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-----------------KLVVETETITAA 230 (572)
T ss_pred HH-HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-----------------EEEecccccccc
Confidence 94 334444433322222222 267899999999653222 2222111 11111111 1
Q ss_pred eeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 005436 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (697)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (697)
.+...+..... ......+..+.......++||||+++..++.+++.|.+. ++.+..+||+|++.+|.
T Consensus 231 ~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~ 297 (572)
T PRK04537 231 RVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRE 297 (572)
T ss_pred ceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHH
Confidence 11222221111 122333444445556778999999999999999999765 78899999999999999
Q ss_pred hccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEE
Q 005436 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (697)
Q Consensus 326 ~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~ 404 (697)
++++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.|+.
T Consensus 298 ~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999776 78899999999999999 8899999
Q ss_pred ccChhHh
Q 005436 405 LYTEEYF 411 (697)
Q Consensus 405 l~~~~~~ 411 (697)
|+++.+.
T Consensus 360 ~~~~~~~ 366 (572)
T PRK04537 360 FACERYA 366 (572)
T ss_pred EecHHHH
Confidence 9987654
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-37 Score=346.81 Aligned_cols=335 Identities=18% Similarity=0.207 Sum_probs=236.3
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhccccCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+|.++.+++.....+.+. .--..+++|.+++..+.+++++|++||||||||. ++|.+-.......+.++||++|+++
T Consensus 7 ~f~~l~L~~~ll~al~~~-G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 7 TFADLGLKAPILEALNDL-GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 466777777776666553 2334677899999999999999999999999994 4443322111123457899999999
Q ss_pred HHHHHH--HHHHHHHh-CCcceeEEeeEeec-CCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 005436 106 LAVQAV--ASRVAEEM-GVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (697)
Q Consensus 106 l~~~~~--~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (697)
|+.|.. ...+...+ +..+...+|..... +.......++|+|+||+.+++.+..... ++++++|||||||+ .++.
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~ 164 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRM 164 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhhc
Confidence 988632 22233332 55555555532111 1111122689999999999999887665 89999999999995 3444
Q ss_pred hHHHHHHHHHHHhCCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEecCCC
Q 005436 181 DILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVEEP 255 (697)
Q Consensus 181 d~l~~~l~~~~~~~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 255 (697)
.+...+...+.......+++++|||++.. .+...+...+. .+.+.... ..+...|....
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~----------------~i~i~~~~~~~~~i~q~~~~v~ 228 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ----------------EVRIQSSVTTRPDISQSYWTVW 228 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe----------------EEEccCccccCCceEEEEEEec
Confidence 45555555555566778999999999543 33333322221 22221111 11222222222
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC
Q 005436 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (697)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (697)
..+ ....+..+........+||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|++|+
T Consensus 229 ~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~ 295 (629)
T PRK11634 229 GMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGR 295 (629)
T ss_pred hhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCC
Confidence 111 2223333334445678999999999999999999765 788999999999999999999999999
Q ss_pred cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 336 ~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. +.|.++.++++.+.
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999999766 77889999999999999 77999999987654
No 31
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.4e-37 Score=314.42 Aligned_cols=438 Identities=19% Similarity=0.181 Sum_probs=302.5
Q ss_pred CCCCCCccchhhHHHHhcCCCcHHHHHH-HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHH
Q 005436 30 SSASSIGYGYASIEKQRQRLPVYKYRTA-ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (697)
Q Consensus 30 ~~~~~~~~~~~~~~~~r~~lPi~~~q~~-i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~ 108 (697)
+.++++. .++.+.+.+..--+.+.|-- +-.-+.++++.+|+.+|+||||.+....-.......+++.++++|.-+||.
T Consensus 197 deLdipe-~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALAN 275 (830)
T COG1202 197 DELDIPE-KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALAN 275 (830)
T ss_pred cccCCcH-HHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhc
Confidence 3444544 34667776643333333433 334577899999999999999955444433334445788999999999999
Q ss_pred HHHHHHHH--HHhCCcceeEEeeE-eecCC----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCC-----cC
Q 005436 109 QAVASRVA--EEMGVKVGEEVGYT-IRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ER 176 (697)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~g~~-~~~~~----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~H-----er 176 (697)
|...++.. ..+|..+...+|.. ++... ..+..+.+|+|+|++-+...+.....+.+++.|||||+| ||
T Consensus 276 QKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 276 QKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred chHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhc
Confidence 96655433 45677777777732 22211 122237899999999988888888889999999999999 56
Q ss_pred CcChhHHHHHHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC
Q 005436 177 SISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP 255 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 255 (697)
+.. +.+++.++....++.|+|.+|||+ |++.+++.++.. .+..+.|+.|++.+..-..
T Consensus 356 G~R---LdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~------------------lV~y~~RPVplErHlvf~~ 414 (830)
T COG1202 356 GPR---LDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK------------------LVLYDERPVPLERHLVFAR 414 (830)
T ss_pred ccc---hhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe------------------eEeecCCCCChhHeeeeec
Confidence 654 445666666778899999999999 999999999865 4666777777775554332
Q ss_pred cc-h---HHHHHHHHHHH-HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCC
Q 005436 256 VS-D---YVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (697)
Q Consensus 256 ~~-~---~~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (697)
.. + .+...+..-+. .....-.|++|||++++..++.+++.|... ++.+.++|+||+..+|+.+...
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHH
Confidence 11 1 11111111111 122334699999999999999999999765 8999999999999999999999
Q ss_pred CCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccC
Q 005436 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYT 407 (697)
Q Consensus 331 f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~ 407 (697)
|.++++.++|+|..++.|||+|+-.+|+.+=. +-..|.|..+|.||.|||||. ..|++|.+..
T Consensus 486 F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa--------------MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLA--------------MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HhcCCcceEeehhhhhcCCCCchHHHHHHHHH--------------cccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 99999999999999999999998777765311 223499999999999999999 6799999987
Q ss_pred hh-HhhhhCCCC----------CCCccccc------chhHHHHHHHHcC----CCCccCCCCCCCCCHHHHHHHHHHHHH
Q 005436 408 EE-YFVKEIPAE----------GIPEMQRS------NLVSCVIQLKALG----IDNILGFDWPASPPPEAMIRALEVLYS 466 (697)
Q Consensus 408 ~~-~~~~~~~~~----------~~pei~~~------~l~~~~L~l~~~~----~~~~~~~~~~~~p~~~~~~~a~~~L~~ 466 (697)
+. .|...|... ..||-... .+++++-..-..+ ++.+.+..+ -+ .-..+.++..|+.
T Consensus 552 pg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~-g~--~~~~~k~l~~Lee 628 (830)
T COG1202 552 PGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLML-GA--AFDPKKALSKLEE 628 (830)
T ss_pred CChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhc-cc--cCCHHHHHHHHHh
Confidence 54 222212221 11222111 1233222111111 111111110 00 1225789999999
Q ss_pred cCCccCCC---CCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhcc
Q 005436 467 LGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (697)
Q Consensus 467 lgald~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~ 518 (697)
+|.|+.+| ++| +.|++++..-+.|.-|-.|-.+. ....+ .+.|++.|..
T Consensus 629 ~g~i~~~G~~v~~T-~yGrava~~Fl~p~~a~~Ir~~v-~~~~~-pl~i~~~l~p 680 (830)
T COG1202 629 YGMIKKKGNIVRPT-PYGRAVAMSFLGPSEAEFIREGV-LASMD-PLRIAAELEP 680 (830)
T ss_pred cCCeeccCCEeeec-cccceeEEeecCchHHHHHHHhh-hccCC-hHhHhhcccc
Confidence 99999776 689 89999999999999999988875 33333 4556665543
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.3e-36 Score=343.24 Aligned_cols=324 Identities=16% Similarity=0.173 Sum_probs=220.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH-HhCCcc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE-EMGVKV 123 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~-~~~~~~ 123 (697)
.--..+++|.+.++.+.+++++++++||||||| +++|.+-... ...+.++||++|+|+|+.|+......- ..+..+
T Consensus 33 g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 33 GIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred CCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 334689999999999999999999999999999 6677543321 123567899999999999866552111 124455
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-----CCCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHH----h
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-----PLLTKYSVIMVDEAHERS-ISTDILLGLLKKIQR----C 193 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-----~~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~----~ 193 (697)
+...|.....+.......++|+++||++|...+... ..++++++|||||+|... .....+..+++++.+ .
T Consensus 112 ~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~ 191 (742)
T TIGR03817 112 ATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARY 191 (742)
T ss_pred EEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhc
Confidence 555553322211111226899999999987544322 137899999999999532 111223333444332 3
Q ss_pred CCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceee-eEEEecCCC------------cchH
Q 005436 194 RSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN-VQIHYVEEP------------VSDY 259 (697)
Q Consensus 194 ~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~------------~~~~ 259 (697)
..+.|+|++|||+ +...+.+.+...+.. ++...+.... ....+.... ....
T Consensus 192 g~~~q~i~~SATi~n~~~~~~~l~g~~~~---------------~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~ 256 (742)
T TIGR03817 192 GASPVFVLASATTADPAAAASRLIGAPVV---------------AVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSA 256 (742)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHcCCCeE---------------EECCCCCCcCceEEEEecCCccccccccccccccch
Confidence 4578999999999 556566555433310 1111111100 111110000 0111
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
.......+..+.. .+.++||||+|++.++.++..|.+.+.... ...+..+..+||++++++|.++++.|++|++++|
T Consensus 257 ~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vL 333 (742)
T TIGR03817 257 SAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVD-PDLAERVAAYRAGYLPEDRRELERALRDGELLGV 333 (742)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-cccccchhheecCCCHHHHHHHHHHHHcCCceEE
Confidence 1223333333333 357899999999999999999887643221 1124578899999999999999999999999999
Q ss_pred EecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 340 vaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
|||+++++|||||++++||++|+ |.+.++|+||+|||||. ..|.++.+.+
T Consensus 334 VaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 334 ATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred EECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 99999999999999999999888 88999999999999999 7799998886
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.1e-36 Score=339.07 Aligned_cols=308 Identities=13% Similarity=0.148 Sum_probs=218.3
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
-..+.|.+++.++..++++++++|||+||| +++|.++. ++.+|||+|+++|+.+++.... ..++......
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~--~~GI~Aa~L~ 531 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLL--QANIPAASLS 531 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHH--hCCCeEEEEE
Confidence 467889999999999999999999999999 78886642 3568999999999987776643 2466655554
Q ss_pred eeEeecCC------cCC-CCCceEEEechHHHHH------HHhcCCCCCCCcEEEEeCCCcCCcC-hhHHHHHH--HHHH
Q 005436 128 GYTIRFED------FTN-KDLTAIKFLTDGVLLR------EMMDDPLLTKYSVIMVDEAHERSIS-TDILLGLL--KKIQ 191 (697)
Q Consensus 128 g~~~~~~~------~~~-~~~~~I~v~T~~~Ll~------~l~~~~~l~~~~~iIiDE~Her~~~-~d~l~~~l--~~~~ 191 (697)
|.....+. ... .+..+|+|+||+.|.. .+..-.....+++|||||||+.+-+ .+|...+. ..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 43211111 111 1268999999999752 2211112355899999999965432 24443332 2344
Q ss_pred HhCCCceEEEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHH
Q 005436 192 RCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (697)
Q Consensus 192 ~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (697)
...++.+++++|||++..... +.++... +.+...+.. ...++|...+.... ....+.
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~----------------~~vfr~Sf~-RpNL~y~Vv~k~kk---~le~L~ 671 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVN----------------CVVFRQSFN-RPNLWYSVVPKTKK---CLEDID 671 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCC----------------cEEeecccC-ccceEEEEeccchh---HHHHHH
Confidence 566788999999999665333 3332211 011111111 11222221111111 111222
Q ss_pred HHH-hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcccc
Q 005436 269 LIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (697)
Q Consensus 269 ~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~ 347 (697)
... ....++..||||.++++++.+++.|... ++.+.+|||+|++++|..+++.|..|+.+|||||+++++
T Consensus 672 ~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 672 KFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred HHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 222 2223567899999999999999999765 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 348 Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..++.
T Consensus 743 GIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 743 GINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred CCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 999999999999888 88999999999999999 789999999987664
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.7e-36 Score=326.63 Aligned_cols=311 Identities=16% Similarity=0.186 Sum_probs=215.6
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
.++.|.++++++.+++++++++||||||| +++|.+. .++.+||++|+++|+.+++... ...|.......|
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l--~~~gi~~~~l~~ 83 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQL--KASGIPATFLNS 83 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHH--HHcCCcEEEEeC
Confidence 45689999999999999999999999999 5677553 2356899999999998876552 345666544444
Q ss_pred eEeec------CCcCCCCCceEEEechHHHHHHH--hcCC-CCCCCcEEEEeCCCcCCcC-hhHHHH--HHHHHHHhCCC
Q 005436 129 YTIRF------EDFTNKDLTAIKFLTDGVLLREM--MDDP-LLTKYSVIMVDEAHERSIS-TDILLG--LLKKIQRCRSD 196 (697)
Q Consensus 129 ~~~~~------~~~~~~~~~~I~v~T~~~Ll~~l--~~~~-~l~~~~~iIiDE~Her~~~-~d~l~~--~l~~~~~~~~~ 196 (697)
..... .... .+..+|+|+||+.+.... .... ...++++|||||||..+-+ .++... .+..+....++
T Consensus 84 ~~~~~~~~~i~~~~~-~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 84 SQSKEQQKNVLTDLK-DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCCHHHHHHHHHHHh-cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCC
Confidence 22111 0111 225789999999875321 1111 3678999999999965422 223222 23334556688
Q ss_pred ceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 005436 197 LRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (697)
Q Consensus 197 ~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (697)
.+++++|||++.....+......... +.++........+....... ..+........+ ....++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~------------~~~~~~s~~r~nl~~~v~~~-~~~~~~~l~~~l---~~~~~~ 226 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKN------------PQIFCTSFDRPNLYYEVRRK-TPKILEDLLRFI---RKEFKG 226 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCC------------CcEEeCCCCCCCcEEEEEeC-CccHHHHHHHHH---HHhcCC
Confidence 99999999997654443332211000 00111111111111111111 112222222222 113345
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEE
Q 005436 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (697)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~ 356 (697)
..+||||+++++++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~ 297 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRF 297 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceE
Confidence 56799999999999999999765 788999999999999999999999999999999999999999999999
Q ss_pred EEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 357 VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
||++++ |.|..+|+||+|||||. .+|.|+.+|++.+...
T Consensus 298 VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 298 VIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred EEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 999777 77899999999999999 7899999999876654
No 35
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=309.61 Aligned_cols=337 Identities=20% Similarity=0.264 Sum_probs=264.8
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhccccC--CCeEEEE
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWAD--GGRVIAC 100 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~--l~~~~~~~--~~~~Ivv 100 (697)
..|.++|++..+...+.......| ...|.+.+....+|++++-.|-|||||| +++|.+ ++...|.. |-.+|++
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~-teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKM-TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccH-HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 368899999988777776655544 4555555666667788999999999999 888865 33444543 4468999
Q ss_pred ECccHHHHH--HHHHHHHHHhCCcceeEEeeE-eecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCc
Q 005436 101 TQPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHE 175 (697)
Q Consensus 101 ~p~r~l~~~--~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~He 175 (697)
+|||+||.| .+...+.+..+...|..+|.. ..++..... ..+|+|||||+|++++..++. -.++..+|+|||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD- 225 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD- 225 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-
Confidence 999999999 567788899999999988844 334433334 789999999999999998886 5778899999999
Q ss_pred CCcChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec-----cceeeeE
Q 005436 176 RSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-----GRGFNVQ 248 (697)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~ 248 (697)
|.+++.|-..+-..+....+..|.+++|||. ...++++.--..|. .+.+. +.+....
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~----------------~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV----------------YVSVHENAVAATPSNLQ 289 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc----------------EEEEeccccccChhhhh
Confidence 8888888766666666677888999999998 66677766433331 33332 1222344
Q ss_pred EEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhcc
Q 005436 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (697)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (697)
.+|.-.+..+ .+..++.........++|||+.|.+++..+++.+++. .+++.+..+||.|++..|..++
T Consensus 290 Q~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 290 QSYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred heEEEEehhh----HHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHH
Confidence 5555544444 4445555556667788999999999999999999876 3689999999999999999999
Q ss_pred CCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 329 ~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
..|-...--|++||+++++|+|+|.|++||..+. |.+..+|+||+||+.|. ..|.++.+.+
T Consensus 359 ~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 359 KKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred HHHHHhcceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 9999888899999999999999999999999665 88889999999999999 8899999988
Q ss_pred hhHh
Q 005436 408 EEYF 411 (697)
Q Consensus 408 ~~~~ 411 (697)
+.+.
T Consensus 421 psEe 424 (758)
T KOG0343|consen 421 PSEE 424 (758)
T ss_pred chhH
Confidence 7653
No 36
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=300.95 Aligned_cols=332 Identities=20% Similarity=0.253 Sum_probs=246.9
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH---hccccCCC--eEEEEECccHHHHH--HHHHHHHHH-hC
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK---EAGWADGG--RVIACTQPRRLAVQ--AVASRVAEE-MG 120 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~---~~~~~~~~--~~Ivv~p~r~l~~~--~~~~~~~~~-~~ 120 (697)
..+.|...+..+.+++++++.++|||||| +++|.+-. .....+.+ ..++++|||+|+.| +++.-+... .+
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 56778999999999999999999999999 88886522 22222233 46999999999998 555555544 56
Q ss_pred CcceeEEeeEeecCCcC--CCCCceEEEechHHHHHHHhcCCC---CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCC
Q 005436 121 VKVGEEVGYTIRFEDFT--NKDLTAIKFLTDGVLLREMMDDPL---LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS 195 (697)
Q Consensus 121 ~~~~~~~g~~~~~~~~~--~~~~~~I~v~T~~~Ll~~l~~~~~---l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~ 195 (697)
......+|...-.++.. ....++|+|+|||.|.+.+.+... +.++.++|+|||+ |.++..|...+-..+.....
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 77777888643333221 123788999999999999987432 4589999999999 88898888887777777777
Q ss_pred CceEEEeccccc--HHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---ee--eEEEecCCCcchHHHHHHHHHH
Q 005436 196 DLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FN--VQIHYVEEPVSDYVQAAVSTVL 268 (697)
Q Consensus 196 ~~~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~ 268 (697)
+.+.=++|||.+ .+++....-..++ -+.+.... .| +..+|...... .....++
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv----------------~V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv 247 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPV----------------RVSVKEKSKSATPSSLALEYLVCEAD----EKLSQLV 247 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCce----------------eeeecccccccCchhhcceeeEecHH----HHHHHHH
Confidence 888899999983 3444443322221 12221111 22 44555544332 2344555
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccc
Q 005436 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (697)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~G 348 (697)
++..+...+++|||.+|...++-....+.... ....+..+||.|...+|..+++.|.+..-.+++||+++++|
T Consensus 248 ~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 248 HLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 55566677899999999999999998887763 37889999999999999999999998888899999999999
Q ss_pred cCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC--hhHhhhhCCCCCCCcccc
Q 005436 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT--EEYFVKEIPAEGIPEMQR 425 (697)
Q Consensus 349 vdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~--~~~~~~~~~~~~~pei~~ 425 (697)
+|||+|++||+ ||| |...++|.||+||+||. +.|.++.+.. +++|-..|.-...|++.+
T Consensus 321 lDip~iD~VvQ--------~Dp----------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 321 LDIPGIDLVVQ--------FDP----------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred CCCCCceEEEe--------cCC----------CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 99999999999 454 56667777999999999 7787776665 556766566666677666
Q ss_pred cch
Q 005436 426 SNL 428 (697)
Q Consensus 426 ~~l 428 (697)
.+.
T Consensus 383 ~~~ 385 (567)
T KOG0345|consen 383 IDT 385 (567)
T ss_pred hcc
Confidence 543
No 37
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=305.13 Aligned_cols=333 Identities=19% Similarity=0.272 Sum_probs=251.7
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc---------ccCCC
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG---------WADGG 95 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~---------~~~~~ 95 (697)
+.|.-.++....+..+....-..|. +.|..++....+++++|..|.|||||| +++|+++.... ...+.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~ept-pIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPT-PIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCc-hHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 3555566777777666666666665 455666678889999999999999999 77776654321 12456
Q ss_pred eEEEEECccHHHHHH--HHHHHHHHhCCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEE
Q 005436 96 RVIACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMV 170 (697)
Q Consensus 96 ~~Ivv~p~r~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIi 170 (697)
..++++|+|+|+.|- -...+...+|+++...+|....-+. ..+. .+.|+++|||.|+..+-+..+ +.+..+||+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 789999999999883 3445777788888888886544443 2344 799999999999998877655 899999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHHhC-----------------------CC--ceEEEecccccH--HHHH-HHhhcCcCCC
Q 005436 171 DEAHERSISTDILLGLLKKIQRCR-----------------------SD--LRLIISSATIEA--KSMS-AFFHARKGRR 222 (697)
Q Consensus 171 DE~Her~~~~d~l~~~l~~~~~~~-----------------------~~--~~ii~~SAT~~~--~~~~-~~~~~~~~~~ 222 (697)
|||+ |.++..|-..+.+.+.... .+ .+.+.+|||+++ +.++ .||....
T Consensus 403 dead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv--- 478 (673)
T KOG0333|consen 403 DEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV--- 478 (673)
T ss_pred cchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe---
Confidence 9999 6777777666666554321 11 578999999943 4444 4554332
Q ss_pred CCcccccCCCCCCcEEEe--ccceee-eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 005436 223 GLEGVELVPRLEPAILSV--EGRGFN-VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (697)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~ 299 (697)
++.+ .|+..+ ++.......... ....+..+..+....+++||+|+++.++.+++.|.+.
T Consensus 479 --------------~vtig~~gk~~~rveQ~v~m~~ed~----k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 479 --------------VVTIGSAGKPTPRVEQKVEMVSEDE----KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred --------------EEEeccCCCCccchheEEEEecchH----HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc
Confidence 2222 333332 333332222222 2444555555556778999999999999999999876
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccc
Q 005436 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (697)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~ 379 (697)
++.+..|||+-++++|+.+++.|++|...|+|||+++++|||||+|.+||++++
T Consensus 541 ---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm----------------- 594 (673)
T KOG0333|consen 541 ---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM----------------- 594 (673)
T ss_pred ---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch-----------------
Confidence 899999999999999999999999999999999999999999999999999777
Q ss_pred cccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 380 APISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 380 ~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
.-|...|.||+||+||+ +.|.++.|+++++
T Consensus 595 -aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 -AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 66788899999999999 8899999999876
No 38
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-36 Score=282.44 Aligned_cols=338 Identities=16% Similarity=0.207 Sum_probs=254.3
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH-hccc-cCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-EAGW-ADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~-~~~~-~~~~~~Ivv~p~r~ 105 (697)
+|.+--++....+.+..+.-.-|-.-+|.+ +..+.+++++|.+|..|+|||..+..-++ .... .+..++++++|+|+
T Consensus 28 ~F~~Mgl~edlLrgiY~yGfekPS~IQqrA-i~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRE 106 (400)
T KOG0328|consen 28 TFDDMGLKEDLLRGIYAYGFEKPSAIQQRA-IPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRE 106 (400)
T ss_pred chhhcCchHHHHHHHHHhccCCchHHHhhh-hhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHH
Confidence 455555556666667777777776655554 55566888899999999999922211111 1111 13357899999999
Q ss_pred HHHH--HHHHHHHHHhCCcceeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChh
Q 005436 106 LAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (697)
Q Consensus 106 l~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d 181 (697)
|+.| ++...++..+++.+-.+.|...-.++.. ..-..+++.+|||.++..+....+ -+.+.++|+||++|. ++-.
T Consensus 107 La~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem-L~kg 185 (400)
T KOG0328|consen 107 LAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM-LNKG 185 (400)
T ss_pred HHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH-HHhh
Confidence 9988 5566677788888777777544333322 223689999999999999987766 788999999999963 4446
Q ss_pred HHHHHHHHHHHhCCCceEEEecccccHHHH--HHHhhcCcCCCCCcccccCCCCCCcEEEeccc--e-eeeEEEecCCCc
Q 005436 182 ILLGLLKKIQRCRSDLRLIISSATIEAKSM--SAFFHARKGRRGLEGVELVPRLEPAILSVEGR--G-FNVQIHYVEEPV 256 (697)
Q Consensus 182 ~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~ 256 (697)
+-..+........++.|++++|||++.+.+ .+.|...+++ +.+... + ..++.+|.....
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvr----------------ilvkrdeltlEgIKqf~v~ve~ 249 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVR----------------ILVKRDELTLEGIKQFFVAVEK 249 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCcee----------------EEEecCCCchhhhhhheeeech
Confidence 666666767778889999999999966544 4566655532 222211 1 124566665554
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (697)
+++ ..+.+..+.....-.+.+|||+|+..+..+.+.+.+. .+.|..+||+|+++||.+++..|+.|+-
T Consensus 250 Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~S 317 (400)
T KOG0328|consen 250 EEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKS 317 (400)
T ss_pred hhh---hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCc
Confidence 443 4455555555555667999999999999999999876 7889999999999999999999999999
Q ss_pred EEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 337 kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
+||++|++.++|+|+|.|++|||+++ |.....|+||+||.||. +.|.++.++..++...
T Consensus 318 rvLitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 318 RVLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred eEEEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 99999999999999999999999877 77789999999999999 8999999999887655
No 39
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=306.59 Aligned_cols=337 Identities=20% Similarity=0.267 Sum_probs=245.4
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHh---ccccCCCeEEEEEC
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE---AGWADGGRVIACTQ 102 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~---~~~~~~~~~Ivv~p 102 (697)
+|.+..+|.+..+++......-|.- .|...+....-+++++-+|.|||||| |.+|.+-.. -......+++|++|
T Consensus 182 sF~~mNLSRPlLka~~~lGy~~PTp-IQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 182 SFQSMNLSRPLLKACSTLGYKKPTP-IQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hHHhcccchHHHHHHHhcCCCCCCc-hhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 6777777777766666555555543 34555555567778999999999999 677754221 11112357899999
Q ss_pred ccHHHHH--HHHHHHHHHhCCcceeEEee-EeecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCC
Q 005436 103 PRRLAVQ--AVASRVAEEMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERS 177 (697)
Q Consensus 103 ~r~l~~~--~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~ 177 (697)
||+|+.| ++.+.++....+.+|..+|. .++.+...-...++|+|+|||.|.+++.+.+. ++++.++|+|||+ |.
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RM 339 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RM 339 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HH
Confidence 9999999 88899999999999999983 33332222223799999999999999998875 8999999999999 88
Q ss_pred cChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee--eeEEEecC
Q 005436 178 ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--NVQIHYVE 253 (697)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~ 253 (697)
++..|...+-..+.....+.|.+++|||| ..+.+...--+.|++ ++.-+.... .+...|..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvr---------------ifvd~~~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVR---------------IFVDPNKDTAPKLTQEFIR 404 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeE---------------EEeCCccccchhhhHHHhe
Confidence 87777666555555566788999999999 445555554444321 222222111 11222221
Q ss_pred CC-cchHH-HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 254 EP-VSDYV-QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 254 ~~-~~~~~-~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
.. ..+.. +..+. .+....-...++||+.+++.++++.-.|--. ++.+.-+||+|++++|.+.++.|
T Consensus 405 IR~~re~dRea~l~---~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 405 IRPKREGDREAMLA---SLITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred eccccccccHHHHH---HHHHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHH
Confidence 11 11111 11111 1111122456999999999999987666433 89999999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
+++++.|||||+++++|+||++|..|||+.+ |.+...|+||+||+.|+ +.|..+.|+.+.+
T Consensus 473 k~~eidvLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 473 KKEEIDVLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred HhccCCEEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 9999999999999999999999999999776 88999999999999999 8899999999774
Q ss_pred h
Q 005436 411 F 411 (697)
Q Consensus 411 ~ 411 (697)
-
T Consensus 535 R 535 (691)
T KOG0338|consen 535 R 535 (691)
T ss_pred H
Confidence 3
No 40
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=298.71 Aligned_cols=335 Identities=19% Similarity=0.242 Sum_probs=247.0
Q ss_pred cCCCCCCccchhhHHHHhcCCC-cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHH--Hhcccc--CCCeEEEEE
Q 005436 29 LSSASSIGYGYASIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAGWA--DGGRVIACT 101 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lP-i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l--~~~~~~--~~~~~Ivv~ 101 (697)
+...++|.....++.+ ..++ ....|+..+.-+..++++++.|-|||||| +++|.+- ...... .+..+|+|+
T Consensus 84 f~~~~LS~~t~kAi~~--~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 84 FEEGSLSPLTLKAIKE--MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred hhccccCHHHHHHHHh--cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 4445677776666554 3333 67788888888999999999999999999 8888653 333222 234579999
Q ss_pred CccHHHHHHH--HHHHHHHh-CCcceeEEeeEeec-C-CcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCC
Q 005436 102 QPRRLAVQAV--ASRVAEEM-GVKVGEEVGYTIRF-E-DFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (697)
Q Consensus 102 p~r~l~~~~~--~~~~~~~~-~~~~~~~~g~~~~~-~-~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~H 174 (697)
|||+|+.|.. ++.+-+.. +..++..+|...+. + +.... ..+|+|+|||.|+.++.+.+. ..+..++|+|||+
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 9999999944 44455555 67777777754432 1 12223 799999999999999988654 7778999999999
Q ss_pred cCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee-----eeEE
Q 005436 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF-----NVQI 249 (697)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~ 249 (697)
|.++..|-..+.+.+.....+.|.+++|||.+.+ +.+........ .+..+.+..... .++.
T Consensus 241 -rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~k-V~~l~~~~L~~------------d~~~v~~~d~~~~~The~l~Q 306 (543)
T KOG0342|consen 241 -RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSK-VKDLARGALKR------------DPVFVNVDDGGERETHERLEQ 306 (543)
T ss_pred -hhhhcccHHHHHHHHHhccccceeeEeeCCCcHH-HHHHHHHhhcC------------CceEeecCCCCCcchhhcccc
Confidence 8888888888888877777889999999998543 33332222111 011222222111 2333
Q ss_pred EecCCCcchHHHHHHHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhcc
Q 005436 250 HYVEEPVSDYVQAAVSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (697)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (697)
-|.-.+....+ ..+....+ +..+.+++|||+|...+.-+++.|+.. ++.|..+||++++..|..++
T Consensus 307 gyvv~~~~~~f----~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~ 373 (543)
T KOG0342|consen 307 GYVVAPSDSRF----SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTF 373 (543)
T ss_pred eEEeccccchH----HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHH
Confidence 33333333322 22222222 223378999999999999999999754 88999999999999999999
Q ss_pred CCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 329 ~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
..|++.+.-||||||++++|+|+|+|+.||++|. |-...+|+||+||+||. +.|..+.+..
T Consensus 374 ~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~ 435 (543)
T KOG0342|consen 374 FEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLA 435 (543)
T ss_pred HHHhhcccceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeC
Confidence 9999999999999999999999999999999777 78889999999999999 8899999988
Q ss_pred hhHh
Q 005436 408 EEYF 411 (697)
Q Consensus 408 ~~~~ 411 (697)
+.+.
T Consensus 436 p~El 439 (543)
T KOG0342|consen 436 PWEL 439 (543)
T ss_pred hhHH
Confidence 7654
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.5e-35 Score=328.28 Aligned_cols=319 Identities=16% Similarity=0.179 Sum_probs=222.0
Q ss_pred hHHHHhcCCC-cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 41 SIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 41 ~~~~~r~~lP-i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
++.+...... .++.|.++++++.+++++++++|||+||| +++|.++. .+.+|+++|+++|+.+++... .
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l--~ 86 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQL--L 86 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHH--H
Confidence 3444444443 66899999999999999999999999999 57776543 346899999999998876552 3
Q ss_pred HhCCcceeEEeeEeec------CCcCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcCh-hHH--HHHH
Q 005436 118 EMGVKVGEEVGYTIRF------EDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSIST-DIL--LGLL 187 (697)
Q Consensus 118 ~~~~~~~~~~g~~~~~------~~~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDE~Her~~~~-d~l--~~~l 187 (697)
..|.......+..... ...... ..+++|+||+.+.... .......++++|||||||+.+.+. ++. ...+
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g-~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTG-QIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHH
Confidence 4565544333321111 111122 5789999999987432 222224578999999999654322 222 2234
Q ss_pred HHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHH
Q 005436 188 KKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (697)
Q Consensus 188 ~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (697)
..+....++.+++++|||++.....++....... .+.+.......+ .+.|......... ..+
T Consensus 166 ~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~-------------~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l 227 (607)
T PRK11057 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN-------------DPLIQISSFDRP-NIRYTLVEKFKPL----DQL 227 (607)
T ss_pred HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCC-------------CeEEEECCCCCC-cceeeeeeccchH----HHH
Confidence 4455566889999999999665433333211100 002222111111 1111111111111 222
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcccc
Q 005436 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (697)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~ 347 (697)
........++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|.+|+.+|||||+++++
T Consensus 228 ~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~ 298 (607)
T PRK11057 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGM 298 (607)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhc
Confidence 33333446678999999999999999999765 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 348 Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..+...
T Consensus 299 GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 299 GINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred cCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 999999999999777 78899999999999999 7899999999887544
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.9e-34 Score=329.51 Aligned_cols=326 Identities=21% Similarity=0.187 Sum_probs=216.0
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHH--Hhcc----ccCCCeEEEEECccHHHHHHHHHH--------
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYL--KEAG----WADGGRVIACTQPRRLAVQAVASR-------- 114 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l--~~~~----~~~~~~~Ivv~p~r~l~~~~~~~~-------- 114 (697)
.++.|.++++.+.++++++++||||||||. .+|.+- .... ...+.++||++|+|+|+.|...+.
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999994 444331 1111 112346899999999998854321
Q ss_pred -HHHHhCC-----cceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCc--ChhH
Q 005436 115 -VAEEMGV-----KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSI--STDI 182 (697)
Q Consensus 115 -~~~~~~~-----~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~--~~d~ 182 (697)
++...|. .++..+|.....+.. .....++|+|+||+.|...+.... .+.++++|||||+|+..- ....
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 1222233 333344422211111 111257999999999976664432 378999999999995331 1233
Q ss_pred HHHHHHHHHHhC-CCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec-cceeeeEEEec-----CC
Q 005436 183 LLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYV-----EE 254 (697)
Q Consensus 183 l~~~l~~~~~~~-~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~-----~~ 254 (697)
+...+.++.... ++.++|++|||+ +.+.+++|+.........+.. .++... .+.+.+.+... ..
T Consensus 193 l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~--------~iv~~~~~k~~~i~v~~p~~~l~~~ 264 (876)
T PRK13767 193 LSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDC--------EIVDARFVKPFDIKVISPVDDLIHT 264 (876)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCce--------EEEccCCCccceEEEeccCcccccc
Confidence 444555555543 678999999999 778888988654211000000 011100 01111111110 01
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
............+..... ..+++||||+|++.++.++..|.+..... ..+..+..|||+|++++|..+++.|++|
T Consensus 265 ~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G 339 (876)
T PRK13767 265 PAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRG 339 (876)
T ss_pred ccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcC
Confidence 111112222333333332 35689999999999999999998754211 1246799999999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC----CCcEEEEccC
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV----RPGKCYRLYT 407 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~----~~G~~~~l~~ 407 (697)
+++|||||+++++|||+|++++||++|. |.|.++|+||+|||||. ..|.++..-.
T Consensus 340 ~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 340 ELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999776 78899999999999987 3477776543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.4e-34 Score=323.72 Aligned_cols=307 Identities=18% Similarity=0.175 Sum_probs=214.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
..+.|.++++++.+++++++++|||+||| +++|.++ .++.++|++|+++|+.+++... ...|+.+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~~g~~lVisPl~sL~~dq~~~l--~~~gi~~~~~~s 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------LKGLTVVISPLISLMKDQVDQL--RAAGVAAAYLNS 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHH--HHcCCcEEEEeC
Confidence 56789999999999999999999999999 5666553 2356799999999998877652 335665544333
Q ss_pred eEeecC-----CcCCCCCceEEEechHHHHHHHh-cCCCCCCCcEEEEeCCCcCCcC-hhHHH--HHHHHHHHhCCCceE
Q 005436 129 YTIRFE-----DFTNKDLTAIKFLTDGVLLREMM-DDPLLTKYSVIMVDEAHERSIS-TDILL--GLLKKIQRCRSDLRL 199 (697)
Q Consensus 129 ~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~-~~~~l~~~~~iIiDE~Her~~~-~d~l~--~~l~~~~~~~~~~~i 199 (697)
.....+ .....+..+|+|+||+.+..... ......++++|||||||..+.+ .++.. ..+..+....++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCE
Confidence 211110 00112267899999999864322 2222568999999999965532 23322 223334445567779
Q ss_pred EEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 005436 200 IISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (697)
Q Consensus 200 i~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (697)
+++|||++..... .+++.... ..+ ..+.. ...+.|......+.. ..+........+
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~---------------~~~-~~~~~-r~nl~~~v~~~~~~~----~~l~~~l~~~~~ 224 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADA---------------NEF-ITSFD-RPNLRFSVVKKNNKQ----KFLLDYLKKHRG 224 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCC---------------CeE-ecCCC-CCCcEEEEEeCCCHH----HHHHHHHHhcCC
Confidence 9999999665443 33332110 011 11110 111122111111111 122222233346
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEE
Q 005436 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (697)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~ 356 (697)
+++||||+++++++.+++.|... ++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+|++
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 78999999999999999999764 788999999999999999999999999999999999999999999999
Q ss_pred EEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 357 VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
||++++ |.|..+|.||+|||||. .+|.|+.+|+..+...
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 999777 77889999999999999 6899999999877543
No 44
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=277.18 Aligned_cols=311 Identities=19% Similarity=0.220 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcceeEEe
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~~~g 128 (697)
+.|++.+.....+++++.-|..|+||| +.+|.+-........-+.++++|+|+||-| ++...+++.+++.+...+|
T Consensus 110 PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttG 189 (459)
T KOG0326|consen 110 PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTG 189 (459)
T ss_pred CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecC
Confidence 346677777789999999999999999 788866443332233457999999999988 7888899999999888888
Q ss_pred eEeecCCc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 129 YTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 129 ~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
.+.-.++. .-.+..+++|+|||++++....+.. +++...+|+|||+ ..++.+|...+-+.+....++.++++.|||.
T Consensus 190 GT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 190 GTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred CcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEeccc
Confidence 65444443 2233789999999999998877654 9999999999999 5677788777777777788889999999998
Q ss_pred cH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc--eeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEE
Q 005436 207 EA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVF 282 (697)
Q Consensus 207 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF 282 (697)
+. ..|.+-.-..|. .+..-.. ...+..+|.-..... .+..+..+...-.-.+.+||
T Consensus 269 P~tVk~Fm~~~l~kPy----------------~INLM~eLtl~GvtQyYafV~e~q----KvhCLntLfskLqINQsIIF 328 (459)
T KOG0326|consen 269 PLTVKGFMDRHLKKPY----------------EINLMEELTLKGVTQYYAFVEERQ----KVHCLNTLFSKLQINQSIIF 328 (459)
T ss_pred chhHHHHHHHhccCcc----------------eeehhhhhhhcchhhheeeechhh----hhhhHHHHHHHhcccceEEE
Confidence 44 333322222221 2322221 123444554333222 22333333333345678999
Q ss_pred cCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCc
Q 005436 283 LTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGF 362 (697)
Q Consensus 283 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~ 362 (697)
|++...+|-+|+.+.+. ++...++|+.|.++.|+++|..|++|.++.+|||+.+.+|||+++|++||++++
T Consensus 329 CNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf 399 (459)
T KOG0326|consen 329 CNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF 399 (459)
T ss_pred eccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCC
Confidence 99999999999999876 899999999999999999999999999999999999999999999999999888
Q ss_pred ccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 363 SKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 363 ~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
|-+..+|.||+||+||. ..|.++.|++-++-
T Consensus 400 ------------------pk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 400 ------------------PKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred ------------------CCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 77889999999999999 88999999985543
No 45
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.7e-33 Score=301.79 Aligned_cols=476 Identities=18% Similarity=0.194 Sum_probs=306.2
Q ss_pred HHHHHHHHH-HHhcCCEEEEEcCCCChHHHHHHHHHHhccc---------cCCCeEEEEECccHHHHHHHHHHHHHH--h
Q 005436 52 YKYRTAILY-LVETHATTIIVGETGSGKTTQIPQYLKEAGW---------ADGGRVIACTQPRRLAVQAVASRVAEE--M 119 (697)
Q Consensus 52 ~~~q~~i~~-~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~---------~~~~~~Ivv~p~r~l~~~~~~~~~~~~--~ 119 (697)
...|.++.+ +..++.|.+||||||||||-++..-++.... .+.-++|||+|.++|+++.+.++-.+. +
T Consensus 112 N~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 112 NRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 344555444 3467899999999999999444433332211 134579999999999998666554443 3
Q ss_pred CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHH---hcC-CCCCCCcEEEEeCCC----cCCcChhHHHHHHHHHH
Q 005436 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM---MDD-PLLTKYSVIMVDEAH----ERSISTDILLGLLKKIQ 191 (697)
Q Consensus 120 ~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l---~~~-~~l~~~~~iIiDE~H----er~~~~d~l~~~l~~~~ 191 (697)
|+.+...+|...-.... .. .++|+|+||+.+.-.- ..+ .+++.+.+|||||+| +|+...+.+.+...+..
T Consensus 192 gi~v~ELTGD~ql~~te-i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTE-IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred cceEEEecCcchhhHHH-HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 78888888843322222 33 6999999999875322 222 247889999999999 56664444444443333
Q ss_pred H-hCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee--eeEEEecCCCcc-------hHH
Q 005436 192 R-CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--NVQIHYVEEPVS-------DYV 260 (697)
Q Consensus 192 ~-~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~-------~~~ 260 (697)
. ....+|+|++|||+ |.++++.|+...+... ++...++.. |.+..+...... ..-
T Consensus 270 essqs~IRivgLSATlPN~eDvA~fL~vn~~~g--------------lfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPNYEDVARFLRVNPYAG--------------LFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HhhhhheEEEEeeccCCCHHHHHHHhcCCCccc--------------eeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 3 56789999999999 9999999998754221 444444443 334433332221 111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC-----CCC--C-------eEEEEecCCCCHHHHhh
Q 005436 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK-----NSS--G-------LIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~-----~~~--~-------~~v~~lh~~l~~~~r~~ 326 (697)
+.....+.+.+ ..+.+++|||.++++..+.|+.|.+.....+. ..+ + ..+..+|+||..++|..
T Consensus 336 ~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 336 EVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHH
Confidence 12223333333 35788999999999999999999887544221 111 1 45889999999999999
Q ss_pred ccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEE
Q 005436 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCY 403 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~ 403 (697)
+...|..|.++|++||.++++|+|+|+--++| ..++.||+..|... -.+.....|..|||||. ..|..+
T Consensus 414 ~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~gi 485 (1230)
T KOG0952|consen 414 VEKEFKEGHIKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGI 485 (1230)
T ss_pred HHHHHhcCCceEEEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEE
Confidence 99999999999999999999999999877777 34677998876432 44667788999999999 668877
Q ss_pred EccChh---HhhhhCCCCC--------------CCcccc---cchhHHHHHHHH------cCCCCccCC----CCC-CCC
Q 005436 404 RLYTEE---YFVKEIPAEG--------------IPEMQR---SNLVSCVIQLKA------LGIDNILGF----DWP-ASP 452 (697)
Q Consensus 404 ~l~~~~---~~~~~~~~~~--------------~pei~~---~~l~~~~L~l~~------~~~~~~~~~----~~~-~~p 452 (697)
.+-+.+ .|.+.+.... ..||.. .++++.+-+++. ++ +|+... ..+ ..|
T Consensus 486 IiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~-KNP~~Ygi~~~~l~~dp 564 (1230)
T KOG0952|consen 486 IITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR-KNPMAYGISYEELEPDP 564 (1230)
T ss_pred EEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec-cChHHhhhhhhcccCCc
Confidence 777654 3333222221 223322 134444444442 11 122111 111 122
Q ss_pred CH-----HHHHHHHHHHHHcCCc--cCCC---CCChHhhcccccCCCChhhHHHHHhhcc-cCChHHHHHHHHHhccccc
Q 005436 453 PP-----EAMIRALEVLYSLGVL--DDDA---KLTSPTGFQVAEIPLEPMISKMILSSNE-LGCSEEIITISAVLSIQSI 521 (697)
Q Consensus 453 ~~-----~~~~~a~~~L~~lgal--d~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~-~~c~~~~~~i~a~ls~~~~ 521 (697)
.. +.+..++..|-....| |.++ ..| .+||.|+.+++..+..+.++.... +--.++++.++++-+.-+-
T Consensus 565 ~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~st-dlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ 643 (1230)
T KOG0952|consen 565 RLESHRRELCLVAAMELDKVQMIRFDERTGYLKST-DLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQ 643 (1230)
T ss_pred hHHHHHHHHHHHHHHHhhhhheEEEecccceEccc-chhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhh
Confidence 22 2344566666555444 4332 578 599999999999999999999988 7778888888887665432
Q ss_pred cccCcchhHHHHHHH------HhhccCCCcHHHHHHHHHh
Q 005436 522 WVSGRGAQKELDEAK------LRFAAAEGDHVTFLNIYKG 555 (697)
Q Consensus 522 f~~~~~~~~~~~~~~------~~~~~~~~D~~~~l~~~~~ 555 (697)
.-.-.++.+.+++.. ..|....|+.-.++.+|..
T Consensus 644 ik~R~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 644 IKVREEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred hhhhhhhHHHHHHHHhcccccccccccchhHHHHHHhhhh
Confidence 211122333343332 2233334677777777653
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-32 Score=306.13 Aligned_cols=385 Identities=19% Similarity=0.178 Sum_probs=267.8
Q ss_pred hhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHH--Hhcc---ccCCCeEEEEECccHHHHHHH
Q 005436 39 YASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAG---WADGGRVIACTQPRRLAVQAV 111 (697)
Q Consensus 39 ~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l--~~~~---~~~~~~~Ivv~p~r~l~~~~~ 111 (697)
.+++.+.+ ---..+.|..++..+.+|++++|.|||||||| ..+|.+- .+.. ...+-.++||+|.|+|..+..
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 34555555 33456778889999999999999999999999 3445432 2221 112346799999999998743
Q ss_pred --HHHHHHHhCCcceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCc--ChhHH
Q 005436 112 --ASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSI--STDIL 183 (697)
Q Consensus 112 --~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~--~~d~l 183 (697)
.+...+++|.++...+|.+.+.+.. ...+.++|+++||+.|.-.+.... .+.++.+|||||+|+... ....+
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhh
Confidence 3346678899998888866554443 223368999999999987765543 389999999999994321 11233
Q ss_pred HHHHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc-ceeeeEEEecCCCc---ch
Q 005436 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPV---SD 258 (697)
Q Consensus 184 ~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---~~ 258 (697)
...+.++....++++.|++|||+ +.+.+++|+...... ..++.+.+ +...+++....... ..
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~-------------~~Iv~~~~~k~~~i~v~~p~~~~~~~~~ 237 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDP-------------CEIVDVSAAKKLEIKVISPVEDLIYDEE 237 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCc-------------eEEEEcccCCcceEEEEecCCccccccc
Confidence 34455555555589999999999 999999999765311 11333333 23334443333221 11
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEE
Q 005436 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (697)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ki 338 (697)
........+..+.+. ...+|||+||+..+|.++..|.+.. ...+..|||+++.++|..+++.|++|+.++
T Consensus 238 ~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lra 307 (814)
T COG1201 238 LWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKA 307 (814)
T ss_pred hhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceE
Confidence 223344555555544 3379999999999999999998873 478999999999999999999999999999
Q ss_pred EEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC----CCcEEEEccChhHhhhh
Q 005436 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV----RPGKCYRLYTEEYFVKE 414 (697)
Q Consensus 339 lvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~----~~G~~~~l~~~~~~~~~ 414 (697)
+|||+.+|-|||+.+|+.||+.+- |.|.+.+.||+||+|+. ..|..|..-..+..+..
T Consensus 308 vV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~ 369 (814)
T COG1201 308 VVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECL 369 (814)
T ss_pred EEEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHH
Confidence 999999999999999999999665 77888888999999987 44665555532222210
Q ss_pred -------CCCCCCCcccccchhHHHHHHHHcCCCCccC-----------CCCCCCCCHHHHHHHHHHHHH
Q 005436 415 -------IPAEGIPEMQRSNLVSCVIQLKALGIDNILG-----------FDWPASPPPEAMIRALEVLYS 466 (697)
Q Consensus 415 -------~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~-----------~~~~~~p~~~~~~~a~~~L~~ 466 (697)
-.....+++...+|+-++-++.++-+..... ++| ..-+.+.....++.|..
T Consensus 370 vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy-~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 370 VLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPY-ADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccc-ccCCHHHHHHHHHHHhh
Confidence 1223457777777777777766554332111 122 22356778888888887
No 47
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=272.38 Aligned_cols=320 Identities=19% Similarity=0.222 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhccccCCCeEEEEECccHHHHHHHHHH--HHHHhCCcceeEE
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMGVKVGEEV 127 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~--~~~~~~~~~~~~~ 127 (697)
.+.|...+..|..|+++|-+|.||||||+ .+|.+-....-..+.-.++++|||+++.|...++ +.+.++.++...+
T Consensus 31 TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~viv 110 (442)
T KOG0340|consen 31 TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIV 110 (442)
T ss_pred CchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEE
Confidence 35688899999999999999999999994 4554433222223345699999999999855554 3355677777777
Q ss_pred eeEeec-CCcCCCCCceEEEechHHHHHHHhcCC----C-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 128 GYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDP----L-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 128 g~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~----~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
|+.... +...-.+.++++++|||.+...+.+++ + +.++.++|+|||+ |....+|-..+--.........+.++
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQTLL 189 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccceEE
Confidence 754322 222223489999999999999887762 2 8999999999999 77766554443333333445568999
Q ss_pred ecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEe-cccee--eeEEEecCCCcchHHHHHHHHHHHHHhcCCCCc
Q 005436 202 SSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGF--NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (697)
Q Consensus 202 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (697)
+|||++.. +...++... ...+ ....+. ++... .....|...+... .+...-.++...++++++.
T Consensus 190 fSATitd~-i~ql~~~~i-~k~~----------a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv~~Lr~~~~~~~~s 256 (442)
T KOG0340|consen 190 FSATITDT-IKQLFGCPI-TKSI----------AFELEVIDGVSTVETLYQGYILVSIDV-KDAYLVHLLRDFENKENGS 256 (442)
T ss_pred EEeehhhH-HHHhhcCCc-cccc----------ceEEeccCCCCchhhhhhheeecchhh-hHHHHHHHHhhhhhccCce
Confidence 99999432 444443221 1100 001111 12111 1122232222111 1112222233334447889
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEE
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VI 358 (697)
++||+++..+++.++..|... ++.+..+||.|++.+|...+..|+.+..+||+||+++++|+|||.|..||
T Consensus 257 imIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv 327 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV 327 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE
Confidence 999999999999999999776 89999999999999999999999999999999999999999999999999
Q ss_pred ecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 359 d~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+++ |-+...|+||.||+.|+ +.|.++.++++.+.+
T Consensus 328 N~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 328 NHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred ecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 9777 77888999999999999 789999999976543
No 48
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.7e-33 Score=284.44 Aligned_cols=326 Identities=20% Similarity=0.236 Sum_probs=225.0
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce---e
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG---E 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~---~ 125 (697)
+-...||..+......+ +++|+.|||-|||+++...+.......++++|+++||+-|+.|. +..+.+.+|.+.. .
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh-~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQH-AEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHH-HHHHHHHhCCChhheee
Confidence 44567888877776665 69999999999998777666644333345899999999999875 4456677776544 3
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
.+|-....+....-...+|+|+||+++.+-+..+.. +.+++++|+|||| |.........+.+...+...+..+++|||
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTA 170 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTA 170 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEec
Confidence 444211111111122678999999999998887766 9999999999999 77666666667777777788889999999
Q ss_pred cc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC---------------------------
Q 005436 205 TI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------------------------- 255 (697)
Q Consensus 205 T~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------- 255 (697)
|+ +.+.+.+...+..........+..+...+.+ ..+++.+....
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv-------~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYV-------KKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhh-------ccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99 7788888877654322111111111100000 01111111100
Q ss_pred ---------cch-------------------------------------------------HHH----------------
Q 005436 256 ---------VSD-------------------------------------------------YVQ---------------- 261 (697)
Q Consensus 256 ---------~~~-------------------------------------------------~~~---------------- 261 (697)
..+ |+.
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 000 000
Q ss_pred ----------------------------HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 005436 262 ----------------------------AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (697)
Q Consensus 262 ----------------------------~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (697)
.....+.......++.+++||+.-++.++.+.+.|.+... ...+.
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~~r 396 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KARVR 396 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-------cceeE
Confidence 0000111111234557899999999999999999987632 22212
Q ss_pred E-------ecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHh
Q 005436 314 P-------LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (697)
Q Consensus 314 ~-------lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~ 386 (697)
+ ...||++.+|.++++.|++|+.+|||||+++|+|+|||++++||. |+| -.|..-
T Consensus 397 FiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEp----------vpSeIR 458 (542)
T COG1111 397 FIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEP----------VPSEIR 458 (542)
T ss_pred EeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecC----------CcHHHH
Confidence 2 235899999999999999999999999999999999999999997 554 456778
Q ss_pred HHHhhcccCCCCCcEEEEccChh
Q 005436 387 ARQRAGRAGRVRPGKCYRLYTEE 409 (697)
Q Consensus 387 ~~Qr~GRaGR~~~G~~~~l~~~~ 409 (697)
++||.||+||.++|.+|.|+++.
T Consensus 459 ~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 459 SIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred HHHhhCccccCCCCeEEEEEecC
Confidence 88999999999999999999876
No 49
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=291.24 Aligned_cols=316 Identities=20% Similarity=0.200 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHh--ccc------cC--CCeEEEEECccHHHHHHH--HHHHHH
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE--AGW------AD--GGRVIACTQPRRLAVQAV--ASRVAE 117 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~--~~~------~~--~~~~Ivv~p~r~l~~~~~--~~~~~~ 117 (697)
..+|+..+..+..++.++++|+|||||| +++|.+-.. ... .. ....++++|||+|+.|-+ ++++..
T Consensus 98 tpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~ 177 (482)
T KOG0335|consen 98 TPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSY 177 (482)
T ss_pred CcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcc
Confidence 3557777888999999999999999999 888876442 211 01 246799999999999844 333444
Q ss_pred HhCCcceeEEee-EeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC-hhHHHHHHHHHHHhC
Q 005436 118 EMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCR 194 (697)
Q Consensus 118 ~~~~~~~~~~g~-~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~-~d~l~~~l~~~~~~~ 194 (697)
..+.+.....|. ..+.+.......++|+|+|||.|...+..... ++++.++|+|||+ |.++ ..|...+-+.+....
T Consensus 178 ~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~ 256 (482)
T KOG0335|consen 178 LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLG 256 (482)
T ss_pred cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccC
Confidence 444444333332 11222233344799999999999999877766 9999999999999 6766 666655555544422
Q ss_pred ----CCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHH
Q 005436 195 ----SDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (697)
Q Consensus 195 ----~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (697)
.+.+.+++|||.+. ..+..+|-.... . ...+..+.+....+..........+.....++.+.
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~y--i----------~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~ 324 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNY--I----------FLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLN 324 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccc--e----------EEEEeeeccccccceeEeeeecchhhHHHHHHHhh
Confidence 46889999999943 344444432210 0 00011222222222222222222222222333222
Q ss_pred HHHhcCCCC-----cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC
Q 005436 269 LIHDKEPPG-----DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (697)
Q Consensus 269 ~~~~~~~~~-----~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~ 343 (697)
........+ .++|||.+++.+..++..|... ++....+||..++.+|.+.++.|++|...|+|||+
T Consensus 325 ~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 325 KDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred cccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 222111233 7999999999999999999765 88999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 344 i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
++++|+|||+|++||++++ |.+..+|+||+||+||. ..|.+..|++
T Consensus 396 VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred hhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCCCceeEEEec
Confidence 9999999999999999666 66777888999999999 7899999998
No 50
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=295.71 Aligned_cols=349 Identities=20% Similarity=0.218 Sum_probs=240.2
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH---------hc--cccC
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK---------EA--GWAD 93 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~---------~~--~~~~ 93 (697)
+-|.+++++....+++.....+-|.-.+...+..++....+++-.|.|||||| |-||.+.. +. .-..
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 57889988999988888887777876666667777777789999999999999 77786651 10 0011
Q ss_pred CCe--EEEEECccHHHHH--HHHHHHHHHhCCcceeEEeeE-ee-cCCcCCCCCceEEEechHHHHHHHhcCCC----CC
Q 005436 94 GGR--VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-IR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL----LT 163 (697)
Q Consensus 94 ~~~--~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~~~g~~-~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~----l~ 163 (697)
..+ .+|++|||+|+.| +....++...++++...+|.- +. .+...+. .++|+|+|||+|+..+..+.. +.
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 223 6999999999998 444556778888888888832 22 2223334 799999999999998876643 78
Q ss_pred CCcEEEEeCCCcCCcChhH---HHHHHHHHHH--hCCCceEEEecccccHHHHHHHhhcCcCCCCC----cccccCCCCC
Q 005436 164 KYSVIMVDEAHERSISTDI---LLGLLKKIQR--CRSDLRLIISSATIEAKSMSAFFHARKGRRGL----EGVELVPRLE 234 (697)
Q Consensus 164 ~~~~iIiDE~Her~~~~d~---l~~~l~~~~~--~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 234 (697)
++.++|+||++ |.+.-.. +..+++.+.. .....|.+++|||+.....+..-......... ......
T Consensus 340 ~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L---- 414 (731)
T KOG0347|consen 340 KVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL---- 414 (731)
T ss_pred hceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH----
Confidence 89999999999 6655433 3444555442 34567899999998554332221111000000 000000
Q ss_pred CcEEEeccceeeeEEEecCCCc-chHHHHHHHHHHHH-----------HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 005436 235 PAILSVEGRGFNVQIHYVEEPV-SDYVQAAVSTVLLI-----------HDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (697)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~ 302 (697)
...+...+. | . +.+... ..-.....+..+.+ ....-+|.+|||||+.+.+.+++-.|+..
T Consensus 415 mk~ig~~~k--p-k--iiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--- 486 (731)
T KOG0347|consen 415 MKKIGFRGK--P-K--IIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--- 486 (731)
T ss_pred HHHhCccCC--C-e--eEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---
Confidence 000011111 1 0 111111 11111111111111 11224689999999999999999999765
Q ss_pred ccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccccccccc
Q 005436 303 SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (697)
Q Consensus 303 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~ 382 (697)
++...++|+.|.+.+|.+-++.|++..--||+||++|++|+|||+|.+||+|.. |-
T Consensus 487 ------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------Pr 542 (731)
T KOG0347|consen 487 ------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PR 542 (731)
T ss_pred ------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec------------------CC
Confidence 788899999999999999999999999999999999999999999999999655 55
Q ss_pred CHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 383 SKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 383 S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
+..-|+||.||+.|+ ..|..+.|+.+.+...
T Consensus 543 tseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred ccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 666677999999999 8899999999876433
No 51
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-33 Score=272.65 Aligned_cols=310 Identities=20% Similarity=0.280 Sum_probs=232.7
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccc------cCCCeEEEEECccHHHHHHHHH-HHHHHhCCccee
Q 005436 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGGRVIACTQPRRLAVQAVAS-RVAEEMGVKVGE 125 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~------~~~~~~Ivv~p~r~l~~~~~~~-~~~~~~~~~~~~ 125 (697)
|.++...+.++.+++.+|.||+||| +++|-++..... ..+..+++++|+|+|+.|.-.. ......|.+..+
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 4456666789999999999999999 777766543221 2345689999999999873333 223444666556
Q ss_pred EEeeEeecCCcCC-CCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 126 EVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 126 ~~g~~~~~~~~~~-~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..|...|.+.... .....|+++||+.|......+.. +..+.++|+|||+ |.++..|-..+.+.++..+|+.+.++.|
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeec
Confidence 6665555443321 23689999999999998887766 9999999999999 8999999999999999999999999999
Q ss_pred ccccH--HHHH-HHhhcCcCCCCCcccccCCCCCCcEEEeccce-----eeeEEEecCCCcchHHHHHHHHHHHHHhcCC
Q 005436 204 ATIEA--KSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEP 275 (697)
Q Consensus 204 AT~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (697)
||.+. ..++ .|+.+ + ++.+.|.. ..|+..+.-....+.. ..+..... ....
T Consensus 406 ATWP~~VrrLa~sY~Ke-p-----------------~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~--~ms~ 464 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKE-P-----------------MIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVA--NMSS 464 (629)
T ss_pred ccCchHHHHHHHHhhhC-c-----------------eEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHH--hcCC
Confidence 99944 3444 44443 2 33333432 2344444333333322 22222222 2245
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeE
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~ 355 (697)
..++||||..+..+..+...|.- .++....+||+-.+.+|+..++.|+.|+.+|||||+++.+|+|+|+|+
T Consensus 465 ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 465 NDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred CceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 67899999998877776665543 388899999999999999999999999999999999999999999999
Q ss_pred EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 356 ~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
+|+++++ |....+|.||+||+||+ +.|..+.+++..++..
T Consensus 536 HV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 536 HVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred eeeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 9999777 67778888999999999 8899999999877654
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.6e-32 Score=319.39 Aligned_cols=294 Identities=20% Similarity=0.203 Sum_probs=192.5
Q ss_pred EEcCCCChHH--HHHHHHHHh--cc--------ccCCCeEEEEECccHHHHHHHHHH------HH---H-----HhCCcc
Q 005436 70 IVGETGSGKT--TQIPQYLKE--AG--------WADGGRVIACTQPRRLAVQAVASR------VA---E-----EMGVKV 123 (697)
Q Consensus 70 i~apTGsGKT--~~lp~~l~~--~~--------~~~~~~~Ivv~p~r~l~~~~~~~~------~~---~-----~~~~~~ 123 (697)
|+|||||||| +.+|.+... .. ..++.++|||+|+|+|+.|...+. +. . ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 444433221 11 012467899999999998855432 11 1 124556
Q ss_pred eeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcC--hhHHHHHHHHHHHh-CCCc
Q 005436 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRC-RSDL 197 (697)
Q Consensus 124 ~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~l~~~l~~~~~~-~~~~ 197 (697)
+..+|.....+.. .....++|+|+||+.|...+.++ ..++++++|||||+|+..-. ...+...+.++... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 6666643332221 11226899999999998876543 24899999999999954321 12344445555543 4578
Q ss_pred eEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec-cceeeeEEEecCCC-------------------c
Q 005436 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEP-------------------V 256 (697)
Q Consensus 198 ~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-------------------~ 256 (697)
|+|++|||+ |.+.+++|++...... ++..+ .+..++++...... .
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~--------------Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~ 226 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVT--------------VVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGRE 226 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEE--------------EECCCCCcccceEEEEecCchhhccccccccccccchhhh
Confidence 999999999 8889999997531100 11000 01111111110000 0
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc------------------------CCCCCeEE
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK------------------------KNSSGLII 312 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~------------------------~~~~~~~v 312 (697)
..........+.... ...+++||||||++.++.++..|++...... .......+
T Consensus 227 ~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia 304 (1490)
T PRK09751 227 GSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIA 304 (1490)
T ss_pred hhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceee
Confidence 000001111122222 2357899999999999999999987532100 00012347
Q ss_pred EEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhc
Q 005436 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (697)
Q Consensus 313 ~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~G 392 (697)
..|||+|++++|..+++.|++|++++||||++++.||||++|++||++|. |.|.++|+||+|
T Consensus 305 ~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiG 366 (1490)
T PRK09751 305 RSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIG 366 (1490)
T ss_pred eeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999776 889999999999
Q ss_pred ccCCC
Q 005436 393 RAGRV 397 (697)
Q Consensus 393 RaGR~ 397 (697)
||||.
T Consensus 367 RAGR~ 371 (1490)
T PRK09751 367 RAGHQ 371 (1490)
T ss_pred CCCCC
Confidence 99998
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.6e-32 Score=309.99 Aligned_cols=305 Identities=17% Similarity=0.174 Sum_probs=207.7
Q ss_pred CcHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH--HHHHhCC
Q 005436 50 PVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMGV 121 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~--~~~~~~~ 121 (697)
...+.|.++++.+.++ .+.+++||||||||..+...+... ...+.++++++||+.|+.|.+... ....++.
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i 529 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQHFETFKERFANFPV 529 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCc
Confidence 3578888888888764 679999999999994433333322 224578999999999998855432 2223455
Q ss_pred cceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCC
Q 005436 122 KVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (697)
Q Consensus 122 ~~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~ 196 (697)
+++...|+....+. ....+..+|+|+||..+ ..+..+.++++|||||+|..+. .....+.....+
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv------~~~~~L~~~~~~ 599 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGV------KQKEKLKELRTS 599 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccch------hHHHHHHhcCCC
Confidence 55555553321111 01122589999999533 3344488999999999995332 122333445678
Q ss_pred ceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec-cceeeeEEEecCCCcchHHHHHHHHHHHHHhcCC
Q 005436 197 LRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEP 275 (697)
Q Consensus 197 ~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (697)
.++++||||+.+..+...+.... ...++..+ ....+++.++..... .. ....+.... ..
T Consensus 600 ~~vL~~SATpiprtl~~~l~g~~--------------d~s~I~~~p~~R~~V~t~v~~~~~-~~---i~~~i~~el--~~ 659 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMSMSGIR--------------DLSIIATPPEDRLPVRTFVMEYDP-EL---VREAIRREL--LR 659 (926)
T ss_pred CCEEEEecCCCHHHHHHHHhcCC--------------CcEEEecCCCCccceEEEEEecCH-HH---HHHHHHHHH--Hc
Confidence 89999999997766554332211 01122221 222345544443221 11 111222211 24
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeE
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~ 355 (697)
+++++|||+++++++.+++.|.+.. ++..+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 6889999999999999999998753 467899999999999999999999999999999999999999999999
Q ss_pred EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 356 ~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
+||..+. .. .+.+++.||+||+||. +.|.||.++++.
T Consensus 733 ~VIi~~a--------~~---------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 733 TIIIERA--------DK---------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEEecC--------CC---------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9997332 21 2345678999999999 889999998753
No 54
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=276.61 Aligned_cols=316 Identities=22% Similarity=0.239 Sum_probs=236.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc-----ccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcc
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~-----~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~ 123 (697)
+.|.+++.....+++++-.|-|||||| ++.|.++.-.. ...+.-.+||+|+|+|+.| +.++.+.+..|+++
T Consensus 248 piq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~ 327 (731)
T KOG0339|consen 248 PIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRV 327 (731)
T ss_pred cccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceE
Confidence 345556666678899999999999999 66676654221 1234456999999999998 66778888889988
Q ss_pred eeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 124 GEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 124 ~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
....|....++... ....+.|+|||||+|+.....+.. +.+++++|+||++ |..+..|...+-......+++.|.++
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtll 406 (731)
T KOG0339|consen 328 VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLL 406 (731)
T ss_pred EEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEE
Confidence 88888655544322 123789999999999998866554 9999999999999 88888888888777777899999999
Q ss_pred ecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEE-EecCCCcchHHHHHHHHHHHHHhcCCCCc
Q 005436 202 SSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI-HYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (697)
Q Consensus 202 ~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (697)
+|||+ ..+.+++-+-..+++... ..+......+.. .+.-.... ...-..+.++......|+
T Consensus 407 FsaTf~~kIe~lard~L~dpVrvVq-------------g~vgean~dITQ~V~V~~s~~---~Kl~wl~~~L~~f~S~gk 470 (731)
T KOG0339|consen 407 FSATFKKKIEKLARDILSDPVRVVQ-------------GEVGEANEDITQTVSVCPSEE---KKLNWLLRHLVEFSSEGK 470 (731)
T ss_pred eeccchHHHHHHHHHHhcCCeeEEE-------------eehhccccchhheeeeccCcH---HHHHHHHHHhhhhccCCc
Confidence 99999 445555444444422110 011000111111 11111111 122223344445566789
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEE
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VI 358 (697)
+|+|+....++++++..|.-. ++.+..+||++.+.+|.+++..|+.+...|+++|+++++|+|||++..||
T Consensus 471 vlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv 541 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV 541 (731)
T ss_pred EEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee
Confidence 999999999999999988654 89999999999999999999999999999999999999999999999999
Q ss_pred ecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 359 d~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
++++ .. +...+.||+||+||. ..|.+|.|+++.+-+
T Consensus 542 nyD~--------ar----------dIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 542 NYDF--------AR----------DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccc--------cc----------hhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 9555 33 445556999999999 679999999987654
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-32 Score=292.53 Aligned_cols=309 Identities=18% Similarity=0.184 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeE
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~ 130 (697)
.-|.++++++.+++++++..|||+||| ||+|.++. .|.+|||+|..+|..+++.. ....|+......+..
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~--l~~~Gi~A~~lnS~l 91 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQ--LEAAGIRAAYLNSTL 91 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHH--HHHcCceeehhhccc
Confidence 347899999999999999999999999 99998876 34689999999999998887 444554443332221
Q ss_pred eecCC-----cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh-hHHHHH--HHHHHHhCCCceEEE
Q 005436 131 IRFED-----FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST-DILLGL--LKKIQRCRSDLRLII 201 (697)
Q Consensus 131 ~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~-d~l~~~--l~~~~~~~~~~~ii~ 201 (697)
...+. ....+..+++|.+|+.|...-..+.. -..+++++|||||+.+-+. ||-..+ +..+....++++++.
T Consensus 92 ~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~A 171 (590)
T COG0514 92 SREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLA 171 (590)
T ss_pred CHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEE
Confidence 11111 11122579999999998643221111 4578999999999777443 454333 334555667899999
Q ss_pred ecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEE
Q 005436 202 SSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (697)
Q Consensus 202 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 281 (697)
+|||.+.....+......... +.++. .+. ..-.++|.-....+...... .+.. ......+..||
T Consensus 172 lTATA~~~v~~DI~~~L~l~~------------~~~~~-~sf-dRpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GII 235 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQD------------ANIFR-GSF-DRPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGII 235 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCC------------cceEE-ecC-CCchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEE
Confidence 999997765555543322110 00111 110 11122222211111111111 1111 22445677899
Q ss_pred EcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecC
Q 005436 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (697)
Q Consensus 282 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g 361 (697)
||.|++.++.+++.|... ++.+..+||+|+.++|..+.+.|.+++.+|+|||+.+++|||-|||++||+++
T Consensus 236 Yc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 236 YCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred EEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 999999999999999875 89999999999999999999999999999999999999999999999999988
Q ss_pred cccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 362 ~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
+ |.|..+|.|-+|||||. .|..|+.||++.+..
T Consensus 307 l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 307 L------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred C------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 7 88999999999999999 899999999987754
No 56
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=272.01 Aligned_cols=347 Identities=19% Similarity=0.237 Sum_probs=225.5
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccc------cCCCeEEEEECccHHHHHHH--HHHHHHHhC
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGGRVIACTQPRRLAVQAV--ASRVAEEMG 120 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~------~~~~~~Ivv~p~r~l~~~~~--~~~~~~~~~ 120 (697)
....|+..+..+.++++++|.++|||||| |++|..-..... ..|..++|++|||+|+.|.+ .+.+.+.+.
T Consensus 160 pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 55677777888888999999999999999 888865432221 13456799999999998743 222222222
Q ss_pred -CcceeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHH---HHHHHH--
Q 005436 121 -VKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLG---LLKKIQ-- 191 (697)
Q Consensus 121 -~~~~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~---~l~~~~-- 191 (697)
+..|...|...+...+. -..+.+|+|+|||+|++++.+... +.++.+||+||++ |.++..|-.. +++.+.
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~~ 318 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHSI 318 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhhc
Confidence 22233444332222111 123789999999999999987654 8889999999999 5444433222 222221
Q ss_pred --HhC------CCceEEEecccc--cHHHHHHHhhcCcCCCCCcc--cccCCCCCCcE----------EEeccceeeeEE
Q 005436 192 --RCR------SDLRLIISSATI--EAKSMSAFFHARKGRRGLEG--VELVPRLEPAI----------LSVEGRGFNVQI 249 (697)
Q Consensus 192 --~~~------~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~v~~ 249 (697)
..+ +..+-+++|||+ .+..+++.--..+.-..... ....+...... +..-.-+.....
T Consensus 319 ~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~q 398 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQ 398 (708)
T ss_pred cchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhh
Confidence 111 236678999999 34445544222221111000 00000000000 000111112334
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc-------------cCCCCCeEEEEec
Q 005436 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS-------------KKNSSGLIILPLY 316 (697)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~-------------~~~~~~~~v~~lh 316 (697)
+|...+..-.+-.....+..........+++||+.+.+.++.-++++.+.+... ..-..+..++.+|
T Consensus 399 ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLH 478 (708)
T KOG0348|consen 399 RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLH 478 (708)
T ss_pred ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEec
Confidence 455455555555556666666666677789999999999999888887765330 0111245689999
Q ss_pred CCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCC
Q 005436 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (697)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR 396 (697)
|+|++++|..+|+.|.....-|++||+++++|+|+|+|++||.++. |.|.++|+||+||+.|
T Consensus 479 Gsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~------------------P~s~adylHRvGRTAR 540 (708)
T KOG0348|consen 479 GSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP------------------PFSTADYLHRVGRTAR 540 (708)
T ss_pred CchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC------------------CCCHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999444 8899999999999999
Q ss_pred C-CCcEEEEcc--ChhHhhhhCC
Q 005436 397 V-RPGKCYRLY--TEEYFVKEIP 416 (697)
Q Consensus 397 ~-~~G~~~~l~--~~~~~~~~~~ 416 (697)
. ..|.++.+. ++.+|.+.+.
T Consensus 541 aG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 541 AGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred ccCCCceEEEecccHHHHHHHHH
Confidence 8 566655444 4666766333
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=3.5e-31 Score=301.12 Aligned_cols=310 Identities=16% Similarity=0.188 Sum_probs=207.9
Q ss_pred HHHhcCCC--cHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHH-
Q 005436 43 EKQRQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS- 113 (697)
Q Consensus 43 ~~~r~~lP--i~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~- 113 (697)
......|| +...|++++..+.++ .+.+++||||||||......++.. ...+.++++++|++.|+.|....
T Consensus 252 ~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~l 330 (681)
T PRK10917 252 KKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYENL 330 (681)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHHH
Confidence 34444454 888999999988776 379999999999994333223222 23467899999999999885433
Q ss_pred -HHHHHhCCcceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHH
Q 005436 114 -RVAEEMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLL 187 (697)
Q Consensus 114 -~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l 187 (697)
.+....|.+++..+|.....+. ....+..+|+|+|++.+.. ...+.++++|||||+|..+.. ..
T Consensus 331 ~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr 400 (681)
T PRK10917 331 KKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QR 400 (681)
T ss_pred HHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HH
Confidence 3445567777777774331111 1112268999999986632 234789999999999953221 12
Q ss_pred HHHHHhCCCceEEEecccccHHHHHHH-hhcCcCCCCCcccccCCCCCCcEE-EeccceeeeEEEecCCCcchHHHHHHH
Q 005436 188 KKIQRCRSDLRLIISSATIEAKSMSAF-FHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (697)
Q Consensus 188 ~~~~~~~~~~~ii~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (697)
..+.....+.++++||||+.+..+... ++.... ..+ ..+....++...+...... .....
T Consensus 401 ~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~---------------s~i~~~p~~r~~i~~~~~~~~~~---~~~~~ 462 (681)
T PRK10917 401 LALREKGENPHVLVMTATPIPRTLAMTAYGDLDV---------------SVIDELPPGRKPITTVVIPDSRR---DEVYE 462 (681)
T ss_pred HHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCce---------------EEEecCCCCCCCcEEEEeCcccH---HHHHH
Confidence 223333446789999999966655432 222110 011 1122123444444443322 22233
Q ss_pred HHHHHHhcCCCCcEEEEcCCHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 266 TVLLIHDKEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
.+.... ..+++++||||..+ .++.+++.|.+.+ ++..+..+||+|++++|+++++.|++|+.+
T Consensus 463 ~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 463 RIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred HHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 333322 35678999999654 3455566665542 347899999999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
|||||+++++|+|+|++++||.++ ++. .+.+++.||+||+||. .+|.||.+++
T Consensus 534 ILVaT~vie~GiDip~v~~VIi~~--------~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 534 ILVATTVIEVGVDVPNATVMVIEN--------AER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEECcceeeCcccCCCcEEEEeC--------CCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999999843 332 1346677999999999 7899999995
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=4e-31 Score=295.15 Aligned_cols=343 Identities=17% Similarity=0.166 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhccc-c-CCCeEEEEECccHHHHHH--HHHHHHHHh---
Q 005436 48 RLPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGW-A-DGGRVIACTQPRRLAVQA--VASRVAEEM--- 119 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~-~~ii~apTGsGKT~~lp~~l~~~~~-~-~~~~~Ivv~p~r~l~~~~--~~~~~~~~~--- 119 (697)
....+++|.+++..+.+++ ++++.+|||||||..+..+++.... . ...+.|+++|+|+|+.|. ..+.+.+.+
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 3448899999999999987 6778899999999544333332211 1 123456688999999883 334455443
Q ss_pred --------------------CCcceeEEeeEee-cCCcCCCCCceEEEechHHHHHHHhcC-------------CCCCCC
Q 005436 120 --------------------GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD-------------PLLTKY 165 (697)
Q Consensus 120 --------------------~~~~~~~~g~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~-------------~~l~~~ 165 (697)
++++...+|.... .+.......++|+|+|++.+.+..... ..+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v 172 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQD 172 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccc
Confidence 2444555563222 111222336899999987665443310 126889
Q ss_pred cEEEEeCCCcCCcChhHHHHHHHHHHHh--CCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEec
Q 005436 166 SVIMVDEAHERSISTDILLGLLKKIQRC--RSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVE 241 (697)
Q Consensus 166 ~~iIiDE~Her~~~~d~l~~~l~~~~~~--~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (697)
+++|+||||......+.+..+++.+... ..+.|+++||||++.+ .+...+...+. .+.+.
T Consensus 173 ~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~----------------~i~V~ 236 (844)
T TIGR02621 173 ALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY----------------KHPVL 236 (844)
T ss_pred eEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc----------------eeecc
Confidence 9999999994333223333333321101 1236899999999543 33333332221 11111
Q ss_pred ccee---eeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC
Q 005436 242 GRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG 318 (697)
Q Consensus 242 ~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~ 318 (697)
.+.. .+.. +............+..+.... ...++++||||+|+++++.+++.|.+. ++ ..+||+
T Consensus 237 ~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~ 303 (844)
T TIGR02621 237 KKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGT 303 (844)
T ss_pred cccccccceEE-EEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCC
Confidence 1100 1111 222121222222233332222 235678999999999999999999754 33 889999
Q ss_pred CCHHHHh-----hccCCCCC----CC-------cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccccccccc
Q 005436 319 LSRAEQE-----QVFSPTPR----GK-------RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (697)
Q Consensus 319 l~~~~r~-----~v~~~f~~----g~-------~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~ 382 (697)
|++.+|. ++++.|++ |. .+|||||+++|+||||+. ++||+. ..
T Consensus 304 m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d--------------------~a 362 (844)
T TIGR02621 304 LRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD--------------------LA 362 (844)
T ss_pred CCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC--------------------CC
Confidence 9999999 77888876 43 789999999999999997 666652 12
Q ss_pred CHHhHHHhhcccCCCCC--cEEEEccChhHhhhhCCCCCCCcccccchhHHHHHHHHcCC
Q 005436 383 SKASARQRAGRAGRVRP--GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGI 440 (697)
Q Consensus 383 S~~~~~Qr~GRaGR~~~--G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~ 440 (697)
+..+|+||+||+||.+. |..+.++..+.....-...-.|+++...+..+.+.....|.
T Consensus 363 P~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~ 422 (844)
T TIGR02621 363 PFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGK 422 (844)
T ss_pred CHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 35799999999999832 33344443321111011112356777666555554444443
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=9e-31 Score=296.00 Aligned_cols=315 Identities=14% Similarity=0.144 Sum_probs=204.6
Q ss_pred HHHHhcCCC--cHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHH-
Q 005436 42 IEKQRQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA- 112 (697)
Q Consensus 42 ~~~~r~~lP--i~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~- 112 (697)
+......|| ++..|++++..+.++ .+.+++||||||||..+...++.. ...+.++++++|++.|+.|...
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNS 303 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHH
Confidence 344445565 788898888888665 258999999999995433322222 2246689999999999987543
Q ss_pred -HHHHHHhCCcceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHH
Q 005436 113 -SRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGL 186 (697)
Q Consensus 113 -~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~ 186 (697)
+.+....|.+++..+|.....+. ....+..+|+|+|++.+.. ...+.++++|||||+|..+.. ....
T Consensus 304 ~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~--qr~~- 376 (630)
T TIGR00643 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVE--QRKK- 376 (630)
T ss_pred HHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHH--HHHH-
Confidence 23344456777777774322110 1112267999999987643 234788999999999953322 1111
Q ss_pred HHHHHHhCCCceEEEecccccHHHHHHHh-hcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHH
Q 005436 187 LKKIQRCRSDLRLIISSATIEAKSMSAFF-HARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (697)
Q Consensus 187 l~~~~~~~~~~~ii~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (697)
+........+.++++||||+.+..+.... +.... .. +-..+....++...+...... .....
T Consensus 377 l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~-~~-------------i~~~p~~r~~i~~~~~~~~~~---~~~~~ 439 (630)
T TIGR00643 377 LREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDT-SI-------------IDELPPGRKPITTVLIKHDEK---DIVYE 439 (630)
T ss_pred HHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcce-ee-------------eccCCCCCCceEEEEeCcchH---HHHHH
Confidence 11111111267899999998655544322 21110 00 111122123444444433221 22222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 266 TVLLIHDKEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
.+.... ..+++++|||+..+ .++.+++.|.+.+ ++..+..+||+|++++|..+++.|++|+.+
T Consensus 440 ~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 510 (630)
T TIGR00643 440 FIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVD 510 (630)
T ss_pred HHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 222221 24678999999764 4455566665432 478899999999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
|||||+++++|||+|++++||..+. +. .+.+++.||+||+||. .+|.||.++.
T Consensus 511 ILVaT~vie~GvDiP~v~~VIi~~~--------~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 511 ILVATTVIEVGVDVPNATVMVIEDA--------ER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEEECceeecCcccCCCcEEEEeCC--------Cc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999997433 22 2456788999999998 7999999983
No 60
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.2e-31 Score=258.50 Aligned_cols=339 Identities=20% Similarity=0.199 Sum_probs=238.6
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHh--ccccCCCeEEEEECc
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE--AGWADGGRVIACTQP 103 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~--~~~~~~~~~Ivv~p~ 103 (697)
+|..+.++++..+.+...+..-|- ..|+..+..+..+ +++|.++..|+|||+....-++. .......++++++|+
T Consensus 91 sFeeL~LkPellkgly~M~F~kPs-kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 91 SFEELRLKPELLKGLYAMKFQKPS-KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred cHHhhCCCHHHHhHHHHhccCCcc-hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 444444555555555555555554 4566667777654 78999999999999544433332 222234567999999
Q ss_pred cHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCC--CCCceEEEechHHHHHHHhc-CC-CCCCCcEEEEeCCCcCCcC
Q 005436 104 RRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN--KDLTAIKFLTDGVLLREMMD-DP-LLTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 104 r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~I~v~T~~~Ll~~l~~-~~-~l~~~~~iIiDE~Her~~~ 179 (697)
|+|+.|.. .+-.++|-..+....|.++...... .-..+|+++|||.+++++.. .. .+..+.++|+|||+ .+++
T Consensus 170 rELA~Q~~--eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~ 246 (477)
T KOG0332|consen 170 RELAPQTG--EVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMID 246 (477)
T ss_pred HHHHHHHH--HHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhh
Confidence 99998743 2455666555556667777653222 12578999999999998876 33 38899999999999 3444
Q ss_pred hh-HHHHHHHHHHHhCCCceEEEeccccc--HHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc---ceeeeEEEecC
Q 005436 180 TD-ILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNVQIHYVE 253 (697)
Q Consensus 180 ~d-~l~~~l~~~~~~~~~~~ii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~ 253 (697)
+. +...-++......++.+++++|||.+ ...|+.-+-..+. .+.+.. ...++..+|..
T Consensus 247 tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n----------------~i~Lk~eel~L~~IkQlyv~ 310 (477)
T KOG0332|consen 247 TQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN----------------VIILKREELALDNIKQLYVL 310 (477)
T ss_pred cccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc----------------eeeeehhhccccchhhheee
Confidence 43 22222222233446899999999983 3334332221110 222222 23567777777
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
...++. ....+..+.....-|+.+|||.+++.+..++..+... |+.|..+||+|.-++|..+++.|+.
T Consensus 311 C~~~~~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~ 378 (477)
T KOG0332|consen 311 CACRDD---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAIIDRFRE 378 (477)
T ss_pred ccchhh---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHHHHHHhc
Confidence 665543 3444455555556688999999999999999999876 8999999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
|.-+|||+||+.++|+|++.|++||++++ +.... ...+...|.||+||+||. +.|.++.|+....
T Consensus 379 g~~kVLitTnV~ARGiDv~qVs~VvNydl--------P~~~~----~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 379 GKEKVLITTNVCARGIDVAQVSVVVNYDL--------PVKYT----GEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred CcceEEEEechhhcccccceEEEEEecCC--------ccccC----CCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 99999999999999999999999999665 32221 136788999999999999 8899999987543
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=6.2e-31 Score=308.87 Aligned_cols=311 Identities=17% Similarity=0.163 Sum_probs=205.7
Q ss_pred HHHhcCCC--cHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH
Q 005436 43 EKQRQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (697)
Q Consensus 43 ~~~r~~lP--i~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~ 114 (697)
.++-.++| ..+.|.++++.+.++ .+++++|+||+|||.++...+... ...+.++++++|++.|+.|.....
T Consensus 591 ~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f 669 (1147)
T PRK10689 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNF 669 (1147)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHH
Confidence 33334444 777888888888776 789999999999994433222221 235678999999999998855442
Q ss_pred H--HHHhCCcceeEEeeEeecCCc-----CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHH
Q 005436 115 V--AEEMGVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLL 187 (697)
Q Consensus 115 ~--~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l 187 (697)
. ....++++....|+....+.. ...+..+|+|+||+.+ ..+..+.++++|||||+|..+.. ..
T Consensus 670 ~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~------~~ 739 (1147)
T PRK10689 670 RDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR------HK 739 (1147)
T ss_pred HHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh------HH
Confidence 2 122344555555533221111 1112579999999744 22334788999999999954221 22
Q ss_pred HHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc-ceeeeEEEecCCCcchHHHHHHHH
Q 005436 188 KKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVST 266 (697)
Q Consensus 188 ~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 266 (697)
..+....++.++++||||+....+........ .+..+..+. ...+++........... ...
T Consensus 740 e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~--------------d~~~I~~~p~~r~~v~~~~~~~~~~~~----k~~ 801 (1147)
T PRK10689 740 ERIKAMRADVDILTLTATPIPRTLNMAMSGMR--------------DLSIIATPPARRLAVKTFVREYDSLVV----REA 801 (1147)
T ss_pred HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCC--------------CcEEEecCCCCCCCceEEEEecCcHHH----HHH
Confidence 33444567899999999986654432221111 001222221 11233333322111111 111
Q ss_pred HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccc
Q 005436 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (697)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e 346 (697)
+.... ..+++++|||++++.++.+++.|.+.. ++..+..+||+|++++|.+++..|++|+.+|||||++++
T Consensus 802 il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIie 872 (1147)
T PRK10689 802 ILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 (1147)
T ss_pred HHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhh
Confidence 11111 246789999999999999999998764 367889999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccCh
Q 005436 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (697)
Q Consensus 347 ~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~ 408 (697)
+|+|+|++++||.. ++. ..+.++|.||+||+||. ..|.||.+++.
T Consensus 873 rGIDIP~v~~VIi~--------~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 873 TGIDIPTANTIIIE--------RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccccccCCEEEEe--------cCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999941 111 12335688999999999 88999998864
No 62
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=6.3e-31 Score=284.60 Aligned_cols=338 Identities=20% Similarity=0.263 Sum_probs=213.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh-ccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc--c
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--V 123 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~-~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~--~ 123 (697)
..+++..||.++.+... ++++||++|||+|||+++...+.+ ..+.+++++|+.+|++-|..|+.+. +.. ++.. +
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~-~~~-~~~~~~~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIAC-FSI-YLIPYSV 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHH-Hhh-ccCcccc
Confidence 57899999999999888 999999999999999777666554 3455678999999999999998843 332 3322 1
Q ss_pred eeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceE
Q 005436 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRL 199 (697)
Q Consensus 124 ~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~i 199 (697)
....|.+...... .--...+|.|+||+.|.+.+..... ++.+.++|||||| |.........+.+.+.. .....|+
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccE
Confidence 1111211111111 1112689999999999988866433 7889999999999 44333333444444443 3334499
Q ss_pred EEecccc--cHHHHHHHhhcCcCCCCCccccc-------------CC---------------------------------
Q 005436 200 IISSATI--EAKSMSAFFHARKGRRGLEGVEL-------------VP--------------------------------- 231 (697)
Q Consensus 200 i~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------------------------------- 231 (697)
+++|||+ +.+...++..+....-+.+.... .+
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 9999999 66666666543221111100000 00
Q ss_pred ---C--CCCcEEEecc---ceeeeEEE---ec------------------------------CCCc--------------
Q 005436 232 ---R--LEPAILSVEG---RGFNVQIH---YV------------------------------EEPV-------------- 256 (697)
Q Consensus 232 ---~--~~~~~~~~~~---~~~~v~~~---~~------------------------------~~~~-------------- 256 (697)
. ....++..+. ...+-..+ +. ....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 0 0000000000 00000000 00 0000
Q ss_pred -------------------chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEec-
Q 005436 257 -------------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY- 316 (697)
Q Consensus 257 -------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh- 316 (697)
...++.....+.......+..++|||+.+|+.+..+.+.|.+.... ...+...++.-+
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKS 452 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeecccc
Confidence 0001111222223334456678999999999999999999853210 011222222222
Q ss_pred ---CCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcc
Q 005436 317 ---SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (697)
Q Consensus 317 ---~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GR 393 (697)
.+|++.+|.++++.|++|+.+|||||+++|+|+||++++.||-++. ..+....+||+||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC------------------CccHHHHHHHhcc
Confidence 4899999999999999999999999999999999999999998554 3456667799999
Q ss_pred cCCCCCcEEEEccChh
Q 005436 394 AGRVRPGKCYRLYTEE 409 (697)
Q Consensus 394 aGR~~~G~~~~l~~~~ 409 (697)
||.+.|+|+.|++..
T Consensus 515 -gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTGS 529 (746)
T ss_pred -ccccCCeEEEEEcch
Confidence 999999999999943
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.3e-31 Score=268.31 Aligned_cols=319 Identities=18% Similarity=0.219 Sum_probs=213.6
Q ss_pred CcHHHHHHHHHHHh---------cCCEEEEEcCCCChHH--HHHHHHHHhccc-cCCCeEEEEECccHHHHHH--HHHHH
Q 005436 50 PVYKYRTAILYLVE---------THATTIIVGETGSGKT--TQIPQYLKEAGW-ADGGRVIACTQPRRLAVQA--VASRV 115 (697)
Q Consensus 50 Pi~~~q~~i~~~l~---------~~~~~ii~apTGsGKT--~~lp~~l~~~~~-~~~~~~Ivv~p~r~l~~~~--~~~~~ 115 (697)
-.++.|..++..+. ..+++.|.|||||||| |.+|..-..... -+.-++|+++|++.|+.|- ...++
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 45666766666662 2578999999999999 888865443221 1335789999999999984 34445
Q ss_pred HHHhCCcceeEEeeE-eecCC-----cCCCCCceEEEechHHHHHHHhcCC-C-CCCCcEEEEeCCCcCCcChhH---HH
Q 005436 116 AEEMGVKVGEEVGYT-IRFED-----FTNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMVDEAHERSISTDI---LL 184 (697)
Q Consensus 116 ~~~~~~~~~~~~g~~-~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~-~-l~~~~~iIiDE~Her~~~~d~---l~ 184 (697)
....|..|+...|-. .+.+. .......+|+|+|||+|.+++.+.+ + |.++.++|||||+ |..+..| +.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLD 317 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHH
Confidence 555666666555521 11111 1111235999999999999998644 3 9999999999999 5544322 11
Q ss_pred HHHHH------------HHH-------------------hCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCC
Q 005436 185 GLLKK------------IQR-------------------CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVP 231 (697)
Q Consensus 185 ~~l~~------------~~~-------------------~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (697)
.+... +.. ..+.+..+.+|||+ ++..+.++--..|
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P------------ 385 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP------------ 385 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC------------
Confidence 11111 111 11333466777777 6666666543322
Q ss_pred CCCCcEEEecc---ceeeeE----EEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 005436 232 RLEPAILSVEG---RGFNVQ----IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK 304 (697)
Q Consensus 232 ~~~~~~~~~~~---~~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~ 304 (697)
..+.+.+ -.|.+. ..+..... ......+..........++|+|+++.+.+.+++..|.-.+
T Consensus 386 ----rl~~v~~~~~~ryslp~~l~~~~vv~~~----~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~---- 453 (620)
T KOG0350|consen 386 ----RLFHVSKPLIGRYSLPSSLSHRLVVTEP----KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF---- 453 (620)
T ss_pred ----ceEEeecccceeeecChhhhhceeeccc----ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh----
Confidence 1333322 111110 00000000 0011122333344466789999999999999999998443
Q ss_pred CCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCH
Q 005436 305 KNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (697)
Q Consensus 305 ~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~ 384 (697)
......+-.+.|+++...|.+.++.|..|.++||||++++++|+|+.+|+.||+|+. |.+.
T Consensus 454 -~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~~ 514 (620)
T KOG0350|consen 454 -CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PASD 514 (620)
T ss_pred -ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------Cchh
Confidence 223566677999999999999999999999999999999999999999999999555 7788
Q ss_pred HhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 385 ASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 385 ~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
.+|+||+||++|+ +.|.||.+.+.....
T Consensus 515 ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 515 KTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred hHHHHhhcccccccCCceEEEeeccccch
Confidence 8888999999999 889999999876543
No 64
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=7.5e-32 Score=264.26 Aligned_cols=339 Identities=18% Similarity=0.224 Sum_probs=234.9
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhc--------cccCCCeE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA--------GWADGGRV 97 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~--------~~~~~~~~ 97 (697)
+|..-.|......-+.+ +...--.+.|-+=+..+.++++.|-.|-|||||| |.+|.++... ....+..-
T Consensus 171 sF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~g 249 (610)
T KOG0341|consen 171 SFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYG 249 (610)
T ss_pred hhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCee
Confidence 56666676666555554 3333233445455666789999999999999999 7788765422 11234556
Q ss_pred EEEECccHHHHHH--HHHHHHHHh---C---CcceeEEee-EeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcE
Q 005436 98 IACTQPRRLAVQA--VASRVAEEM---G---VKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSV 167 (697)
Q Consensus 98 Ivv~p~r~l~~~~--~~~~~~~~~---~---~~~~~~~g~-~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~ 167 (697)
++++|.|+|+.|. +...+...+ | .+.+.++|. .++-.-....+..+|+|+|||+|.+.+..+.. +.-..+
T Consensus 250 LiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRy 329 (610)
T KOG0341|consen 250 LIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRY 329 (610)
T ss_pred EEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHH
Confidence 9999999999983 233333222 2 223334442 22222222233789999999999999877765 888999
Q ss_pred EEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeee
Q 005436 168 IMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNV 247 (697)
Q Consensus 168 iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 247 (697)
+.+|||+ |.++..|-..+-..+.......+.+++|||++.. ++.|-....+.. +...-||.-.-
T Consensus 330 L~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~K-IQ~FAkSALVKP--------------vtvNVGRAGAA 393 (610)
T KOG0341|consen 330 LTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKK-IQNFAKSALVKP--------------VTVNVGRAGAA 393 (610)
T ss_pred hhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHH-HHHHHHhhcccc--------------eEEeccccccc
Confidence 9999999 8888877766655555566678899999999654 444433332110 22222322111
Q ss_pred EEEecCCCcchHHHHHHHH--HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 005436 248 QIHYVEEPVSDYVQAAVST--VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (697)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (697)
..... ..-+|+..-... ++.. ......++|||+..+.++..+.++|.-. ++.++.+||+-++++|.
T Consensus 394 sldVi--QevEyVkqEaKiVylLeC-LQKT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 394 SLDVI--QEVEYVKQEAKIVYLLEC-LQKTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIHGGKDQEDRH 461 (610)
T ss_pred chhHH--HHHHHHHhhhhhhhHHHH-hccCCCceEEEeccccChHHHHHHHHHc---------cceeEEeecCcchhHHH
Confidence 10000 011233222222 2222 2335678999999999999999998654 89999999999999999
Q ss_pred hccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEE
Q 005436 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (697)
Q Consensus 326 ~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~ 404 (697)
..++.|+.|+-+|+|||+++..|+|+|++.+|||+++ |-...+|.||+||+||. ..|.+-.
T Consensus 462 ~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg~~GiATT 523 (610)
T KOG0341|consen 462 YAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSGKTGIATT 523 (610)
T ss_pred HHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCCCcceeee
Confidence 9999999999999999999999999999999999766 77778888999999999 8899999
Q ss_pred ccChhHhhh
Q 005436 405 LYTEEYFVK 413 (697)
Q Consensus 405 l~~~~~~~~ 413 (697)
++++..-+.
T Consensus 524 fINK~~~es 532 (610)
T KOG0341|consen 524 FINKNQEES 532 (610)
T ss_pred eecccchHH
Confidence 988765443
No 65
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=252.90 Aligned_cols=337 Identities=20% Similarity=0.191 Sum_probs=236.1
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhccc----cCCCeEEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGW----ADGGRVIA 99 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~--l~~~~~----~~~~~~Iv 99 (697)
+|..+.+-+...+++.+..-+-|..- |+.++..+.++++++..|.|||||| |++|.+ ++.... ..+...++
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlI-Qs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLI-QSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchh-hhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 34445555555566666555556544 5555666667789999999999999 888865 222211 12345699
Q ss_pred EECccHHHHHH--HHHHHHHHhC--CcceeEEe-eEeecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeC
Q 005436 100 CTQPRRLAVQA--VASRVAEEMG--VKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDE 172 (697)
Q Consensus 100 v~p~r~l~~~~--~~~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE 172 (697)
++|||+|+.|. +...+....+ ++...... .........-.+.++|+|+||+.+++.+..+.. +..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999883 3333333332 12111111 000001111224799999999999999988874 88999999999
Q ss_pred CCcCCcChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce----ee
Q 005436 173 AHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG----FN 246 (697)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 246 (697)
|+ ..+...+-..+.+......+..|-++||||+ |...+...|...|. ++...... -.
T Consensus 179 AD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv----------------iLkl~e~el~~~dq 241 (569)
T KOG0346|consen 179 AD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV----------------ILKLTEGELPNPDQ 241 (569)
T ss_pred hh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe----------------EEEeccccCCCccc
Confidence 99 3444444444444444566778999999999 77788888877663 33332221 23
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 005436 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (697)
+..++......|..-... .++. ..--.|++|||+|+.+.+.++.-.|... ++....++|.||..-|..
T Consensus 242 L~Qy~v~cse~DKfllly-allK--L~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 242 LTQYQVKCSEEDKFLLLY-ALLK--LRLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCH 309 (569)
T ss_pred ceEEEEEeccchhHHHHH-HHHH--HHHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccchhh
Confidence 445555444333221111 1111 1224688999999999999998888766 889999999999999999
Q ss_pred ccCCCCCCCcEEEEecC-----------------------------------ccccccCCCCeEEEEecCcccceeecCC
Q 005436 327 VFSPTPRGKRKVVISTN-----------------------------------IAETSLTLEGIVYVVDSGFSKQRFYNPI 371 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~-----------------------------------i~e~Gvdip~v~~VId~g~~k~~~yd~~ 371 (697)
+++.|..|.+.|||||+ -..+|||+..|..|+|+++
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~--------- 380 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF--------- 380 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC---------
Confidence 99999999999999999 1368999999999999888
Q ss_pred CCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 372 SDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 372 ~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|.+..+|+||+||++|. .+|.+..++.+....
T Consensus 381 ---------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 381 ---------PETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred ---------CCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 88999999999999999 899999999876543
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2.8e-28 Score=257.26 Aligned_cols=290 Identities=16% Similarity=0.194 Sum_probs=179.6
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh-------CCcce
Q 005436 54 YRTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-------GVKVG 124 (697)
Q Consensus 54 ~q~~i~~~l~~~~--~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~-------~~~~~ 124 (697)
+|.++++++.+++ +++++||||||||......++. .+.++++++|+++|+.++..+ +...+ +..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~-~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEA-IKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHH-HHHHHHhcCCCCCceEE
Confidence 4788889998775 5899999999999443332332 234679999999999886543 22221 33344
Q ss_pred eEEeeEee----cC----C-------------cCCCCCceEEEechHHHHHHHhc---CC------CCCCCcEEEEeCCC
Q 005436 125 EEVGYTIR----FE----D-------------FTNKDLTAIKFLTDGVLLREMMD---DP------LLTKYSVIMVDEAH 174 (697)
Q Consensus 125 ~~~g~~~~----~~----~-------------~~~~~~~~I~v~T~~~Ll~~l~~---~~------~l~~~~~iIiDE~H 174 (697)
...|.... .. . ......+.|+++||+++...+.. .+ .+.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 44442110 00 0 00111467888889888754432 11 25789999999999
Q ss_pred cCCcChh-HHH---HHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc-------
Q 005436 175 ERSISTD-ILL---GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR------- 243 (697)
Q Consensus 175 er~~~~d-~l~---~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 243 (697)
..+.... .+. .....+.......++++||||++.. +.+.+....... .++..++|+
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~------------~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAG------------VKIAPIDGEKYQFPDN 222 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccC------------ceeeeecCcccccCCC
Confidence 7664332 222 2233233233357999999999765 333333210000 002222222
Q ss_pred ----------e-----eeeEEEecCCC--cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCC
Q 005436 244 ----------G-----FNVQIHYVEEP--VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN 306 (697)
Q Consensus 244 ----------~-----~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~ 306 (697)
. -+++..+.... ..+.+......+........++++||||++++.++.+++.|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------ 296 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------ 296 (357)
T ss_pred hhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC------
Confidence 0 02333333211 112222333334343434466789999999999999999997641
Q ss_pred CCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHh
Q 005436 307 SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (697)
Q Consensus 307 ~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~ 386 (697)
.+..+..+||.+++.+|.++. +.+|+|||+++++|||+|.+.+|++ |.+..+
T Consensus 297 -~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~ 348 (357)
T TIGR03158 297 -LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAA 348 (357)
T ss_pred -CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHH
Confidence 145788899999999997653 6789999999999999998744332 567889
Q ss_pred HHHhhcccC
Q 005436 387 ARQRAGRAG 395 (697)
Q Consensus 387 ~~Qr~GRaG 395 (697)
|+||+||+|
T Consensus 349 yiqR~GR~g 357 (357)
T TIGR03158 349 FWQRLGRLG 357 (357)
T ss_pred HhhhcccCC
Confidence 999999998
No 67
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.1e-29 Score=249.19 Aligned_cols=336 Identities=21% Similarity=0.249 Sum_probs=251.9
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
.+|.+..++....+.+..+.-+-|-.-+|..|+..+ ++.++++++.+|+||| +.++.+..-..-.....+++++|+|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 467777777777788888888889988888888777 5677999999999999 3333222212112234679999999
Q ss_pred HHHHHHH--HHHHHHHhCCcceeEEeeEeec-CC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 105 RLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 105 ~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
+|+.|.. ...+....+..+..++|..... +. .......+|+++|||.++..+....+ ...+.++|+||++|. +.
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls 183 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LS 183 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hc
Confidence 9998844 3344555666776677744433 22 23333689999999999998877665 667999999999964 44
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEecCC
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVEE 254 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 254 (697)
.++...+...+....++.|++++|||++.+ .+.+-|...+.. +.+.... .-++.+|...
T Consensus 184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~----------------i~vkk~~ltl~gikq~~i~v 247 (397)
T KOG0327|consen 184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVR----------------ILVKKDELTLEGIKQFYINV 247 (397)
T ss_pred cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceE----------------EEecchhhhhhheeeeeeec
Confidence 556666666667788899999999999554 445555554421 2111111 1233344333
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
.... .+..+..++. .-.+.+|||++++.+..+...|... +..+..+||.|.+.+|..+...|+.|
T Consensus 248 ~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~g 312 (397)
T KOG0327|consen 248 EKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSG 312 (397)
T ss_pred cccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcC
Confidence 3222 4555555555 4567899999999999999999554 88999999999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
..+|||+|+.+++|+|+-.+..||++.+ |..+.+|+||+||+||. .+|.++.++++++...
T Consensus 313 ssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 313 SSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred CceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 9999999999999999999999999666 77788999999999999 8999999999877655
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=1.6e-28 Score=261.96 Aligned_cols=299 Identities=19% Similarity=0.205 Sum_probs=185.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEe------e-----cC
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTI------R-----FE 134 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~------~-----~~ 134 (697)
+++|+||||||||.+...+++.... ..+.++++++|++.|+.| ..+++...++..++...|... . .+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q-~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINA-MYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHH-HHHHHHHHhCcccEEeeccHHHHHHhccCCchhHH
Confidence 4799999999999766665554321 234678999999988875 445566666655554444111 0 00
Q ss_pred Cc-----C---CCCCceEEEechHHHHHHHhcCCC-------CCCCcEEEEeCCCcCCcC-hhHHHHHHHHHHHhCCCce
Q 005436 135 DF-----T---NKDLTAIKFLTDGVLLREMMDDPL-------LTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 135 ~~-----~---~~~~~~I~v~T~~~Ll~~l~~~~~-------l~~~~~iIiDE~Her~~~-~d~l~~~l~~~~~~~~~~~ 198 (697)
.. . ......|+++||+.++..+..... .-..++|||||+|..... .+.+..+++.+. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCC
Confidence 00 0 001467999999999887665210 113489999999954422 233444444333 34788
Q ss_pred EEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCc
Q 005436 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (697)
Q Consensus 199 ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (697)
+++||||++ +.+.+++............... . .-.. ..++... ......... .....+.... ..+++
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~---~--~~~~--~~~~~~~--~~~~~~~~~-~~l~~l~~~~--~~~~~ 224 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNEPLDLK---E--ERRF--ERHRFIK--IESDKVGEI-SSLERLLEFI--KKGGK 224 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcccccCCCCc---c--cccc--cccccee--eccccccCH-HHHHHHHHHh--hCCCe
Confidence 999999997 4466666543211000000000 0 0000 0011100 011000111 1122222221 34678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc----cCCCCCCCcEEEEecCccccccCCCCe
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV----FSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v----~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
+||||+++++++.+++.|.+.. ....+..+||++++.+|.++ ++.|++|+.+|||||+++++|+|+| +
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~ 296 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-A 296 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-C
Confidence 9999999999999999998752 23469999999999999764 8899999999999999999999997 6
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCC--C---cEEEEccChh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR--P---GKCYRLYTEE 409 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~--~---G~~~~l~~~~ 409 (697)
++||.. +.+..+|+||+||+||.+ . |.+|.+....
T Consensus 297 ~~vi~~--------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 297 DVMITE--------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CEEEEc--------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 677652 345678999999999972 2 3677776544
No 69
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=3.5e-28 Score=268.47 Aligned_cols=433 Identities=17% Similarity=0.166 Sum_probs=275.5
Q ss_pred cHHHHHHHHHHH-hcCCEEEEEcCCCChHHHHHHH-HHHhccc--c-------CCCeEEEEECccHHHHHHHHH--HHHH
Q 005436 51 VYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQ-YLKEAGW--A-------DGGRVIACTQPRRLAVQAVAS--RVAE 117 (697)
Q Consensus 51 i~~~q~~i~~~l-~~~~~~ii~apTGsGKT~~lp~-~l~~~~~--~-------~~~~~Ivv~p~r~l~~~~~~~--~~~~ 117 (697)
+...|..+..+. ....++++|||||+|||-.+.. ++.+... + ...+++|++|.++|++..+.. +-..
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 455566665554 4568999999999999933332 2222111 1 123689999999999876552 2234
Q ss_pred HhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHH-
Q 005436 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERS-ISTDILLGLLKKIQR- 192 (697)
Q Consensus 118 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~- 192 (697)
.+|+.|+..+|..... ......++|+++||+...-.-..+. ..+-++++||||+|-.. -....+..+..+...
T Consensus 390 ~~GI~V~ElTgD~~l~--~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ 467 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLG--KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRR 467 (1674)
T ss_pred ccCcEEEEecccccch--hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHH
Confidence 5688888888843321 1112279999999998754333322 25568999999999221 122244444433332
Q ss_pred ---hCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHH--HH--
Q 005436 193 ---CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA--AV-- 264 (697)
Q Consensus 193 ---~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~-- 264 (697)
.....+++++|||+ |.++++.|+...+.. ...+...-|+.|++..|......+.... +.
T Consensus 468 ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~g-------------lf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe 534 (1674)
T KOG0951|consen 468 SESTEEGSRLVGLSATLPNYEDVASFLRVDPEG-------------LFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNE 534 (1674)
T ss_pred hhhcccCceeeeecccCCchhhhHHHhccCccc-------------ccccCcccCcCCccceEeccccCCchHHHHHHHH
Confidence 34678999999999 888888887654410 0022234456677777766544433222 11
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh----------c------------------cCCCCCeEEEEec
Q 005436 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------S------------------KKNSSGLIILPLY 316 (697)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~----------~------------------~~~~~~~~v~~lh 316 (697)
....++......+++|||+.++++.-+.|+.+++.+-. - .++...+.++.||
T Consensus 535 ~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHh 614 (1674)
T KOG0951|consen 535 ACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHH 614 (1674)
T ss_pred HHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeec
Confidence 11223344455689999999999999999999854321 0 0122346799999
Q ss_pred CCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCC
Q 005436 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (697)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR 396 (697)
+||+..+|..+++.|++|.++|+|+|.++++|||+|+-+++|- ...+|||..|.-. +.|..+.+||.|||||
T Consensus 615 AGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 615 AGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGR 686 (1674)
T ss_pred cCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999888883 4678999987643 7799999999999999
Q ss_pred C-----CCcEEEEccChhHhhh-hCCCC-CCCcccccchhHHHHHHHHcCCCCccCC-CC----------C---------
Q 005436 397 V-----RPGKCYRLYTEEYFVK-EIPAE-GIPEMQRSNLVSCVIQLKALGIDNILGF-DW----------P--------- 449 (697)
Q Consensus 397 ~-----~~G~~~~l~~~~~~~~-~~~~~-~~pei~~~~l~~~~L~l~~~~~~~~~~~-~~----------~--------- 449 (697)
. +.|+.+.=+++-.|.- .|.+. ++++-.-..|...+-.-+.+|+.+..+- +| +
T Consensus 687 p~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~ 766 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVS 766 (1674)
T ss_pred CccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCC
Confidence 8 3455555455443322 12221 2222222223222222223333221110 01 1
Q ss_pred ----CCCC----HHHHHHHHHHHHHcCCccCC---C--CCChHhhcccccCCCChhhHHHHHhhcccCChH
Q 005436 450 ----ASPP----PEAMIRALEVLYSLGVLDDD---A--KLTSPTGFQVAEIPLEPMISKMILSSNELGCSE 507 (697)
Q Consensus 450 ----~~p~----~~~~~~a~~~L~~lgald~~---~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~ 507 (697)
|++. .+.+..|.-.|...|.|--+ | ..| .+|++.+.+.+.-......-.....-|.+
T Consensus 767 ~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~t-elg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 767 PEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQAT-ELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred cccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccch-hhccccceeeeecchHHHHHhhhhhhhcc
Confidence 1121 14467788899999988532 2 578 49999999999877766665555444444
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=4e-28 Score=267.79 Aligned_cols=311 Identities=13% Similarity=0.069 Sum_probs=192.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc---ce
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VG 124 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~---~~ 124 (697)
...++++|.+.+..+..++..++++|||+|||..+..++.........++++++|+++|+.|...+ +.+..... +.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~-l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDD-FVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHH-HHHhcccccccee
Confidence 357888999988888888889999999999996554433221112334799999999999875443 44333221 11
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
...|.. .... ..+|+|+|++.+.+.. ..++.++++||+||||.. .. ..+..+++. ..+..+++++||
T Consensus 191 ~i~~g~-----~~~~-~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~-~~-~~~~~il~~---~~~~~~~lGLTA 257 (501)
T PHA02558 191 KIYSGT-----AKDT-DAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLF-TG-KSLTSIITK---LDNCKFKFGLTG 257 (501)
T ss_pred EEecCc-----ccCC-CCCEEEeeHHHHhhch--hhhccccCEEEEEchhcc-cc-hhHHHHHHh---hhccceEEEEec
Confidence 122211 1112 5789999999987643 224789999999999943 22 222333322 223456899999
Q ss_pred cccHHH-----HHHHhhcCcCCCCCcccccCCCC-CCcEEEeccceeee--E----EEecCC-----CcchHHHHHHHHH
Q 005436 205 TIEAKS-----MSAFFHARKGRRGLEGVELVPRL-EPAILSVEGRGFNV--Q----IHYVEE-----PVSDYVQAAVSTV 267 (697)
Q Consensus 205 T~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v--~----~~~~~~-----~~~~~~~~~~~~~ 267 (697)
|+.... +..+|+................. .+.+..+..+..+. . ..|... ............+
T Consensus 258 Tp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 258 SLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred cCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 993221 23345432211100000000000 00011100000000 0 000000 0000011111122
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEec-Cccc
Q 005436 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST-NIAE 346 (697)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT-~i~e 346 (697)
..+. ..++++|||+.+.++++.+++.|.+. +..+..+||+++.++|..+++.|++|+..||||| ++++
T Consensus 338 ~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 338 LKLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 2222 34677999999999999999999875 6789999999999999999999999999999998 8999
Q ss_pred cccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcE
Q 005436 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (697)
Q Consensus 347 ~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~ 401 (697)
+|+|+|++++||.... +.|...|.||+||+||..+|+
T Consensus 407 eG~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9999999999997443 557788899999999996653
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=279.80 Aligned_cols=327 Identities=21% Similarity=0.241 Sum_probs=224.8
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH--HHHHhC-
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMG- 120 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~--~~~~~~- 120 (697)
+....+|.||.+.++.+.+++++||+.||||||| |++|.+-... .....++|++.|+++|+..|+.+. +....+
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 3444599999999999999999999999999999 7777543222 223457899999999999877553 334444
Q ss_pred -CcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCC-----CCCCCcEEEEeCCC-cCCcChhHHHHHHHHHHH
Q 005436 121 -VKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAH-ERSISTDILLGLLKKIQR 192 (697)
Q Consensus 121 -~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~-----~l~~~~~iIiDE~H-er~~~~d~l~~~l~~~~~ 192 (697)
+..+...|.....+. ......++|++++|++|...+.... .+.++++||+||+| -|+....-+..+++++..
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~ 224 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLR 224 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHH
Confidence 344444453332222 1112379999999999988655432 27889999999999 345555455556666554
Q ss_pred ----hCCCceEEEecccc-cHHHHH-HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC---------cc
Q 005436 193 ----CRSDLRLIISSATI-EAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP---------VS 257 (697)
Q Consensus 193 ----~~~~~~ii~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~ 257 (697)
...++++|++|||+ ++..+. ++++..... .+.-.+.......+....+ ..
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~---------------~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV---------------PVDEDGSPRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCccee---------------eccCCCCCCCceEEEEeCCcchhhhhhccc
Confidence 33589999999999 555554 555443211 0111111111111111111 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
+........+.... ..+-++|+|+.++..++.++........... ......+..++|++.+++|.+++..|+.|+..
T Consensus 290 s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 290 SALAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred chHHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 11111111111122 2466799999999999999866655544333 23346789999999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCccccccccc-CHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI-SKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~-S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
++++||.++-|+||.+++.||.+|+ |. |..+++||+|||||. +.+..+..+..+
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999988 77 899999999999999 466666665544
No 72
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.1e-29 Score=265.53 Aligned_cols=323 Identities=18% Similarity=0.168 Sum_probs=231.5
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEee
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~ 129 (697)
-+.++|...+..+.+++.++|+|.|.+|||..+.-.+. ..+..+.++||-+|-++|..|.+.+...+.. +||..+|.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF~--DVGLMTGD 205 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEFK--DVGLMTGD 205 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHhc--ccceeecc
Confidence 48899999999999999999999999999944443333 3344567899999999999998877555443 46677772
Q ss_pred EeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC-----cCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
-..++ .+..+|+|+++|...+.++.. .+.+.+||+||+| ||++-- -.-+.-...+++.|++|
T Consensus 206 -----VTInP-~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVW------EETIIllP~~vr~VFLS 273 (1041)
T KOG0948|consen 206 -----VTINP-DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVW------EETIILLPDNVRFVFLS 273 (1041)
T ss_pred -----eeeCC-CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceee------eeeEEeccccceEEEEe
Confidence 22334 788999999999988877655 8999999999999 444211 11122356789999999
Q ss_pred ccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCC----------Cc----chHHHHHHH---
Q 005436 204 ATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE----------PV----SDYVQAAVS--- 265 (697)
Q Consensus 204 AT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~----~~~~~~~~~--- 265 (697)
||+ |+..|++|....... +..++..+-|+.|...+..+. .. .+-...+..
T Consensus 274 ATiPNA~qFAeWI~~ihkQ------------PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 274 ATIPNARQFAEWICHIHKQ------------PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred ccCCCHHHHHHHHHHHhcC------------CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 999 899999998765422 223555556665655442221 00 111111111
Q ss_pred -------------------------------HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh------------
Q 005436 266 -------------------------------TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART------------ 302 (697)
Q Consensus 266 -------------------------------~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~------------ 302 (697)
.+..........+++||+-++++|+..|-.+.+..-+
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 1222222334568999999999999988776543111
Q ss_pred ------ccC---CCCC---------eEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCccc
Q 005436 303 ------SKK---NSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (697)
Q Consensus 303 ------~~~---~~~~---------~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k 364 (697)
+.. ..|. -.++.|||||-+--++-|+-.|.+|-+|+|+||.+++.|+|.|+-++|+- .
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~ 497 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----A 497 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----e
Confidence 111 1111 14889999999999999999999999999999999999999998777762 3
Q ss_pred ceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChh
Q 005436 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEE 409 (697)
Q Consensus 365 ~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~ 409 (697)
.+.||... -.|+|..+|+||.|||||. ..|.|+.++++.
T Consensus 498 ~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 498 VRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 44466543 2399999999999999998 679999999854
No 73
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.5e-29 Score=258.62 Aligned_cols=310 Identities=19% Similarity=0.239 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcccc-----CCCeEEEEECccHHHHHHHHHHHHHH----hCCcc
Q 005436 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAEE----MGVKV 123 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~-----~~~~~Ivv~p~r~l~~~~~~~~~~~~----~~~~~ 123 (697)
|..++..+..+++++.||||||||| +.+|.+....... .+-+++|+.|+|.|++|...+...-. .+...
T Consensus 163 q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a 242 (593)
T KOG0344|consen 163 QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRA 242 (593)
T ss_pred cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhh
Confidence 4467888889999999999999999 7788664432221 23467999999999998665532211 11111
Q ss_pred eeEEe--eEeecCCcCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH--hCCC
Q 005436 124 GEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKIQR--CRSD 196 (697)
Q Consensus 124 ~~~~g--~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~--~~~~ 196 (697)
..... +.............+|++.||-.+...+...+ .+..+.++|+||++ +......+...+..+.. ..++
T Consensus 243 ~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~ 321 (593)
T KOG0344|consen 243 AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPD 321 (593)
T ss_pred hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcc
Confidence 11111 11111111122267899999999999888775 48999999999999 44444333333333333 4478
Q ss_pred ceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eee--EEEecCCCcchHHHHHHHHHHH
Q 005436 197 LRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNV--QIHYVEEPVSDYVQAAVSTVLL 269 (697)
Q Consensus 197 ~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v--~~~~~~~~~~~~~~~~~~~~~~ 269 (697)
+++=++|||. +.+.+++....... .+.+..+. ..+ +..|..... ...-.+..
T Consensus 322 i~~a~FSat~~~~VEE~~~~i~~~~~----------------~vivg~~~sa~~~V~QelvF~gse~-----~K~lA~rq 380 (593)
T KOG0344|consen 322 IRVALFSATISVYVEEWAELIKSDLK----------------RVIVGLRNSANETVDQELVFCGSEK-----GKLLALRQ 380 (593)
T ss_pred hhhhhhhccccHHHHHHHHHhhccce----------------eEEEecchhHhhhhhhhheeeecch-----hHHHHHHH
Confidence 8889999998 44444444333321 11111110 011 112221111 12223344
Q ss_pred HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcccccc
Q 005436 270 IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (697)
Q Consensus 270 ~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gv 349 (697)
+....-..++|||+.+.+.+.++...|... .++.|..+||..++.+|.+.++.|+.|++.|++||+++++|+
T Consensus 381 ~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGi 452 (593)
T KOG0344|consen 381 LVASGFKPPVLIFVQSKERAKQLFEELEIY--------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGI 452 (593)
T ss_pred HHhccCCCCeEEEEecHHHHHHHHHHhhhc--------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccc
Confidence 444556678999999999999999888522 488999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 350 dip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+-+|+.||++++ |.|..+|+||+||+||. +.|++|.+|++++..
T Consensus 453 Df~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 453 DFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred cccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 9999999999777 88999999999999999 889999999996543
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.1e-27 Score=280.27 Aligned_cols=335 Identities=18% Similarity=0.211 Sum_probs=210.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCC---cc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KV 123 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~---~~ 123 (697)
..+....||.++......+ +++|++|||+|||.+....+.......++++++++|++.|+.|.. +.+...++. .+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~-~~~~~~~~~~~~~v 89 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHA-EFFRKFLNIPEEKI 89 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH-HHHHHHhCCCCceE
Confidence 3467788999988877776 799999999999965444443332335678999999999988754 445555554 34
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
....|.....+........+|+|+||+.+...+..+.. +.++++||+||||. .........+.+......+...+++|
T Consensus 90 ~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 90 VVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred EEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcCCCCEEEEE
Confidence 43444211111111112578999999999887766554 78999999999994 33332233344444455566789999
Q ss_pred cccc--cHHHHHHHhhcCcCCCCCcccccCC-------CCCCcEEEec--------------------------cceeee
Q 005436 203 SATI--EAKSMSAFFHARKGRRGLEGVELVP-------RLEPAILSVE--------------------------GRGFNV 247 (697)
Q Consensus 203 SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------------------~~~~~v 247 (697)
|||+ +.+.+...+...............+ ......+.++ +...+.
T Consensus 169 TaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 169 TASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred EcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9998 4444444433321100000000000 0000000000 000000
Q ss_pred E----------------EEecCCCc-------------------------------------------------------
Q 005436 248 Q----------------IHYVEEPV------------------------------------------------------- 256 (697)
Q Consensus 248 ~----------------~~~~~~~~------------------------------------------------------- 256 (697)
. ........
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~ 328 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVE 328 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHh
Confidence 0 00000000
Q ss_pred -----------------chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC-
Q 005436 257 -----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG- 318 (697)
Q Consensus 257 -----------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~- 318 (697)
...+......+..+.....++++||||+++..++.+++.|... ++.+..+||.
T Consensus 329 ~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~ 399 (773)
T PRK13766 329 DPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQA 399 (773)
T ss_pred CHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccc
Confidence 0000000111111112246788999999999999999999653 5566677765
Q ss_pred -------CCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhh
Q 005436 319 -------LSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (697)
Q Consensus 319 -------l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~ 391 (697)
|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +.+...++||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHh
Confidence 99999999999999999999999999999999999999998544 56777899999
Q ss_pred cccCCCCCcEEEEccChhHh
Q 005436 392 GRAGRVRPGKCYRLYTEEYF 411 (697)
Q Consensus 392 GRaGR~~~G~~~~l~~~~~~ 411 (697)
||+||.++|.+|.|+.+...
T Consensus 462 GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cccCcCCCCEEEEEEeCCCh
Confidence 99999999999999985543
No 75
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1.3e-28 Score=255.77 Aligned_cols=316 Identities=19% Similarity=0.234 Sum_probs=234.3
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc--ccCCCeEEEEECccHHHHH--HHHHHHHH-HhCCc
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQ--AVASRVAE-EMGVK 122 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~--~~~~~~~Ivv~p~r~l~~~--~~~~~~~~-~~~~~ 122 (697)
.+|. +.|..++.++..+-++||+|..|+|||.+...+..+.. .....+.++++|||+++.| .....++. ..|.+
T Consensus 46 ~~pt-kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 46 ALPT-KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred cCCC-chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 4554 56777888888888999999999999933222222221 1123467999999999988 33334443 45777
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhCCCceEE
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLI 200 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~-~~~~~~~ii 200 (697)
+...+|.+.-..+...-..++|+|+|||++..+...+.+ ...++++|+|||+ ...++..+..-+..+. ......+++
T Consensus 125 csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~ 203 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVA 203 (980)
T ss_pred eEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheee
Confidence 778888665544444444799999999999998877766 8999999999999 4556555544444444 466678899
Q ss_pred EecccccH---HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc---eeeeEEEecCCCcc----hHHHHHHHHHHHH
Q 005436 201 ISSATIEA---KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEEPVS----DYVQAAVSTVLLI 270 (697)
Q Consensus 201 ~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~----~~~~~~~~~~~~~ 270 (697)
.+|||.+. +.+++|+.+.. ++....+ .+.++.++...... +........+-++
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~-----------------lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~v 266 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPA-----------------LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHV 266 (980)
T ss_pred EEeccCchhHHHHHHHHhcccc-----------------eeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHH
Confidence 99999843 34556665433 3332222 23344444433322 2334455566666
Q ss_pred HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccC
Q 005436 271 HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT 350 (697)
Q Consensus 271 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvd 350 (697)
...-+-.+.||||+....++.++..|... |+.+.++.|.|++.+|..+++.+++-..+|||+|+..++|||
T Consensus 267 f~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 267 FKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 77777788999999999999999999764 899999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 351 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
-|+|++||+-+. |.+-..|.||+|||||. ..|.++.+...+
T Consensus 338 a~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 338 ADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred ccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 999999999554 77788888999999999 779988887643
No 76
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.1e-28 Score=267.80 Aligned_cols=335 Identities=19% Similarity=0.242 Sum_probs=242.3
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccc-----cCCCeEEEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-----ADGGRVIAC 100 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~-----~~~~~~Ivv 100 (697)
+|..-+.+.....-+++.... +..+.|..++.+|..++++|.+|-|||||| |.+|.+...... ..+.-.|++
T Consensus 366 sW~q~gl~~~il~tlkkl~y~-k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYE-KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCC-CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 556666666655555443333 677788899999999999999999999999 778887543322 234557999
Q ss_pred ECccHHHHH--HHHHHHHHHhCCcceeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcCC--C--CCCCcEEEEeCC
Q 005436 101 TQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDP--L--LTKYSVIMVDEA 173 (697)
Q Consensus 101 ~p~r~l~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~--~--l~~~~~iIiDE~ 173 (697)
+|+|+|+.| ...+.+.+..++.+...+|....-+... ....+.|+|||||.....+..+. . +.++.++|+||+
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea 524 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA 524 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh
Confidence 999999998 5566677778888888877443322221 12258999999999998775433 2 667779999999
Q ss_pred CcCCcChhHHHHHHHHHHHhCCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---eeE
Q 005436 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQ 248 (697)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 248 (697)
+ |..+..|.....+.+...+++.|.+++|||.+.. .++.-....|+ -+.+.++.. .++
T Consensus 525 D-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv----------------eiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 525 D-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV----------------EIIVGGRSVVCKEVT 587 (997)
T ss_pred h-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe----------------eEEEccceeEeccce
Confidence 9 7777766666666666678999999999999554 33332222321 122223221 222
Q ss_pred EEecCCC-cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 249 IHYVEEP-VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 249 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
..+.... ....+.....+ +......+++||||...+.+..+.+.|.+. ++....+||+.++.+|..+
T Consensus 588 q~v~V~~~e~eKf~kL~eL---l~e~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~st 655 (997)
T KOG0334|consen 588 QVVRVCAIENEKFLKLLEL---LGERYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSST 655 (997)
T ss_pred EEEEEecCchHHHHHHHHH---HHHHhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhH
Confidence 2222222 12222222222 223334889999999999999999999865 7888889999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEcc
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~ 406 (697)
++.|++|..+++|||+++++|+|++++.+||++.+ +.. ...|.||.||+||+ +.|.||.+.
T Consensus 656 i~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~--------pnh----------~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 656 IEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF--------PNH----------YEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred HHHHhccCceEEEehhhhhcccccccceEEEEccc--------chh----------HHHHHHHhcccccCCccceeEEEe
Confidence 99999999999999999999999999999999554 443 34477999999999 789999999
Q ss_pred ChhH
Q 005436 407 TEEY 410 (697)
Q Consensus 407 ~~~~ 410 (697)
++++
T Consensus 718 ~p~q 721 (997)
T KOG0334|consen 718 TPDQ 721 (997)
T ss_pred ChHH
Confidence 9843
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=9.8e-28 Score=259.07 Aligned_cols=323 Identities=18% Similarity=0.179 Sum_probs=226.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
.+-+..+|++++.++..+..|+|.|+|.+|||.++. +....+...+.+.||-+|-++|..|.+..+ ...+| .+|..+
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAE-YAialaq~h~TR~iYTSPIKALSNQKfRDF-k~tF~-DvgLlT 371 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAE-YAIALAQKHMTRTIYTSPIKALSNQKFRDF-KETFG-DVGLLT 371 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHH-HHHHHHHhhccceEecchhhhhccchHHHH-HHhcc-ccceee
Confidence 345889999999999999999999999999995444 333333446678999999999999887663 34443 345666
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC-----cCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
|. ....+ .+.+++||+++|..++.++.. ++++.+||+||+| ||+.- +-..+....+.+++|+
T Consensus 372 GD-----vqinP-eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvV------WEEViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 372 GD-----VQINP-EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVV------WEEVIIMLPRHVNFIL 439 (1248)
T ss_pred cc-----eeeCC-CcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccc------ceeeeeeccccceEEE
Confidence 62 33345 789999999999999877665 8999999999999 44421 1112334567899999
Q ss_pred ecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC-c-----------------------
Q 005436 202 SSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP-V----------------------- 256 (697)
Q Consensus 202 ~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~----------------------- 256 (697)
+|||+ |...|++|.+....+.. .+++...|+.|.+.+..-.. .
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~I------------yViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTI------------YVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceE------------EEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 99999 99999999987653321 24444444444443321110 0
Q ss_pred ------------------------------c---------hHH--HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHH
Q 005436 257 ------------------------------S---------DYV--QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQL 295 (697)
Q Consensus 257 ------------------------------~---------~~~--~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~ 295 (697)
. +.. ......+..+.. ..--+++|||-+++.|++.++.
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHHHH
Confidence 0 000 012222222222 2345799999999999999998
Q ss_pred HHHHhhh---------------------ccCCCCC---------eEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcc
Q 005436 296 LTEEART---------------------SKKNSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (697)
Q Consensus 296 L~~~~~~---------------------~~~~~~~---------~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~ 345 (697)
|...--. ...+.|. -.++.||||+-+--++-|+..|..|-+|||+||.++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8653110 0111111 148899999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccCh
Q 005436 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTE 408 (697)
Q Consensus 346 e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~ 408 (697)
++|||.|.-.+|+++=. .+|.... ......+|.||+|||||. ..|.++.+...
T Consensus 667 AMGVNMPARtvVF~Sl~----KhDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLR----KHDGNEF------RELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred hhhcCCCceeEEeeehh----hccCcce------eecCChhHHhhhccccccccCcCceEEEEecC
Confidence 99999998888886422 2343322 256789999999999998 67888877654
No 78
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=9.8e-27 Score=261.93 Aligned_cols=331 Identities=19% Similarity=0.170 Sum_probs=231.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCC--cce
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV--KVG 124 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~--~~~ 124 (697)
..+.+..+|++.+.++..++.|+|+||||||||.+..-++ ......+.+++|.+|.++|..|.+.+..++.-.. .+|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi-~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAI-ALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHH-HHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 5667999999999999999999999999999994444333 3334466779999999999999887766554422 245
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+|. -..++ .+.++|+|.++|.+.+..+ ..+..+..||+||+|. .-+.+-....-.-++.....+++|+||
T Consensus 195 L~TGD-----v~IN~-~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eRG~VWEE~Ii~lP~~v~~v~LS 267 (1041)
T COG4581 195 LMTGD-----VSINP-DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRERGVVWEEVIILLPDHVRFVFLS 267 (1041)
T ss_pred ceecc-----eeeCC-CCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccccccchhHHHHHHhcCCCCcEEEEe
Confidence 55552 22334 7889999999999988776 4599999999999992 212111111122234456678999999
Q ss_pred ccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC--------cchHHHHH----H------
Q 005436 204 ATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------VSDYVQAA----V------ 264 (697)
Q Consensus 204 AT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~----~------ 264 (697)
||+ |+..|+.|++.... .+..++..+.|+.|.+.++.... ..+..... .
T Consensus 268 ATv~N~~EF~~Wi~~~~~------------~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 268 ATVPNAEEFAEWIQRVHS------------QPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCCCCHHHHHHHHHhccC------------CCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999 99999999985542 12336666777777666554431 01000000 0
Q ss_pred --------------------------------HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH-------------
Q 005436 265 --------------------------------STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE------------- 299 (697)
Q Consensus 265 --------------------------------~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~------------- 299 (697)
..+.........-++++|+-++..|+..+..+...
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 01111222233457999999999998888776521
Q ss_pred ------hhhccCCCCCe-------------EEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEec
Q 005436 300 ------ARTSKKNSSGL-------------IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDS 360 (697)
Q Consensus 300 ------~~~~~~~~~~~-------------~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~ 360 (697)
...+..+..++ .++.||++|-+..+..+.+.|..|.+||++||.+++.|+|+|.-++|+ +
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~ 494 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-T 494 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-e
Confidence 11111111111 267899999999999999999999999999999999999999655554 5
Q ss_pred CcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccC
Q 005436 361 GFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYT 407 (697)
Q Consensus 361 g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~ 407 (697)
++.| +|... ..+.+..+|.|+.|||||. ..|.++.+..
T Consensus 495 ~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 495 SLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEecC
Confidence 5543 55332 2289999999999999998 6799888854
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=3.4e-26 Score=269.67 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=177.9
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhccccCCCeEEEEECccHHHHHHHHH--HHHHHhCCcce
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVG 124 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~-lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~~~~ 124 (697)
....+++|...+..+..+++++++||||||||+. ++...... ..+.++++++|+|+|+.|.... .+....+..+.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 4577899999999999999999999999999943 33322222 2467899999999999985433 34444455544
Q ss_pred eEEeeEee----cCC---cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc---Ch-------hH----H
Q 005436 125 EEVGYTIR----FED---FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---ST-------DI----L 183 (697)
Q Consensus 125 ~~~g~~~~----~~~---~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~---~~-------d~----l 183 (697)
...|.... .+. ....+..+|+|+||+.|.+.+. .....++++|||||||...- +. .| +
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH
Confidence 44443210 000 0112258999999999998765 22255699999999993221 11 11 1
Q ss_pred HHHHHHHH-------------Hh--------CCCceEEEecccccHHHHH-HHhhcCcCCCCCcccccCCCCCCcEEEec
Q 005436 184 LGLLKKIQ-------------RC--------RSDLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVE 241 (697)
Q Consensus 184 ~~~l~~~~-------------~~--------~~~~~ii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (697)
..++..+. .. ..+.+++++|||++..... .+|.... .+.+.
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-----------------~~~v~ 297 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-----------------GFEVG 297 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-----------------eEEec
Confidence 11111110 00 1157899999999654332 2232211 11111
Q ss_pred cc---eeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH---HHHHHHHHHHHhhhccCCCCCeEEEEe
Q 005436 242 GR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLIILPL 315 (697)
Q Consensus 242 ~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (697)
.. ..++...|.... +... .+..+... .+.++||||+++.. ++.+++.|... ++.+..+
T Consensus 298 ~~~~~~rnI~~~yi~~~--~k~~----~L~~ll~~-l~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~ 361 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE--DSVE----KLVELVKR-LGDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELA 361 (1176)
T ss_pred CcccccCCceEEEEEcc--cHHH----HHHHHHHh-cCCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEE
Confidence 11 122333443322 2122 22222222 23579999999776 99999999775 8999999
Q ss_pred cCCCCHHHHhhccCCCCCCCcEEEEe----cCccccccCCCC-eEEEEecCccc
Q 005436 316 YSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (697)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~kilva----T~i~e~Gvdip~-v~~VId~g~~k 364 (697)
||+| + +.++.|++|+.+|||| |+++++|||+|+ |++||++|.++
T Consensus 362 hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 362 ISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred eCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 2 2359999999999999 699999999999 89999999988
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=4.9e-27 Score=233.37 Aligned_cols=307 Identities=18% Similarity=0.198 Sum_probs=206.7
Q ss_pred HHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe-e--Ee
Q 005436 57 AILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-Y--TI 131 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g-~--~~ 131 (697)
.+.-.+..+++|.|+.|||+||| +|+|.++.. +..|+++|..+|...++.... .+.+++..... . ..
T Consensus 28 A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------gITIV~SPLiALIkDQiDHL~--~LKVp~~SLNSKlSt~E 99 (641)
T KOG0352|consen 28 AINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------GITIVISPLIALIKDQIDHLK--RLKVPCESLNSKLSTVE 99 (641)
T ss_pred HHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------CeEEEehHHHHHHHHHHHHHH--hcCCchhHhcchhhHHH
Confidence 44455677899999999999999 899977643 357999999999888776632 22222221111 0 00
Q ss_pred e----cC-CcCCCCCceEEEechHHHHHHH----hcC-CCCCCCcEEEEeCCCcCCc-ChhHHHHHHHH--HHHhCCCce
Q 005436 132 R----FE-DFTNKDLTAIKFLTDGVLLREM----MDD-PLLTKYSVIMVDEAHERSI-STDILLGLLKK--IQRCRSDLR 198 (697)
Q Consensus 132 ~----~~-~~~~~~~~~I~v~T~~~Ll~~l----~~~-~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~--~~~~~~~~~ 198 (697)
| .+ ....+ +.+++|.||+...... .+. ..-..++++|+||||..+. ..||...+++. ++...+++.
T Consensus 100 R~ri~~DL~~ekp-~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vp 178 (641)
T KOG0352|consen 100 RSRIMGDLAKEKP-TIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVP 178 (641)
T ss_pred HHHHHHHHHhcCC-ceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCc
Confidence 0 01 11223 6889999998643221 111 1134578999999997663 33554444433 555678999
Q ss_pred EEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHH-------
Q 005436 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH------- 271 (697)
Q Consensus 199 ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------- 271 (697)
.|.++||.+.+.-.+.+....... +..++..+ .|.-..+|.... .+.+..-...+.+..
T Consensus 179 wvALTATA~~~VqEDi~~qL~L~~-----------PVAiFkTP--~FR~NLFYD~~~-K~~I~D~~~~LaDF~~~~LG~~ 244 (641)
T KOG0352|consen 179 WVALTATANAKVQEDIAFQLKLRN-----------PVAIFKTP--TFRDNLFYDNHM-KSFITDCLTVLADFSSSNLGKH 244 (641)
T ss_pred eEEeecccChhHHHHHHHHHhhcC-----------cHHhccCc--chhhhhhHHHHH-HHHhhhHhHhHHHHHHHhcCCh
Confidence 999999997776555554322110 01122222 222233332111 111111111111111
Q ss_pred ------hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcc
Q 005436 272 ------DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (697)
Q Consensus 272 ------~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~ 345 (697)
.....|-.||||.|++++|+++-.|... ++....+|+||...||.+|-+.+.+|+..||+||+.+
T Consensus 245 ~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SF 315 (641)
T KOG0352|consen 245 EKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSF 315 (641)
T ss_pred hhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecc
Confidence 1122477899999999999999988765 8999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 346 e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
++|||-|+|++||+... +.+.+-|.|-.|||||. .+..|-..|++++.+.
T Consensus 316 GMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999999999999555 67788899999999999 7888988888877655
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.2e-25 Score=249.02 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=186.5
Q ss_pred CCcHHHHHHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 49 LPVYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
..+++||++.++.+..+ +..+|+.|||+|||.+...++... +.++||++|+..++.| +.+.+.+........
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~Q-W~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQ-WKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHH-HHHHHHHhcCCCCce
Confidence 44789999999988743 368999999999995554444332 3467888888777665 444455554433222
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-------CC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCC
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-------PL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-------~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~ 196 (697)
...+.......... ...|+|+|++++....... .. -..+++||+||||. .. ... .+.+......
T Consensus 329 I~~~tg~~k~~~~~-~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~~----fr~il~~l~a 401 (732)
T TIGR00603 329 ICRFTSDAKERFHG-EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AAM----FRRVLTIVQA 401 (732)
T ss_pred EEEEecCccccccc-CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HHH----HHHHHHhcCc
Confidence 21121111111112 4789999999875322111 11 24689999999993 32 222 2222222233
Q ss_pred ceEEEeccccc--HH---HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeE--EEecCCCcc---hHH------
Q 005436 197 LRLIISSATIE--AK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--IHYVEEPVS---DYV------ 260 (697)
Q Consensus 197 ~~ii~~SAT~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~---~~~------ 260 (697)
...+++|||+. .+ .+..+++.......+...... |..-+++ ..+.+.... +|+
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~-----------G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKK-----------GFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhC-----------CccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 45799999992 11 233334432211111111000 1000110 011111100 110
Q ss_pred -----------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccC
Q 005436 261 -----------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (697)
Q Consensus 261 -----------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~ 329 (697)
-..+..++..+. ..+.++||||.+...++.+++.| + +..+||+++..+|.++++
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~il~ 535 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQILQ 535 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHHHHH
Confidence 011111223332 35678999999998888877765 2 345899999999999999
Q ss_pred CCCCC-CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCc-EE-----
Q 005436 330 PTPRG-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-KC----- 402 (697)
Q Consensus 330 ~f~~g-~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G-~~----- 402 (697)
.|++| .+++||+|+++.+|+|+|++++||.... . +-|..+|+||+||++|.++| .+
T Consensus 536 ~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~--------~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 536 NFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS--------H---------YGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred HHHhCCCccEEEEecccccccCCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccccCCCCCccccccc
Confidence 99865 7899999999999999999999997332 1 24889999999999999543 33
Q ss_pred --EEccChhHhhh
Q 005436 403 --YRLYTEEYFVK 413 (697)
Q Consensus 403 --~~l~~~~~~~~ 413 (697)
|.|+++++.+.
T Consensus 599 ~fY~lVs~dT~E~ 611 (732)
T TIGR00603 599 FFYSLVSKDTQEM 611 (732)
T ss_pred eEEEEecCCchHH
Confidence 88888665443
No 82
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=230.14 Aligned_cols=337 Identities=21% Similarity=0.240 Sum_probs=237.6
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccc-cCCCeEEEEECc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-ADGGRVIACTQP 103 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~-~~~~~~Ivv~p~ 103 (697)
.+|.+.-++...++++.+.--.-|.- +|..-+..+.++++++-.|-|||||| +++|.+...... ..+.+.++++|+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptp-iqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTP-IQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCc-hhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 35666666777777787776666654 45556777888999999999999999 888877553322 234578999999
Q ss_pred cHHHHH--HHHHHHHHHhCCcceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 104 RRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 104 r~l~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
|+|+.| .+.+.+++..+.+....+|+....+.. .-..+++|+++||+.++.....-.+ |+.+.+||+||++ |...
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfe 178 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFE 178 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHh
Confidence 999998 445556665666666566643322222 1122799999999999876544333 8999999999999 7777
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEE--ecccee-eeEEEecCCCc
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILS--VEGRGF-NVQIHYVEEPV 256 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~v~~~~~~~~~ 256 (697)
..|...+-+.+.+...+.+.++||||++.. +.++-..... ++..+. ++.+.. ..+..+.....
T Consensus 179 mgfqeql~e~l~rl~~~~QTllfSatlp~~-lv~fakaGl~-------------~p~lVRldvetkise~lk~~f~~~~~ 244 (529)
T KOG0337|consen 179 MGFQEQLHEILSRLPESRQTLLFSATLPRD-LVDFAKAGLV-------------PPVLVRLDVETKISELLKVRFFRVRK 244 (529)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEeccCchh-hHHHHHccCC-------------CCceEEeehhhhcchhhhhheeeecc
Confidence 767777766677777788999999999655 2233222111 011221 222211 12222222222
Q ss_pred chHHHHHHHHHHHHH-hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC
Q 005436 257 SDYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (697)
.+ ....++.+. ....+.+++||+++..+++-+...|... ++....++|.|+++.|..-+..|..++
T Consensus 245 a~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k 311 (529)
T KOG0337|consen 245 AE----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRK 311 (529)
T ss_pred HH----HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCCc
Confidence 22 112222222 2223457999999999999999988776 788888999999999999999999999
Q ss_pred cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 336 ~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
..++|.|+++++|+|||..+-||++++ |.+..-|.||.||+.|. +.|.+|.++..++
T Consensus 312 ~~~lvvTdvaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 312 TSILVVTDVAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred cceEEEehhhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEeccc
Confidence 999999999999999999999999665 44455555999999998 6899999987654
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=4.9e-26 Score=258.26 Aligned_cols=313 Identities=18% Similarity=0.178 Sum_probs=223.5
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
-...|.+++.+...|++++|..|||+||| ||+|.++.. +-.|||.|...|...++... ...++......+
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~------gitvVISPL~SLm~DQv~~L--~~~~I~a~~L~s 336 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG------GVTVVISPLISLMQDQVTHL--SKKGIPACFLSS 336 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC------CceEEeccHHHHHHHHHHhh--hhcCcceeeccc
Confidence 44667888889999999999999999999 999977653 35799999999999888774 344555444444
Q ss_pred eEeecCC-----cCCCC--CceEEEechHHHHHHHhc---CCCCCC---CcEEEEeCCCcCCcCh-hHHHHH--HHHHHH
Q 005436 129 YTIRFED-----FTNKD--LTAIKFLTDGVLLREMMD---DPLLTK---YSVIMVDEAHERSIST-DILLGL--LKKIQR 192 (697)
Q Consensus 129 ~~~~~~~-----~~~~~--~~~I~v~T~~~Ll~~l~~---~~~l~~---~~~iIiDE~Her~~~~-d~l~~~--l~~~~~ 192 (697)
.+..-+. ....+ ..+|+|.||+.+...-.- ...+.. +.++||||||+.+-+. ||...+ +..++.
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~ 416 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI 416 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh
Confidence 3322110 11111 679999999988643211 111333 8899999999766333 443332 233444
Q ss_pred hCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHh
Q 005436 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (697)
Q Consensus 193 ~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (697)
..+.+.+|.+|||.....-.+.......... .++..... +-..+|.-....+ .............
T Consensus 417 ~~~~vP~iALTATAT~~v~~DIi~~L~l~~~------------~~~~~sfn--R~NL~yeV~~k~~-~~~~~~~~~~~~~ 481 (941)
T KOG0351|consen 417 RFPGVPFIALTATATERVREDVIRSLGLRNP------------ELFKSSFN--RPNLKYEVSPKTD-KDALLDILEESKL 481 (941)
T ss_pred hCCCCCeEEeehhccHHHHHHHHHHhCCCCc------------ceecccCC--CCCceEEEEeccC-ccchHHHHHHhhh
Confidence 6677899999999966555555543321111 01111111 1111111111110 1122333334444
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC
Q 005436 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (697)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip 352 (697)
..+.+.+||||.++.+++.++..|... ++....||+||++.+|..|-..|-.++++|||||=++++|||.|
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 567788999999999999999999887 68899999999999999999999999999999999999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
+|+.||++++ |-|...|.|-+|||||. .+..|..+|+..++..
T Consensus 553 DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 553 DVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 9999999999 88999999999999999 7899999999887765
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=2e-24 Score=239.33 Aligned_cols=327 Identities=20% Similarity=0.293 Sum_probs=195.5
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCC
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~ 121 (697)
++.|-++.++-+++.++.-++..|+.++||+||| +.+|.++.. . .+..+++++|++.|+.+ +....+.+.+|.
T Consensus 64 ~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~a--L-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNA--L-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHh--h-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 4556667777777777766666899999999999 555644332 2 34568999999999988 344557778888
Q ss_pred cceeEEeeEe--ecC---CcCCCCCceEEEechHHH-HHHHhc-------CCCCCCCcEEEEeCCCcCCcC---------
Q 005436 122 KVGEEVGYTI--RFE---DFTNKDLTAIKFLTDGVL-LREMMD-------DPLLTKYSVIMVDEAHERSIS--------- 179 (697)
Q Consensus 122 ~~~~~~g~~~--~~~---~~~~~~~~~I~v~T~~~L-l~~l~~-------~~~l~~~~~iIiDE~Her~~~--------- 179 (697)
.++..++... ... ..... .++|+|+||+.| ...+.. ...+..+.++||||||....+
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 8876554211 111 11123 689999999999 343321 123788999999999932111
Q ss_pred ------hhHHHHHHHHH-HHhCC--------CceEEEecccccHHHHHHHhhcCc-------------------------
Q 005436 180 ------TDILLGLLKKI-QRCRS--------DLRLIISSATIEAKSMSAFFHARK------------------------- 219 (697)
Q Consensus 180 ------~d~l~~~l~~~-~~~~~--------~~~ii~~SAT~~~~~~~~~~~~~~------------------------- 219 (697)
+. +......+ ..... +-+-+.++-. ..+...++|+...
T Consensus 220 g~~~~~~~-~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~-G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 220 GAPRVQSN-LYHIADTFVRTLKEDVDYIFKKDKKEVWLTDK-GIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred CCCccchH-HHHHHHHHHHhcCCCCCeEEEcCCCeeeecHh-HHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 11 11111111 11111 1122333221 0111112211000
Q ss_pred -CC---------------------CCCcc-----------cccC------------------------------------
Q 005436 220 -GR---------------------RGLEG-----------VELV------------------------------------ 230 (697)
Q Consensus 220 -~~---------------------~~~~~-----------~~~~------------------------------------ 230 (697)
.. ..|.. ++..
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 00 00000 0000
Q ss_pred CCCCCcEEEeccceeeeEEEecCC---CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCC
Q 005436 231 PRLEPAILSVEGRGFNVQIHYVEE---PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS 307 (697)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~ 307 (697)
......++.+|.........+.+. ...+.....+..+...+ ..+.++||||++++.++.+++.|.+.
T Consensus 378 ~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-------- 447 (762)
T TIGR03714 378 ETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-------- 447 (762)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC--------
Confidence 000111233333221111111000 01122233333333333 35678999999999999999999775
Q ss_pred CCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC---------CeEEEEecCcccceeecCCCCccccc
Q 005436 308 SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE---------GIVYVVDSGFSKQRFYNPISDIENLV 378 (697)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip---------~v~~VId~g~~k~~~yd~~~~~~~l~ 378 (697)
++....+||.+...++..+..+++.| +|+||||++++|+||| ++.+|+.+..
T Consensus 448 -gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~---------------- 508 (762)
T TIGR03714 448 -GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM---------------- 508 (762)
T ss_pred -CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC----------------
Confidence 78889999999999998888888776 7999999999999999 9999998443
Q ss_pred ccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 379 VAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 379 ~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
|..... .||+||+||. .+|.++.+++.++
T Consensus 509 --ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 509 --ENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred --CCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 333334 7999999999 8999999998644
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=6.9e-25 Score=248.62 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHHHhc---CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce
Q 005436 48 RLPVYKYRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~---~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~ 124 (697)
...++..|+++++.+.+ ++++++.|+||||||......+... ...+.++++++|+++|+.|. .+++.+.++..+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~-~~~l~~~fg~~v~ 219 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQM-LARFRARFGAPVA 219 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH-HHHHHHHhCCCEE
Confidence 34578899999999987 4789999999999994443333322 23467899999999998865 4456667787777
Q ss_pred eEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHH----HHHHHHHHHhCC
Q 005436 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL----LGLLKKIQRCRS 195 (697)
Q Consensus 125 ~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l----~~~l~~~~~~~~ 195 (697)
..+|.....+. ....+..+|+|+|++.+.. .+.++++|||||+|+.+...+-. ..-+........
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 77664322111 1112257999999987641 26789999999999654332110 011112233456
Q ss_pred CceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce----e-eeEEEecCCC----c-chHHHHHHH
Q 005436 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG----F-NVQIHYVEEP----V-SDYVQAAVS 265 (697)
Q Consensus 196 ~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~v~~~~~~~~----~-~~~~~~~~~ 265 (697)
+.++|++|||+..+.+.....+... .+....+. . .+++...... . .........
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~----------------~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYR----------------LLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhcccee----------------EEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHH
Confidence 7899999999988877664322110 22222211 1 1111111100 0 001112222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHH----------------------------------------------------------
Q 005436 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (697)
.+.+.. ..++++|||+|.++
T Consensus 358 ~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 358 AIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 222222 24567888887643
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC--HHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcc
Q 005436 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLS--RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (697)
Q Consensus 288 --~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~--~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~ 363 (697)
.++++++.|.+.+ ++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|++|+..+
T Consensus 436 g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~-- 506 (679)
T PRK05580 436 GPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD-- 506 (679)
T ss_pred eccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--
Confidence 3456666665553 4778999999987 46788999999999999999999999999999999985311
Q ss_pred cceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEE
Q 005436 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (697)
Q Consensus 364 k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~ 404 (697)
.|.......+....-....+.|++|||||. .+|.++.
T Consensus 507 ----aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 507 ----ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred ----CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 222223333333334467889999999997 7898884
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=3.5e-25 Score=236.73 Aligned_cols=314 Identities=15% Similarity=0.162 Sum_probs=218.2
Q ss_pred hHHHHhcCCC--cHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHH
Q 005436 41 SIEKQRQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA 112 (697)
Q Consensus 41 ~~~~~r~~lP--i~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~ 112 (697)
.+.+....|| +...|+.++.-|..+ -+=+++|.-|||||..+...++. ....|.++.+.+||--||.|-+.
T Consensus 251 l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 251 LLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYE 329 (677)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHH
Confidence 3555556676 778888777777543 24589999999999544444433 34467788889999888877443
Q ss_pred H--HHHHHhCCcceeEEeeEeecC------CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHH
Q 005436 113 S--RVAEEMGVKVGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL 184 (697)
Q Consensus 113 ~--~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~ 184 (697)
. .+...+|++++..+|...... ...+. ..+|+|+|..-+ +.+-.+.++.+||+||=|..++.
T Consensus 330 ~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~----- 399 (677)
T COG1200 330 SLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVH----- 399 (677)
T ss_pred HHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcchhh----hcceeecceeEEEEeccccccHH-----
Confidence 3 344566788888888433221 22233 799999998633 33344899999999999943332
Q ss_pred HHHHHHHHhCC-CceEEEecccccHHHHH-HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHH
Q 005436 185 GLLKKIQRCRS-DLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA 262 (697)
Q Consensus 185 ~~l~~~~~~~~-~~~ii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 262 (697)
--..+..... .+.++.||||+=+..++ ..|++..... +-..|....|+..........+.
T Consensus 400 -QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~--------------IdElP~GRkpI~T~~i~~~~~~~--- 461 (677)
T COG1200 400 -QRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSI--------------IDELPPGRKPITTVVIPHERRPE--- 461 (677)
T ss_pred -HHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchh--------------hccCCCCCCceEEEEeccccHHH---
Confidence 2223344455 57899999999555555 4555543210 22344444677777776544332
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCHHHHH--------HHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 263 AVSTVLLIHDKEPPGDILVFLTGQDDID--------ATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 263 ~~~~~~~~~~~~~~~~iLVF~~~~~~~~--------~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
....+.... ..+.++.|.||-.++.+ .+++.|... .++..+..+||.|+.+|+++|++.|++|
T Consensus 462 v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~ 532 (677)
T COG1200 462 VYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEG 532 (677)
T ss_pred HHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcC
Confidence 233333322 25788999999777655 444444433 3588899999999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCC-CcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPIS-DIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~-~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
+.+|||||.+.|.|||+|+.++.|. +|+.+ |+.+|. |-.||+||. .++.|+.+|.+..
T Consensus 533 e~~ILVaTTVIEVGVdVPnATvMVI--------e~AERFGLaQLH----------QLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 533 EIDILVATTVIEVGVDVPNATVMVI--------ENAERFGLAQLH----------QLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CCcEEEEeeEEEecccCCCCeEEEE--------echhhhhHHHHH----------HhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999775 45443 555555 999999999 8899999998543
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3e-25 Score=242.74 Aligned_cols=301 Identities=19% Similarity=0.172 Sum_probs=188.3
Q ss_pred EEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCC-----cCCCCCce
Q 005436 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTA 143 (697)
Q Consensus 69 ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~ 143 (697)
++.||||||||.....++... ...++++++++|+++|+.|. .+++.+.++..+...+|.....+. ....+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~-~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQM-IQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH-HHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 478999999995543333322 33567899999999998765 456666777776666553211110 11122678
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHH----HHHHHHHHhCCCceEEEecccccHHHHHHHhhcCc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL----GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~----~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~ 219 (697)
|+|+|+..+.. .+.++++|||||+|+-+...+-.. .-+...+....+.++|++|||+..+.+.....+..
T Consensus 79 IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~ 152 (505)
T TIGR00595 79 VVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAY 152 (505)
T ss_pred EEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCe
Confidence 99999987642 267899999999996553322110 01122233446889999999998887766543221
Q ss_pred CCCCCcccccCCCCCCcEEEecc----cee-eeEEEecCCCc--chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH----
Q 005436 220 GRRGLEGVELVPRLEPAILSVEG----RGF-NVQIHYVEEPV--SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---- 288 (697)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---- 288 (697)
. .+..+. ... .+++....... ..........+.+.. ..++++|||+|++..
T Consensus 153 ~----------------~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 153 R----------------LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred E----------------EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCee
Confidence 0 111111 111 11111111111 111122333333332 246789999887653
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhhccCCCCCeEE
Q 005436 289 --------------------------------------------------------IDATIQLLTEEARTSKKNSSGLII 312 (697)
Q Consensus 289 --------------------------------------------------------~~~l~~~L~~~~~~~~~~~~~~~v 312 (697)
++++.+.|.+.+ ++..+
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v 287 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARI 287 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcE
Confidence 466777776654 47889
Q ss_pred EEecCCCCHHHH--hhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHh
Q 005436 313 LPLYSGLSRAEQ--EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (697)
Q Consensus 313 ~~lh~~l~~~~r--~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr 390 (697)
..+|++++..++ +++++.|++|+.+|||+|++++.|+|+|+|++|+-.+ +|.......+....-....+.|+
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~ 361 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQV 361 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHH
Confidence 999999987665 8899999999999999999999999999999885211 23222333333333456788899
Q ss_pred hcccCCC-CCcEEEE-ccCh
Q 005436 391 AGRAGRV-RPGKCYR-LYTE 408 (697)
Q Consensus 391 ~GRaGR~-~~G~~~~-l~~~ 408 (697)
+|||||. .+|.++. .+.+
T Consensus 362 ~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 362 AGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HhccCCCCCCCEEEEEeCCC
Confidence 9999997 7898873 3443
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.6e-24 Score=207.47 Aligned_cols=292 Identities=19% Similarity=0.235 Sum_probs=195.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC-CcceeEEeeEeecC
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFE 134 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 134 (697)
+.+++.+.+.+..+|.|-||+|||-.+.+.+... ...|+ .|.++-||-=.+.+++.|+...+. +.+....|.+.
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~-~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~--- 181 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGG-RVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSD--- 181 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCC-eEEEecCcccchHHHHHHHHHhhccCCeeeEecCCc---
Confidence 4567778889999999999999996665555433 33455 466777777777788888887765 77777766322
Q ss_pred CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHH-HHHHHHHhCCCceEEEecccccHHHHHH
Q 005436 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG-LLKKIQRCRSDLRLIISSATIEAKSMSA 213 (697)
Q Consensus 135 ~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~-~l~~~~~~~~~~~ii~~SAT~~~~~~~~ 213 (697)
... .+.++|+|...|++. -+.++++||||++..-...|-.+. .++... ..+-..|.||||+..+.-.+
T Consensus 182 --~~f-r~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ar--k~~g~~IylTATp~k~l~r~ 250 (441)
T COG4098 182 --SYF-RAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKAR--KKEGATIYLTATPTKKLERK 250 (441)
T ss_pred --hhc-cccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHhh--cccCceEEEecCChHHHHHH
Confidence 222 478999999999986 356899999999965544444333 333332 33455899999986554444
Q ss_pred HhhcCcCCCCCcccccCCCCCCcEEEecccee----eeE-EEecCCCcchH----HHHHHHHHHHHHhcCCCCcEEEEcC
Q 005436 214 FFHARKGRRGLEGVELVPRLEPAILSVEGRGF----NVQ-IHYVEEPVSDY----VQAAVSTVLLIHDKEPPGDILVFLT 284 (697)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~iLVF~~ 284 (697)
...+.. ..+.++.|.+ |+. ..|...-.... +...+...+.-+. ..+.++|||+|
T Consensus 251 ~~~g~~----------------~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p 313 (441)
T COG4098 251 ILKGNL----------------RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFP 313 (441)
T ss_pred hhhCCe----------------eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEec
Confidence 433221 0344444432 221 12221111111 1112222222222 34678999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCccc
Q 005436 285 GQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (697)
Q Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k 364 (697)
+.+..++++..|++.+ +...+...|+. ...|.+.++.|++|+.++|++|.++|+|+++|+|+++|-
T Consensus 314 ~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl----- 379 (441)
T COG4098 314 EIETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL----- 379 (441)
T ss_pred chHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-----
Confidence 9999999999997764 46677888887 356788889999999999999999999999999998773
Q ss_pred ceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEc
Q 005436 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRL 405 (697)
Q Consensus 365 ~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l 405 (697)
+.... -.+.+..+|.+||+||. ..|.++.+
T Consensus 380 ----gaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 380 ----GAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ----cCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 22222 35788999999999998 34654444
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3e-24 Score=235.32 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC---
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--- 352 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip--- 352 (697)
+.++||||++++.++.+++.|.+. ++.+..+||.++..++..+...+. ..+|+||||++++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~ 541 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEP 541 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCcc
Confidence 567999999999999999999875 889999999987666665555544 456999999999999999
Q ss_pred CeE-----EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 353 GIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 353 ~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
+|. +||++++ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 542 ~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 542 GVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 9999777 88889999999999999 8999999999654
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.6e-24 Score=242.60 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=96.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCC---
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL--- 351 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdi--- 351 (697)
.+.++||||++++.++.+++.|.+. ++.+..+||.+...++..+...+..| +|+||||++++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 4778999999999999999999875 78899999999999988888887766 799999999999999
Q ss_pred CCeE-----EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 352 EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 352 p~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
|+|. +||++++ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 496 ~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 496 EGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7998 9999777 88899999999999999 7999999998544
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=4.7e-24 Score=230.70 Aligned_cols=308 Identities=16% Similarity=0.158 Sum_probs=194.9
Q ss_pred HhcCCCcHHHHHHHHHHHhc----CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 45 QRQRLPVYKYRTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 45 ~r~~lPi~~~q~~i~~~l~~----~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
......++++|+++++++.+ ++..++++|||+|||.+...++.... ..+++++|++.|+.|.. +++....+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~-~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWA-EALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHH-HHHHHhcC
Confidence 34556699999999999988 89999999999999977777766552 23899999999998766 66666665
Q ss_pred Cc--ceeEEeeEeecCCcCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCc
Q 005436 121 VK--VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (697)
Q Consensus 121 ~~--~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (697)
.. +|...|..... . ...|+|+|.+.+.+.- ........+++||+||||+... +....+... ....
T Consensus 106 ~~~~~g~~~~~~~~~-----~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a--~~~~~~~~~----~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEKEL-----E-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA--PSYRRILEL----LSAA 173 (442)
T ss_pred CccccceecCceecc-----C-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc--HHHHHHHHh----hhcc
Confidence 53 34333322211 1 1469999999998862 2222344799999999995332 222223332 2233
Q ss_pred e-EEEecccc---cHHHHHHHhhcCc-CCCCCcccccCC--CC-CCcEEEeccc-eeeeEEEecCCCcchH---------
Q 005436 198 R-LIISSATI---EAKSMSAFFHARK-GRRGLEGVELVP--RL-EPAILSVEGR-GFNVQIHYVEEPVSDY--------- 259 (697)
Q Consensus 198 ~-ii~~SAT~---~~~~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~--------- 259 (697)
. ++++|||+ |......++.-.. ........+... .. +..+..+... .......|........
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 3 89999997 3222333332221 111111000000 00 0001111110 0000000000000000
Q ss_pred ------------HHHHHHHHHHHHhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 005436 260 ------------VQAAVSTVLLIHDKE-PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 260 ------------~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (697)
.......+..+.... .+.+++||+.+..++..++..+... +. +..+.|..+..+|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~ 323 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREA 323 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHH
Confidence 000111111111211 4678999999999999999888542 44 888999999999999
Q ss_pred ccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC
Q 005436 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~ 397 (697)
+++.|+.|.+++||++.++.+|+|+|+++++|...- .-|...|.||+||.-|.
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999996333 67899999999999996
No 92
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=2.2e-24 Score=259.54 Aligned_cols=316 Identities=17% Similarity=0.109 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhccccCCCeEEEEECccHHHHHHHHH--HHHHHhCC--c
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGV--K 122 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~-lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~--~ 122 (697)
....+..|.+++..+.++++++++||||||||+. ++..+.. ..++.++++++|+++|+.|.+.. .++...+. .
T Consensus 77 G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~ 154 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVR 154 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCcee
Confidence 3467889999999999999999999999999952 2222222 12456789999999999886544 23344332 2
Q ss_pred ceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc---C-------hhHHHHHH
Q 005436 123 VGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---S-------TDILLGLL 187 (697)
Q Consensus 123 ~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~---~-------~d~l~~~l 187 (697)
+....|.....+. ....+..+|+|+||+.|.+.+.... ..++++|||||||...- + .+|...+.
T Consensus 155 v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~ 233 (1638)
T PRK14701 155 LVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEII 233 (1638)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHH
Confidence 2333332111111 1112258999999998887654321 26799999999994321 0 12222222
Q ss_pred H----HH------------------H----HhCCCce-EEEecccccH-HHHHHHhhcCcCCCCCcccccCCCCCCcEEE
Q 005436 188 K----KI------------------Q----RCRSDLR-LIISSATIEA-KSMSAFFHARKGRRGLEGVELVPRLEPAILS 239 (697)
Q Consensus 188 ~----~~------------------~----~~~~~~~-ii~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (697)
. .+ . ......+ ++++|||++. .....++.... .+.
T Consensus 234 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-----------------~f~ 296 (1638)
T PRK14701 234 EKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-----------------GFE 296 (1638)
T ss_pred HHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-----------------EEE
Confidence 1 10 0 1122333 5779999964 34445554322 222
Q ss_pred eccce---eeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH---HHHHHHHHHHHhhhccCCCCCeEEE
Q 005436 240 VEGRG---FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLIIL 313 (697)
Q Consensus 240 ~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (697)
+.... ..+...|......+ .. .+..+.... +.+.||||++++. ++.+++.|.+. ++.+.
T Consensus 297 v~~~~~~lr~i~~~yi~~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~ 361 (1638)
T PRK14701 297 VGSGRSALRNIVDVYLNPEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIE 361 (1638)
T ss_pred ecCCCCCCCCcEEEEEECCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEE
Confidence 22221 12333443222111 11 222332222 4578999999875 47888888765 89999
Q ss_pred EecCCCCHHHHhhccCCCCCCCcEEEEec----CccccccCCCC-eEEEEecCccccee----ecCCCCcccccccccCH
Q 005436 314 PLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQRF----YNPISDIENLVVAPISK 384 (697)
Q Consensus 314 ~lh~~l~~~~r~~v~~~f~~g~~kilvaT----~i~e~Gvdip~-v~~VId~g~~k~~~----yd~~~~~~~l~~~~~S~ 384 (697)
.+||+ |..+++.|++|+.+||||| +++++|||+|+ |+|||++|.+|.+. |...... + +. .
T Consensus 362 ~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~ 430 (1638)
T PRK14701 362 LVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-L 430 (1638)
T ss_pred Eecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-c
Confidence 99995 8889999999999999999 59999999999 99999999877431 1111100 0 01 2
Q ss_pred HhHHHhhcccCCC-CCcEEEEccChh
Q 005436 385 ASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 385 ~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
....++.|||||. .++.++..+..+
T Consensus 431 ~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 431 LSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred hHHHHHhhhhcccCCcchhHHHhHHH
Confidence 3455778999998 577776544443
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=2.9e-23 Score=236.75 Aligned_cols=317 Identities=19% Similarity=0.173 Sum_probs=182.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-cccCCCeEEEEECccHHHHHHHHHHHHH----Hh-CCc
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAE----EM-GVK 122 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~~~~~~~~~----~~-~~~ 122 (697)
...++.|+.+.+...+...+||.||||+|||..+-.++... ......++++..|+++++.+ +.+|+.+ .+ ...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~-m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANA-MLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHH-HHHHHHHHHHHhcCCCc
Confidence 34678888776555567889999999999994433332211 11223567888888877765 3444432 22 234
Q ss_pred ceeEEeeEe---ecCC-------------------------cCCCCCceEEEechHHHHHHHhcCC--CCCC----CcEE
Q 005436 123 VGEEVGYTI---RFED-------------------------FTNKDLTAIKFLTDGVLLREMMDDP--LLTK----YSVI 168 (697)
Q Consensus 123 ~~~~~g~~~---~~~~-------------------------~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~----~~~i 168 (697)
+...+|... .+.. ....--..|+|+|...++......+ .++. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 444455221 0000 0000126899999988875444322 1232 3589
Q ss_pred EEeCCCcCCcChh-HHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCc---ccccCC---CCCCcEEEec
Q 005436 169 MVDEAHERSISTD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLE---GVELVP---RLEPAILSVE 241 (697)
Q Consensus 169 IiDE~Her~~~~d-~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~ 241 (697)
||||+|.....+. ++..+++.+.. ...++|+||||++.....+++.......... ..+... ......+...
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 9999996554333 33444444333 3567999999997765544443211000000 000000 0000001111
Q ss_pred c------ceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 005436 242 G------RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (697)
Q Consensus 242 ~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (697)
. ....+.+..............+..+.... ..++++||||||++.++++++.|++.. .....+..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~ll 593 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLF 593 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEE
Confidence 0 11122222111110011122233333222 356789999999999999999998652 124679999
Q ss_pred cCCCCHHHHh----hccCCC-CCCC---cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhH
Q 005436 316 YSGLSRAEQE----QVFSPT-PRGK---RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASA 387 (697)
Q Consensus 316 h~~l~~~~r~----~v~~~f-~~g~---~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~ 387 (697)
||.++..+|. ++++.| ++|+ .+|||||+++|+||||+ ++++|.. ..+..++
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsL 652 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLL 652 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHH
Confidence 9999999994 566667 5665 47999999999999995 6777742 2345789
Q ss_pred HHhhcccCCC
Q 005436 388 RQRAGRAGRV 397 (697)
Q Consensus 388 ~Qr~GRaGR~ 397 (697)
+||+||+||.
T Consensus 653 iQRaGR~~R~ 662 (878)
T PRK09694 653 FQRLGRLHRH 662 (878)
T ss_pred HHHHhccCCC
Confidence 9999999997
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=7.2e-24 Score=233.34 Aligned_cols=324 Identities=19% Similarity=0.179 Sum_probs=198.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcce
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~ 124 (697)
+..+..|....-.+.+|+ |..++||+||| +.+|.++... .+..+.+++|++.||.| +....+.+.+|++++
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~ 129 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVG 129 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 344444544444444444 99999999999 4445443332 34568999999999998 444567777888888
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcCh--------------hH
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST--------------DI 182 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~--------------d~ 182 (697)
..+|.....+..... .++|+|+|++.| ++.+..+ ..++.+.++||||+|...++. +.
T Consensus 130 ~i~g~~~~~~r~~~y-~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 130 LILSGMSPEERREAY-ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 777743332222333 579999999998 6666544 137889999999999322210 11
Q ss_pred HHHHHHHHHH-hC--------CCceEEEecccccHHHHHHHhhcCc--------------------------C-------
Q 005436 183 LLGLLKKIQR-CR--------SDLRLIISSATIEAKSMSAFFHARK--------------------------G------- 220 (697)
Q Consensus 183 l~~~l~~~~~-~~--------~~~~ii~~SAT~~~~~~~~~~~~~~--------------------------~------- 220 (697)
+......+.+ .. .+-+-+.++.-- .+...++|+... .
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G-~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKG-IKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHH-HHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 1111111111 11 011222222110 011111111000 0
Q ss_pred --------------CCCCcc-----------------------------------------------cccCCCCCCcEEE
Q 005436 221 --------------RRGLEG-----------------------------------------------VELVPRLEPAILS 239 (697)
Q Consensus 221 --------------~~~~~~-----------------------------------------------~~~~~~~~~~~~~ 239 (697)
...|.. .+........++.
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 367 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVV 367 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEE
Confidence 000000 0000001122444
Q ss_pred eccceeeeEEEecCC---CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 005436 240 VEGRGFNVQIHYVEE---PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (697)
Q Consensus 240 ~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (697)
+|.........+.+. ...+.....+..+...+. .+.++||||++.+.++.+++.|.+. ++....+|
T Consensus 368 IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Ln 436 (745)
T TIGR00963 368 VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLN 436 (745)
T ss_pred eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEee
Confidence 444322111111111 111223344444444443 5778999999999999999999876 78888999
Q ss_pred CCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCC-------eEEEEecCcccceeecCCCCcccccccccCHHhHHH
Q 005436 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG-------IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (697)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~-------v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Q 389 (697)
|. ..+|+..+..++.+...|+||||+|++|+||+. ..+||.+.+ |.|...+.|
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q 496 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQ 496 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHH
Confidence 98 778888888899999999999999999999998 449998776 889999999
Q ss_pred hhcccCCC-CCcEEEEccChhH
Q 005436 390 RAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 390 r~GRaGR~-~~G~~~~l~~~~~ 410 (697)
|.||+||. .||.+..+++.++
T Consensus 497 ~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 497 LRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred HhccccCCCCCcceEEEEeccH
Confidence 99999999 8999998888653
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=1.8e-23 Score=247.11 Aligned_cols=280 Identities=20% Similarity=0.178 Sum_probs=177.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH-HHHHHHHhccccCCCeEEEEECccHHHHHHH--HHHHHHHhCCcc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMGVKV 123 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~-~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~--~~~~~~~~~~~~ 123 (697)
.....++.|...+..+..+++++++||||||||+ .++..... ...+.++++++|+|+|+.|.. .+.+....+...
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 4457889999999999999999999999999995 33333222 124568999999999998843 334455555443
Q ss_pred e---eEEeeEeecC-----CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC---hh-------H---
Q 005436 124 G---EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TD-------I--- 182 (697)
Q Consensus 124 ~---~~~g~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d-------~--- 182 (697)
. ..+|.....+ .....+..+|+|+||+.|.+.+..-. .+++++|+||||...-. .| |
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e 230 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASKNVDKLLKLLGFSEE 230 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccccHHHHHHHcCCCHH
Confidence 2 2233211111 01112258999999999987765421 28999999999933211 11 1
Q ss_pred -HHHHHHH-------------------HHHhCCCc--eEEEecccccHHHHH-HHhhcCcCCCCCcccccCCCCCCcEEE
Q 005436 183 -LLGLLKK-------------------IQRCRSDL--RLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILS 239 (697)
Q Consensus 183 -l~~~l~~-------------------~~~~~~~~--~ii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (697)
+..++.. +.....+. .++++|||..+.... .+|.... .+.
T Consensus 231 ~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----------------~~~ 293 (1171)
T TIGR01054 231 LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL-----------------GFE 293 (1171)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc-----------------ceE
Confidence 1111110 11112222 367789995322222 2332211 112
Q ss_pred eccc---eeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCH---HHHHHHHHHHHHHhhhccCCCCCeEEE
Q 005436 240 VEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ---DDIDATIQLLTEEARTSKKNSSGLIIL 313 (697)
Q Consensus 240 ~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (697)
+... ...+...|..... .... +..+... .+.++||||+++ +.++.+++.|.+. ++.+.
T Consensus 294 v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~-l~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~ 357 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVEDED--LKET----LLEIVKK-LGTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAV 357 (1171)
T ss_pred ecCccccccceEEEEEeccc--HHHH----HHHHHHH-cCCCEEEEEeccccHHHHHHHHHHHHhC---------CceEE
Confidence 2111 1233444433221 1111 2222222 235689999998 9999999999765 78999
Q ss_pred EecCCCCHHHHhhccCCCCCCCcEEEEe----cCccccccCCCC-eEEEEecCccccee
Q 005436 314 PLYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRF 367 (697)
Q Consensus 314 ~lh~~l~~~~r~~v~~~f~~g~~kilva----T~i~e~Gvdip~-v~~VId~g~~k~~~ 367 (697)
.+||+++. .+++.|++|+.+|||| |+++++|||+|+ |++||++|.++.+.
T Consensus 358 ~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 358 AYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred EEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 99999973 6789999999999999 599999999999 89999999987643
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=8.6e-24 Score=230.76 Aligned_cols=340 Identities=17% Similarity=0.174 Sum_probs=215.8
Q ss_pred cHHHHHHHH--HHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHH--HHHHHhCCcceeE
Q 005436 51 VYKYRTAIL--YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVGEE 126 (697)
Q Consensus 51 i~~~q~~i~--~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~~~~~~ 126 (697)
.|.+|.+-+ ..+.++++.|..+||+.|||......++......+..++.+.|--....+.... -+....|..+..+
T Consensus 224 ~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y 303 (1008)
T KOG0950|consen 224 LFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEY 303 (1008)
T ss_pred HHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhh
Confidence 445555432 345688999999999999996666666655555556677777777666554332 2333445555433
Q ss_pred EeeEeecCCcCCCCCceEEEechHHHH---HHHhcCCCCCCCcEEEEeCCCcCC--cChhHHHHHHHHHHH--hCCCceE
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVLL---REMMDDPLLTKYSVIMVDEAHERS--ISTDILLGLLKKIQR--CRSDLRL 199 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~Ll---~~l~~~~~l~~~~~iIiDE~Her~--~~~d~l~~~l~~~~~--~~~~~~i 199 (697)
. -++..........+.+||.++-. +.+.....+..++.|||||.|-.+ -....+..++.++.. ....+++
T Consensus 304 ~---g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~i 380 (1008)
T KOG0950|consen 304 A---GRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQI 380 (1008)
T ss_pred c---ccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeE
Confidence 3 33333333336889999998744 445555557889999999999211 111244445555444 2334779
Q ss_pred EEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCC--cEEEeccceeeeEEE---ecCC-CcchHHHHHHHHHHHHHh
Q 005436 200 IISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEP--AILSVEGRGFNVQIH---YVEE-PVSDYVQAAVSTVLLIHD 272 (697)
Q Consensus 200 i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~---~~~~-~~~~~~~~~~~~~~~~~~ 272 (697)
|+||||+ |.+.+++|++........+++++.....+ .+.... +.-.+... +... ...|. +..+.......
T Consensus 381 IGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dp-D~~v~L~tet~- 457 (1008)
T KOG0950|consen 381 IGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDP-DHLVGLCTETA- 457 (1008)
T ss_pred eeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCC-cceeeehhhhh-
Confidence 9999999 89999999997665555555544322110 000000 00000000 0000 00000 00000000110
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc-----------------------------cCCCCCeEEEEecCCCCHHH
Q 005436 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTS-----------------------------KKNSSGLIILPLYSGLSRAE 323 (697)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~-----------------------------~~~~~~~~v~~lh~~l~~~~ 323 (697)
..+.++|||||++..++.++..+....+.. ....-...+.++|+|++.++
T Consensus 458 -~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eE 536 (1008)
T KOG0950|consen 458 -PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEE 536 (1008)
T ss_pred -hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccch
Confidence 124459999999999999987766544321 01122345899999999999
Q ss_pred HhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCc
Q 005436 324 QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPG 400 (697)
Q Consensus 324 r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G 400 (697)
|+.+...|++|...|++||+++..|+|+|..+++|-+-+ +.....+..+|.||+|||||+ .-|
T Consensus 537 R~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~G 602 (1008)
T KOG0950|consen 537 REIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLG 602 (1008)
T ss_pred HHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCc
Confidence 999999999999999999999999999999999996443 223367889999999999999 668
Q ss_pred EEEEccChhHh
Q 005436 401 KCYRLYTEEYF 411 (697)
Q Consensus 401 ~~~~l~~~~~~ 411 (697)
.++..+.+.+.
T Consensus 603 dsiLI~k~~e~ 613 (1008)
T KOG0950|consen 603 DSILIIKSSEK 613 (1008)
T ss_pred ceEEEeeccch
Confidence 99999886653
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=9.6e-23 Score=239.19 Aligned_cols=334 Identities=20% Similarity=0.276 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHHHh-----cCCEEEEEcCCCChHHHHHHHHHHhc-cccCCCeEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 49 LPVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 49 lPi~~~q~~i~~~l~-----~~~~~ii~apTGsGKT~~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
+.++.+|.++++++. ..+..+|++|||||||..+..++... ......+++++++.+.|..|..... .. .+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F-~~-~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAF-KD-TKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHH-Hh-cccc
Confidence 346789988887664 24678999999999994433333221 1123457899999999998865542 22 1111
Q ss_pred ceeEE-e-eEee-cCCcCCCCCceEEEechHHHHHHHhcC------CCCCCCcEEEEeCCCcCCcChh-------H----
Q 005436 123 VGEEV-G-YTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD------PLLTKYSVIMVDEAHERSISTD-------I---- 182 (697)
Q Consensus 123 ~~~~~-g-~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~------~~l~~~~~iIiDE~Her~~~~d-------~---- 182 (697)
..... + +... ..........+|+|+|.+.+.+.+... +.+..+++||||||| |+...| .
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccch
Confidence 11000 0 1111 111112225899999999998775321 236789999999999 664211 0
Q ss_pred ---HHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcc---cccCCCC-CCcEEEe----ccceeee----
Q 005436 183 ---LLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEG---VELVPRL-EPAILSV----EGRGFNV---- 247 (697)
Q Consensus 183 ---l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~----~~~~~~v---- 247 (697)
.....+.+.... +..+|+||||+... ..++|+.......... ...+... .+..+.. .|-.+..
T Consensus 569 ~~~~~~~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 569 QLDYVSKYRRVLDYF-DAVKIGLTATPALH-TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhHHHHHHHHHhhc-CccEEEEecCCccc-hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 022334444433 46789999999533 3466764221111110 0001000 0111110 0000000
Q ss_pred E--------E--EecCC----Ccch---------HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 005436 248 Q--------I--HYVEE----PVSD---------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK 304 (697)
Q Consensus 248 ~--------~--~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~ 304 (697)
+ + ...++ ...+ .....+..+........++++||||.++++++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0 0 00000 0000 0111112222222223458999999999999999999987653321
Q ss_pred CCCCCeEEEEecCCCCHHHHhhccCCCCCCCc-EEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccC
Q 005436 305 KNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (697)
Q Consensus 305 ~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~-kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S 383 (697)
.......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||.... +.|
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS 786 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRS 786 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCC
Confidence 1222345667888875 45678999998876 79999999999999999999997433 668
Q ss_pred HHhHHHhhcccCCCCC--cE-EEEccC
Q 005436 384 KASARQRAGRAGRVRP--GK-CYRLYT 407 (697)
Q Consensus 384 ~~~~~Qr~GRaGR~~~--G~-~~~l~~ 407 (697)
...|+||+||+.|..+ |+ .+.+++
T Consensus 787 ~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 787 RILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHHhhhccCCccCCCceEEEEe
Confidence 8999999999999966 43 455555
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.9e-22 Score=227.57 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=211.8
Q ss_pred HHHHHHHHHH----hcCC--EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc--e
Q 005436 53 KYRTAILYLV----ETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV--G 124 (697)
Q Consensus 53 ~~q~~i~~~l----~~~~--~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~--~ 124 (697)
+-|...++.+ .+++ +=+|||.-|-|||-++.-..... ...++++.+++||.-|+.|-+..+..+.-|.++ +
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~ 675 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIE 675 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEE
Confidence 3444444444 3333 45999999999996665555444 335678999999998888765554444444433 3
Q ss_pred eEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceE
Q 005436 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 125 ~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~i 199 (697)
...-+....+. ....+..+|+|+|...| ..+-.+.+++++||||-|..++. .-.++...+.++.+
T Consensus 676 ~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~VDv 745 (1139)
T COG1197 676 VLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVK------HKEKLKELRANVDV 745 (1139)
T ss_pred EecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCcc------HHHHHHHHhccCcE
Confidence 32222222111 11234789999998643 34445899999999999965543 33445556788999
Q ss_pred EEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEE-EeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCc
Q 005436 200 IISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (697)
Q Consensus 200 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (697)
+-||||+=+..+.--+.+... ..++ ..|...+||..+..+....-..+.....+ ..+|+
T Consensus 746 LTLSATPIPRTL~Msm~GiRd--------------lSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQ 805 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRD--------------LSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQ 805 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchh--------------hhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCE
Confidence 999999955555543333221 0133 23456678888777655333222222222 46899
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEE
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VI 358 (697)
+-...|..++++++++.|++.. |...|.+.||.|+..+-++++..|-+|+.+|||||.|.|+|||||+++.+|
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 9999999999999999999875 688999999999999999999999999999999999999999999999887
Q ss_pred ecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 359 d~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
- .++. -.--++..|-.||+||. ..|.||.+|.+..
T Consensus 879 I--------e~AD---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 879 I--------ERAD---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred E--------eccc---------cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 4 1111 12235566999999999 8899999998643
No 99
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=196.59 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=218.9
Q ss_pred CCCCCCccchhhHHHHhcCC-CcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHH
Q 005436 30 SSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 30 ~~~~~~~~~~~~~~~~r~~l-Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
.++|.|.+. ..+.+....| ...+.|.+.+.+...+..+++..|||.||| +++|.++.+ +-.+++.|...|
T Consensus 74 d~fpws~e~-~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g~alvi~plisl 146 (695)
T KOG0353|consen 74 DDFPWSDEA-KDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------GFALVICPLISL 146 (695)
T ss_pred CCCCCchHH-HHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------CceEeechhHHH
Confidence 346777765 3444443333 245668888999999999999999999999 888876643 447899999999
Q ss_pred HHHHHHHHHHHHhCCcceeEEeeEee-----cCC-cCC-CCCceEEEechHHHHHH------HhcCCCCCCCcEEEEeCC
Q 005436 107 AVQAVASRVAEEMGVKVGEEVGYTIR-----FED-FTN-KDLTAIKFLTDGVLLRE------MMDDPLLTKYSVIMVDEA 173 (697)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~-~~~-~~~~~I~v~T~~~Ll~~------l~~~~~l~~~~~iIiDE~ 173 (697)
...+... .+.+|+........... .+. ..+ ...-+++|.||+.+... +........+.+|-|||+
T Consensus 147 medqil~--lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 147 MEDQILQ--LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHH--HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 8877655 44555543222221110 011 111 12578999999987642 222223667899999999
Q ss_pred CcCCcC-hhHH--HHHHHHHHHhCCCceEEEecccccHHHH---HHHhhcCcCCCCCcccccCCCCCCcEEEeccceeee
Q 005436 174 HERSIS-TDIL--LGLLKKIQRCRSDLRLIISSATIEAKSM---SAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNV 247 (697)
Q Consensus 174 Her~~~-~d~l--~~~l~~~~~~~~~~~ii~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 247 (697)
|.-+.+ .||. ...+..+.+..++..+|+++||.....+ .+.++-... -..+. -+.-+.-.|
T Consensus 225 hccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~-~tf~a----------~fnr~nl~y-- 291 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA-FTFRA----------GFNRPNLKY-- 291 (695)
T ss_pred eehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-heeec----------ccCCCCcee--
Confidence 954422 2221 1233344457789999999999833322 233321110 00000 000011111
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
++.--+....+..+.....+ .....+...+|||-+++++++++..|+.. ++....+|+.|.++++.-+
T Consensus 292 ev~qkp~n~dd~~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 292 EVRQKPGNEDDCIEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred EeeeCCCChHHHHHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccc
Confidence 12222233344444444333 22334566799999999999999999876 8999999999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHH------------------
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ------------------ 389 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Q------------------ 389 (697)
-+.+..|++.|||||-.+++|||-|+|++||+-.+ |-|...|.|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkqknksdt 421 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQKNKSDT 421 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhhcccccC
Confidence 99999999999999999999999999999998666 667777778
Q ss_pred -------------------------hhcccCCC-CCcEEEEccChhH
Q 005436 390 -------------------------RAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 390 -------------------------r~GRaGR~-~~G~~~~l~~~~~ 410 (697)
..|||||. .+..|+..|.-.+
T Consensus 422 ggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 422 GGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred CCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 78999999 7888988887443
No 100
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.9e-22 Score=186.81 Aligned_cols=313 Identities=18% Similarity=0.181 Sum_probs=206.8
Q ss_pred CCCCcccc-ccccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCC
Q 005436 18 EEGGVVFL-SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADG 94 (697)
Q Consensus 18 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~ 94 (697)
..++-.+| +++|.++-++++..+++.+..-.-|-.-+++-|.+++..-+ ++.+|..|.||| +.+..+-........
T Consensus 32 ~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~g~ 110 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVDGQ 110 (387)
T ss_pred ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCCCe
Confidence 34444444 66899999999999999999999999988898999987654 899999999999 333322222222222
Q ss_pred CeEEEEECccHHHHH--HHHHHHHHHh-CCcceeEEee-EeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEE
Q 005436 95 GRVIACTQPRRLAVQ--AVASRVAEEM-GVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIM 169 (697)
Q Consensus 95 ~~~Ivv~p~r~l~~~--~~~~~~~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iI 169 (697)
-.+++..++|+|+-| .-..|+++.+ +.++....|. .+..+...-...++|+|+|||.++...++..+ +.++.+.|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceee
Confidence 346889999999998 3445667665 5667666663 33333222233789999999999999888776 99999999
Q ss_pred EeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc----
Q 005436 170 VDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---- 243 (697)
Q Consensus 170 iDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 243 (697)
+|||+...-..|....+....+....+-+++.+|||++. ..+..-|...|. -+.+...
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPm----------------Ei~vDdE~KLt 254 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPM----------------EIFVDDEAKLT 254 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCch----------------hhhccchhhhh
Confidence 999995433445555555555556678899999999943 333333332221 0111110
Q ss_pred eeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH
Q 005436 244 GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (697)
Q Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (697)
.+....+|..-....... .+.++.....-.+++||+.+...+ +
T Consensus 255 LHGLqQ~YvkLke~eKNr----kl~dLLd~LeFNQVvIFvKsv~Rl------------------------------~--- 297 (387)
T KOG0329|consen 255 LHGLQQYYVKLKENEKNR----KLNDLLDVLEFNQVVIFVKSVQRL------------------------------S--- 297 (387)
T ss_pred hhhHHHHHHhhhhhhhhh----hhhhhhhhhhhcceeEeeehhhhh------------------------------h---
Confidence 112222332221111111 111122222335678887765430 0
Q ss_pred HhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEE
Q 005436 324 QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (697)
Q Consensus 324 r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~ 402 (697)
| ..+ +|||+++++|+||..|+.|+++++ |-+..+|.||.|||||. ..|.+
T Consensus 298 -------f---~kr-~vat~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 298 -------F---QKR-LVATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLA 348 (387)
T ss_pred -------h---hhh-hHHhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccce
Confidence 2 123 899999999999999999999777 77788888999999999 78999
Q ss_pred EEccChhHhhh
Q 005436 403 YRLYTEEYFVK 413 (697)
Q Consensus 403 ~~l~~~~~~~~ 413 (697)
+.+.+.+.-..
T Consensus 349 itfvs~e~da~ 359 (387)
T KOG0329|consen 349 ITFVSDENDAK 359 (387)
T ss_pred eehhcchhhHH
Confidence 99998654433
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.84 E-value=1.3e-19 Score=208.21 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=98.1
Q ss_pred HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC--CcEEEEecCc
Q 005436 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNI 344 (697)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~kilvaT~i 344 (697)
+..+.....+.++||||+++..+..+++.|... .++.+..+||+|+..+|.++++.|+++ ..+|+|||++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 344444445778999999999999999999644 278999999999999999999999874 6999999999
Q ss_pred cccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCc--EEEEccChh
Q 005436 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG--KCYRLYTEE 409 (697)
Q Consensus 345 ~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G--~~~~l~~~~ 409 (697)
+++|+|++.+++||++++ |.+...|.||+||+||. +.| .+|.++.+.
T Consensus 556 gseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred hccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999777 88889999999999998 334 344554443
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.3e-19 Score=198.49 Aligned_cols=107 Identities=25% Similarity=0.297 Sum_probs=96.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCC--
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL-- 351 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdi-- 351 (697)
..+.++||||+++..++.+++.|.+. ++....+|+.+...|+..+..+++.|. |+||||+|++|.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l 506 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKL 506 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCC
Confidence 35788999999999999999999876 788899999999988888888888776 99999999999999
Q ss_pred -CCeE-----EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 352 -EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 352 -p~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
++|. +||.+.+ |-|...+.|+.||+||. .||.+..+++-+
T Consensus 507 ~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 507 GPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred CcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 4899 9998766 88999999999999999 899998888855
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.6e-19 Score=196.07 Aligned_cols=124 Identities=22% Similarity=0.232 Sum_probs=84.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~ 122 (697)
+.|-...+--+++-++.=++--|..++||+||| +.+|.++... .+..+.+++|++.||.| .....+.+.+|+.
T Consensus 77 R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred HHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 344444444445555444445589999999999 4455554332 34568999999999988 4455566777888
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcCCC-------CCCCcEEEEeCCC
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-------LTKYSVIMVDEAH 174 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~~~-------l~~~~~iIiDE~H 174 (697)
++..+|.....+..... .++|+|+||+.| ++.+..+.. ...+.++||||||
T Consensus 154 v~~i~gg~~~~~r~~~y-~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAY-KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred EEEEeCCCCHHHHHHHh-CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 88777743222222223 589999999999 777766522 2689999999999
No 104
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.82 E-value=2.7e-20 Score=163.38 Aligned_cols=101 Identities=50% Similarity=0.928 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCcccCCC-------------cchHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCC
Q 005436 584 EQLRRIAQRIGIVMKSC-------------ESDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFR 650 (697)
Q Consensus 584 ~ql~~~l~~~~~~~~~~-------------~~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~ 650 (697)
+||.++|++.|+...+. ..+.+.+++||++|||+|+|++. .++.|++..++..++|||+|++++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~---~~~~y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRD---NKGSYKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE----TTSSEEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeC---CCCCEEEecCCCEEEEecCccccc
Confidence 58889999988865321 13457899999999999999987 567899997777999999999999
Q ss_pred CCCcEEEEEeecccchhhcccccccCHHHHHhHcccc
Q 005436 651 VNPKWVIYHSLVSTDRQYMRNVISIDPSWLLEVAPHF 687 (697)
Q Consensus 651 ~~~~~vv~~e~~~t~~~~ir~vt~i~~~wl~~~~~~~ 687 (697)
.+|+||+|+|+++|+|.|||+||+|+|+||..++|++
T Consensus 78 ~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 78 KPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp TT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred cccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999999975
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.9e-19 Score=196.31 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEE
Q 005436 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (697)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilv 340 (697)
......+...+ ..+.++||||++++.++.+++.|.+. ++....+||. ..+|+..+..|+.+...|+|
T Consensus 417 ~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtI 483 (830)
T PRK12904 417 DAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTI 483 (830)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEE
Confidence 33444443333 35778999999999999999999876 7888999996 77888889999999999999
Q ss_pred ecCccccccCCCCe---EEEEecCcc----------------cceeecCCCCcccccc-cccCHHhHHHhhcccCCC-CC
Q 005436 341 STNIAETSLTLEGI---VYVVDSGFS----------------KQRFYNPISDIENLVV-APISKASARQRAGRAGRV-RP 399 (697)
Q Consensus 341 aT~i~e~Gvdip~v---~~VId~g~~----------------k~~~yd~~~~~~~l~~-~~~S~~~~~Qr~GRaGR~-~~ 399 (697)
|||+|++|+||+== .+.....+. ....--...|+-.+.+ .+-|..-=.|-.|||||. .|
T Consensus 484 ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 484 ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCC
Confidence 99999999999721 000000000 0000000112222222 155666667999999999 88
Q ss_pred cEEEEccC
Q 005436 400 GKCYRLYT 407 (697)
Q Consensus 400 G~~~~l~~ 407 (697)
|.+-.+.|
T Consensus 564 Gss~f~lS 571 (830)
T PRK12904 564 GSSRFYLS 571 (830)
T ss_pred CceeEEEE
Confidence 98777776
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=1e-18 Score=190.10 Aligned_cols=162 Identities=20% Similarity=0.165 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEECccHHHHHHHHHHHHHHhCCcc--e
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRRLAVQAVASRVAEEMGVKV--G 124 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~--~ 124 (697)
+--..+|.+.+..+..++.++|+|||.+|||+.-+-.+ +.-+ .+.+.+|+|+|++++..|..+...+.+....+ |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 44568999999999999999999999999995443322 2211 14567899999999999866665555422111 1
Q ss_pred -eEEe-eEeecCCcCCCCCceEEEechHHHHHHHhcC----CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 125 -EEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDD----PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 125 -~~~g-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~----~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
...| ++..+ ..+.-+++|.|+-|+.+-..+... .+..++++||+||+|..+...|- +++...-.-....
T Consensus 589 ~sl~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~---l~~Eqll~li~CP 663 (1330)
T KOG0949|consen 589 VSLLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG---LLWEQLLLLIPCP 663 (1330)
T ss_pred hhhHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc---hHHHHHHHhcCCC
Confidence 1122 11111 112227899999999998887764 35889999999999965533221 1111111223567
Q ss_pred EEEecccc-cHHHHHHHhh
Q 005436 199 LIISSATI-EAKSMSAFFH 216 (697)
Q Consensus 199 ii~~SAT~-~~~~~~~~~~ 216 (697)
++++|||+ |++.+..|++
T Consensus 664 ~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecccCCHHHHHHHHH
Confidence 99999999 9999999987
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.79 E-value=1.6e-18 Score=198.84 Aligned_cols=312 Identities=19% Similarity=0.163 Sum_probs=173.9
Q ss_pred CcHHHHHHHHHHHhc---CC-EEEEEcCCCChHHHHHHHHHHhccc---cCCCeEEEEECccHHHHHHHHHHHHHHhC--
Q 005436 50 PVYKYRTAILYLVET---HA-TTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMG-- 120 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~---~~-~~ii~apTGsGKT~~lp~~l~~~~~---~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~-- 120 (697)
+.+..|..+++.+.+ .. .+++.||||+|||++...+...... ....++|++.|.+.+..+.. +++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~-~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMY-RRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHH-HHHHhhhccc
Confidence 456677777766643 34 8999999999999554433322211 13567788888877776543 33443222
Q ss_pred Cccee-EEeeEee-----c----------CCcCCCCCceEEEechHHHHHHHhcC-CCC----CCCcEEEEeCCCcCCcC
Q 005436 121 VKVGE-EVGYTIR-----F----------EDFTNKDLTAIKFLTDGVLLREMMDD-PLL----TKYSVIMVDEAHERSIS 179 (697)
Q Consensus 121 ~~~~~-~~g~~~~-----~----------~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l----~~~~~iIiDE~Her~~~ 179 (697)
...+. ..|.... . .+.....-..+.++|+-..+...... ... -..+++|+||+|-...+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 11122 2221110 0 00000001223334443333211111 111 23579999999944444
Q ss_pred --hhHHHHHHHHHHHhCCCceEEEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCC
Q 005436 180 --TDILLGLLKKIQRCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE 254 (697)
Q Consensus 180 --~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 254 (697)
..++.+++..+.. .+.++|+||||++...-. .+++........ .......+. +.+.....
T Consensus 354 ~~~~~l~~~i~~l~~--~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~e-~~~~~~~~-- 418 (733)
T COG1203 354 TMLAALLALLEALAE--AGVPVLLMSATLPPFLKEKLKKALGKGREVVEN----------AKFCPKEDE-PGLKRKER-- 418 (733)
T ss_pred chHHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHhcccceecc----------ccccccccc-cccccccc--
Confidence 2334444444333 467899999999765333 333322210000 000000000 00000000
Q ss_pred CcchHHHHH--HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC-
Q 005436 255 PVSDYVQAA--VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT- 331 (697)
Q Consensus 255 ~~~~~~~~~--~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f- 331 (697)
.+..... ............+++++|-|||+..+.++++.|+... ..+..+||.+...+|.+.++.+
T Consensus 419 --~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 419 --VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG---------PKVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred --hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC---------CCEEEEecccchhhHHHHHHHHH
Confidence 0000000 0011111223467889999999999999999998762 2799999999999999887733
Q ss_pred ---CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCC---CcEEEEc
Q 005436 332 ---PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRL 405 (697)
Q Consensus 332 ---~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~---~G~~~~l 405 (697)
..+...|+|||++.|.|||+. .+++| +.+.+..+.+||+||++|.+ +|..|..
T Consensus 488 ~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 488 KLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred HHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 346788999999999999988 45544 44778889999999999995 5666655
Q ss_pred cChh
Q 005436 406 YTEE 409 (697)
Q Consensus 406 ~~~~ 409 (697)
....
T Consensus 547 ~~~~ 550 (733)
T COG1203 547 NDEE 550 (733)
T ss_pred eccc
Confidence 5433
No 108
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.79 E-value=1.9e-19 Score=179.72 Aligned_cols=289 Identities=20% Similarity=0.239 Sum_probs=183.3
Q ss_pred CeEEEEECccHHHHHHHHH--HHHHHh-CCcce--eEEe-eEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcE
Q 005436 95 GRVIACTQPRRLAVQAVAS--RVAEEM-GVKVG--EEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSV 167 (697)
Q Consensus 95 ~~~Ivv~p~r~l~~~~~~~--~~~~~~-~~~~~--~~~g-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~ 167 (697)
...|++-|+|+++.|...+ .+.... +-.+. ..+| ...+.+.....+.++|+|+||+++++.+..... +....+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 4679999999999885432 222222 11111 2233 333333333445799999999999998877665 889999
Q ss_pred EEEeCCCcCC--cChhHHHHHHHHHHHh---CCCceEEEecccc---cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEE
Q 005436 168 IMVDEAHERS--ISTDILLGLLKKIQRC---RSDLRLIISSATI---EAKSMSAFFHARKGRRGLEGVELVPRLEPAILS 239 (697)
Q Consensus 168 iIiDE~Her~--~~~d~l~~~l~~~~~~---~~~~~ii~~SAT~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (697)
+|+||++... .+.|++..+...+... ...++.+++|||+ +...+.+-...-+.-...+..+..+.....++.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999322 3445555554444442 3458899999998 444444333222221111111111110000000
Q ss_pred -----eccceeee----EE-------EecCC-CcchHHHHHHHHH-----HHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 005436 240 -----VEGRGFNV----QI-------HYVEE-PVSDYVQAAVSTV-----LLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (697)
Q Consensus 240 -----~~~~~~~v----~~-------~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (697)
+.+..-.. +. ..... .......++...+ +.........+.++||.++.++..+.++++
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 00000000 00 00000 0000011111111 111122345679999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccc
Q 005436 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (697)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l 377 (697)
+. +...+..+++||+..+.||.+-++.|+.+..+.++||+++++|+||.++-++|+.-+
T Consensus 527 qk------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------------- 585 (725)
T KOG0349|consen 527 QK------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------------- 585 (725)
T ss_pred Hc------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec---------------
Confidence 76 234688999999999999999999999999999999999999999999999999655
Q ss_pred cccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 378 ~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
|-.+.+|.||+||+||+ +-|.++.|+.
T Consensus 586 ---pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 ---PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---CcccchhhhhhhccchhhhcceeEEEee
Confidence 88899999999999999 8899998875
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.9e-18 Score=189.21 Aligned_cols=317 Identities=19% Similarity=0.201 Sum_probs=201.2
Q ss_pred CCCcHHHHHHHHHHHhcC----CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc
Q 005436 48 RLPVYKYRTAILYLVETH----ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~----~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~ 123 (697)
.+.+...|..+.+.+.+. ...++.|.||||||-...+++... ...|+.+|+++|-.++..|. ..++...+|.++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~-~~rf~~rFg~~v 273 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQL-LARFKARFGAKV 273 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHH-HHHHHHHhCCCh
Confidence 456778888888887655 789999999999995555555443 44677899999999998754 455677778777
Q ss_pred eeEEeeEeecC-----CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhH-HHH---HHHHHHHhC
Q 005436 124 GEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI-LLG---LLKKIQRCR 194 (697)
Q Consensus 124 ~~~~g~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~-l~~---~l~~~~~~~ 194 (697)
+..++.-...+ .....+..+|+++|-..+.-- +.++++|||||-|+-+...+- ... -+..++...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc------hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 76665222111 112234799999998776522 788999999999965432211 111 111222334
Q ss_pred CCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---e--eEEEecCCCcch----HHHHHHH
Q 005436 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---N--VQIHYVEEPVSD----YVQAAVS 265 (697)
Q Consensus 195 ~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--v~~~~~~~~~~~----~~~~~~~ 265 (697)
.+.++|+-|||+..+.+.....+... .+....|.. + +.+........+ .....++
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y~----------------~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~ 411 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKYK----------------LLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLE 411 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCceE----------------EEEccccccccCCCcceEEeccccccccCccCCHHHHH
Confidence 57889999999998877766333110 122222111 1 111111111100 1122222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHH----------------------------------------------------------
Q 005436 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (697)
.+.... ..+.++|+|+|.+.
T Consensus 412 ~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~ 489 (730)
T COG1198 412 AIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAV 489 (730)
T ss_pred HHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEe
Confidence 222222 34566777777766
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH--HhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcc
Q 005436 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE--QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (697)
Q Consensus 288 --~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~ 363 (697)
.++++.+.|.+.+ |+..+..+.++.+... -+..+..|.+|+.+|||.|++++.|.|+|+++.|.-.+
T Consensus 490 G~GterieeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~-- 560 (730)
T COG1198 490 GPGTERIEEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD-- 560 (730)
T ss_pred cccHHHHHHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe--
Confidence 3467777777765 5778888888776533 45678899999999999999999999999999874211
Q ss_pred cceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEE
Q 005436 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (697)
Q Consensus 364 k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~ 403 (697)
-|...+...+....-....+.|-+|||||. .+|.++
T Consensus 561 ----aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 561 ----ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred ----chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 112223333444455667788999999999 788654
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=8.3e-17 Score=174.96 Aligned_cols=349 Identities=16% Similarity=0.134 Sum_probs=191.2
Q ss_pred HHHHHHH----HHHHhcC-CEEEEEcCCCChHHHHHHHHHHh-ccccCCCeEEEEECccHHHHHHHHHHHHHHhCC-cce
Q 005436 52 YKYRTAI----LYLVETH-ATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVAEEMGV-KVG 124 (697)
Q Consensus 52 ~~~q~~i----~~~l~~~-~~~ii~apTGsGKT~~lp~~l~~-~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~-~~~ 124 (697)
..+|..+ .+++.++ +.++++++||+|||..+.+++.. .....-+++++++-.+.|..|.......-.... .+.
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n 246 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMN 246 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcccee
Confidence 4455444 4455444 56999999999999333333221 111233578999999999998775522221121 111
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-C----C-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-P----L-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~----~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
...++ .... .++|.++|.+.+....... . . ...+++||||||| |++..+.- +++..+-. -
T Consensus 247 ~i~~~------~~~~-s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFdA-----~ 312 (875)
T COG4096 247 KIEDK------KGDT-SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFDA-----A 312 (875)
T ss_pred eeecc------cCCc-ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHHH-----H
Confidence 11121 1112 5799999999998877554 1 2 4568999999999 87655432 33333222 2
Q ss_pred EEEecccccH-H--HHHHHhhcCc-CCCCCcc-cccCCCCCCcEEEeccceeeeEEEec---------------CCC---
Q 005436 199 LIISSATIEA-K--SMSAFFHARK-GRRGLEG-VELVPRLEPAILSVEGRGFNVQIHYV---------------EEP--- 255 (697)
Q Consensus 199 ii~~SAT~~~-~--~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~--- 255 (697)
.++++||+.. . .-..||++.| ..+.... +..-.-.+..++.++.+.-.-..++. ++.
T Consensus 313 ~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~ 392 (875)
T COG4096 313 TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFE 392 (875)
T ss_pred HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccc
Confidence 4566999822 1 2235674332 1221111 00000000112221111000000000 000
Q ss_pred ---------cchHHHHHHHHHHHHHhc--C--CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHH
Q 005436 256 ---------VSDYVQAAVSTVLLIHDK--E--PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA 322 (697)
Q Consensus 256 ---------~~~~~~~~~~~~~~~~~~--~--~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 322 (697)
.....+.....+...... . ..+++||||.+..+++.+...|....++ ..+--+..+.|.-...
T Consensus 393 ~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~ 468 (875)
T COG4096 393 ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQA 468 (875)
T ss_pred ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhh
Confidence 001112222233333333 1 1478999999999999999999887654 2234466666664433
Q ss_pred HHhhccCCC-CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCC--
Q 005436 323 EQEQVFSPT-PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP-- 399 (697)
Q Consensus 323 ~r~~v~~~f-~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~-- 399 (697)
+ ..+-+-+ ++.-.+|.++.+++.+|||+|.|..+|..-. -.|+..|+||+||+-|..+
T Consensus 469 q-~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~ 529 (875)
T COG4096 469 Q-ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDL 529 (875)
T ss_pred H-HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccc
Confidence 2 2222222 2445789999999999999999998885333 4689999999999999832
Q ss_pred c------EEEEccC---hhHhhhhCCCCCCCcccccchhHHHHHHHHc
Q 005436 400 G------KCYRLYT---EEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (697)
Q Consensus 400 G------~~~~l~~---~~~~~~~~~~~~~pei~~~~l~~~~L~l~~~ 438 (697)
| ..|.+++ .-.|-+ |.....++-.+..++.-++.....
T Consensus 530 ~~~~~dK~~F~ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~~ 576 (875)
T COG4096 530 GGPEQDKEFFTIFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRLF 576 (875)
T ss_pred cCccccceeEEEEEhhhhhhhhc-cCcccccccccchHHHHHhhhhhc
Confidence 2 2344443 333333 455555656666666555444433
No 111
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.76 E-value=3.6e-20 Score=199.33 Aligned_cols=465 Identities=7% Similarity=-0.181 Sum_probs=323.8
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCC---eEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~---~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
+.-+|.....+.|++++..+.+.++.+.|||||+++.|+.+++......+ .-++.+++|...+-....+..-+.++.
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvg 481 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVG 481 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccc
Confidence 34579999999999999999999999999999999999999876543321 127788888888777776666667777
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
++...+|...+......-..-+..+|.+.++..+..+ .......+.||.|++.+++|++..++..+ +++.++
T Consensus 482 vllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~~ 553 (1282)
T KOG0921|consen 482 VLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTVH 553 (1282)
T ss_pred hhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceeec
Confidence 7776777766655443325567788888888776554 34567889999999999999998877653 345899
Q ss_pred cccccHHHHHHHhhcCcCCCCCcccc-----cCCCCCCcEEEeccceeeeE--EEe------------cCCCcchHHHHH
Q 005436 203 SATIEAKSMSAFFHARKGRRGLEGVE-----LVPRLEPAILSVEGRGFNVQ--IHY------------VEEPVSDYVQAA 263 (697)
Q Consensus 203 SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~--~~~------------~~~~~~~~~~~~ 263 (697)
++|.+...|-.++-.++......... ...........-.++.+... -.| .........+..
T Consensus 554 grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal 633 (1282)
T KOG0921|consen 554 GRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEAL 633 (1282)
T ss_pred cccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHH
Confidence 99999988776554333211111000 00000000011001100000 000 001122333333
Q ss_pred HHHHH------HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 264 VSTVL------LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 264 ~~~~~------~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
...+. .+....++...|+|++++.-.......+...- ........+...|..+...+.+.+.+....+.+.
T Consensus 634 ~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~---ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stnia 710 (1282)
T KOG0921|consen 634 LNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE---ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIA 710 (1282)
T ss_pred HhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc---cccchhhcccHhhhhccCccccccccccccccee
Confidence 33222 22234578889999999988877776665431 1122355677889999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCC
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPA 417 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~ 417 (697)
....|...++.+.+.++.+|++++..+.+.+-+..-++.+...|.+.....||.||++|...+.||.+.+...... |..
T Consensus 711 etsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r 789 (1282)
T KOG0921|consen 711 ETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFR 789 (1282)
T ss_pred eEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhc
Confidence 9999999999999999999999999999998888888888888999999999999999999999999999999988 999
Q ss_pred CCCCcccccchhHHHHHHHHcCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHH
Q 005436 418 EGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISK 495 (697)
Q Consensus 418 ~~~pei~~~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~ 495 (697)
.+.+|+.++.....++.++.+-.+.+.-+ +.+.+|+......+.-.+....+.+....++ ++|+.....|+.|..++
T Consensus 790 ~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~-l~iep~~~k~~~lg~~~ 868 (1282)
T KOG0921|consen 790 TPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLAR-LPIEPRIGKMMILGTAL 868 (1282)
T ss_pred CccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhh-ccCcccccceeeechhh
Confidence 99999999887777776665543444434 3455555544443333333333334444567 78999999999999999
Q ss_pred HHHhhcccCChHHHHHHHHHhccccccc
Q 005436 496 MILSSNELGCSEEIITISAVLSIQSIWV 523 (697)
Q Consensus 496 ~l~~~~~~~c~~~~~~i~a~ls~~~~f~ 523 (697)
+.+.++.+-..+....++++-....+|.
T Consensus 869 g~~~~m~~~as~~s~~~~~~~~~~~~~r 896 (1282)
T KOG0921|consen 869 GAGSVMCDVASAMSFPTPFVPREKHHSR 896 (1282)
T ss_pred ccchhhhhhhcccccccccccccccccc
Confidence 8887766555555555555444444444
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4e-17 Score=182.22 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
....+..+..++. .+.++||||.+.+.++.+++.|... ++....+|+.++..++..+.++++.|. |+
T Consensus 435 ~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 435 YQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VT 501 (908)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EE
Confidence 3455556666654 4778999999999999999999876 788889999999999999999999998 99
Q ss_pred EecCccccccCCCC-------------------------------------eEEEEecCcccceeecCCCCccccccccc
Q 005436 340 ISTNIAETSLTLEG-------------------------------------IVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (697)
Q Consensus 340 vaT~i~e~Gvdip~-------------------------------------v~~VId~g~~k~~~yd~~~~~~~l~~~~~ 382 (697)
||||+|++|.||.= =-+||-+.. +-
T Consensus 502 IATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer------------------he 563 (908)
T PRK13107 502 IATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER------------------HE 563 (908)
T ss_pred EecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc------------------Cc
Confidence 99999999999861 113443222 34
Q ss_pred CHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 383 SKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 383 S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
|..-=.|-.|||||. .||.+-.++|
T Consensus 564 SrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 564 SRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred hHHHHhhhhcccccCCCCCceeEEEE
Confidence 444445999999999 8898777766
No 113
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=7.5e-18 Score=143.72 Aligned_cols=91 Identities=38% Similarity=0.740 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccccccccCcchhHHHH--HHH
Q 005436 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELD--EAK 536 (697)
Q Consensus 459 ~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~--~~~ 536 (697)
.|++.|+.+||||+++++| ++|+.|+.||++|++||||+.|..++|.+++++|||+||++++|..+.+.++..+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHH
Confidence 4889999999999999999 8999999999999999999999999999999999999999999999765443322 233
Q ss_pred H---------hhccCCCcHHHHH
Q 005436 537 L---------RFAAAEGDHVTFL 550 (697)
Q Consensus 537 ~---------~~~~~~~D~~~~l 550 (697)
. .+....|||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 3 3467789999986
No 114
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=8.3e-16 Score=171.95 Aligned_cols=120 Identities=22% Similarity=0.239 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcceeE
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEE 126 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~~ 126 (697)
+..+|.+++..+..++.++..++||+||| +.+|.+.... .+..+++++|++.||.| .+...+.+.+|..++..
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL---~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i 169 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL---TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVL 169 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh---hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 88899999999999999999999999999 5566554322 23347889999999988 55566777788888877
Q ss_pred EeeEeecCCcCCCCCceEEEechHHH-HHHHhcCCC-C-------CCCcEEEEeCCC
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-L-------TKYSVIMVDEAH 174 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~~~-l-------~~~~~iIiDE~H 174 (697)
+|.....+..... .++|+|+||+.| ++.+..+.. + +.+.++|||||+
T Consensus 170 ~GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 170 VSGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred eCCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 7743332222223 589999999999 888776633 3 356899999999
No 115
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.71 E-value=1.3e-16 Score=156.03 Aligned_cols=178 Identities=20% Similarity=0.098 Sum_probs=117.6
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc----cCCCeEEEEECcc
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPR 104 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----~~~~~~Ivv~p~r 104 (697)
|++++++...+..+.+... -..+.+|.++++.+.+++++++++|||+|||......+..... ..+.++|+++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~-~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGF-EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCC-CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 3556677766666666332 2368899999999999999999999999999443222222211 2355789999999
Q ss_pred HHHHHHHHH--HHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 005436 105 RLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (697)
Q Consensus 105 ~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (697)
+++.|.... .+....+..+....|.....+. .....+.+|+|+|++.+.+.+..... +.+++++|+||+|... +.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-cc
Confidence 999875433 3333345555555552221111 11112678999999999998876654 8889999999999533 33
Q ss_pred hHHHHHHHHHHHhCCCceEEEecccccH
Q 005436 181 DILLGLLKKIQRCRSDLRLIISSATIEA 208 (697)
Q Consensus 181 d~l~~~l~~~~~~~~~~~ii~~SAT~~~ 208 (697)
.+...+...+.....+.+++++|||++.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 3333333333334568999999999963
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=9.5e-16 Score=174.24 Aligned_cols=292 Identities=15% Similarity=0.128 Sum_probs=156.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc-cccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
.+..+|..+||||||..+..++... ......++|++++.+.|..|.... +.......+ ...+...............
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~-f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKE-FQSLQKDCA-ERIESIAELKRLLEKDDGG 340 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHH-HHhhCCCCC-cccCCHHHHHHHHhCCCCC
Confidence 3579999999999994443332221 122446788999999998876544 333221111 0011000011111122478
Q ss_pred EEEechHHHHHHHhcC--CC-CCCC-cEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccH----HHHHHHh
Q 005436 144 IKFLTDGVLLREMMDD--PL-LTKY-SVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA----KSMSAFF 215 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~--~~-l~~~-~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~----~~~~~~~ 215 (697)
|+|+|.+.+.+.+... .. .... .+||+|||| |+....+ .+.+....++..++++|||+-. ... ..|
T Consensus 341 iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~----~~~l~~~~p~a~~lGfTaTP~~~~d~~t~-~~f 414 (667)
T TIGR00348 341 IIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGEL----AKNLKKALKNASFFGFTGTPIFKKDRDTS-LTF 414 (667)
T ss_pred EEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHH----HHHHHhhCCCCcEEEEeCCCccccccccc-ccc
Confidence 9999999998643221 11 1111 389999999 6654432 2223334577889999999921 111 222
Q ss_pred hc----CcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc------------------------ch---------
Q 005436 216 HA----RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------------------------SD--------- 258 (697)
Q Consensus 216 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------~~--------- 258 (697)
+. ........ +... .| +-+.+.|..... .+
T Consensus 415 ~~~fg~~i~~Y~~~--~AI~---------dG--~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (667)
T TIGR00348 415 AYVFGRYLHRYFIT--DAIR---------DG--LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEK 481 (667)
T ss_pred cCCCCCeEEEeeHH--HHhh---------cC--CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 21 10000000 0000 11 111111111000 00
Q ss_pred ------------HHHHHHHHHHH-HH--hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHH-
Q 005436 259 ------------YVQAAVSTVLL-IH--DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA- 322 (697)
Q Consensus 259 ------------~~~~~~~~~~~-~~--~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~- 322 (697)
........+.. .. ....+++.+|||.++.+|..+++.|.+...... +.....++++...+
T Consensus 482 ~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~ 557 (667)
T TIGR00348 482 LQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDA 557 (667)
T ss_pred HHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchh
Confidence 00111111111 11 112248899999999999999998877643210 22344445443322
Q ss_pred --------------------HHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccc
Q 005436 323 --------------------EQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAP 381 (697)
Q Consensus 323 --------------------~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~ 381 (697)
....+.+.|++ +..+|+|.++++.+|+|.|.+.+++- |. |
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl---------dK----------p 618 (667)
T TIGR00348 558 EIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL---------DK----------P 618 (667)
T ss_pred HHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE---------ec----------c
Confidence 12356667764 68899999999999999999998773 11 3
Q ss_pred cCHHhHHHhhcccCCC-CCc
Q 005436 382 ISKASARQRAGRAGRV-RPG 400 (697)
Q Consensus 382 ~S~~~~~Qr~GRaGR~-~~G 400 (697)
.....++|.+||+.|. .+|
T Consensus 619 lk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 619 LKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ccccHHHHHHHHhccccCCC
Confidence 3444567999999995 443
No 117
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.68 E-value=1.3e-16 Score=151.15 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEECccHHHHHHHHHHHHHHhCC---cceeEEe
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMGV---KVGEEVG 128 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~---~~~~~~g 128 (697)
+.|.++++.+.+++++++.||||+|||+.....+...... ...++++++|+++++.+... ++....+. ++....|
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~-~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFE-RLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHH-HHHHHTTTTTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccc-cccccccccccccccccc
Confidence 6799999999999999999999999997666555443322 23478999999999887554 34444432 3333333
Q ss_pred eEe-e--cCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcC--hhHHHHHHHHHHHhCCCceEEEe
Q 005436 129 YTI-R--FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 129 ~~~-~--~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~--~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
... . ....... ..+|+|+||+.+.+.+.... .+.++++||+||+|..... ...+..+++.+ ....+.++++|
T Consensus 81 ~~~~~~~~~~~~~~-~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~-~~~~~~~~i~~ 158 (169)
T PF00270_consen 81 GQSISEDQREVLSN-QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL-KRFKNIQIILL 158 (169)
T ss_dssp TSCHHHHHHHHHHT-TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-HTTTTSEEEEE
T ss_pred cccccccccccccc-cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh-cCCCCCcEEEE
Confidence 111 0 0001112 68999999999999887643 3566999999999954442 11222222222 22347899999
Q ss_pred cccccHHHHH
Q 005436 203 SATIEAKSMS 212 (697)
Q Consensus 203 SAT~~~~~~~ 212 (697)
|||++ ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5554
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=1.2e-15 Score=157.94 Aligned_cols=276 Identities=23% Similarity=0.252 Sum_probs=175.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+.+.++-+|||.||||+-+.+-+.+. ...++|-|.|-||.+ +.++ ....|+.+...+|-..++...... .+.
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~E-V~~r-~na~gipCdL~TGeE~~~~~~~~~-~a~ 261 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHE-VYDR-LNALGIPCDLLTGEERRFVLDNGN-PAQ 261 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHH-HHHH-hhhcCCCccccccceeeecCCCCC-ccc
Confidence 34557779999999998777766554 234899988877664 4444 456788888888866665444333 567
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCC-----cCC-cChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ERS-ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~H-----er~-~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
.+=||.++.- .-..|++.||||++ .|+ .++..++++...-...+.+ -|-++ .+.+....
T Consensus 262 hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe------psvld--lV~~i~k~ 326 (700)
T KOG0953|consen 262 HVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE------PSVLD--LVRKILKM 326 (700)
T ss_pred ceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC------chHHH--HHHHHHhh
Confidence 7778887643 23568999999999 233 2233444444433333222 22221 12222221
Q ss_pred CcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 005436 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (697)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (697)
.|... +++..+....-.+.. .+..-..+-.+|+++|- -++++|-.+...+.
T Consensus 327 -----------------------TGd~v--ev~~YeRl~pL~v~~---~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE 377 (700)
T KOG0953|consen 327 -----------------------TGDDV--EVREYERLSPLVVEE---TALGSLSNLKPGDCVVA-FSKKDIFTVKKKIE 377 (700)
T ss_pred -----------------------cCCee--EEEeecccCcceehh---hhhhhhccCCCCCeEEE-eehhhHHHHHHHHH
Confidence 12221 222111111100011 11222233355666553 36788999998888
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC--CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcc
Q 005436 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIE 375 (697)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~--g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~ 375 (697)
+.. +..+.++||++|++.|..--..|.+ ++.+|+|||+..++|+|+. |+-||.+.+.| |+.
T Consensus 378 ~~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ysg----- 440 (700)
T KOG0953|consen 378 KAG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YSG----- 440 (700)
T ss_pred Hhc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CCc-----
Confidence 762 5669999999999998877777765 8999999999999999998 77788766644 442
Q ss_pred cccccccCHHhHHHhhcccCCC----CCcEEEEccChh
Q 005436 376 NLVVAPISKASARQRAGRAGRV----RPGKCYRLYTEE 409 (697)
Q Consensus 376 ~l~~~~~S~~~~~Qr~GRaGR~----~~G~~~~l~~~~ 409 (697)
-.+.+++.++..|-+|||||. ..|.+-.|..++
T Consensus 441 -~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 441 -RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred -ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 224489999999999999998 457888887765
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.1e-14 Score=150.61 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
++..+..+.... ..+.++||-+-|++.++.+.++|.+. ++.+..+||++..-||.+++..++.|...||
T Consensus 432 vdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvL 500 (663)
T COG0556 432 VDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (663)
T ss_pred HHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEE
Confidence 333444443333 34578999999999999999999887 9999999999999999999999999999999
Q ss_pred EecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccCh
Q 005436 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTE 408 (697)
Q Consensus 340 vaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~ 408 (697)
|.-|.+-+|+|+|.|..|...+-.|.-+ .-|..+.+|-+|||.|...|+++...++
T Consensus 501 VGINLLREGLDiPEVsLVAIlDADKeGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD~ 556 (663)
T COG0556 501 VGINLLREGLDLPEVSLVAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYADK 556 (663)
T ss_pred EeehhhhccCCCcceeEEEEeecCcccc-------------ccccchHHHHHHHHhhccCCeEEEEchh
Confidence 9999999999999999987543322222 3466788899999999999998866553
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=1.2e-13 Score=162.19 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (697)
.++.+.....+..+... .+|++|||+++.+..+.+++.|..... ..+..+.. .+.. ..|.++++.|++|+.
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 34566666666666554 457899999999999999999875321 01333332 2322 467888999999999
Q ss_pred EEEEecCccccccCCCCeE--EEEecCcccceeecC-------------CCCcccccccccCHHhHHHhhcccCCC--CC
Q 005436 337 KVVISTNIAETSLTLEGIV--YVVDSGFSKQRFYNP-------------ISDIENLVVAPISKASARQRAGRAGRV--RP 399 (697)
Q Consensus 337 kilvaT~i~e~Gvdip~v~--~VId~g~~k~~~yd~-------------~~~~~~l~~~~~S~~~~~Qr~GRaGR~--~~ 399 (697)
.||++|+.+.+|||+|+.. .||-.|++-..--|| ...+..+ ..|.....+.|-+||.=|. ..
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~-~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY-VLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh-hHHHHHHHHHHhhccccccCCce
Confidence 9999999999999999866 566666532111111 0111111 1144567789999999998 44
Q ss_pred cEEEEc
Q 005436 400 GKCYRL 405 (697)
Q Consensus 400 G~~~~l 405 (697)
|..+.+
T Consensus 806 G~v~il 811 (850)
T TIGR01407 806 GSIVIL 811 (850)
T ss_pred EEEEEE
Confidence 655544
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.1e-13 Score=153.21 Aligned_cols=276 Identities=22% Similarity=0.224 Sum_probs=176.5
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHH--HHHHHhCCccee
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVGE 125 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~~~~~ 125 (697)
..+.+..|......+..|+..-+.||||.||||....+.+-.+ ..++++.+++||+.|+.|...+ .++...+ ....
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~-~~~~ 157 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKKFAEDAG-SLDV 157 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHHHHhhcC-Ccce
Confidence 4588999999999999999999999999999966554433322 2457889999999998875443 2333333 2222
Q ss_pred EEeeEeecCC--------cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCC---cCCcChhHHHHHH-------
Q 005436 126 EVGYTIRFED--------FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH---ERSISTDILLGLL------- 187 (697)
Q Consensus 126 ~~g~~~~~~~--------~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~H---er~~~~d~l~~~l------- 187 (697)
...|+..... ....++.+|+|+|.+.|...+..-.. -++++|++|+++ ..+-+.|-++.++
T Consensus 158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i 236 (1187)
T COG1110 158 LVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVI 236 (1187)
T ss_pred eeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHH
Confidence 2224433211 11223789999999988776543211 368999999999 1222333222111
Q ss_pred ---------HH-H---------------------HHhCCCceEEEecccccH-----HHHHHHhhcCcCCCCCcccccCC
Q 005436 188 ---------KK-I---------------------QRCRSDLRLIISSATIEA-----KSMSAFFHARKGRRGLEGVELVP 231 (697)
Q Consensus 188 ---------~~-~---------------------~~~~~~~~ii~~SAT~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 231 (697)
+. + ......-.+|++|||..+ ..|.+.++-.....
T Consensus 237 ~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~--------- 307 (1187)
T COG1110 237 ESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSG--------- 307 (1187)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCcc---------
Confidence 00 0 011244679999999833 33455554222100
Q ss_pred CCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCC---HHHHHHHHHHHHHHhhhccCCCC
Q 005436 232 RLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTG---QDDIDATIQLLTEEARTSKKNSS 308 (697)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~---~~~~~~l~~~L~~~~~~~~~~~~ 308 (697)
.....++.-.|... +..+.....+ +.. +...|||++. ++.++++++.|...
T Consensus 308 ---------~~~LRNIvD~y~~~---~~~e~~~elv----k~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~--------- 361 (1187)
T COG1110 308 ---------GEGLRNIVDIYVES---ESLEKVVELV----KKL-GDGGLIFVPIDYGREKAEELAEYLRSH--------- 361 (1187)
T ss_pred ---------chhhhheeeeeccC---ccHHHHHHHH----HHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc---------
Confidence 00112222333333 2222222222 222 3358999998 88899999999876
Q ss_pred CeEEEEecCCCCHHHHhhccCCCCCCCcEEEEec----CccccccCCCC-eEEEEecCcccce
Q 005436 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQR 366 (697)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT----~i~e~Gvdip~-v~~VId~g~~k~~ 366 (697)
++++..+|+. ..+.++.|..|+++++|++ +++-+|+|+|. ++|+|.+|.+|.+
T Consensus 362 Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 362 GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8999999984 3678999999999999987 48999999995 8899999998654
No 122
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.62 E-value=9.3e-16 Score=128.90 Aligned_cols=90 Identities=50% Similarity=0.847 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhccc-CChHHHHHHHHHhccccccccCcchhHHHHHHHH
Q 005436 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNEL-GCSEEIITISAVLSIQSIWVSGRGAQKELDEAKL 537 (697)
Q Consensus 459 ~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~-~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~ 537 (697)
.|++.|+.+||||++|++| ++|+.|+.||++|++|||++.+..+ +|.+++++|+|++++.++|..+ ......+..+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHH
Confidence 3789999999999999999 8999999999999999999999999 8999999999999999988766 44455666778
Q ss_pred hhccC-CCcHHHHH
Q 005436 538 RFAAA-EGDHVTFL 550 (697)
Q Consensus 538 ~~~~~-~~D~~~~l 550 (697)
.|... .|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88888 79999863
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=3.2e-15 Score=152.46 Aligned_cols=310 Identities=15% Similarity=0.144 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 51 VYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 51 i~~~q~~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
+.+||+.-+..+..| +.-||+.|.|+|||.. -. .+...-++..+|..+.++...++...+.....+......
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLV-Gv----TAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLV-GV----TAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCcee-ee----eeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 778999999988766 4578999999999922 11 111111222445556677777777777776666554544
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHH---------hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREM---------MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l---------~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
-++......... ++.|+|+|..++..-- +.--.-..++++|+||+| .+....+..++..+...+
T Consensus 378 rFTsd~Ke~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc---- 450 (776)
T KOG1123|consen 378 RFTSDAKERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC---- 450 (776)
T ss_pred EeeccccccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh----
Confidence 454443333333 6889999987764211 000013578999999999 333334444444444333
Q ss_pred EEEecccc--cHHHHHHH-hhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc---chHH------------
Q 005436 199 LIISSATI--EAKSMSAF-FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV---SDYV------------ 260 (697)
Q Consensus 199 ii~~SAT~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~------------ 260 (697)
-++++||+ ..+.+.++ |--.|...+....++........+.. -..|.+... .+|+
T Consensus 451 KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqC-------aEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 451 KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQC-------AEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEee-------eeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 47999998 22223221 11111111111111110000001110 011111111 1111
Q ss_pred -----HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC-C
Q 005436 261 -----QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR-G 334 (697)
Q Consensus 261 -----~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g 334 (697)
-.+..-+...|.. .+.+||||..+.-...+.+-.|. --+++|..++.||.+|++.|+. .
T Consensus 524 MNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~--------------KpfIYG~Tsq~ERm~ILqnFq~n~ 588 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQNERMKILQNFQTNP 588 (776)
T ss_pred cCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC--------------CceEECCCchhHHHHHHHhcccCC
Confidence 1233444555555 67789999988766555544432 2357899999999999999984 4
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCc-------EEEEccC
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-------KCYRLYT 407 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G-------~~~~l~~ 407 (697)
.++-|+-+-+..+++|+|..+++|.-. ..--|+.+-.||.||.-|++.+ ..|.|++
T Consensus 589 ~vNTIFlSKVgDtSiDLPEAnvLIQIS-----------------SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 589 KVNTIFLSKVGDTSIDLPEANVLIQIS-----------------SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred ccceEEEeeccCccccCCcccEEEEEc-----------------ccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 788999999999999999999999621 1245677778999999988332 5677777
Q ss_pred hhHh
Q 005436 408 EEYF 411 (697)
Q Consensus 408 ~~~~ 411 (697)
+++.
T Consensus 652 ~DTq 655 (776)
T KOG1123|consen 652 KDTQ 655 (776)
T ss_pred cchH
Confidence 6543
No 124
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=2.8e-15 Score=154.75 Aligned_cols=318 Identities=12% Similarity=0.066 Sum_probs=200.2
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH-hc-cccCCCeEEEEECccHHHHHHHHHH-----HHHHhCCc
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-EA-GWADGGRVIACTQPRRLAVQAVASR-----VAEEMGVK 122 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~-~~-~~~~~~~~Ivv~p~r~l~~~~~~~~-----~~~~~~~~ 122 (697)
.-+++|.+++..+.+++++++.-.|.+||++. |+... .. ........+++.|+.+++..+-... +-.++...
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~-~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A 364 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTC-PTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSA 364 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccC-cccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcc
Confidence 46788999999999999999999999999932 22211 11 1112334578888888765421110 00111110
Q ss_pred -ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC-----CCCCCcEEEEeCCCcCCcCh-hHHHHHHHHHHH---
Q 005436 123 -VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAHERSIST-DILLGLLKKIQR--- 192 (697)
Q Consensus 123 -~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-----~l~~~~~iIiDE~Her~~~~-d~l~~~l~~~~~--- 192 (697)
+...-|....-+......+.+++|..+.........+. .+-...++++||+|-...-+ ......++++..
T Consensus 365 ~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~ 444 (1034)
T KOG4150|consen 365 YVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIK 444 (1034)
T ss_pred eeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHH
Confidence 00000100000011111267899999988766554332 13445789999999443222 222233333332
Q ss_pred ---hCCCceEEEecccc--cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEE--EecCCC-------cch
Q 005436 193 ---CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI--HYVEEP-------VSD 258 (697)
Q Consensus 193 ---~~~~~~ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~-------~~~ 258 (697)
...+++++-.|||+ +.....+.++-.. ...+...|.+..-+. .|.+.. .++
T Consensus 445 ~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E---------------~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 445 GFEASINMGVYDGDTPYKDRTRLRSELANLSE---------------LELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHhhcCcceEeCCCCcCCHHHHHHHhcCCcc---------------eEEEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 34689999999999 4455556665332 125666665543332 222221 122
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEE
Q 005436 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (697)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ki 338 (697)
.+.+....+..+.. .+-+++.||+.++-++-+....++.+.+.+.+ .-..+..+.||-..++|+++....=.|+.+-
T Consensus 510 ~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~-LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPH-LVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred HHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 33333344444443 35569999999999998887777665433221 1123667889999999999999888899999
Q ss_pred EEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEE
Q 005436 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (697)
Q Consensus 339 lvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~ 404 (697)
|+|||.+|-||||.+.+.|+..|+ |.|.++++|..|||||. .+..+..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLavy 635 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLAVY 635 (1034)
T ss_pred EEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceEEE
Confidence 999999999999999999999999 99999999999999999 5654433
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=9.6e-15 Score=164.08 Aligned_cols=114 Identities=20% Similarity=0.143 Sum_probs=100.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~ 353 (697)
..+.++||||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|+.|+..|+|||+++++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 34678999999999999999999876 788999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChh
Q 005436 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (697)
Q Consensus 354 v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~ 409 (697)
+++||.++- .. ...|.|..+|+||+|||||..+|+++.+++..
T Consensus 511 v~lVvi~Da--------di-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 511 VSLVAILDA--------DK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred CcEEEEeCc--------cc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999997542 11 01166888999999999999999999988854
No 126
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.57 E-value=1.5e-13 Score=159.28 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=90.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC---CCcEEEEecCccccccCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---g~~kilvaT~i~e~Gvdi 351 (697)
.+.++|||+........+.+.|... ++....+||+++.++|..+++.|.+ +..-+|++|.+++.|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4568999998887777777776543 7788899999999999999999964 235678999999999999
Q ss_pred CCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhh
Q 005436 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFV 412 (697)
Q Consensus 352 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~ 412 (697)
...++||.++. +-+.+...|+.||+-|. ++=.+|+|+++...+
T Consensus 557 t~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 557 ATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred hhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 99999998554 56677777999999998 334688998876543
No 127
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.53 E-value=4e-14 Score=127.75 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=94.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.++++||||++...++.+++.|.+. +..+..+||+++..+|..+++.|.+|..+|+++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 5788999999999999999999763 6789999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEc
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l 405 (697)
++||..+. +.+...+.|++||+||. ..|.|+.+
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 99997655 77888999999999999 57887653
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1.5e-12 Score=142.50 Aligned_cols=118 Identities=20% Similarity=0.205 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEE
Q 005436 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (697)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ki 338 (697)
.....+..+...+. .+.+|||.+.+.+..+.+++.|.+. ++....+++.-...|-..|-++-+. -.|
T Consensus 412 k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~--gaV 478 (764)
T PRK12326 412 KNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKY--GAV 478 (764)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCC--CcE
Confidence 34445555555554 5778999999999999999999876 6666777776554443344444333 358
Q ss_pred EEecCccccccCCCC---------------eEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEE
Q 005436 339 VISTNIAETSLTLEG---------------IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (697)
Q Consensus 339 lvaT~i~e~Gvdip~---------------v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~ 402 (697)
.||||+|++|.||.= =-+||-+.. +-|..-=.|-.|||||. .||.+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCce
Confidence 999999999999861 124554333 45566666999999999 88987
Q ss_pred EEccC
Q 005436 403 YRLYT 407 (697)
Q Consensus 403 ~~l~~ 407 (697)
-.+.|
T Consensus 541 ~f~lS 545 (764)
T PRK12326 541 VFFVS 545 (764)
T ss_pred eEEEE
Confidence 77776
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.51 E-value=1.1e-11 Score=143.65 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-CCCHHHHhhccCCCCCCC
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS-GLSRAEQEQVFSPTPRGK 335 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~v~~~f~~g~ 335 (697)
.+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++++.|++++
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 456666666666655 35789999999999999999888542 2233 2333 232 345677888888
Q ss_pred cEEEEecCccccccCCC--CeEEEEecCcccceeecCC----------CCccccc--ccccCHHhHHHhhcccCCC--CC
Q 005436 336 RKVVISTNIAETSLTLE--GIVYVVDSGFSKQRFYNPI----------SDIENLV--VAPISKASARQRAGRAGRV--RP 399 (697)
Q Consensus 336 ~kilvaT~i~e~Gvdip--~v~~VId~g~~k~~~yd~~----------~~~~~l~--~~~~S~~~~~Qr~GRaGR~--~~ 399 (697)
..||++|+.+.+|||+| +...||-.+++-..--||- .|-+.+. ..|.....+.|-+||.=|. ..
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 89999999999999997 3455555555322111110 1111111 1244567799999999999 45
Q ss_pred cEEEEc
Q 005436 400 GKCYRL 405 (697)
Q Consensus 400 G~~~~l 405 (697)
|.++.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 765544
No 130
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=3.7e-14 Score=115.27 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=68.3
Q ss_pred CeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHH
Q 005436 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (697)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~ 388 (697)
++.+..+||++++++|..+++.|.+|..+|||||+++++|+|+|++++||.++. +.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999777 88999999
Q ss_pred HhhcccCCC
Q 005436 389 QRAGRAGRV 397 (697)
Q Consensus 389 Qr~GRaGR~ 397 (697)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999995
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.46 E-value=1.1e-12 Score=147.13 Aligned_cols=319 Identities=18% Similarity=0.175 Sum_probs=198.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH---HHHHhCCcceeEEeeEeecCCcCCC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGEEVGYTIRFEDFTNK 139 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~ 139 (697)
..+++++|.+|+|||||.....+++. ....+++++++|.-.++...+..+ +....|..+....|... .+-+...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s-~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETS-LDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccc-cchHHhh
Confidence 46789999999999999777766665 334567899999998887755443 33334444444444221 1222223
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc-Ch---hHHHHHHHHHHHhCCCceEEEecccc-cHHHHHHH
Q 005436 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-ST---DILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAF 214 (697)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~-~~---d~l~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~ 214 (697)
..+|+++||+.+-.. + ..+.+++.|.||.|..+- .. ..+..........-+++|++.+|..+ |+.++
T Consensus 1234 -~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~--- 1305 (1674)
T KOG0951|consen 1234 -KGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL--- 1305 (1674)
T ss_pred -hcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---
Confidence 689999999987654 2 467899999999995441 11 12222222223345688999999888 77666
Q ss_pred hhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHH-------HHHHHHHHHhcCCCCcEEEEcCCHH
Q 005436 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA-------AVSTVLLIHDKEPPGDILVFLTGQD 287 (697)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (697)
++..... ..-+....|..|.+++........+... ....+... ...+.+.+||+|+++
T Consensus 1306 ig~s~~~-------------v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1306 IGASSSG-------------VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVFLPTRK 1370 (1674)
T ss_pred ccccccc-------------eeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEEeccch
Confidence 2222110 0022233445555554443332222111 11122221 135678999999999
Q ss_pred HHHHHHHHHHHHhhh---------------ccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC
Q 005436 288 DIDATIQLLTEEART---------------SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (697)
Q Consensus 288 ~~~~l~~~L~~~~~~---------------~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip 352 (697)
++..++..+-..... .........|. |-+|+..++..+-..|..|.+.|+|...- -.|+-..
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~ 1447 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK 1447 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc
Confidence 998877555332110 11122233444 89999999999999999999999988876 7787766
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccC---hhHhhhhCCCCCCC
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT---EEYFVKEIPAEGIP 421 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~---~~~~~~~~~~~~~p 421 (697)
.--+|+ . ....||...+. +. +.+.+...|+.|+|.| .|+|+.+.. ++.|.+ +...+.|
T Consensus 1448 ~~lVvv-m---gt~~ydg~e~~--~~--~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykk-fl~e~lP 1508 (1674)
T KOG0951|consen 1448 AHLVVV-M---GTQYYDGKEHS--YE--DYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKK-FLYEPLP 1508 (1674)
T ss_pred ceEEEE-e---cceeecccccc--cc--cCchhHHHHHhhhhcC--CccEEEEecCchHHHHHH-hccCcCc
Confidence 444444 2 34568876643 22 7788999999999999 678887765 334444 5555555
No 132
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=8.7e-13 Score=148.41 Aligned_cols=120 Identities=23% Similarity=0.225 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEE
Q 005436 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (697)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilv 340 (697)
...+..+...+ ..+.++||||+|++.++.+++.|... ++....+|+ .+.+|+..+..|..+...|+|
T Consensus 585 ~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 585 NAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred HHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 33444444433 35788999999999999999999876 777888997 577888889999999999999
Q ss_pred ecCccccccCCC---CeEE-----EEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 341 STNIAETSLTLE---GIVY-----VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 341 aT~i~e~Gvdip---~v~~-----VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
|||+|++|+||+ +|.. ||.+.. +.|...+.||.||+||. .||.+..+++.++.
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999 5533 355433 77888899999999999 89999999996543
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=3.4e-12 Score=143.30 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHH--HHHHHHHHhCCcceeEEeeEeecC
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFE 134 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~--~~~~~~~~~~~~~~~~~g~~~~~~ 134 (697)
+++-.+.=++--|....||+|||..+...++.... .+..+-+++|+--||.+. ....+.+.+|+.++...+.....+
T Consensus 87 QliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~e 165 (913)
T PRK13103 87 QLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEE 165 (913)
T ss_pred HHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHH
Confidence 34444443444588999999999443322222222 456688899999888873 334455667888776665433222
Q ss_pred CcCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCC
Q 005436 135 DFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAH 174 (697)
Q Consensus 135 ~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDE~H 174 (697)
....- ..+|+|+|...+ .+.|+.+ .....+.++||||+|
T Consensus 166 rr~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 166 KRAAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred HHHHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 22233 589999999876 2222222 125889999999999
No 134
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.43 E-value=1.7e-11 Score=138.85 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=71.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC--------------------------C
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT--------------------------P 332 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f--------------------------~ 332 (697)
.||=+++++.+..+++.|...... ....+.+..+||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 477888899999999888766422 22457788999999777776654321 1
Q ss_pred CCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCC
Q 005436 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (697)
Q Consensus 333 ~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~ 399 (697)
.+...|+|||++.|.|+|+.- +.+| +.+.+..+.+||+||..|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~df-d~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHDY-DWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEecccC-Ceee--------------------eccCcHHHHHHHhhccccccc
Confidence 257799999999999999873 2332 236788889999999999843
No 135
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.43 E-value=1.8e-12 Score=113.91 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=87.3
Q ss_pred hcCCEEEEEcCCCChHHH-HHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 63 ETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~-~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
.+++..+|...+|+|||. .+|.++.+. ...+.+++++.|+|.++.. +.+ .++... +.+..........+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~e-m~~----aL~~~~---~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEE-MYE----ALKGLP---VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHH-HHH----HTTTSS---EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHH-HHH----HHhcCC---cccCceeeeccccCC
Confidence 457788999999999996 577777655 5567889999999988653 333 332211 223322221222236
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
.-|.++|.+.+.+.+.+...+.+|++||+||||--+..+-...+.++..... ...++|+||||++..
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT-
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCCC
Confidence 7899999999998887755589999999999996555555566666666444 457899999998653
No 136
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.42 E-value=7e-13 Score=150.34 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.+.+++|||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|+.|+..|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4678999999999999999999765 7899999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccCh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTE 408 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~ 408 (697)
++||.++.... | .|.+..+|+||+||+||...|.|+.+++.
T Consensus 516 ~lVii~d~eif-------G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCCccc-------c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99998543110 1 15678899999999999999999999884
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=6.2e-12 Score=121.92 Aligned_cols=156 Identities=25% Similarity=0.176 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhccccC-CCeEEEEECccHHHHHHHHHHHHHHhCCcc---
Q 005436 49 LPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVKV--- 123 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~-~~~ii~apTGsGKT~~lp~~l~~~~~~~-~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~--- 123 (697)
.+..++|.+++..+.+. +++++.+|||+|||+.+..++.+..... ..++++++|++.++.+. .+++........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~~~~~~~~ 85 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQW-AEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHH-HHHHHHHhccCCeEE
Confidence 45788999999999888 9999999999999986666665543322 35688999988888864 444444443211
Q ss_pred eeEE-eeEee-cCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEE
Q 005436 124 GEEV-GYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (697)
Q Consensus 124 ~~~~-g~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii 200 (697)
.... +.... ..........+++++|++.+.+.+.... ....++++|+||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 1111 11100 0001122133999999999999887755 3778899999999954421 12222222222234678899
Q ss_pred Eecccc
Q 005436 201 ISSATI 206 (697)
Q Consensus 201 ~~SAT~ 206 (697)
++|||+
T Consensus 165 ~~saT~ 170 (201)
T smart00487 165 LLSATP 170 (201)
T ss_pred EEecCC
Confidence 999999
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=8.1e-11 Score=139.00 Aligned_cols=141 Identities=17% Similarity=0.253 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (697)
..|.......+..+... .+|++|||+++.+..+.+++.|..... ..++.+.. . +++...|.++++.|+.++.
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 35556666666666543 567899999999999999999976421 01222222 2 3333456778888888888
Q ss_pred EEEEecCccccccCCCC--eEEEEecCcccceeecC----------CCCccccc--ccccCHHhHHHhhcccCCC--CCc
Q 005436 337 KVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNP----------ISDIENLV--VAPISKASARQRAGRAGRV--RPG 400 (697)
Q Consensus 337 kilvaT~i~e~Gvdip~--v~~VId~g~~k~~~yd~----------~~~~~~l~--~~~~S~~~~~Qr~GRaGR~--~~G 400 (697)
.||++|..+.+|||+|+ .++||-.+++-..--|| ..|-+.+. ..|.....+.|-+||.=|. ..|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 99999999999999997 47787766542100010 01111111 1145567789999999998 456
Q ss_pred EEEEc
Q 005436 401 KCYRL 405 (697)
Q Consensus 401 ~~~~l 405 (697)
.++.+
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 65543
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=3.1e-11 Score=134.22 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
....+..+...+. .+.++||.|.+.+..+.+++.|.+. ++....+++.-...|-..|-++-+ .-.|.
T Consensus 412 ~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~--~GaVT 478 (925)
T PRK12903 412 WKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQ--KGAIT 478 (925)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCC--CCeEE
Confidence 3445555555554 5778999999999999999999875 566666777644444444433322 35699
Q ss_pred EecCccccccCCCCeE--------EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 340 ISTNIAETSLTLEGIV--------YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 340 vaT~i~e~Gvdip~v~--------~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
||||+|++|.||.--. +||-+.. +-|..-=.|-.||+||. .||.+-.+.|
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEe
Confidence 9999999999996322 6665433 33444445999999999 8897665555
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.39 E-value=6.2e-12 Score=114.56 Aligned_cols=138 Identities=32% Similarity=0.322 Sum_probs=86.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEECccHHHHHHHHHHHHHHhC--CcceeEEeeEeecCC--cCCCC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYTIRFED--FTNKD 140 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~p~r~l~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~--~~~~~ 140 (697)
+++++.+|||+|||+++..++...... ..+++++++|.+.+..+. .+.+..... ..+....+....... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQV-AERLKELFGEGIKVGYLIGGTSIKQQEKLLSG- 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHH-HHHHHHHhhCCcEEEEEecCcchhHHHHHhcC-
Confidence 358999999999997777666554332 345678888887776654 344444443 333333332111110 0123
Q ss_pred CceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
..+|+++|++.+.+.+..... ...+++||+||+|...... ................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888766543 6678999999999433222 2111122333345678899999996
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.36 E-value=3.1e-11 Score=135.02 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=74.9
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcceeEEeeEee
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIR 132 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~--lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~~~g~~~~ 132 (697)
+++-++.-++--|....||.|||.. +|.++... .+..+-+||+...||.+ .+...+.+.+|+.+|...+....
T Consensus 81 Qlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~ 157 (870)
T CHL00122 81 QLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSS 157 (870)
T ss_pred HhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCCh
Confidence 3444444455679999999999933 34443322 45668889999999987 45556788889888766553222
Q ss_pred cCCcCCCCCceEEEechHH-----HHHHHhcCC---CCCCCcEEEEeCCC
Q 005436 133 FEDFTNKDLTAIKFLTDGV-----LLREMMDDP---LLTKYSVIMVDEAH 174 (697)
Q Consensus 133 ~~~~~~~~~~~I~v~T~~~-----Ll~~l~~~~---~l~~~~~iIiDE~H 174 (697)
.+....- .++|+|+|... |.+.+...+ ..+.+.+.|||||+
T Consensus 158 ~err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 158 EERKKNY-LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred HHHHHhc-CCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 2222233 67999999853 444332221 25778899999998
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.34 E-value=2.9e-11 Score=135.73 Aligned_cols=139 Identities=6% Similarity=0.054 Sum_probs=87.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC-CcceeEEeeEee---cCC--cCCCCC
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIR---FED--FTNKDL 141 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~-~~~~~~~g~~~~---~~~--~~~~~~ 141 (697)
.+..+.+|||||.....++... +..++++|+++|..++..| +.+++...++ ..+...++.... .+. ....+.
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q-~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDR-LEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHH-HHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 3445557999996555555433 3456789999999999775 5556677776 555555442211 111 122336
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhH----HHHHHHHHHHhCCCceEEEecccccHHHHHHH
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI----LLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~----l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~ 214 (697)
.+|+|+|-..++-- +.++++|||||-|+-+...+- -.--+...+....+..+|+.|||+..+.+...
T Consensus 241 ~~IViGtRSAvFaP------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 241 ARVVVGTRSAVFAP------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CcEEEEcceeEEec------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 89999998765421 788999999999954432221 00011122234467889999999988877653
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.33 E-value=1.5e-11 Score=117.86 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=89.6
Q ss_pred CCcHHHHHHHHHHHhc-------CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCC
Q 005436 49 LPVYKYRTAILYLVET-------HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~-------~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~ 121 (697)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++..... ++++++|...|..|.... +......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~-~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDE-FDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHH-HHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHH-HHHhhhh
Confidence 3578899998888873 689999999999999666655554432 789999998888765544 3222211
Q ss_pred cceeEEe----------------eEeecCCcCCCCCceEEEechHHHHHHHhcCC------------CCCCCcEEEEeCC
Q 005436 122 KVGEEVG----------------YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP------------LLTKYSVIMVDEA 173 (697)
Q Consensus 122 ~~~~~~g----------------~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~------------~l~~~~~iIiDE~ 173 (697)
.. ...+ ..............++.+.|.+.+........ ....+++||+|||
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 KY-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp SE-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hh-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 11 1110 00001011112267899999999987654311 2456799999999
Q ss_pred CcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
|+.. .... .+.+.. .+...+|+||||+.
T Consensus 156 H~~~-~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYP-SDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp GCTH-HHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred hhcC-CHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 9432 2221 222222 56778999999974
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.29 E-value=1.3e-10 Score=125.12 Aligned_cols=329 Identities=21% Similarity=0.225 Sum_probs=188.0
Q ss_pred CcHHHHHHH----HHHHhcCCEEEEEcCCCChHHHHHHHHHH-hcc-ccCCCeEEEEECccHHHHHHHHHHHHHHh-CCc
Q 005436 50 PVYKYRTAI----LYLVETHATTIIVGETGSGKTTQIPQYLK-EAG-WADGGRVIACTQPRRLAVQAVASRVAEEM-GVK 122 (697)
Q Consensus 50 Pi~~~q~~i----~~~l~~~~~~ii~apTGsGKT~~lp~~l~-~~~-~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~-~~~ 122 (697)
.+..||-+= +....++-+.|+.-.-|-|||.|.-.++. ... ....++.+|++|..-|. .+...+++.. +.+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~--NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD--NWMNEFKRFTPSLN 244 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH--HHHHHHHHhCCCcc
Confidence 455666543 44446777899999999999955333222 111 22346678888876553 4444455543 566
Q ss_pred ceeEEeeEeec----CCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHH-HHHHHHHHHhCCC
Q 005436 123 VGEEVGYTIRF----EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDIL-LGLLKKIQRCRSD 196 (697)
Q Consensus 123 ~~~~~g~~~~~----~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l-~~~l~~~~~~~~~ 196 (697)
+...+|..... .+.......+|+++|.++.++.- +.+ --++.++||||+| |.-+.... ...++.+ . -
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f---~-~ 317 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAH-RIKNEKSKLSKILREF---K-T 317 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhh-hhcchhhHHHHHHHHh---c-c
Confidence 66777733111 11122226899999999988651 111 2357899999999 66555433 3333332 2 2
Q ss_pred ceEEEecccc---------------------cHHHHHHHhhcCcCCCCCcc-------------------c--ccCCCCC
Q 005436 197 LRLIISSATI---------------------EAKSMSAFFHARKGRRGLEG-------------------V--ELVPRLE 234 (697)
Q Consensus 197 ~~ii~~SAT~---------------------~~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~~~ 234 (697)
..-+++|.|+ +.+.|.+||........... + .+.+...
T Consensus 318 ~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 318 DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 2356778885 22567777765422211110 0 0011000
Q ss_pred CcEEEeccce-----ee------eEE-------------------------EecC---CCcchH------HH-----HHH
Q 005436 235 PAILSVEGRG-----FN------VQI-------------------------HYVE---EPVSDY------VQ-----AAV 264 (697)
Q Consensus 235 ~~~~~~~~~~-----~~------v~~-------------------------~~~~---~~~~~~------~~-----~~~ 264 (697)
. .+.+.-.. |. +.. -|+- ++...| +. ..+
T Consensus 398 ~-~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 398 L-IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred e-eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehH
Confidence 0 00000000 00 000 0000 000000 00 001
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC---CcEEEEe
Q 005436 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG---KRKVVIS 341 (697)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g---~~kilva 341 (697)
+.++.- ....+.++|||..-.... +.|.+.+ ...++....+.|+++.++|...++.|... +.-.+++
T Consensus 477 DkLL~~-Lk~~GhRVLIFSQmt~mL----DILeDyc-----~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 477 DKLLPK-LKEQGHRVLIFSQMTRML----DILEDYC-----MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HHHHHH-HHhCCCeEEEeHHHHHHH----HHHHHHH-----HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 111111 123567899996544333 3333332 12378899999999999999999998643 4567899
Q ss_pred cCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 342 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 342 T~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
|-..+-|||+-..++||- ||..-+ |..--++.+|+-|.|-..+=.+|||+++...+.
T Consensus 547 TRAGGLGINL~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccccccccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999999999996 554443 666677889999999999999999999765543
No 145
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=2.9e-12 Score=104.98 Aligned_cols=71 Identities=41% Similarity=0.599 Sum_probs=67.3
Q ss_pred CeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHH
Q 005436 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (697)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~ 388 (697)
++.+..+||++++++|..+++.|++|..+|+++|+++++|+|+|+++.||..+. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999998766 78899999
Q ss_pred HhhcccCCC
Q 005436 389 QRAGRAGRV 397 (697)
Q Consensus 389 Qr~GRaGR~ 397 (697)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=6.1e-10 Score=124.61 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=80.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcce
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~ 124 (697)
+.|-+..+--+++-++.=++--|....||-|||..+...++..++ .|..+-+||...-||.. .+...+.+.+|..+|
T Consensus 80 R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg 158 (939)
T PRK12902 80 RVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVG 158 (939)
T ss_pred HHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEE
Confidence 344444444445555554555699999999999433322222222 45567889999888877 455567788898887
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHH-----HHHHhcCC---CCCCCcEEEEeCCC
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDDP---LLTKYSVIMVDEAH 174 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~L-----l~~l~~~~---~l~~~~~iIiDE~H 174 (697)
...+.....+....- .++|+|+|...+ .+.+.... ..+.+.+.|||||+
T Consensus 159 ~i~~~~~~~err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 159 LIQQDMSPEERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EECCCCChHHHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 655422222222233 789999999665 44443322 36788999999998
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.21 E-value=1.8e-08 Score=112.03 Aligned_cols=137 Identities=18% Similarity=0.096 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC----C
Q 005436 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----G 334 (697)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~----g 334 (697)
|.+.....+..+... .+|.+||.+++...++.+++.|...+ .+. +...|..++ +...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~-~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAE-IVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCC-EEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 555555666666554 56789999999999999999997653 233 334555432 2334455554 5
Q ss_pred CcEEEEecCccccccCC----------CCeEEEEecCcccceeecCC--------CCcccccccccCHHhHHHhhcccCC
Q 005436 335 KRKVVISTNIAETSLTL----------EGIVYVVDSGFSKQRFYNPI--------SDIENLVVAPISKASARQRAGRAGR 396 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdi----------p~v~~VId~g~~k~~~yd~~--------~~~~~l~~~~~S~~~~~Qr~GRaGR 396 (697)
...||++|+.+.+|||+ +.++.||..-+.-.. -||- .+-..+...|...-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 236777654443211 1221 1222222335566778899999999
Q ss_pred C--C--CcEEEEccCh
Q 005436 397 V--R--PGKCYRLYTE 408 (697)
Q Consensus 397 ~--~--~G~~~~l~~~ 408 (697)
. . .|....|=++
T Consensus 601 ~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 601 HPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCCcCceEEEEEeCC
Confidence 8 3 5665555443
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=99.16 E-value=2.1e-11 Score=132.21 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=78.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhh----hccCCCC--CeEEEEecCCCCHHHHhhccC---CCCCCCcEEEEecCcccc
Q 005436 277 GDILVFLTGQDDIDATIQLLTEEAR----TSKKNSS--GLIILPLYSGLSRAEQEQVFS---PTPRGKRKVVISTNIAET 347 (697)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~----~~~~~~~--~~~v~~lh~~l~~~~r~~v~~---~f~~g~~kilvaT~i~e~ 347 (697)
.+.+-||.+.+....+++.+..... ++..+.. .+.+-...|.|...+|...++ .|+..+.|||-..-.+.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3467899888887777766654321 1222223 345555668999888866544 467789999999999999
Q ss_pred ccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcE
Q 005436 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (697)
Q Consensus 348 Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~ 401 (697)
|||+|..+-||. |||+..+- ..+|-+||+.|..+|+
T Consensus 541 GVDVPaLDsViF--------f~pr~smV----------DIVQaVGRVMRKa~gK 576 (1518)
T COG4889 541 GVDVPALDSVIF--------FDPRSSMV----------DIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CCCccccceEEE--------ecCchhHH----------HHHHHHHHHHHhCcCC
Confidence 999999999997 67766554 4459999999997775
No 149
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.15 E-value=6.3e-09 Score=115.45 Aligned_cols=302 Identities=19% Similarity=0.212 Sum_probs=167.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
..+.+.+|.+|.|||||+.+-.++......+..++++++..+.++.+ ++.++.... . ...+-|....+........
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~s-L~~rf~~~~-l--~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKS-LAERFKKAG-L--SGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHH-HHHHHhhcC-C--Ccceeeecccccccccccc
Confidence 35678999999999999988888877643456778999888888664 444443321 1 1222232222221211134
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC--cCh------hHHHHHHHHHHHhCCCceEEEecccccHHHHHHH
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--IST------DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~--~~~------d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~ 214 (697)
+-+++..+.|.+.. ...+.++++|||||+-... +.+ .....+++.+.+ ..-++|+|-|+++...+ ++
T Consensus 123 ~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln~~tv-dF 197 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLNDQTV-DF 197 (824)
T ss_pred CeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCCHHHH-HH
Confidence 55666677776653 3457889999999986110 111 112223333333 34579999999976533 34
Q ss_pred hhcCcCCCCCcccccCCCCCCcEEEec--cceeeeE-EEecCCC---------------------------------cch
Q 005436 215 FHARKGRRGLEGVELVPRLEPAILSVE--GRGFNVQ-IHYVEEP---------------------------------VSD 258 (697)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~-~~~~~~~---------------------------------~~~ 258 (697)
+.......... ++..+ +..|.-. ..+.... ...
T Consensus 198 l~~~Rp~~~i~-----------vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (824)
T PF02399_consen 198 LASCRPDENIH-----------VIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISN 266 (824)
T ss_pred HHHhCCCCcEE-----------EEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccccc
Confidence 33322111111 11000 0001000 0000000 000
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEE
Q 005436 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (697)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ki 338 (697)
....-...+..-. ..+.+|-||+.|...++.+++..... ...|..++|.-+.. .+. . =++.+|
T Consensus 267 ~~~tF~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~--W~~~~V 329 (824)
T PF02399_consen 267 DETTFFSELLARL--NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-S--WKKYDV 329 (824)
T ss_pred chhhHHHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-c--ccceeE
Confidence 0001111121111 34667889999999888887777654 66788888876555 222 2 247999
Q ss_pred EEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 339 lvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
++=|++...|+++.+..+=-.+++.| +.. .-.+..+..|++||+-.......|..++......
T Consensus 330 viYT~~itvG~Sf~~~HF~~~f~yvk-----~~~-------~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~~ 392 (824)
T PF02399_consen 330 VIYTPVITVGLSFEEKHFDSMFAYVK-----PMS-------YGPDMVSVYQMLGRVRSLLDNEIYVYIDASGARS 392 (824)
T ss_pred EEEeceEEEEeccchhhceEEEEEec-----CCC-------CCCcHHHHHHHHHHHHhhccCeEEEEEecccccC
Confidence 99999999999997554321111211 111 1245567889999996667777777777654433
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.12 E-value=1.3e-08 Score=116.66 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC----C
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT----P 332 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f----~ 332 (697)
.++.......+..+.. .++.+|||+++.+..+.+++.|.... +..+. .+|.. .+..+++.| .
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhc
Confidence 3466677777777766 34458999999999999999986532 22333 34543 345555444 4
Q ss_pred CCCcEEEEecCccccccCCCC--eEEEEecCcccceeecCC----------CCcccc--cccccCHHhHHHhhcccCCC-
Q 005436 333 RGKRKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI----------SDIENL--VVAPISKASARQRAGRAGRV- 397 (697)
Q Consensus 333 ~g~~kilvaT~i~e~Gvdip~--v~~VId~g~~k~~~yd~~----------~~~~~l--~~~~~S~~~~~Qr~GRaGR~- 397 (697)
.|+..||++|..+.+|||+|+ .++||-.+++-..--||. .|-+.+ ...|.....+.|-+||.=|.
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 577889999999999999987 688887776422111110 111111 11244556689999999998
Q ss_pred -CCcEEEEc
Q 005436 398 -RPGKCYRL 405 (697)
Q Consensus 398 -~~G~~~~l 405 (697)
..|..+.+
T Consensus 663 ~D~G~i~il 671 (697)
T PRK11747 663 QDRGRVTIL 671 (697)
T ss_pred CceEEEEEE
Confidence 45665544
No 151
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.02 E-value=8.4e-09 Score=116.89 Aligned_cols=354 Identities=19% Similarity=0.201 Sum_probs=197.4
Q ss_pred CCCcHHHHHHHH----HHHhcCCEEEEEcCCCChHHHHHHHHHHh--ccccCCCeEEEEECccHHHHHHHHHHHHHHhCC
Q 005436 48 RLPVYKYRTAIL----YLVETHATTIIVGETGSGKTTQIPQYLKE--AGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (697)
Q Consensus 48 ~lPi~~~q~~i~----~~l~~~~~~ii~apTGsGKT~~lp~~l~~--~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~ 121 (697)
.+-+..||-+=+ ....+++++|+.-.-|-|||.|--.++.. ....-.+..|+|+|..-+.+ +.+.+....+.
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~--W~~ef~~w~~m 445 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA--WEREFETWTDM 445 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH--HHHHHHHHhhh
Confidence 456778886544 44467899999999999999443333221 11223466788998876644 44445555666
Q ss_pred cceeEEeeEe----------ecCCcCCCCCceEEEechHHHHHHHhcCCCCC--CCcEEEEeCCCcCCcChhHH-HHHHH
Q 005436 122 KVGEEVGYTI----------RFEDFTNKDLTAIKFLTDGVLLREMMDDPLLT--KYSVIMVDEAHERSISTDIL-LGLLK 188 (697)
Q Consensus 122 ~~~~~~g~~~----------~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~--~~~~iIiDE~Her~~~~d~l-~~~l~ 188 (697)
++..++|... -.......-..+++++|.++++.- ...|. .+.+++||||| |..+.+.. ...+.
T Consensus 446 n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD---k~~L~~i~w~~~~vDeah-rLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 446 NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD---KAELSKIPWRYLLVDEAH-RLKNDESKLYESLN 521 (1373)
T ss_pred ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc---HhhhccCCcceeeecHHh-hcCchHHHHHHHHH
Confidence 6666677221 111211111578999999998742 12232 46799999999 77655433 33333
Q ss_pred HHHHhCCCceEEEecccc---cHHHHHHHhhcC-cCCCC-Ccc------------cc-cCCCCCCcEE-----Eecccee
Q 005436 189 KIQRCRSDLRLIISSATI---EAKSMSAFFHAR-KGRRG-LEG------------VE-LVPRLEPAIL-----SVEGRGF 245 (697)
Q Consensus 189 ~~~~~~~~~~ii~~SAT~---~~~~~~~~~~~~-~~~~~-~~~------------~~-~~~~~~~~~~-----~~~~~~~ 245 (697)
.+ .-+- -+++|.|+ +.+.+-.++.-. |..-. +.. +. +.....|.++ .++...-
T Consensus 522 ~f---~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 522 QF---KMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred Hh---cccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 22 2223 46778888 444443332111 10000 000 00 0000000000 0010000
Q ss_pred e-------eEE------Ee----------cC----CC------------------------cchHHH--------HHHHH
Q 005436 246 N-------VQI------HY----------VE----EP------------------------VSDYVQ--------AAVST 266 (697)
Q Consensus 246 ~-------v~~------~~----------~~----~~------------------------~~~~~~--------~~~~~ 266 (697)
+ |+. +| +. .. ...+.. ..+..
T Consensus 598 ~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~ 677 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQA 677 (1373)
T ss_pred CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHH
Confidence 0 000 00 00 00 000000 01111
Q ss_pred HHH----------H--HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC-
Q 005436 267 VLL----------I--HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR- 333 (697)
Q Consensus 267 ~~~----------~--~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~- 333 (697)
++. + .....+.+||||..-+....-++++|... ++...-+.|++..+.|+.+++.|..
T Consensus 678 lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap 748 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAP 748 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCC
Confidence 100 0 01235678999999888888888988766 7888999999999999999999864
Q ss_pred --CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHh
Q 005436 334 --GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (697)
Q Consensus 334 --g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 411 (697)
...-.|+||-..+-|||+-..+.||. ||..-+ |..--++.=|+-|.|-...=.+|||+++..+
T Consensus 749 ~SddFvFLLSTRAGGLGINLatADTVII--------FDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 749 DSDDFVFLLSTRAGGLGINLATADTVII--------FDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CCCceEEEEecccCcccccccccceEEE--------eCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 36789999999999999998888875 443333 2222333344444444455689999999988
Q ss_pred hhhCCCCCCCcccccchhHHHHHHHHc
Q 005436 412 VKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (697)
Q Consensus 412 ~~~~~~~~~pei~~~~l~~~~L~l~~~ 438 (697)
+..|-+. --++.-|+.+++|....
T Consensus 814 EeEilER---Ak~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 814 EEEILER---AKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred HHHHHHH---HHHHhhhHHHHHHhhcc
Confidence 7732211 01223566666666553
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.01 E-value=4.7e-08 Score=106.42 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=92.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC--cEEEEecCccccccCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTLE 352 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~--~kilvaT~i~e~Gvdip 352 (697)
.+..+|+|..++....-+...|... .++..+.+.|..+...|..+++.|.++. .-.|++|-+.+-|+|+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 4558999999998887777777542 4899999999999999999999999774 34678889999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
+.+-||- |||.-+ |.+-.++.-|+=|-|-.+.=.+|||.+....+.
T Consensus 617 gAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 617 GANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 8888886 666554 445566777777888778888999998655443
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.96 E-value=5.9e-08 Score=112.10 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc-
Q 005436 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR- 336 (697)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~- 336 (697)
.+.......+..+... .++++|||+++.+..+.+++.+.... .......+|..+.. ..++.|.++.-
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 4556666666666655 44589999999999999999987652 11344556665555 45555554433
Q ss_pred EEEEecCccccccCCCCe--EEEEecCccccee----------ecCCCC--cccccccccCHHhHHHhhcccCCC--CCc
Q 005436 337 KVVISTNIAETSLTLEGI--VYVVDSGFSKQRF----------YNPISD--IENLVVAPISKASARQRAGRAGRV--RPG 400 (697)
Q Consensus 337 kilvaT~i~e~Gvdip~v--~~VId~g~~k~~~----------yd~~~~--~~~l~~~~~S~~~~~Qr~GRaGR~--~~G 400 (697)
-++|+|..+.+|||+|+- +.||..|++-... |....+ ...+...+.......|-+||+-|. ..|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999875 6666666532211 111111 122333467788899999999998 446
Q ss_pred EEEEccC---hhHhhhhCCCCCCCccccc
Q 005436 401 KCYRLYT---EEYFVKEIPAEGIPEMQRS 426 (697)
Q Consensus 401 ~~~~l~~---~~~~~~~~~~~~~pei~~~ 426 (697)
.++.+=. ...|...+++.-.+.+...
T Consensus 610 ~ivllD~R~~~~~y~~~l~~~l~~~~~~~ 638 (654)
T COG1199 610 VIVLLDKRYATKRYGKLLLDSLPPFPKSK 638 (654)
T ss_pred EEEEecccchhhhHHHHHHHhCCCCcccc
Confidence 6665532 2334443444444444333
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=3.1e-08 Score=112.39 Aligned_cols=117 Identities=23% Similarity=0.256 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
....+..+...+. .+.+|||-+.|.+..+.+++.|... ++..-.+++.....|-.-|-++-+.| .|-
T Consensus 614 ~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVT 680 (1112)
T PRK12901 614 YNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVT 680 (1112)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCC--cEE
Confidence 3455566666664 5778999999999999999999875 55555566665555555554544444 488
Q ss_pred EecCccccccCCC--------CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 340 ISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 340 vaT~i~e~Gvdip--------~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
||||+|++|-||. +=-+||-+.. +-|..-=.|-.|||||. .||.+-.++|
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 9999999999986 1124554333 55666667999999999 7897666555
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.73 E-value=2e-06 Score=89.18 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC-CcE-EEEecCccccccCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTL 351 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~k-ilvaT~i~e~Gvdi 351 (697)
.++.+.+||+.-..-.+.+...+++. ++....+.|..+..+|....+.|... +.+ -+++-..++.|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 45678999999888888777777665 77788899999999999999999754 333 46677889999999
Q ss_pred CCeEEEEecCc
Q 005436 352 EGIVYVVDSGF 362 (697)
Q Consensus 352 p~v~~VId~g~ 362 (697)
...+.||..-+
T Consensus 561 tAa~~VVFaEL 571 (689)
T KOG1000|consen 561 TAASVVVFAEL 571 (689)
T ss_pred eccceEEEEEe
Confidence 99999997555
No 156
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.67 E-value=6.8e-06 Score=92.10 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=77.8
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC--C-cEEEEecCccccccCCCCeE
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--K-RKVVISTNIAETSLTLEGIV 355 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~-~kilvaT~i~e~Gvdip~v~ 355 (697)
-.|++........+.+.+..+ .++.++.+||.|+..+|+.+++.|.+. . .-.+.+|-+.+.||++=+.+
T Consensus 597 ~~v~Isny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs 668 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS 668 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccc
Confidence 345556677777777777666 389999999999999999999999643 3 34566778899999998888
Q ss_pred EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhh
Q 005436 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFV 412 (697)
Q Consensus 356 ~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~ 412 (697)
-||. ||+.-+. . .=.|-++||=|. ++=..|+|++....+
T Consensus 669 Rlil--------~D~dWNP-------a---~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 669 RLIL--------FDPDWNP-------A---VDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred eEEE--------eCCCCCc-------h---hHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 8886 5554442 2 222666666665 667889998865443
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.53 E-value=3.4e-06 Score=99.64 Aligned_cols=132 Identities=22% Similarity=0.203 Sum_probs=77.1
Q ss_pred CEEEEEcCCCChHH-HH--HHHHHHhccccCCCeEEEEECccHHHHHHHHHH--HHHHhCCcceeEEeeEeecCCcCCCC
Q 005436 66 ATTIIVGETGSGKT-TQ--IPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMGVKVGEEVGYTIRFEDFTNKD 140 (697)
Q Consensus 66 ~~~ii~apTGsGKT-~~--lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 140 (697)
+.-+|.--|||||| |. +...+.+. .....+++||-.+.|-.|..... +........ ...-...........
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDG 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc--cccCHHHHHHHHhcC
Confidence 45899999999999 32 33334443 34567888998888877743332 111111100 000000001111112
Q ss_pred CceEEEechHHHHHHHhcC-C--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 141 LTAIKFLTDGVLLREMMDD-P--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~-~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
...|+|+|.+.+-...... + .-.+--+||+|||| |+..... ...+ ....++...+++|.|+
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~-~~~~---~~~~~~a~~~gFTGTP 413 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGEL-AKLL---KKALKKAIFIGFTGTP 413 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHH-HHHH---HHHhccceEEEeeCCc
Confidence 4689999999998776554 1 12334578999999 7765543 3333 3334567899999999
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.52 E-value=8.5e-06 Score=92.95 Aligned_cols=114 Identities=22% Similarity=0.304 Sum_probs=85.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC-CcEEE-EecCccccccCCCC
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRKVV-ISTNIAETSLTLEG 353 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~kil-vaT~i~e~Gvdip~ 353 (697)
..++||||.=+..+.-+.+.|.+. ..+.+.-..+.|+.++.+|.++.+.|.++ .++|+ ++|.+.+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 357999999888888777776554 23566677899999999999999999988 67765 56679999999999
Q ss_pred eEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 354 v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
.+.||... -.|||-+++ |-+-||.|. +-=.+|||+++...++
T Consensus 1414 ADTVVFvE----HDWNPMrDL--------------QAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFVE----HDWNPMRDL--------------QAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEEe----cCCCchhhH--------------HHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 99999632 124444432 555555554 4456899999877655
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.44 E-value=9.9e-06 Score=83.96 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCCCeEEEEecCCCCHHHHhhccCCCCCC--CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccC
Q 005436 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (697)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S 383 (697)
...|+..+.+-|+|++..|...++.|.+. .+-.|++-...+..+|+-....|+..+. |-.
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP------------------WWN 720 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP------------------WWN 720 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc------------------ccc
Confidence 44688999999999999999999999865 3445666678888889988888887544 444
Q ss_pred HHhHHH---hhcccCCCCCcEEEEccChhHhhh
Q 005436 384 KASARQ---RAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 384 ~~~~~Q---r~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
.+--+| |+-|.|.-+|=+++++.-+...+.
T Consensus 721 paVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 721 PAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred HHHHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 443334 555566668888888887665443
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.34 E-value=5.7e-06 Score=90.54 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC--CcEEEEecCccccccCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLE 352 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~kilvaT~i~e~Gvdip 352 (697)
.+.+||+|..=-....-+...|.. .++....+.|...-.+|+.+++.|... -.-.|++|-..+-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~---------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT---------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh---------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 457799996543333333333332 288899999999999999999999754 345789999999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
+.++||-.+. .|+ |..--++.-|+-|.|-.+|=.+|+|+++...+.
T Consensus 847 ~An~VIihD~----dFN-----------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVIIHDI----DFN-----------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEEEeec----CCC-----------CcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9999986443 133 445556778888888889999999999987665
No 161
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.34 E-value=2.2e-07 Score=104.16 Aligned_cols=229 Identities=16% Similarity=0.193 Sum_probs=127.0
Q ss_pred cCCCcHHHHHHHHHHHhc----------------CCEEEEEcCCCChHHHHHHHHHHh-ccccCCCeEEEEECccHHHHH
Q 005436 47 QRLPVYKYRTAILYLVET----------------HATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~----------------~~~~ii~apTGsGKT~~lp~~l~~-~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
..+|+...+...++++.+ +.+.++-+|||+|||..+...+.. ....++.++++++|-.++...
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 455666666555555532 345788899999999544433332 222355789999999999765
Q ss_pred HHHH---HHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHh---cCCCCCCCcEEEEeCCCcCCcChh-H
Q 005436 110 AVAS---RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM---DDPLLTKYSVIMVDEAHERSISTD-I 182 (697)
Q Consensus 110 ~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~---~~~~l~~~~~iIiDE~Her~~~~d-~ 182 (697)
.... +.... |.++....|.... +-.... .++++++||+......+ ....+.+++.+|+||.|..+-+.. .
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPV 1065 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTP-DVKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPV 1065 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCC-Chhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCCCcce
Confidence 3322 22222 4555555542221 111222 68899999998765544 344588999999999994433311 1
Q ss_pred HHHHH---HH-HHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcc
Q 005436 183 LLGLL---KK-IQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS 257 (697)
Q Consensus 183 l~~~l---~~-~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (697)
+.... .. -....+.++++++|--+ +..++++|++..+. ...+ ..-++.|.+.+....+..
T Consensus 1066 le~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~-~nf~--------------~svrpvp~~~~i~gfp~~ 1130 (1230)
T KOG0952|consen 1066 LEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM-YNFR--------------PSVRPVPLEVHIDGFPGQ 1130 (1230)
T ss_pred EEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc-CCCC--------------cccccCCceEeecCCCch
Confidence 11111 11 11134567888877555 89999999987653 1111 011222333333333321
Q ss_pred hHHHHH----HHHHHHHHhcCCCCcEEEEcCCHHHHHHHH
Q 005436 258 DYVQAA----VSTVLLIHDKEPPGDILVFLTGQDDIDATI 293 (697)
Q Consensus 258 ~~~~~~----~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~ 293 (697)
.|.... ......+....+..++|||+.+++...--+
T Consensus 1131 ~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta 1170 (1230)
T KOG0952|consen 1131 HYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTA 1170 (1230)
T ss_pred hcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccch
Confidence 111111 112223344567788999999887554333
No 162
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=8.6e-06 Score=78.26 Aligned_cols=129 Identities=24% Similarity=0.280 Sum_probs=81.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
++++++||||+||||.+..+............++.+-+.|..+....+.+++.+++++.. . ....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~----~~~~------ 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----A----RTES------ 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----S----STTS------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----h----hcch------
Confidence 468899999999998888777655444344458888999999988888899998865421 0 0000
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHH
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMS 212 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~ 212 (697)
.|..+++........+++++|+||-+. |+........-++.+.. ..+.-.++.+|||...+.+.
T Consensus 67 --~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 --DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp --CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred --hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 122222221111112468999999998 66555444444545444 45666788999999555443
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.25 E-value=3.6e-06 Score=87.38 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH---hcccc-CCCeEEEEECccHHHHHHHHHHHHHHhC---CcceeEEeeE-eecC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLK---EAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVGYT-IRFE 134 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~---~~~~~-~~~~~Ivv~p~r~l~~~~~~~~~~~~~~---~~~~~~~g~~-~~~~ 134 (697)
...+..++.-++|+|||.++-.++. ..... ....++|++|+ .+.. ++...+.+... .++....|.. ....
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~-~W~~E~~~~~~~~~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLS-QWKEEIEKWFDPDSLRVIIYDGDSERRRL 100 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHH-HHHHHHHHHSGT-TS-EEEESSSCHHHHT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhh-hhhhhhccccccccccccccccccccccc
Confidence 3457789999999999955444433 22111 11247889988 4444 44555555552 2222222221 0111
Q ss_pred CcCCCCCceEEEechHHHH--------HHHhcCCCCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 135 DFTNKDLTAIKFLTDGVLL--------REMMDDPLLTKYSVIMVDEAHERS-ISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 135 ~~~~~~~~~I~v~T~~~Ll--------~~l~~~~~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
........+++++|.+.+. ..+.. .++++||+||+|... ..+... .. +.... ....+++|||
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~-~~---l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRY-KA---LRKLR-ARYRWLLSGT 171 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHH-HH---HHCCC-ECEEEEE-SS
T ss_pred cccccccceeeecccccccccccccccccccc----ccceeEEEeccccccccccccc-cc---ccccc-cceEEeeccc
Confidence 1222236889999999988 12221 348999999999542 222222 22 22222 4567889999
Q ss_pred c
Q 005436 206 I 206 (697)
Q Consensus 206 ~ 206 (697)
+
T Consensus 172 P 172 (299)
T PF00176_consen 172 P 172 (299)
T ss_dssp -
T ss_pred c
Confidence 8
No 164
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.20 E-value=3.6e-05 Score=79.97 Aligned_cols=130 Identities=23% Similarity=0.223 Sum_probs=94.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcc--ccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~--~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+++++.++||||.||||.+..+..... .....-.|+-+-+-|+.+....+.+++.+|+++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 378999999999999977776655443 223334588999999999988888999988754
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHHhhc
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
.++-+|.-|...+.. +.++++|.||=+- |+........-++.+.... +.-..+.+|||...+++.+.+..
T Consensus 264 --~vv~~~~el~~ai~~---l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 --EVVYSPKELAEAIEA---LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred --EEecCHHHHHHHHHH---hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 345566666655432 6788999999999 6765556666666655543 34456789999987777776654
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=2.3e-05 Score=88.28 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=76.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~ 122 (697)
..+-.+.+--+++-++.-+..-|.-.-||=|||. .+|.++.. + .+..+-+++.---|+.. .+...+.+.+|..
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylna--L-~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNA--L-AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHh--c-CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 3344445555667777777778999999999993 34444433 2 34446666666556554 4455567778887
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHH-----HHHHhc---CCCCCCCcEEEEeCCC
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMD---DPLLTKYSVIMVDEAH 174 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~L-----l~~l~~---~~~l~~~~~iIiDE~H 174 (697)
+|....+....+....- .++|+|+|...| ...+.. +.......+-|+||++
T Consensus 152 vG~~~~~m~~~ek~~aY-~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 152 VGVILAGMSPEEKRAAY-ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeeccCCCChHHHHHHH-hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 77666555444444444 689999998543 222221 2235567777777777
No 166
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.12 E-value=0.00086 Score=77.85 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred CCCcHHHHHHHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeE
Q 005436 48 RLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~-~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~ 126 (697)
...+...|.+++..+.. ++.++|+|++|+||||++-.+.... ...+.++++++|+-..+. . +....|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~Aa~-~----L~~~~g~~---- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGKAAE-G----LQAESGIE---- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHH-H----HHhccCCc----
Confidence 35678888888888876 5899999999999998887654322 223566788888755432 2 22222221
Q ss_pred EeeEeecCCcCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
-.|-..++..+..+ ..+...++|||||+- .++...+..+++.... .+.++|++.
T Consensus 420 -------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 -------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred -------------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 01233332222222 236688999999998 5566666666654433 356777766
No 167
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.11 E-value=1.2e-05 Score=77.48 Aligned_cols=121 Identities=26% Similarity=0.372 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 51 i~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
+...|.+++..+..+ +..+|+|+.|+||||.+..+.... ...+.++++++|+...+.. +.+..+....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~g~~v~~~apT~~Aa~~-----L~~~~~~~a~---- 71 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL-EAAGKRVIGLAPTNKAAKE-----LREKTGIEAQ---- 71 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH-HHTT--EEEEESSHHHHHH-----HHHHHTS-EE----
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH-HhCCCeEEEECCcHHHHHH-----HHHhhCcchh----
Confidence 345677888877533 578999999999998776543322 2245678999999877654 2333332211
Q ss_pred eEeecCCcCCCCCceEEEechHHHHHHHhc-----CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
|-..++..... .+.+...++|||||+- .++...+..+++.+.. .+.|+|++.
T Consensus 72 -------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 72 -------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp -------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred -------------------hHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 11111111100 0014567899999998 4555555555544433 356777776
Q ss_pred c
Q 005436 204 A 204 (697)
Q Consensus 204 A 204 (697)
=
T Consensus 129 D 129 (196)
T PF13604_consen 129 D 129 (196)
T ss_dssp -
T ss_pred C
Confidence 3
No 168
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=9.2e-05 Score=77.06 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=72.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
+.+.++||||+||||.+..+..... ..+.++ ++-+-+.++++....+..+...++.+ +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv--------------------~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--------------------I 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE--------------------E
Confidence 5789999999999988877765442 233344 44444666555433333444433321 2
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHHHHhCCCceEEEecccccHHHHH
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRCRSDLRLIISSATIEAKSMS 212 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~ 212 (697)
...++..+.+.+..-....++++|+||-+- |+. +.+.+..+.+.+....++..++.+|||.......
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 233566665554322112368999999998 443 3344444444444445555677799998554433
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00011 Score=77.85 Aligned_cols=129 Identities=22% Similarity=0.312 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcccc---CCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCC
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWA---DGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~---~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 140 (697)
..+++++||||+||||.+..+....... .+.++ ++-+-+-+.++....+.+++.+|+++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK---------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----------------
Confidence 3678999999999998887665433221 23333 555666667666556666666665431
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCC-ceEEEecccccHHHHHHHhhc
Q 005436 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSD-LRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~-~~ii~~SAT~~~~~~~~~~~~ 217 (697)
..-++..+...+.. +.++++||||++. |+......+.-++.+.. ..++ -.++.+|||...+.+.+.|..
T Consensus 238 ----~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 238 ----AIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ----eeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 11133444443322 4679999999999 55432222333333333 3333 467899999987777776654
No 170
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=4.1e-06 Score=75.25 Aligned_cols=114 Identities=22% Similarity=0.350 Sum_probs=61.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcccc----CCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA----DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~----~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (697)
++++.++|.||+|+|||+++..+....... ....++.+..+..-....+.+.+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999888887654211 134455555554444456677777777654321
Q ss_pred CCCceEEEechHHH----HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 139 KDLTAIKFLTDGVL----LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 139 ~~~~~I~v~T~~~L----l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
-.+...+ .+.+.... ..+|||||+|... . .-....++.+.. ..++++|+.+
T Consensus 69 -------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G 123 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVG 123 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEE
T ss_pred -------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEE
Confidence 1123333 33333322 2799999999532 3 334444444433 5667666554
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=7.1e-05 Score=78.49 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=77.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCC-CeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~-~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 140 (697)
.++.+++++||||+||||.+..+........+ .++ ++.+-+-++.+.+..+.+++.+|..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45789999999999999888877665432223 233 444445556666666666777665432
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-CCCceEEEecccccHHHHH
Q 005436 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLRLIISSATIEAKSMS 212 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-~~~~~ii~~SAT~~~~~~~ 212 (697)
.+.+++.+...+.. +.+.++|+||++- +....+.+...+..+... .+.-.++.+|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~~---l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALAE---LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHHH---hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 12222233222221 4567999999998 554445566666665432 2345688999998665544
No 172
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.87 E-value=0.0037 Score=73.75 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=77.4
Q ss_pred cCCCcHHHHHHHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 47 QRLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~-~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
..+.+...|.+++..+.. ++.++|+|+.|+||||++-.+.. .....+.+++.++|+-..+ ..+ ....|+.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~-~~e~~G~~V~~~ApTGkAA-~~L----~e~tGi~--- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVARE-AWEAAGYEVRGAALSGIAA-ENL----EGGSGIA--- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEecCcHHHH-HHH----hhccCcc---
Confidence 356788889888888776 56889999999999988654332 2122355677788775543 222 2212211
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
-.|...++..+..+ ..+...++|||||+- ++++..+..+++.+. ....++|++.=
T Consensus 414 --------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD 469 (988)
T PRK13889 414 --------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGD 469 (988)
T ss_pred --------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECC
Confidence 11333333222222 236678999999998 566666666665443 34577887764
Q ss_pred c
Q 005436 205 T 205 (697)
Q Consensus 205 T 205 (697)
+
T Consensus 470 ~ 470 (988)
T PRK13889 470 P 470 (988)
T ss_pred H
Confidence 3
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.83 E-value=8.9e-05 Score=73.00 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=43.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
..-|....|...+.++.+++.+++.||+|||||+++-.+..+......-..|+++.|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 3458899999999999999999999999999998877666543322333445555543
No 174
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.0005 Score=74.24 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcc-ccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAG-WADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~-~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
+++++++||||+||||.+..+..... ...+.++ ++-+-+.+.++.......+...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 56899999999999988877665443 2233444 44445555555444444555555432
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-h-CCCceEEEecccccHHHHHHHh
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C-RSDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~-~~~~~ii~~SAT~~~~~~~~~~ 215 (697)
....+++.+...+.. +.++++||||.+- +..........+..+.. . .+.-.++++|||.....+.+..
T Consensus 282 -~~~~~~~~l~~~l~~---~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 282 -EVVYDPKELAKALEQ---LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -EccCCHHhHHHHHHH---hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 112234444444432 3468999999997 44332223333333333 2 3344578899999766665543
No 175
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.0003 Score=73.11 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=76.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
..+++++++||||+||||.+..+...... .+.++ ++-+-|-+.++....+..++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------ 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------ 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------------------
Confidence 35778999999999999888776654322 33344 45555666655433343444444321
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHHHHhh
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFH 216 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~~~~~ 216 (697)
.+..+|+.+...+..-....++++|+||=+- |+...+-.+.-++.+.. ..++.-++.+|||.......+++.
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 1123466555444322223568999999998 44333333333444433 445566778899886666665543
No 176
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=0.00029 Score=73.16 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=68.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE-CccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~-p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
..++++|++|+||||.+..+..... ..+.+++++. -+.+.++....+..+..+|.++.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 5788999999999988776654332 2334454443 445555554445566667654321 1 0000
Q ss_pred EEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHHHH-hCCCceEEEeccccc
Q 005436 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQR-CRSDLRLIISSATIE 207 (697)
Q Consensus 145 ~v~T~~~-Ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~ 207 (697)
.|.. +.+.+.. ....++++||||.++ |.. +.+.+..+ +.+.+ ..++..++.++||..
T Consensus 206 ---dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL-~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 ---DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDEL-KKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHH-HHHHHhhCCceEEEeeccccc
Confidence 1111 1111111 012467899999999 554 44444444 44433 567888899999883
No 177
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.00029 Score=81.41 Aligned_cols=125 Identities=26% Similarity=0.208 Sum_probs=77.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCC--CeEEEEECccHHHHHHHHHHHHHHhCCcce
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~--~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~ 124 (697)
....+...|.+++..+.+++.++|+|+.|+||||++-.++..... .+ ..+++++|+-+.+. ++.+..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~-----~L~e~~g~~a- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAK-----RLGEVTGLTA- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHH-----HHHHhcCCcc-
Confidence 346678889999999999999999999999999888765543221 22 45677788766543 3343333211
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhc------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~------~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
.|-..++..... .......++|||||++ +++...+..+++. ...+.+
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCE
Confidence 111122211000 0012457899999999 4565555555543 345678
Q ss_pred EEEeccc
Q 005436 199 LIISSAT 205 (697)
Q Consensus 199 ii~~SAT 205 (697)
+|++.=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8886643
No 178
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.72 E-value=0.0026 Score=67.92 Aligned_cols=245 Identities=14% Similarity=0.115 Sum_probs=146.4
Q ss_pred CceEEEechHHHHHHHhc------CC-CCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHHhC------------------
Q 005436 141 LTAIKFLTDGVLLREMMD------DP-LLTKYSVIMVDEAHERS-ISTDILLGLLKKIQRCR------------------ 194 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~------~~-~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~~~------------------ 194 (697)
+.+|++++|=-|...+.. +. .|+.+.++|||.+|-.. .+-+.+..+++.+-...
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999777665542 11 38999999999999222 23344444444332111
Q ss_pred ---CCceEEEecccccHHHHHHHhhc-CcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcc-------hHHHHH
Q 005436 195 ---SDLRLIISSATIEAKSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS-------DYVQAA 263 (697)
Q Consensus 195 ---~~~~ii~~SAT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~ 263 (697)
.=.|.|++|+..+++ +...|.. +....+..... ..... .-.+..-..++...|...+.. ...+--
T Consensus 211 ~a~~~RQtii~S~~~~pe-~~slf~~~~~N~~G~v~~~--~~~~~-~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF 286 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPE-INSLFNRHCQNYAGKVRLK--PPYEA-SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYF 286 (442)
T ss_pred cchheeEeEEecCCCCHH-HHHHHHhhCcCccceEEEe--ecccc-ceeeeccccCCceEEEEecCCCcchhhhHHHHHH
Confidence 125789999988765 4444443 21111100000 00000 011111112333333321111 112222
Q ss_pred HHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEec
Q 005436 264 VSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (697)
Q Consensus 264 ~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT 342 (697)
...++.... ....+.+|||+|+.-+-..+.+.|.+. ++..+.+|--.+..+-.++-..|..|+.+||+-|
T Consensus 287 ~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T 357 (442)
T PF06862_consen 287 TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYT 357 (442)
T ss_pred HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE
Confidence 233333333 556688999999999999999998754 7888889988999998899999999999999999
Q ss_pred Cc--cccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCC----CCCcEEEEccChhHhhh
Q 005436 343 NI--AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR----VRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 343 ~i--~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~~~ 413 (697)
.= .=+=..|.+++.||.+|++.. |.-..++..+.+.... .....|..||++-+...
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~---------------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPEN---------------PQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCC---------------hhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 52 334567888999999777332 2223344444443322 15679999999876655
No 179
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.00019 Score=83.29 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=108.8
Q ss_pred eEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEec-c-ceeeeEEEecCCCcchHHHHHHHHHHHHHhcC
Q 005436 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-G-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (697)
Q Consensus 198 ~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (697)
.+|++|||+ +.+.|.+.++-...... ......+.....++.+. + ...+....|......++.......+..+...
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~- 520 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQD-SPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI- 520 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccce-ecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc-
Confidence 378999999 66777777764221110 00000000011111111 1 1223344444444456777777777777665
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHh--hhccCCCCCeEEEEecCCCCHHHHhhccCCCCC----CCcEEEEec--Cccc
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEA--RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----GKRKVVIST--NIAE 346 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~----g~~kilvaT--~i~e 346 (697)
.+|.+|||+|+....+.+.+.+.+.. ..... ...+..=..+. .++..+++.|.. |.--|++|+ ..+.
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 45789999999999999988876421 00000 11121111111 456777777743 455699999 8999
Q ss_pred cccCCCC--eEEEEecCcccceeecCC--------------CCcccccccccCHHhHHHhhcccCCCCC
Q 005436 347 TSLTLEG--IVYVVDSGFSKQRFYNPI--------------SDIENLVVAPISKASARQRAGRAGRVRP 399 (697)
Q Consensus 347 ~Gvdip~--v~~VId~g~~k~~~yd~~--------------~~~~~l~~~~~S~~~~~Qr~GRaGR~~~ 399 (697)
+|||+++ .+.||-.|++-....|+. .+.. ............|-+||+=|...
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQ-DFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccH-HHHHHHHHHHHHHHhCccccCcC
Confidence 9999987 578888887542211211 1110 11112334667899999999944
No 180
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.68 E-value=1.3e-05 Score=89.89 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC---CCcEEEEecCccccccCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---g~~kilvaT~i~e~Gvdi 351 (697)
.++.+|.|+.-..-...+..+|.-. ++.-..+.|....++|-..++.|.. .-...+++|-..+.|+|+
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNl 795 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNL 795 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccch
Confidence 4677888887665555555555433 6778889999999999887777753 357789999999999999
Q ss_pred CCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 352 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
-..+.||- ||..-.. -...|+.-||-|. ++-.++++.+-..++.
T Consensus 796 Qtadtvii--------fdsdwnp----------~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 796 QTADTVII--------FDSDWNP----------HQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhcceEEE--------ecCCCCc----------hhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 98888875 4433332 2233655555554 6667888888655443
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.00081 Score=61.09 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 55 RTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 55 q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
...+...+.. +..+++.||+|+|||+++-.+..... ..+..++++..
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~ 55 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEeh
Confidence 3445555555 78899999999999987776665543 22344455543
No 182
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.63 E-value=0.00026 Score=81.64 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=49.8
Q ss_pred CceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
...|+++||.+|..-+..+.. +..++.||||||| |...+....-+++.....++..-+.++||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 567999999999988777665 8999999999999 55444333334445555666677899999983
No 183
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.60 E-value=0.02 Score=73.21 Aligned_cols=248 Identities=15% Similarity=0.123 Sum_probs=130.3
Q ss_pred CCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 48 RLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
.+++..-|.+.+..+..+ +..+|+|+.|+||||.+-.++... ...+..+++++|+-+.+ +.+ .+..|..-..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G~~V~~lAPTgrAA-~~L----~e~~g~~A~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA-SEQGYEIQIITAGSLSA-QEL----RQKIPRLAST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHH----HHHhcchhhh
Confidence 456777888888877664 899999999999998877654332 22456788888887643 333 3332321100
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
...+. ..... . ....|...++ ..+..+..-++|||||+- .++...+..+++.... .+.|+|++.=+
T Consensus 501 i~~~l----~~l~~--~-~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 501 FITWV----KNLFN--D-DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHHHH----Hhhcc--c-ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 00000 00000 0 0111222232 122225678999999998 5666677777765543 35778877644
Q ss_pred c------cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc-ceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCc
Q 005436 206 I------EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (697)
Q Consensus 206 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (697)
- ....|..+...... ...... ......+........+....+...+..+.. ....
T Consensus 567 ~QL~sV~aG~~f~~L~~~gv~----------------t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~ 628 (1960)
T TIGR02760 567 AQRQGMSAGSAIDLLKEGGVT----------------TYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQN 628 (1960)
T ss_pred hhcCccccchHHHHHHHCCCc----------------EEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCc
Confidence 2 22334432221110 111110 000111112222222223334444433332 4456
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCC-CCCeEEEEec-CCCCHHHHhhccCCCCCC
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKN-SSGLIILPLY-SGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~v~~lh-~~l~~~~r~~v~~~f~~g 334 (697)
++|+.++.++...+...++..+...+.- ..+..+..+. ..|+..++... ..|+.|
T Consensus 629 tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999999999999999998887543322 2244444444 35677766633 444444
No 184
>PRK06526 transposase; Provisional
Probab=97.58 E-value=0.00032 Score=70.35 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.3
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+-+..+++++++||+|+|||+++..+..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 345677899999999999997776655544
No 185
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.56 E-value=0.00028 Score=70.59 Aligned_cols=124 Identities=19% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCccee
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGE 125 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~ 125 (697)
.+..+..|--..-++.+|+ |+...||=|||..+.......++ .|..+=+++...-|+.. +....+.+.+|+.++.
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 3445555544444445555 99999999999554443333333 45567778888888776 3444577788888776
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHH-HHhc----CC---CCCCCcEEEEeCCCc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLR-EMMD----DP---LLTKYSVIMVDEAHE 175 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~-~l~~----~~---~l~~~~~iIiDE~He 175 (697)
..+.....+....- ..+|+|+|...+.. .+.. .. ..+.+.++|||||+.
T Consensus 152 ~~~~~~~~~r~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 152 ITSDMSSEERREAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp EETTTEHHHHHHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred CccccCHHHHHHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 65532211111122 46799999987653 2221 11 257899999999993
No 186
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.56 E-value=0.024 Score=67.56 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=79.3
Q ss_pred CCCcHHHHHHHHHHHh-cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeE
Q 005436 48 RLPVYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~-~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~ 126 (697)
...+..-|.+.+..+. .++.++|+|+.|+||||++-.+.... ...+.+++.++|+-+.+ +.+.+..|+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~G~~V~g~ApTgkAA-----~~L~e~~Gi~a--- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW-EAAGYRVVGGALAGKAA-----EGLEKEAGIQS--- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEcCcHHHH-----HHHHHhhCCCe---
Confidence 4678888999988774 57899999999999998887654321 22456778888875543 23333334321
Q ss_pred EeeEeecCCcCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
.|-..++..+ .....+..-++|||||+. ++++..+..+++.+.. .+.++|++.=+
T Consensus 450 --------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 --------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred --------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 1222322111 112236667899999998 6677777777666543 35677777633
No 187
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00093 Score=72.49 Aligned_cols=130 Identities=20% Similarity=0.275 Sum_probs=71.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccC-CCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK 139 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~-~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 139 (697)
+..++++.++||||+||||.+..+........ +.++.++ +-+.++............+++.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--------------- 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--------------- 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE---------------
Confidence 34678999999999999988877665432222 2334333 444455443333323333322110
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHh
Q 005436 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 215 (697)
...+++.+...+.. +.++++||||.+- ++.....+...+..+........+++++++.....+.+.+
T Consensus 412 -----~a~d~~~L~~aL~~---l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 412 -----EADSAESLLDLLER---LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred -----ecCcHHHHHHHHHH---hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHH
Confidence 11133344444332 4578999999998 4433333333334443333455688899998655555443
No 188
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.55 E-value=0.00073 Score=67.79 Aligned_cols=139 Identities=20% Similarity=0.186 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe-eEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 143 (697)
..-.++--.||.||--++..++++.......+.|+++....|-... .+.+.. .|........ ........... ...
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da-~RDl~D-IG~~~i~v~~l~~~~~~~~~~~-~~G 138 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDA-ERDLRD-IGADNIPVHPLNKFKYGDIIRL-KEG 138 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHH-HHHHHH-hCCCcccceechhhccCcCCCC-CCC
Confidence 3457777789999998888888877555455689999998887652 222332 2222111111 11111111122 456
Q ss_pred EEEechHHHHHHHhcCC-----------CC--CCCcEEEEeCCCcCC-cCh-----hHHHHHHHHHHHhCCCceEEEecc
Q 005436 144 IKFLTDGVLLREMMDDP-----------LL--TKYSVIMVDEAHERS-IST-----DILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~-----------~l--~~~~~iIiDE~Her~-~~~-----d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
|+++|+..|...-.... ++ ..-.+||+||||.-. ... .-.-.....+...-|+.|+|.+||
T Consensus 139 vlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SA 218 (303)
T PF13872_consen 139 VLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASA 218 (303)
T ss_pred ccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecc
Confidence 99999998877643211 11 223699999999422 111 111223334455568899999999
Q ss_pred cc
Q 005436 205 TI 206 (697)
Q Consensus 205 T~ 206 (697)
|-
T Consensus 219 Tg 220 (303)
T PF13872_consen 219 TG 220 (303)
T ss_pred cc
Confidence 96
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.53 E-value=0.00047 Score=73.19 Aligned_cols=90 Identities=27% Similarity=0.370 Sum_probs=53.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc-cccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
++++|.|..|||||.++..++... ....+..+++++....+.. .+.+.+..... .. ....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~-~l~~~l~~~~~-----------------~~-~~~~ 62 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRN-KLREQLAKKYN-----------------PK-LKKS 62 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHH-HHHHHHhhhcc-----------------cc-hhhh
Confidence 578999999999997666665544 1234556788888877754 23332332220 00 1223
Q ss_pred EEechHHHHHHHh-cCCCCCCCcEEEEeCCC
Q 005436 145 KFLTDGVLLREMM-DDPLLTKYSVIMVDEAH 174 (697)
Q Consensus 145 ~v~T~~~Ll~~l~-~~~~l~~~~~iIiDE~H 174 (697)
.+..+..+..... .......+++|||||||
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 3344444443332 23346789999999999
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.52 E-value=0.00039 Score=55.46 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=36.4
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc---cCCCeEEEEECccHHHHHHHHHHH
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRV 115 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~---~~~~~~Ivv~p~r~l~~~~~~~~~ 115 (697)
..++.+++.++|.||+|||||+.+...+..... ..+.++++++++++.+. .+.+++
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~-~l~~rl 62 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD-ELRERL 62 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH-HHHHHH
Confidence 335665777888999999999665555443321 11456777777776655 555555
No 191
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.0025 Score=64.25 Aligned_cols=129 Identities=18% Similarity=0.268 Sum_probs=70.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
.++.+.+.|++|+|||+.+..+..... ..+.++ ++-+-+.++......+..+...+.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 447899999999999987776654432 123333 44444555544322222333332211
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHH
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS-ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~ 214 (697)
+...++..+.+.+..-....++++||||-+- |. .+.+.+..+.+.+....++..++.+|||...+...++
T Consensus 134 -~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 134 -IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 1112444444333211112468999999998 44 3444555554444445566668889999855444443
No 192
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.45 E-value=0.0003 Score=75.73 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHH
Q 005436 51 VYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (697)
Q Consensus 51 i~~~q~~i~~~l~~~-~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~ 108 (697)
+.+.|.+++....++ ...+|.||+|+|||+.+-.++... ...+.++++|+|+.....
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVd 243 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVD 243 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHH
Confidence 566777777776665 788999999999995544444433 224577888888875544
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.43 E-value=0.0013 Score=73.99 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc--cc--CCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WA--DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~--~~--~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
..|+..+.....++.++|+|+.|+||||.+..++.... .. .+.++++++||-+.+. .+.+.+..... .+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~-rL~e~~~~~~~-~l~~--- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAA-RLAESLRKAVK-NLAA--- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHH-HHHHHHHhhhc-cccc---
Confidence 56777778888899999999999999987766543221 11 1135677777766554 33332222111 0000
Q ss_pred eEeecCCcCCCCCceEEEechHHHHHHHhc-------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-------~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
. ..... ...+...|-..++..... ......+++|||||+= +++...+..+++. ..+..|+|+
T Consensus 223 -~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIl 291 (586)
T TIGR01447 223 -A----EALIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLIL 291 (586)
T ss_pred -c----hhhhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEE
Confidence 0 00000 011223344444322111 1113368999999997 5666555555543 356778887
Q ss_pred ec
Q 005436 202 SS 203 (697)
Q Consensus 202 ~S 203 (697)
+.
T Consensus 292 vG 293 (586)
T TIGR01447 292 LG 293 (586)
T ss_pred EC
Confidence 76
No 194
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0022 Score=68.57 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=79.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccC--CCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWAD--GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~--~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
.++.+.++||||+||||.+..+........ ....++...+.++........+++.+|+++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-----------------
Confidence 467899999999999998886654322111 2234677788788777666667777765431
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHHh
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 215 (697)
.+-++..+...+.. +.+.++++||.+- +......+...++.+.... +.-.++.+|||...+.+.+..
T Consensus 253 ---~v~~~~dl~~al~~---l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 253 ---SIKDIADLQLMLHE---LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---cCCCHHHHHHHHHH---hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 11122223222221 5678999999985 5544344555555554433 334578899998666665543
No 195
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.001 Score=67.09 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=62.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCC
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 140 (697)
.+.+++++++.||+|+|||.++..+..+.. ..+..++++. ...+..+ +.....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~-~~~L~~~-----l~~a~~-------------------- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTR-TTDLVQK-----LQVARR-------------------- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeee-HHHHHHH-----HHHHHh--------------------
Confidence 456788999999999999977766554432 2344555544 3333221 111000
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHHHHhhc
Q 005436 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
. .+...+++. +.+++++||||++....+ +.....+-.+.. ...+ +-+++|.-.+...+...|++
T Consensus 155 ~-----~~~~~~l~~------l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 155 E-----LQLESAIAK------LDKFDLLILDDLAYVTKD-QAETSVLFELISARYER-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred C-----CcHHHHHHH------HhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcCC
Confidence 0 022223332 356889999999943333 222222222222 2222 33555555667777777654
No 196
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0029 Score=67.01 Aligned_cols=124 Identities=23% Similarity=0.180 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+..++++||||+||||++..+........+.++ ++-.-+.+.++....++.++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 456889999999999999888764433334344 555666666666666666666655321
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHHHHh---CCCceEEEecccccHHHHHH
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRC---RSDLRLIISSATIEAKSMSA 213 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~~~~---~~~~~ii~~SAT~~~~~~~~ 213 (697)
.+.....+...+. -.++++||||=+. +.. +.+.+..+.+.+... .+.-.++.+|||...+.+.+
T Consensus 284 -~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 284 -PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred -ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 0111233444333 2568999999876 443 333333333332222 23356888999995544443
No 197
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0017 Score=73.91 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=80.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCC-CeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~-~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
++++.++||||+||||.+..+........+ .++ ++-+-+-++.+....+.+++..++++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 568899999999999888877654422333 244 44444566666555555666665432
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHHHH
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~~~ 214 (697)
.++.+++.+...+.. +.++++|+||=+- |+....-+...+..+.. ..+.-.++.+|||...+.+.+.
T Consensus 246 -~~~~~~~~l~~al~~---~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 -HAVKDAADLRFALAA---LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred -cccCCHHHHHHHHHH---hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 122356666555442 4577999999998 66544445555555543 4456678899999866655533
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.38 E-value=0.0011 Score=59.79 Aligned_cols=41 Identities=37% Similarity=0.407 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
++.+++.||+|+|||+++..++....... ..++++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEcc
Confidence 56899999999999988887776553221 245666555443
No 199
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.35 E-value=0.0019 Score=62.52 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=80.6
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhc---CCEEEEEcCCCChHHHH-HHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 42 IEKQRQRLPVYKYRTAILYLVET---HATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 42 ~~~~r~~lPi~~~q~~i~~~l~~---~~~~ii~apTGsGKT~~-lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
+.+...++=|++.|.++...+.+ +++.+.+.-.|.|||+. +|.+.+.. +++.+.+.++-|+.|..|...- +..
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~Ll~q~~~~-L~~ 91 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKALLEQMRQM-LRS 91 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHHHHHHHHHH-HHH
Confidence 55677889999999999998875 47899999999999955 56554433 3566677777788888764322 222
Q ss_pred HhCCcceeEEeeEeecCCcCCC----------------CCceEEEechHHHHHHHhc--------C-----------CCC
Q 005436 118 EMGVKVGEEVGYTIRFEDFTNK----------------DLTAIKFLTDGVLLREMMD--------D-----------PLL 162 (697)
Q Consensus 118 ~~~~~~~~~~g~~~~~~~~~~~----------------~~~~I~v~T~~~Ll~~l~~--------~-----------~~l 162 (697)
.+|.-++.. =|...|+..... ....|+++||+.++..... + .++
T Consensus 92 ~lg~l~~r~-i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l 170 (229)
T PF12340_consen 92 RLGGLLNRR-IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWL 170 (229)
T ss_pred HHHHHhCCe-eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222111111 133333332211 1456999999988753221 1 024
Q ss_pred CCCcEEEEeCCCc
Q 005436 163 TKYSVIMVDEAHE 175 (697)
Q Consensus 163 ~~~~~iIiDE~He 175 (697)
.+...=|+||+|+
T Consensus 171 ~~~~rdilDEsDe 183 (229)
T PF12340_consen 171 DEHSRDILDESDE 183 (229)
T ss_pred HhcCCeEeECchh
Confidence 4455568888884
No 200
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.35 E-value=0.0015 Score=73.53 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc---cCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEee
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~---~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~ 129 (697)
..|+..+.....++.++|+|++|+||||.+..++..... .....+.+++||.+.+. .+.+.+..... .. +.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~-rL~e~~~~~~~-~~----~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA-RLTESLGKALR-QL----PL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH-HHHHHHHhhhh-cc----cc
Confidence 567777777778899999999999999887766543211 11234566677765544 34333322111 00 00
Q ss_pred EeecCCcCCCCCceEEEechHHHHHHHhc-------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-------~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
. ..... .......|-..|+..... ......+++|||||+- +++...+..+++. ..++.|+|++
T Consensus 229 ~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlv 298 (615)
T PRK10875 229 T----DEQKK-RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFL 298 (615)
T ss_pred c----hhhhh-cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEe
Confidence 0 00000 001112333333322111 1113356899999997 5565555555553 4567788887
Q ss_pred cc
Q 005436 203 SA 204 (697)
Q Consensus 203 SA 204 (697)
.=
T Consensus 299 GD 300 (615)
T PRK10875 299 GD 300 (615)
T ss_pred cc
Confidence 63
No 201
>PF13173 AAA_14: AAA domain
Probab=97.30 E-value=0.0025 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAG 90 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~ 90 (697)
+++.++|.||.|+||||++-+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999998886653
No 202
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.30 E-value=0.0045 Score=67.68 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCeEEEEecCCCCHHHHhhccCCCC--CC-CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCH
Q 005436 308 SGLIILPLYSGLSRAEQEQVFSPTP--RG-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (697)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~v~~~f~--~g-~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~ 384 (697)
.+.....+||.....+|..+++.|. +| .+-.|++-...+.|+|+-+-+++|..|+ .|| |.=-
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLE 833 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALE 833 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHH
Confidence 3778889999999999999999884 34 5566677788899999999999987665 133 3334
Q ss_pred HhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 385 ASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 385 ~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
.++--|+=|.|-..+=..|++..+.+.+.
T Consensus 834 qQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 834 QQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred HHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 55667788888888888899888766554
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.0033 Score=60.33 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
+...+++||+|+||||.+-.++..... .+.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEec
Confidence 456899999999999888887765532 3455665543
No 204
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.27 E-value=0.00097 Score=66.25 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHhcCCE-EEEEcCCCChHHHHHHHHHHhc-------cccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHAT-TIIVGETGSGKTTQIPQYLKEA-------GWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~-~ii~apTGsGKT~~lp~~l~~~-------~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
+.+.|.+++..+.+... .+|.||+|||||+.+..++... ....+.++++++++...+.. +.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~-~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDN-ILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHH-HHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHH-HHHHHHh
Confidence 45678888888888887 9999999999997777666554 13455677888887766554 4444433
No 205
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.21 E-value=0.00024 Score=66.68 Aligned_cols=119 Identities=16% Similarity=0.265 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC--ccccccCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN--IAETSLTLE 352 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~--i~e~Gvdip 352 (697)
.+|.+|||+++.+..+.+.+.+...... .++.+..- ...+...+++.|+++.--|++++. .+.+|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 4688999999999999998887543210 02222222 245677788888889999999998 999999999
Q ss_pred C--eEEEEecCcccceeecCC-----------C-CcccccccccCHHhHHHhhcccCCCCCcEE
Q 005436 353 G--IVYVVDSGFSKQRFYNPI-----------S-DIENLVVAPISKASARQRAGRAGRVRPGKC 402 (697)
Q Consensus 353 ~--v~~VId~g~~k~~~yd~~-----------~-~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~ 402 (697)
+ ++.||-.|++-...-|+. . ........+.......|-+||+=|...-.+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g 142 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYG 142 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcE
Confidence 6 778888777532222221 0 001112235556678899999999954433
No 206
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.0092 Score=64.27 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=69.8
Q ss_pred EEcCCCChHHHHHHHHHHhccccCC-CeEEEEECccHHHHHHHH--------HHHHHHhCCccee-EEe-eEeecCCcCC
Q 005436 70 IVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRRLAVQAVA--------SRVAEEMGVKVGE-EVG-YTIRFEDFTN 138 (697)
Q Consensus 70 i~apTGsGKT~~lp~~l~~~~~~~~-~~~Ivv~p~r~l~~~~~~--------~~~~~~~~~~~~~-~~g-~~~~~~~~~~ 138 (697)
..++||||||.++..++++. +.+| ...++.+....+...... +.+-.+ .+..+. .+. -.+..-+. .
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e-~i~~~d~~i~ikkvn~fse-h 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSE-NININDENIEIKKVNNFSE-H 78 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhh-hhhcCCceeeeeeecccCc-c
Confidence 35789999996666555543 2233 235666665555443211 111111 111111 011 00111111 2
Q ss_pred CCCceEEEechHHHHHHHhcCC-------CCCCCcE-EEEeCCCcCCcCh-----h------HHHHHHHHHHHhCCCceE
Q 005436 139 KDLTAIKFLTDGVLLREMMDDP-------LLTKYSV-IMVDEAHERSIST-----D------ILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~-------~l~~~~~-iIiDE~Her~~~~-----d------~l~~~l~~~~~~~~~~~i 199 (697)
.+...|.++|.+.|...+.+.. .+.+..+ .+-||+|+....+ | -+...+....+..++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 3368899999999987765432 1444555 4669999432221 1 123344444455666678
Q ss_pred EEeccccc
Q 005436 200 IISSATIE 207 (697)
Q Consensus 200 i~~SAT~~ 207 (697)
+..|||.+
T Consensus 159 lef~at~~ 166 (812)
T COG3421 159 LEFSATIP 166 (812)
T ss_pred ehhhhcCC
Confidence 88999984
No 207
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0057 Score=64.78 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCc--cccccCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI--AETSLTLE 352 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i--~e~Gvdip 352 (697)
....+||+.|+.-+-.++..++.+. .+....+|--.+...-.++-+.|-.|...|++-|.= .=+--+|.
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ik 621 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIK 621 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheec
Confidence 3456999999999999998888776 344444444344444445555677889999999964 34567899
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-----CCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-----RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-----~~G~~~~l~~~~~~~~ 413 (697)
+|+-||.+++ ++. |--.++.+.+.+|+.-. ..-.|-.||++-+...
T Consensus 622 GVk~vVfYqp--------P~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 622 GVKNVVFYQP--------PNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred ceeeEEEecC--------CCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHH
Confidence 9999998544 443 55567888888887433 2247889999865444
No 208
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.16 E-value=0.0043 Score=64.35 Aligned_cols=129 Identities=24% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+.++.++||+|+||||.+..+...... .++++.++ ..+.+.++.......+...++.+. .. . ... .+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~------~~--~-~~~-dp- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI------AQ--K-EGA-DP- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHHHHHHcCceEE------Ee--C-CCC-CH-
Confidence 567889999999999888766554432 34455444 455454443333334444443221 00 0 000 01
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-------hCCCceEEEecccccHHHHH
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-------CRSDLRLIISSATIEAKSMS 212 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-------~~~~~~ii~~SAT~~~~~~~ 212 (697)
.......+.. ....++++||||=+- |....+.+..-++.+.+ ..+.-.++.++||...+.+.
T Consensus 182 -----a~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 182 -----ASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred -----HHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 0111111110 113678999999998 55544444444444432 23556789999998444443
No 209
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.16 E-value=0.0021 Score=68.52 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH------hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHH
Q 005436 52 YKYRTAILYLV------ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (697)
Q Consensus 52 ~~~q~~i~~~l------~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~ 111 (697)
...|+++++.+ .++.++.|.|+-|+|||+++-.+..... ..++.++++-|..+|+..+
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhc
Confidence 45677776666 7788999999999999988877665432 2233455555656666544
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0066 Score=66.01 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCC-eE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~-~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
.++++.++||||+||||.+..+........+. ++ ++-.-+-++.+.+..+.+++.+|+.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~---------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA---------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------------
Confidence 45789999999999998888776544333332 34 4445566677666666667777653211
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHH
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~ 214 (697)
.-+...+...+. .+.+.++++||.+- |+.....+...+..+.... +.-.++.++||.....+.+.
T Consensus 319 ----~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i 384 (484)
T PRK06995 319 ----VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV 384 (484)
T ss_pred ----cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH
Confidence 001111111111 25677899999986 4433323333333333221 33367889999866655544
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.12 E-value=0.0024 Score=65.19 Aligned_cols=25 Identities=44% Similarity=0.616 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...++++||+|+||||++-.+....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3479999999999999888776554
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.0041 Score=64.70 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=25.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.++++++.||||+|||+++..+..+. ...+..+++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEE
Confidence 45889999999999998776555443 23344555554
No 213
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.02 E-value=0.007 Score=70.39 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=35.8
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~ 397 (697)
..+.|++-+.+.+|.|-|++-.+.-. ....|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l------------------~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKL------------------RSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEe------------------ccCCchHHHHHHhccceec
Confidence 68999999999999999988665531 1144566677999999997
No 214
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0036 Score=67.62 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHhcCC---EEEEEcCCCChHHHHHHHHHHhc
Q 005436 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 58 i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+++ .++++||.|+||||++-.+....
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344455554 36999999999998887766543
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.00 E-value=0.0093 Score=60.53 Aligned_cols=128 Identities=24% Similarity=0.295 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
.+.++++||+|+||||.+..+..... ..+.++.++ +-+-+..++.....+++..+..+- ... . .. .
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~-----~--~~-d-- 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQK-----E--GA-D-- 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCC-----C--CC-C--
Confidence 35788899999999987776655432 234455444 445556655444445555553211 000 0 01 0
Q ss_pred EEEech-HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hC------CCceEEEecccccHHHHH
Q 005436 144 IKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CR------SDLRLIISSATIEAKSMS 212 (697)
Q Consensus 144 I~v~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~------~~~~ii~~SAT~~~~~~~ 212 (697)
| ....+.+.. ....++++||||=+- |......+..-++.+.. .. ++-.++.++||...+.+.
T Consensus 139 -----p~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 139 -----PAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred -----HHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 1 111121111 113578999999998 44333333333443332 22 567789999998554443
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.96 E-value=0.013 Score=58.24 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=64.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
..+++.|++|+|||+++..+..... ..+..+++++ ...+. ..+...+.. . .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it-~~~l~-----~~l~~~~~~-----------------~-~---- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT-VADIM-----SAMKDTFSN-----------------S-E---- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-HHHHH-----HHHHHHHhh-----------------c-c----
Confidence 5799999999999977776655442 2344555553 22222 112111100 0 0
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHHhhc
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
.+...+++. +.++++|||||++... .+++-..++..+...+ .+-+-+++|.-++.+.+.+.+++
T Consensus 151 -~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 -TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred -ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123334433 4578999999999433 5555555665555533 22334455556677777777654
No 217
>PF05729 NACHT: NACHT domain
Probab=96.93 E-value=0.0035 Score=58.47 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=65.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccC--C--CeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWAD--G--GRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~--~--~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+.++|.|++|+|||+++..++....... . ...++....+..........+............+ . .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------~-~ 69 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA----------P-I 69 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh----------h-h
Confidence 4689999999999988877665432221 1 1345555555554432211122111100000000 0 0
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChh-----HHHHHHHHHHHh--CCCceEEEecccccHHHHHHH
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD-----ILLGLLKKIQRC--RSDLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d-----~l~~~l~~~~~~--~~~~~ii~~SAT~~~~~~~~~ 214 (697)
. ..+...+... .--++|||=++|...... .....+..+... .++.++++.|.+-....+.+.
T Consensus 70 ~-------~~~~~~~~~~----~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~ 138 (166)
T PF05729_consen 70 E-------ELLQELLEKN----KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR 138 (166)
T ss_pred H-------HHHHHHHHcC----CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh
Confidence 0 0121222221 223589998887654332 244455555544 678888888776665556665
Q ss_pred hhc
Q 005436 215 FHA 217 (697)
Q Consensus 215 ~~~ 217 (697)
+..
T Consensus 139 ~~~ 141 (166)
T PF05729_consen 139 LKQ 141 (166)
T ss_pred cCC
Confidence 554
No 218
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.92 E-value=0.0022 Score=65.83 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHH----HHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccC---CCeEEEEECccHHHHHH
Q 005436 52 YKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQA 110 (697)
Q Consensus 52 ~~~q~~----i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~---~~~~Ivv~p~r~l~~~~ 110 (697)
++.|.+ +.+++.+++++++.||||+||| +++|.+........ +.++++++++..+..+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHH
Confidence 667766 6667788999999999999999 44443322111111 23789999988875543
No 219
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.92 E-value=0.0022 Score=65.83 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHH----HHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccC---CCeEEEEECccHHHHHH
Q 005436 52 YKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQA 110 (697)
Q Consensus 52 ~~~q~~----i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~---~~~~Ivv~p~r~l~~~~ 110 (697)
++.|.+ +.+++.+++++++.||||+||| +++|.+........ +.++++++++..+..+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHH
Confidence 667766 6667788999999999999999 44443322111111 23789999988875543
No 220
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.90 E-value=0.0084 Score=64.21 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=69.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.++.++|++|+||||.+..+..... ..+.++ ++-+-+.+.++....+..++..++++... + . ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~--~-------~---~~-- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGS--Y-------T---ES-- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEee--c-------C---CC--
Confidence 4688999999999988776654432 223344 44455555555544444455444332100 0 0 00
Q ss_pred EEechHHHH-HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccc--cHHHHHHHhh
Q 005436 145 KFLTDGVLL-REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI--EAKSMSAFFH 216 (697)
Q Consensus 145 ~v~T~~~Ll-~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~--~~~~~~~~~~ 216 (697)
.|-.+. +.+... .-..+++||||=+. |....+-+..-+..+.. ..++..++.++||. +.....+-|.
T Consensus 166 ---dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 ---DPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred ---CHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 111111 111100 01468999999998 54333334444444433 45667788899997 3333444454
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.89 E-value=0.014 Score=63.05 Aligned_cols=121 Identities=27% Similarity=0.303 Sum_probs=65.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+...... .+.++ ++.+.+.+.++....+.++...+.++. +. .. ..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~~------~~---~~-- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---GD------PD---NK-- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---ec------CC---cc--
Confidence 47889999999999887766544322 23344 444555555554444445565554421 10 00 00
Q ss_pred EEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccH
Q 005436 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (697)
Q Consensus 145 ~v~T~~~-Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~ 208 (697)
.+.. +.+.+.. +...++||||.+- |....+-++.-++.+.. ..++..++.++||...
T Consensus 161 ---d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 161 ---DAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ---CHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 1112 2222221 2235899999997 33333333333444333 4567778888998743
No 222
>PRK08727 hypothetical protein; Validated
Probab=96.88 E-value=0.0037 Score=62.15 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.+.+++.||+|+|||.++-.+.... ...+.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEe
Confidence 3569999999999997776655443 22344555554
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.88 E-value=0.0049 Score=63.08 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCC-CeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~-~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
+++++++||||+||||.+..+........+ .++ ++-+-+-+..+.......+...++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 458899999999999888777655433212 344 444445455444444444555444321
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCC
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEA 173 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~ 173 (697)
...++..+...+.. +.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~~---~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALDR---LRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHHH---ccCCCEEEEeCC
Confidence 11234444444332 356899999975
No 224
>PRK08116 hypothetical protein; Validated
Probab=96.85 E-value=0.026 Score=57.27 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
+..+++.|++|+|||+++..+..+.. ..+..++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~-~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI-EKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 34599999999999977776555432 2244455444
No 225
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.84 E-value=0.007 Score=69.59 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=93.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC--cEEEEecCccccccCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTL 351 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~--~kilvaT~i~e~Gvdi 351 (697)
..+..+|||..-.+...-+...|+-+ ++.-+.+.|...-++|+..++.|.... ...|++|-..+.|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 35778999988777666666666543 888999999999999999999997653 4578999999999999
Q ss_pred CCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 352 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
-+.+.||. ||...+ |.=-+++.-|.-|.|+++.=..|||+++...+.
T Consensus 1345 tgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 99999997 555433 444566777888888889999999999887655
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=96.81 E-value=0.0085 Score=60.46 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
+.++.++++.||+|+|||+++..+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 56788999999999999988776654432 2344555543
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=96.80 E-value=0.012 Score=63.33 Aligned_cols=123 Identities=23% Similarity=0.274 Sum_probs=67.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCe-EEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~-~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+........+.+ .++-+-+.+.++....+.+++..++++... + . .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~-~--------~---~--- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS-G--------D---G--- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec-C--------C---C---
Confidence 4688999999999988776665433221333 456666777766544444555555443110 0 0 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccc
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~ 206 (697)
..|..+............+++||||=+- |....+.+...+..+.. ..++--++.++|+.
T Consensus 166 --~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 --QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1233333222111123568999999998 44333333344444333 34555577888887
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.80 E-value=0.0027 Score=60.15 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=56.0
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCC
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (697)
.+.+.+++++++.||+|+|||+++..+..+... .+..++++. ...|... +.... ..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~-~~~L~~~-----l~~~~--------------~~--- 96 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT-ASDLLDE-----LKQSR--------------SD--- 96 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE-HHHHHHH-----HHCCH--------------CC---
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee-cCceecc-----ccccc--------------cc---
Confidence 344567899999999999999777666554432 444555544 4344321 11100 00
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHHHHhhc
Q 005436 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
. +.+.+++. +.+++++||||+--... ++.....+-.+.. ...+..+|+ |.-++.+.+.+.+++
T Consensus 97 ~--------~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 97 G--------SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGD 160 (178)
T ss_dssp T--------THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT----
T ss_pred c--------chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhcccc
Confidence 0 11223333 34679999999973222 2333333333333 222234554 445677778887775
Q ss_pred C
Q 005436 218 R 218 (697)
Q Consensus 218 ~ 218 (697)
.
T Consensus 161 ~ 161 (178)
T PF01695_consen 161 R 161 (178)
T ss_dssp -
T ss_pred c
Confidence 3
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.019 Score=57.72 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCC
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED 135 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 135 (697)
....+.+.++.++++.||+|+|||+++..+..+.. ..+..++++ +..++..+ +...++. |
T Consensus 96 ~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~-----Lk~~~~~------~------- 155 (254)
T COG1484 96 ASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSK-----LKAAFDE------G------- 155 (254)
T ss_pred HHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHH-----HHHHHhc------C-------
Confidence 34455566889999999999999988776666654 334444544 44444332 2222110 0
Q ss_pred cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC---hhHHHHHHHHHHHhCCCceEEEecccccHHHHH
Q 005436 136 FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSDLRLIISSATIEAKSMS 212 (697)
Q Consensus 136 ~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~ 212 (697)
...+.|.+. +.+++++||||.--.... .+.+..++......+ .. ++|.-.+.+.+.
T Consensus 156 -----------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~ 214 (254)
T COG1484 156 -----------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWD 214 (254)
T ss_pred -----------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHH
Confidence 012345543 467899999998832222 233333333332222 22 555555666666
Q ss_pred HHhhc
Q 005436 213 AFFHA 217 (697)
Q Consensus 213 ~~~~~ 217 (697)
+.|+.
T Consensus 215 ~~~~~ 219 (254)
T COG1484 215 ELFGD 219 (254)
T ss_pred hhccC
Confidence 66653
No 230
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.011 Score=66.83 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+++.....+.-.+++++||||+|. +.......++|.+..-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334434444456789999999993 34455666777655555566666654
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.0091 Score=59.37 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
..++++||+|+|||.++-.+..+. ...+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEee
Confidence 568999999999998766554332 22344555554
No 232
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.013 Score=65.96 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=29.9
Q ss_pred hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 157 MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 157 ~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
...+...+++++||||+|. +.......+++.+.......++|+.+
T Consensus 112 ~~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 112 QYAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred HhhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3345567889999999993 34445556666665555666676655
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.0095 Score=55.25 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
++|.|++|+|||+++-.++..... .++.++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchH
Confidence 689999999999888877765533 456677777665543
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=96.66 E-value=0.0073 Score=59.89 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.+..+++.||+|+|||.++-.+..+... .+.+++++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEee
Confidence 3456899999999999877766655422 233455544
No 235
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.0085 Score=67.57 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
+...+...+....+.++||||+|. ++......++|.+-.-.+..++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 344444445566889999999993 4455667777766554455566654
No 236
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.016 Score=54.77 Aligned_cols=124 Identities=23% Similarity=0.311 Sum_probs=59.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccccCCCeEE-EEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~I-vv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
.+++.|++|+|||+....+...... .+.+++ +-..+++..........+...+..+.. . .. ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~--------~~--~~--- 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--E--------GE--GK--- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--c--------CC--CC---
Confidence 5788999999999887666554322 233443 334555443322222223333322110 0 00 01
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHH
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAK 209 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~ 209 (697)
.+..++..........++++||+|..+....+.+.+ ..+..+.. ..++..++.++|....+
T Consensus 66 --~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 66 --DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCCChH
Confidence 122222111111113468899999998333333333 33333333 23566677788765433
No 237
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.045 Score=54.56 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
...+++.||+|+|||+++..+..... ..+..+++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEE
Confidence 46899999999999977776655443 2334445443
No 238
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.013 Score=65.45 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.+...++.++||||+|. ++......+++.+........+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh~--LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVHM--LSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 34456789999999993 34445555666555544556666644
No 239
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.024 Score=59.72 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCChHHHHHHHHHHhccccC---CCeEEEEECc-cHHHHHHHHHHHHHHhCCcceeEE
Q 005436 55 RTAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEAGWAD---GGRVIACTQP-RRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 55 q~~i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~~~~~~---~~~~Ivv~p~-r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
...+..++.+++ .++++||.|+|||+++-.+.....-.. ....-...|. .. ...+.++....-.+.. +
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c----~~c~~i~~~~hPdl~~-l 106 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS----PVWRQIAQGAHPNLLH-I 106 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC----HHHHHHHcCCCCCEEE-e
Confidence 345666677665 599999999999987766554321100 0000000010 00 1122222211111100 0
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
. ...+.........|.|-..-.+.+.+...+....+.+|||||+|. ++......+++.+..-..+..+|++|
T Consensus 107 ~--~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 107 T--RPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred e--cccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 000010000012333333333444444445567889999999994 45556666777776555556666665
No 240
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.59 E-value=0.0071 Score=60.25 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=31.1
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
...+..||+|||| ++..|...++.+.+-......++++..--
T Consensus 127 ~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 127 CPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 6678999999999 56667777766666665667788876643
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.56 E-value=0.0062 Score=60.63 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=25.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
....+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~ 80 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVP 80 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEE
Confidence 346899999999999988776655432 2344455543
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.043 Score=56.66 Aligned_cols=113 Identities=12% Similarity=0.194 Sum_probs=62.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
.++.+++.||+|+|||+++..+..+.. ..+..+.++.-+ .+. ..+....+. .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~-~l~-----~~lk~~~~~-------------------~-- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP-EFI-----RELKNSISD-------------------G-- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH-HHH-----HHHHHHHhc-------------------C--
Confidence 356899999999999988877666554 234445555544 222 112221110 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHH-HHHHHHHHhC--CCceEEEecccccHHHHHHHhh
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL-GLLKKIQRCR--SDLRLIISSATIEAKSMSAFFH 216 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~-~~l~~~~~~~--~~~~ii~~SAT~~~~~~~~~~~ 216 (697)
+.+..++. +.+++++||||+.--.. +++.. .++..+...| .... .++|.-++.+.+.+.|.
T Consensus 207 ----~~~~~l~~------l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 ----SVKEKIDA------VKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHLA 270 (306)
T ss_pred ----cHHHHHHH------hcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHh
Confidence 11223332 46789999999983322 33332 3444443322 3334 45555667777877773
No 243
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.56 E-value=0.014 Score=63.24 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=20.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+++|+||+|+|||+++-.++.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998887766543
No 244
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.012 Score=65.49 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+++.+...+...+++++||||+|. ++......++|.+..-..+.++|+.|
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 333333444567789999999993 44556667777665555566666655
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.49 E-value=0.014 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+..+++.||+|+|||+++-.+....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999998887666543
No 246
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.49 E-value=0.015 Score=57.66 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=25.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
..++.++++||+|+|||+++..+..... ..+..++++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~ 77 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLD 77 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 3457899999999999988776655432 2333445444
No 247
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.015 Score=66.95 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=31.3
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
...+...+.-.++.++||||+|. +..+....+++.+-.-..++++|+.
T Consensus 108 ie~v~~~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 108 LDNVQYRPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred HHHHHhhhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33333344456789999999993 4556667777766655556666664
No 248
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.43 E-value=0.031 Score=60.28 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCe-EEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~-~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+........+.+ .++-+-+++.++....+..+...+.++.. . . . .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~--~------~-~-~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA--L------G-K-G----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe--c------C-C-C-----
Confidence 3688999999999988777665432122333 35566666666554444455555543211 0 0 0 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccc
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~ 206 (697)
..|..+............+++||||=+- |....+.+...+..+.. ..++-.++.++||.
T Consensus 165 --~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 --QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0122222111111113568999999998 44333334444444443 34555677788886
No 249
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.42 E-value=0.0039 Score=59.87 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEECcc
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPR 104 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~p~r 104 (697)
|....|...++++.+.+.+++.||.|||||+++-...++.... .-.++|++-|+-
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 7788999999999999999999999999997665554443222 224566666654
No 250
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.42 E-value=0.026 Score=59.61 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHhc
Q 005436 55 RTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 55 q~~i~~~l~~~~--~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+.+...+.+++ .+++.||+|+|||+++-.+..+.
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344455555555 79999999999998887666543
No 251
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.41 E-value=0.035 Score=56.13 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=61.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCC-----CeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADG-----GRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK 139 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~-----~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 139 (697)
.+++|+|+||-|||+++..+...+..... .+++++ +|+. -....+...+...++.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~-p~~~~~Y~~IL~~lgaP~~~-------------- 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE-PDERRFYSAILEALGAPYRP-------------- 126 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC-CChHHHHHHHHHHhCcccCC--------------
Confidence 67999999999999999888765432211 123333 3332 22224555566666655321
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC----hhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS----TDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~----~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
...+.-.+ ...++.+. --++.++||||+|..... ..-.+..+|.+.+. -++.+|++ .|.
T Consensus 127 -~~~~~~~~-~~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 127 -RDRVAKLE-QQVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred -CCCHHHHH-HHHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 00000001 11122222 236789999999942211 12344555555332 24556655 354
No 252
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.014 Score=62.13 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+......++||||+|.. ..+....+++.+....+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~l--~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHML--SRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhhc--CHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 4444444555667899999999943 3334445565555444556666643
No 253
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.38 E-value=0.021 Score=62.78 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=23.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~ 101 (697)
+.+++.||+|+|||+++-.+..+.... .+..++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 458999999999997776555443221 133455554
No 254
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.023 Score=62.95 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=31.4
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+..+...+.-.+++++||||+|. +..+....+++.+..-.+..++|+.+
T Consensus 108 ~~~~~~~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 108 LDNIPYAPTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred HHHHhhccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 33333445566889999999993 44455666776655555566666644
No 255
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.023 Score=62.64 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
+.......+...++.++||||+|.. .......+++.+....+...+|+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~L--s~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHML--SKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhhc--CHHHHHHHHHHHhhcCCCEEEEE
Confidence 4444455667788999999999943 33445555555544334444444
No 256
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.028 Score=61.55 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+.......|...++.++||||+|. +.......+++.+..-.+...+|+.+
T Consensus 104 Iie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 104 ILENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334444556678899999999993 34445556666665555556666544
No 257
>PRK06921 hypothetical protein; Provisional
Probab=96.31 E-value=0.064 Score=54.32 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.+..+++.|+||+|||+++..+..+.....+..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46789999999999998877665544321144556655
No 258
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.24 E-value=0.0059 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005436 68 TIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+++.||+|+|||+++-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887766554
No 259
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.23 E-value=0.024 Score=61.53 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=22.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~ 101 (697)
..+++.||+|+|||+++-.+..+.... .+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 458999999999997775544433211 134456654
No 260
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.025 Score=62.82 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.++..+...+...++.++||||+|. ++.+....+++.+..-.....+|+.+
T Consensus 106 ~ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 106 EILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3445555555667889999999994 34445555666555444556666644
No 261
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.22 E-value=0.02 Score=61.32 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..++|.||+|+|||+++-.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999977766554
No 262
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.20 E-value=0.00096 Score=66.88 Aligned_cols=53 Identities=28% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE---ECccHHHHH
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC---TQPRRLAVQ 109 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv---~p~r~l~~~ 109 (697)
+.++.-.+.+.-++++|||||||||.+..+.++... ++-..+.+ .|..+|+..
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~-QGVnTLwgSFEi~n~rla~~ 319 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT-QGVNTLWGSFEIPNKRLAHW 319 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHHHHh-hhhhheeeeeecchHHHHHH
Confidence 444555567788999999999999988888776532 34344444 355566554
No 263
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.19 E-value=0.011 Score=64.48 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
+...|..+++++.++...+|+||+|+|||.....+++.......+++++|+|. .+|.+++++.+-+ .|+++..
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApS-NiAVDqLaeKIh~-tgLKVvR 483 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPS-NIAVDQLAEKIHK-TGLKVVR 483 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEccc-chhHHHHHHHHHh-cCceEee
Confidence 77889999999999999999999999999444444443333345667777665 5666677765543 3455543
No 264
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.19 E-value=0.027 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
..++++.||+|+|||+++-.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999997776554
No 265
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.17 E-value=0.29 Score=55.73 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=72.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHH---hCCcceeEEeeEeecCC-cCCCCC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFED-FTNKDL 141 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~-~~~~~~ 141 (697)
+.++++|.=|=|||..+-..+.......+...|+||-|...+.+.+.++..+. +|.+.. +......+. ....+.
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~--v~~d~~g~~~~~~~~~ 309 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRK--VAPDALGEIREVSGDG 309 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccc--cccccccceeeecCCc
Confidence 38999999999999777644432211111224666666666777666654433 332211 011100000 111124
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc-----cHHHHHHHhh
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI-----EAKSMSAFFH 216 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~-----~~~~~~~~~~ 216 (697)
..|-|..|.... . .-+++|||||= .+...++..++.. .+.++||.|+ ....|.-.|.
T Consensus 310 ~~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~~~-------~~rv~~sTTIhGYEGtGRgF~lkf~ 371 (758)
T COG1444 310 FRIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLLRR-------FPRVLFSTTIHGYEGTGRGFSLKFL 371 (758)
T ss_pred eeEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHHhh-------cCceEEEeeecccccCChHHHHHHH
Confidence 557888887543 1 26899999997 4444444444432 2468899998 3344554443
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.14 E-value=0.046 Score=62.59 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.2
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
.+.|.|+||+|||..+-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999996665444
No 267
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.14 E-value=0.0039 Score=58.23 Aligned_cols=117 Identities=23% Similarity=0.274 Sum_probs=50.5
Q ss_pred EEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEee------cCCcCCCCCc
Q 005436 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIR------FEDFTNKDLT 142 (697)
Q Consensus 69 ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~ 142 (697)
||+|+-|-|||+.+-..+.........+ |+|+-|..-+.+.+.+.....++ ..||... ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~-I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIR-ILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCce-EEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccc
Confidence 6899999999988887665443222223 55555555555555554332221 1121110 0001111256
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
.|.|..|+.+... -...+++|||||= .+.... ++.+... ...+++|.|+
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~----L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA--AIPLPL----LKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG--GS-HHH----HHHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh--cCCHHH----HHHHHhh---CCEEEEEeec
Confidence 7889999877532 2245899999996 444333 3443322 3366778887
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.048 Score=59.64 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=23.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEEC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQ 102 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p 102 (697)
+.+++.|++|+|||+++-.+..+... ..+.++++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45889999999999777555443221 23445555544
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.045 Score=51.50 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=61.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCC-
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD- 140 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 140 (697)
+..++.+.|.||.||||||++-.+.-.... ..+.+. + .-..+.... ...... .+||...........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~-~-~g~~~~~~~-~~~~~~--------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEIL-I-DGVDLRDLD-LESLRK--------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEE-E-CCEEhhhcC-HHHHHh--------hEEEEcCCchhccchH
Confidence 457899999999999999988877654332 234332 2 222221100 000111 123221110000000
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
..++ .+.|.-.+.........+.+++++||-= .+++......+.+.+.....+..+|+.
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~~tii~~ 151 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKGKTVIVI 151 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0011 3444433333333345677999999976 566666555555555544334333333
No 270
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.032 Score=52.94 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=62.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcC--CC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFT--NK 139 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~ 139 (697)
+..++.+.|.||.||||||++-.+.-.... ..+.+. + .-..+... ...+.. .+||........ +.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~-~-~g~~~~~~--~~~~~~--------~i~~~~q~~~~~~~tv 91 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEIT-L-DGVPVSDL--EKALSS--------LISVLNQRPYLFDTTL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEE-E-CCEEHHHH--HHHHHh--------hEEEEccCCeeecccH
Confidence 457899999999999999988876654332 234332 2 22233211 111111 123221110000 00
Q ss_pred CCce-EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 140 DLTA-IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 140 ~~~~-I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+ +.-.+.|...+.......+.+.+++++||.= .+++......+...+.....+.-+|+.|
T Consensus 92 -~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 92 -RNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred -HHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 000 1223334443333333346677999999987 4566655555555554443344444444
No 271
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.07 E-value=0.012 Score=61.27 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH---HhccccCCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l---~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
.+.|.+++.. .++.++|.|+.|||||+.+..-+ +........+++++|.+++.+. .+..++...+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~-e~~~ri~~~l 69 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQ-EMRERIRELL 69 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHH-HHHHHHHHhc
Confidence 4567777777 67779999999999996654332 2222123456888998887654 5566666644
No 272
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.05 E-value=0.0062 Score=70.35 Aligned_cols=105 Identities=27% Similarity=0.289 Sum_probs=65.5
Q ss_pred CEEEEEcCCCChHHH--HHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 66 ATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 66 ~~~ii~apTGsGKT~--~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+--|....||=|||. .+|.++... .|..+-+||..--||.. ++..-+...+|+.+|.........+....- .
T Consensus 152 ~G~IAEM~TGEGKTLvatlp~yLnAL---~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY-~ 227 (1025)
T PRK12900 152 SGKISEMATGEGKTLVSTLPTFLNAL---TGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQY-L 227 (1025)
T ss_pred cCCccccCCCCCcchHhHHHHHHHHH---cCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhC-C
Confidence 334889999999993 345555433 34445566666666655 455557788888887653321122222223 7
Q ss_pred ceEEEechHH-----HHHHHhcCC---CCCCCcEEEEeCCC
Q 005436 142 TAIKFLTDGV-----LLREMMDDP---LLTKYSVIMVDEAH 174 (697)
Q Consensus 142 ~~I~v~T~~~-----Ll~~l~~~~---~l~~~~~iIiDE~H 174 (697)
++|+|+|..- |.+.+...+ ..+.+.+.|||||+
T Consensus 228 ~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 228 CDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 8999999854 333333322 36788999999999
No 273
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.05 E-value=0.074 Score=54.17 Aligned_cols=134 Identities=28% Similarity=0.298 Sum_probs=80.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|-.|+||||.+..+...... .+.++ |.-.-|-|.++....+..++..|+.+... . ...+...|
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~-------~--~G~DpAaV 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG-------K--EGADPAAV 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc-------C--CCCCcHHH
Confidence 36788999999999888877665432 34444 45556767777655555666666654321 0 11112333
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCc------eEEEecccc--cHHHHHHHh
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDL------RLIISSATI--EAKSMSAFF 215 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~------~ii~~SAT~--~~~~~~~~~ 215 (697)
+|-.-+... -+++++|++|=|- |.-+..-++.-++++.+ ..+.. .++.+-||. |.-.-++.|
T Consensus 210 afDAi~~Ak--------ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 210 AFDAIQAAK--------ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred HHHHHHHHH--------HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 333333222 4689999999999 66555555565666555 33332 456668998 444445666
Q ss_pred hcC
Q 005436 216 HAR 218 (697)
Q Consensus 216 ~~~ 218 (697)
+..
T Consensus 281 ~ea 283 (340)
T COG0552 281 NEA 283 (340)
T ss_pred HHh
Confidence 654
No 274
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.03 E-value=0.049 Score=52.17 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
.+.+...+......+|||||+|.. ..+....+++.+....++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l--~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERM--NEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhh--CHHHHHHHHHHhcCCCCCeEEEEE
Confidence 455556666778899999999943 333444455555443344445544
No 275
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.02 E-value=0.016 Score=59.75 Aligned_cols=52 Identities=33% Similarity=0.394 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHH
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRL 106 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l 106 (697)
.+.+..++..+.+++|+|+|||||||++..++..... ....+++.+-.+.++
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3445666778889999999999999998776654322 123456666666555
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.00 E-value=0.04 Score=50.21 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=54.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+..++.+.|.||.|+||||++-.+.-.... ..+. |.+- -+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~-~~--------------------~~i~~~~~--------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGI-VTWG-ST--------------------VKIGYFEQ--------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceE-EEEC-Ce--------------------EEEEEEcc---------
Confidence 457889999999999999888766544322 2232 2221 10 12333211
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~ 193 (697)
.+.|...+.........+.+++|+||-= ..++.+....+.+.+...
T Consensus 71 -----lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 -----LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 3444444433333345677899999987 456665555555544443
No 277
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.00 E-value=0.016 Score=66.11 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 50 PVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~-~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
.+...|.+++.....+ +.++|.||+|+|||+.+..++.... ..+.++++++|+...+ ..+.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~sn~Av-d~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPSNIAV-DNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCcHHHH-HHHHHHHHh
Confidence 4567777777766655 8899999999999977766655432 2345677777776554 456665544
No 278
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.032 Score=61.18 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=22.1
Q ss_pred HHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 005436 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 58 i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+...+.+++ .++++||+|+||||++-.+...
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455543 3699999999999888766554
No 279
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.036 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.|++|+||||++-.+...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357789999999999999888776544
No 280
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.043 Score=60.74 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
+...+...+......+|||||+|. ...+.+..+++.+....+...+|+.
T Consensus 104 l~~~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 104 LREKVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHHHHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333344445677889999999993 3344555566665544444444443
No 281
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.93 E-value=0.034 Score=59.74 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhcc
Q 005436 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAG 90 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~~ 90 (697)
|.....+.+.+..+.+ +.-++++|||||||||.+..++....
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 4445555444444433 46789999999999988888777653
No 282
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.047 Score=61.24 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETH---ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+..++.++ ..+|++||.|+|||+++-.+...
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3344445554 45889999999999877765543
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.059 Score=60.80 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+....+.+|||||+|. ++......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444555566778899999999994 33445556666655555666777654
No 284
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.90 E-value=0.023 Score=55.85 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~ 101 (697)
+.++|.||+|+|||.++-.+..+... .++.+++++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 45899999999999776655443221 1344555554
No 285
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.062 Score=57.00 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=41.2
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
..|.|-..-.+.+.+...+......+|||||+|. .+......+++.+.+-.++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4465555555555555556677889999999993 45566677777776554556566655443
No 286
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.82 E-value=0.044 Score=51.00 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=39.7
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
|.+-....+...+...+.-..+.++|||||| .++.+...+++|.+-.-..+..+|++|-.+
T Consensus 82 i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 82 IKIDQIREIIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp BSHHHHHHHHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333334455555555556789999999999 456667777787777666777777776554
No 287
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.065 Score=59.83 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+...+...|......++||||||. +.......+++.+-.-.+...+|+++
T Consensus 105 ReIi~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 105 RNIIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 34444445556667789999999993 33344445555554444455555544
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.064 Score=59.93 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=32.3
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
++......+...++.++||||+|.. .......+++.+........+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~l--s~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHML--SKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCcccC--CHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4444445566778899999999943 3344556666665555566666654
No 289
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.053 Score=58.53 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 005436 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 57 ~i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++.+++ .++++||.|+|||+.+-.+...
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 3444555553 3889999999999877766543
No 290
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.77 E-value=0.035 Score=64.21 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECccHHHHHHH-HHHHHHHhCCcc
Q 005436 51 VYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAV-ASRVAEEMGVKV 123 (697)
Q Consensus 51 i~~~q~~i~~~l----~~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r~l~~~~~-~~~~~~~~~~~~ 123 (697)
+..||..=+..+ +++-|-|+.-.-|-|||.|.-.++...+-. .-|.-+||+|+..+...++ .+|++ -|.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwc--PglKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWC--PGLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhC--CcceE
Confidence 556776555544 567788999999999995544333322111 2245689999988876533 22222 25566
Q ss_pred eeEEeeEee----cCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceE
Q 005436 124 GEEVGYTIR----FEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 124 ~~~~g~~~~----~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~i 199 (697)
-.+.|-... .......+.-+|.|+++..+++-+.. ..-.++.++|+||+|..- + +-...+.-++..+. -|.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqnIK-n--fksqrWQAllnfns-qrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQNIK-N--FKSQRWQALLNFNS-QRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhhhc-c--hhHHHHHHHhccch-hhe
Confidence 666663211 11222233678888888877654432 114678999999999322 1 21222222333333 345
Q ss_pred EEecccc
Q 005436 200 IISSATI 206 (697)
Q Consensus 200 i~~SAT~ 206 (697)
++++.|+
T Consensus 769 LLLtgTP 775 (1958)
T KOG0391|consen 769 LLLTGTP 775 (1958)
T ss_pred eeecCCc
Confidence 6667775
No 291
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.76 E-value=0.33 Score=54.44 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh---CC-----cceeEE
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM---GV-----KVGEEV 127 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~---~~-----~~~~~~ 127 (697)
+++++.. +.+-.++.+|=|.|||+.+-.++.......+.++++.+|.... ++++.+++...+ +. ..+..+
T Consensus 179 d~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~t-s~evF~rv~~~le~lg~~~~fp~~~~iv 256 (752)
T PHA03333 179 DRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTM-CLTLYNRVETVVHAYQHKPWFPEEFKIV 256 (752)
T ss_pred HHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhh-HHHHHHHHHHHHHHhccccccCCCceEE
Confidence 3444444 4456888899999999766544433222134455555554444 444444433322 21 111111
Q ss_pred ---e--eEeecCCc--CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEE
Q 005436 128 ---G--YTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (697)
Q Consensus 128 ---g--~~~~~~~~--~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii 200 (697)
| ..+.+... ...+...|.+++... +..--..++++|+|||+. +..+.+..++-.+.. .+.+++
T Consensus 257 ~vkgg~E~I~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~I 326 (752)
T PHA03333 257 TLKGTDENLEYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQI 326 (752)
T ss_pred EeeCCeeEEEEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceE
Confidence 1 01111111 110114555544331 111124579999999994 444566665544433 367789
Q ss_pred EecccccHHHHHHHhhc
Q 005436 201 ISSATIEAKSMSAFFHA 217 (697)
Q Consensus 201 ~~SAT~~~~~~~~~~~~ 217 (697)
++|.+-+.+.+..++.+
T Consensus 327 iISS~~~~~s~tS~L~n 343 (752)
T PHA03333 327 HISSPVDADSWISRVGE 343 (752)
T ss_pred EEeCCCCcchHHHHhhh
Confidence 99988878877777765
No 292
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.76 E-value=0.059 Score=60.17 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=23.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~ 101 (697)
+.++|.|++|+|||.++-.+..+.... .+.+++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 348999999999998777665544321 234555544
No 293
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.052 Score=60.95 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+....+.++||||+|. +..+....+++.+-.-.....+|+.+
T Consensus 106 l~~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 106 LRDRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 333444455677899999999993 45556666776666555566666655
No 294
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.054 Score=61.52 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=28.7
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
...+...+......+|||||+|. +..+....+++.+..-.+...+|+.
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 34444556677899999999993 3344455555554443344444443
No 295
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.019 Score=66.87 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=39.8
Q ss_pred cHHHHHH----HHHHHhcCCEEEEEcCCCChHH-HHHHHHHHhcc-ccCCCeEEEEECccHHHHH
Q 005436 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT-TQIPQYLKEAG-WADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 51 i~~~q~~----i~~~l~~~~~~ii~apTGsGKT-~~lp~~l~~~~-~~~~~~~Ivv~p~r~l~~~ 109 (697)
+|+.|.+ +.+++.++++.++.+|||+||| .++...+.... .....++++++.|..-..|
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQ 75 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHH
Confidence 4556654 5666788999999999999999 33333332211 1123578999998887776
No 296
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.081 Score=51.71 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 57 AILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 57 ~i~~~l~~~~-~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
.+-.++..++ .+.++|+-|||||+..- .+.+. ...+..++++.+-..+....+..++...+.
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s-~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRR-ALLAS-LNEDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHH-HHHHh-cCCCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 3455566676 89999999999997766 43333 223334455556666666666666555543
No 297
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.036 Score=62.50 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
++......+....++++||||+|. ++.+....+++.+..-.....+|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 444444556667899999999993 44445555665554444455666544
No 298
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.088 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=16.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++|.|+||+|||..+-..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~ 64 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVME 64 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHH
Confidence 4699999999999955544433
No 299
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.70 E-value=0.02 Score=59.99 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=33.3
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
+-.++..+.+++|+|||||||||++..++.... ...+++.+-.+.++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~--~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP--PQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC--CCCCEEEECCCccc
Confidence 445567789999999999999999877664432 33455665566554
No 300
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.70 E-value=0.11 Score=56.91 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=23.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~ 101 (697)
+.+++.||+|+|||.++-.+..+.... .+.+++++.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 459999999999997776554432211 234556665
No 301
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.054 Score=61.55 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
..+...+...+....+.++||||+|. +..+....+++.+..-.....+|+
T Consensus 107 Reii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 107 RELIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 33444445555667889999999994 334455555655554334444444
No 302
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.058 Score=63.07 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=31.6
Q ss_pred HHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 155 EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 155 ~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.+...+...+++++||||+|. ++.+....+++.+........+|+.+
T Consensus 111 ~~~~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 111 RAFFAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHhchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 333445567899999999993 44556666776666655666666654
No 303
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.077 Score=60.01 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.+...+...+...++.++||||+|. ++.+....+++.+-.-.++..+|+.+
T Consensus 106 ~l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 106 ELRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 3444455556678899999999993 34445556666655544556666544
No 304
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.66 E-value=0.24 Score=50.39 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=71.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-----ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCC
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-----TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-----~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 138 (697)
+.+.+++.||-|||||+++.-.+.+ ....+.+.++| .++-.+|.....+.++.+.... +...|- .+
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs-------ft 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS-------FT 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc-------cc
Confidence 4577999999999999877766665 22223333333 2333444445555555555322 122220 00
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCC-cEEEEeCCCcCC--cChhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 139 KDLTAIKFLTDGVLLREMMDDPLLTKY-SVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~~l~~~-~~iIiDE~Her~--~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
+ +-..|+..+..+..-... -.+|+||++-.. .+.-.+..+.......+.++-++++|--+|.-
T Consensus 119 e--------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 119 E--------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred h--------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 0 124556555555444444 356778887322 22234555555555567788889998887654
No 305
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.66 E-value=0.026 Score=58.45 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHH
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRL 106 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l 106 (697)
+.+..++..+.+++|+|+|||||||++-.++..... ....+++.+-.+.++
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 445666777889999999999999988766544321 123455555556555
No 306
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.62 E-value=0.017 Score=58.85 Aligned_cols=47 Identities=32% Similarity=0.442 Sum_probs=32.7
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
..+++.+.+++++|+|||||||++..++..... ...+++++-.+.++
T Consensus 121 ~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 121 RSAVRGRGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIEDPPEL 167 (270)
T ss_dssp HHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEESSS-S
T ss_pred hhccccceEEEEECCCccccchHHHHHhhhccc-cccceEEeccccce
Confidence 334466799999999999999999777654432 22566666666555
No 307
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.59 E-value=0.057 Score=53.75 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=32.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+..+..++|.|++|+|||++..+++.+... ++.++++++--..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 345788999999999999988888776532 4667787776443
No 308
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.09 Score=58.20 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=29.8
Q ss_pred CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.|....+.++||||+|. +..+...++++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45567899999999993 34556666666666555566666654
No 309
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.57 E-value=0.048 Score=53.87 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.1
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 56 ~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+.+.+.+ ++.++|.||-|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4889999999999999888777654
No 310
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.55 E-value=0.027 Score=58.41 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc-ccCCCeEEEEECccHH
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRL 106 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~-~~~~~~~Ivv~p~r~l 106 (697)
+.+..++..+.+++|+|+|||||||++-.++.... .....+++.+-.+.++
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 44555678889999999999999988876654321 1233456666666655
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.52 E-value=0.065 Score=49.99 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=64.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+..++.+.|.||.|+||||++-.+.-.... ..+.+ .+ .-..+......+ ... ..+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v-~~-~g~~~~~~~~~~----~~~----~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEI-LV-DGKEVSFASPRD----ARR----AGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEE-EE-CCEECCcCCHHH----HHh----cCeEEEEe---------
Confidence 468899999999999999998876544322 23332 22 111111000000 000 11233211
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHHh
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~~ 215 (697)
.+.|...+......+..+.+++++||-= .+++.+....+...+.... .+.-+|+.| -+.+.+.++.
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~s--h~~~~~~~~~ 149 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFIS--HRLDEVFEIA 149 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHhC
Confidence 4445444433333345667999999986 5666665555555554432 233344433 3444444443
No 312
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.51 E-value=0.013 Score=66.68 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHH
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA 112 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~ 112 (697)
.+++++..++...+..+|.|=+|+||||.+..++.... ..++++++.+.|. .|.....
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-~~gkkVLLtsyTh-sAVDNIL 730 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-ALGKKVLLTSYTH-SAVDNIL 730 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-HcCCeEEEEehhh-HHHHHHH
Confidence 45677888888889999999999999988877665432 2455666555554 4444333
No 313
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.51 E-value=0.061 Score=50.73 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.||.||||||++-.+.-..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578899999999999999888776543
No 314
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.50 E-value=0.12 Score=54.05 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred HHHHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+.+++ .++++||+|+|||+++-.+...
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34444454542 4455899999999887766543
No 315
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.50 E-value=0.073 Score=60.10 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+||+||||||++-.++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999988776544
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.45 E-value=0.063 Score=50.25 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.||.||||||++-.+.-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999888766543
No 317
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.065 Score=50.50 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=64.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCC-C
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK-D 140 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 140 (697)
+..++.+.|.||.||||||++-.+.-.... ..+.+. + .-..+.... . ... ..+||.......... .
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~-~-~g~~~~~~~--~----~~~----~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIK-V-LGKDIKKEP--E----EVK----RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEE-E-CCEEcccch--H----hhh----ccEEEEecCCccccCCc
Confidence 357889999999999999888866543322 233322 2 111111000 0 011 123332221111000 0
Q ss_pred -CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCC-CceEEEecccccHHHHHHH
Q 005436 141 -LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAF 214 (697)
Q Consensus 141 -~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~ii~~SAT~~~~~~~~~ 214 (697)
..++. .+.|...+.........+-+++++||-- .+++......+...+..... ...+|+.| -+.+.+..+
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~t--h~~~~~~~~ 161 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSS--HILEEAERL 161 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEC--CCHHHHHHh
Confidence 01111 4444444433333345677999999988 56666655555555544322 23344443 344434434
No 318
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.44 E-value=0.098 Score=57.61 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=92.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCC-cEEEEecCccccccCCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK-RKVVISTNIAETSLTLE 352 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~-~kilvaT~i~e~Gvdip 352 (697)
..+..+|+|..--+.+.-+.++|.-. ++.-..+.|+....+|..++..|.... .-.|++|-..+-|||+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 35678999998888887777777654 888999999999999999999998654 45688999999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
+.+.||. ||..-+ |.--.++.-|+-|-|-++.-.+|+|+++...+.
T Consensus 1113 AADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1113 AADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999997 554433 334456667777777778889999999876655
No 319
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.42 E-value=0.12 Score=63.96 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh---ccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce
Q 005436 50 PVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE---AGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~---~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~ 124 (697)
.+..-|.+.+..+.. ++.++|+|..|+||||++-.++.. .....+..++.++|+-+.+.. + . +.|+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~-L----~-e~Gi~A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGE-M----R-SAGVDA- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHH-H----H-HhCchH-
Confidence 567788888887774 589999999999999886544321 111234557778888665432 2 1 122211
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHH-----hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceE
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM-----MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l-----~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~i 199 (697)
.|-..++... ..+......++|||||+= +++...+..+++.+.. .+.|+
T Consensus 908 ----------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~~--~garv 961 (1623)
T PRK14712 908 ----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRA 961 (1623)
T ss_pred ----------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhh--CCCEE
Confidence 1112222110 011112346899999997 5555555555554432 35678
Q ss_pred EEeccc
Q 005436 200 IISSAT 205 (697)
Q Consensus 200 i~~SAT 205 (697)
|++.=+
T Consensus 962 VLVGD~ 967 (1623)
T PRK14712 962 VASGDT 967 (1623)
T ss_pred EEEcch
Confidence 877654
No 320
>PLN03025 replication factor C subunit; Provisional
Probab=95.39 E-value=0.15 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++++||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999887766554
No 321
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.072 Score=55.36 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHhcC--CEEEEEcCCCChHHHHHHHHHHh
Q 005436 60 YLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 60 ~~l~~~--~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++.++ ...|+.||+|+||||++..+...
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 445544 47999999999999887766543
No 322
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.38 E-value=0.1 Score=53.53 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.8
Q ss_pred CEEEEEcCCCChHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQ 84 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~ 84 (697)
..+++.||+|+|||+++-.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4799999999999976643
No 323
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.11 Score=54.21 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=36.6
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
|.|-....+.+.+...+.....+++||||+| ..+.....+++|.+.+-.++..+|+.|
T Consensus 86 i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred CCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3333333455555566667889999999999 345566777777665544455555444
No 324
>PTZ00293 thymidine kinase; Provisional
Probab=95.33 E-value=0.074 Score=51.19 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.|...++.||.+||||+.+-..+..... .+.+++++.|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEec
Confidence 4667899999999999866666554433 34556666665
No 325
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.32 E-value=0.091 Score=57.31 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=24.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
+.+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-ESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEee
Confidence 4589999999999977765554432 2345566655
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.30 E-value=0.025 Score=54.62 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=26.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
..++|+|||||||||.+..++.......++.++.+-.|.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 458999999999999887665544322344555555553
No 327
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.30 E-value=0.034 Score=58.13 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=31.7
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
+..++..+.+++|+|+|||||||++..++... ....+++.+=-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~~~i--p~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAALREI--PAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC--CCCCeEEEecCCCcc
Confidence 44456788999999999999999987665433 233455554444443
No 328
>CHL00181 cbbX CbbX; Provisional
Probab=95.29 E-value=0.23 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+.++++.||+|+|||+++-.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999977665533
No 329
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.27 E-value=0.21 Score=52.68 Aligned_cols=137 Identities=22% Similarity=0.257 Sum_probs=86.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
.+++++|=-||||||....+.........+..++.+-+.|-++....+.+++..++++-.. + .. ...+-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~----~~Pv~ 169 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TE----KDPVE 169 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CC----CCHHH
Confidence 3577899999999987766554433323344578888999999877787888887765321 1 00 11111
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhhcCc
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARK 219 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~~~ 219 (697)
++..+ +... ....+++||||=|-....+.+++..+...-...+|+--++.+-|+. ++...++-|+...
T Consensus 170 Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 170 IAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred HHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 11111 1111 2356899999999944466655555544444467777788888887 6666777776543
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.25 E-value=0.04 Score=52.36 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988876554
No 331
>PRK06620 hypothetical protein; Validated
Probab=95.22 E-value=0.077 Score=51.85 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.8
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQY 85 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~ 85 (697)
+.+++.||+|+|||+++-.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 55899999999999777653
No 332
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.21 E-value=0.045 Score=52.32 Aligned_cols=32 Identities=38% Similarity=0.458 Sum_probs=25.3
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
-+-..+..+.+++++|||||||||++..++..
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34455677899999999999999988765543
No 333
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.21 E-value=0.11 Score=51.37 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..+++.|++|+|||++..+++.... .++.++++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCC
Confidence 45678999999999999988777776542 244567777643
No 334
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.18 Score=54.06 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
.+.+.+...+...++.++||||+|.. +......+++.+..-.++. ++++.||
T Consensus 104 ~l~~~~~~~p~~~~~kViiIDead~m--~~~aanaLLk~LEep~~~~-~fIL~a~ 155 (394)
T PRK07940 104 ELVTIAARRPSTGRWRIVVIEDADRL--TERAANALLKAVEEPPPRT-VWLLCAP 155 (394)
T ss_pred HHHHHHHhCcccCCcEEEEEechhhc--CHHHHHHHHHHhhcCCCCC-eEEEEEC
Confidence 34444555566678899999999932 3334455566554433343 4444444
No 335
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.06 E-value=0.07 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++++.||+|+||||++-.+..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 579999999999998877665554
No 336
>PHA02533 17 large terminase protein; Provisional
Probab=95.06 E-value=0.66 Score=51.81 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=83.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH-hccccCCCeEEEEECccHHHHHHHHHHHHHHhC-C---
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-EAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-V--- 121 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~-~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~-~--- 121 (697)
..+++..+|..++..+..++..++..+=..|||+++..+++ ......+..++++++.+..+...+ +++..... .
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF-~~ik~~ie~~P~l 134 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVL-DRTKQAIELLPDF 134 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHHHHhCHHH
Confidence 35779999999999987777788889999999988775443 333344557777888877766533 33332111 0
Q ss_pred -cceeEEe--eEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 122 -KVGEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 122 -~~~~~~g--~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
..+.... ..+.+ .. +..|.+.|.+. +.. .=.+.+++|+||+|......+++..+. -.+......+
T Consensus 135 ~~~~i~~~~~~~I~l----~N-GS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai~-p~lasg~~~r 202 (534)
T PHA02533 135 LQPGIVEWNKGSIEL----EN-GSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAIQ-PVISSGRSSK 202 (534)
T ss_pred hhcceeecCccEEEe----CC-CCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHHH-HHHHcCCCce
Confidence 1110000 01111 12 45565555431 101 112457899999994322223333332 2233333445
Q ss_pred EEEecccccHHHHHHHh
Q 005436 199 LIISSATIEAKSMSAFF 215 (697)
Q Consensus 199 ii~~SAT~~~~~~~~~~ 215 (697)
+++.|..-....+.+.+
T Consensus 203 ~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 203 IIITSTPNGLNHFYDIW 219 (534)
T ss_pred EEEEECCCchhhHHHHH
Confidence 66666554222254444
No 337
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.05 E-value=0.029 Score=42.37 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
+++++|.|++||||||++-.+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999998876543
No 338
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.15 Score=57.78 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+...+..++||||+|.. .......+++.+..-.+...+|+++
T Consensus 115 l~e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 115 LRENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344445577888999999999943 3333444555544433445555544
No 339
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.04 E-value=0.069 Score=60.24 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=40.4
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEE
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~ 404 (697)
.++.|++-.++-+|.|-|+|=.+.- . ....|..+=.|.+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck--------L----------~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK--------L----------RSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE--------e----------cCCCcchHHHHHhccceeeeeccccceec
Confidence 5899999999999999999877663 1 1244566777999999998 6676554
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.97 E-value=0.039 Score=58.28 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=29.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
.+..++|+|||||||||.+..++.......+++++.+-.|.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh
Confidence 4678999999999999988766654322234556666666444
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.95 E-value=0.16 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
+..++.+.|.||.||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999987654
No 342
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.94 E-value=0.18 Score=63.26 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhc---cccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc
Q 005436 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~---~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~ 123 (697)
..+...|.+.+..+.. ++.++|+|..|+||||++-.++... ....+..++.++|+-+.+.. +. +.|+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~-----L~-e~Gi~- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE-----MR-SAGVD- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH-----HH-hcCcc-
Confidence 3577888888888776 4799999999999998876554321 11124457788888766542 22 12221
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHHHHHHh----c-CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCce
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM----D-DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~----~-~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (697)
-.|...++.... . .......++|||||+= +++...+..+++.+.. .+.+
T Consensus 1039 ----------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~gar 1092 (1747)
T PRK13709 1039 ----------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGR 1092 (1747)
T ss_pred ----------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCE
Confidence 112223322110 0 1112345899999997 5666666666655432 3567
Q ss_pred EEEeccc
Q 005436 199 LIISSAT 205 (697)
Q Consensus 199 ii~~SAT 205 (697)
+|++.=+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 7777644
No 343
>PRK09087 hypothetical protein; Validated
Probab=94.94 E-value=0.22 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
++.++++||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5569999999999998877554
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.94 E-value=0.076 Score=60.28 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred HHHHHHHHh---cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc-cHHHHHHHHHHHHHHhCCcceeEEeeE
Q 005436 55 RTAILYLVE---THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP-RRLAVQAVASRVAEEMGVKVGEEVGYT 130 (697)
Q Consensus 55 q~~i~~~l~---~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~-r~l~~~~~~~~~~~~~~~~~~~~~g~~ 130 (697)
+..++..+. ..+.++|++|.|+||||++.++.... .++..+..++-- ..---..+.+++....+.-+....+..
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 444555554 45789999999999999999997522 233334443311 111111333333333321111111100
Q ss_pred eecCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
... . ..+. +..-..+++.+..+- ...+.=++|+|+.| +..+..+-.++-..+....+++.+|+.|=+-
T Consensus 102 ~~l----~--q~~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 102 QTL----L--QKHQ-YVSLESLLSSLLNELASYEGPLYLVLDDYH-LISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHH----H--Hhcc-cccHHHHHHHHHHHHHhhcCceEEEecccc-ccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 000 0 0111 111122333332211 12233589999999 4444434333333344467889999888653
No 345
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.90 E-value=0.14 Score=52.50 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=29.8
Q ss_pred cCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHH
Q 005436 47 QRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIP 83 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp 83 (697)
.--|...+|.-.++++... +.|.+.|+.|||||.++.
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLAL 263 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLAL 263 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHH
Confidence 3458889999999999876 467889999999994433
No 346
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.90 E-value=0.38 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++++||+|+|||+.+-.+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999877766544
No 347
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.11 Score=49.29 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHH-HHHHHHHHhCCcceeEEeeEeecCCcC---
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA-VASRVAEEMGVKVGEEVGYTIRFEDFT--- 137 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 137 (697)
+..++.+.|.||.|+||||++-.+.-.... ..+.+ .+- -..+.... ...... ..++|........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i-~~~-g~~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSI-LID-GEDLTDLEDELPPLR--------RRIGMVFQDFALFPHL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEE-EEC-CEEccccchhHHHHh--------hcEEEEecCCccCCCC
Confidence 457889999999999999988876544322 23332 221 11111000 000001 1123222111110
Q ss_pred CCCCceEEE-echHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 005436 138 NKDLTAIKF-LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (697)
Q Consensus 138 ~~~~~~I~v-~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (697)
+. ...+.+ .+.|...+.........+..++|+||-- .+++.+....+.+.+..
T Consensus 92 t~-~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 92 TV-LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKS 145 (178)
T ss_pred CH-HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHH
Confidence 11 112222 5555554444444446678999999988 56666655555544444
No 348
>PRK04195 replication factor C large subunit; Provisional
Probab=94.84 E-value=0.31 Score=54.16 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+.+++.||+|+|||+++-.+..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999998888776654
No 349
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.12 Score=58.09 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
.+.......|....+.++||||+|. +..+....+++.+..-.....+|+
T Consensus 106 ~i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 106 DIRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred HHHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcCCCCCeEEEE
Confidence 3444444556678899999999994 344455566665443333333333
No 350
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.82 E-value=0.2 Score=53.25 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
.+...+...+......+|||||+|.. ..+....+++.+....++..+|+.
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~l--~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHML--SKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhhc--CHHHHHHHHHHHhCCccceeEEEE
Confidence 35555555666788899999999943 333444555555333334444443
No 351
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.81 E-value=0.26 Score=51.64 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
....+.+-.+...+..++|.|++|+||++++- +++..
T Consensus 9 ~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~ 45 (329)
T TIGR02974 9 LEVLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYL 45 (329)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHh
Confidence 34455666666778889999999999996554 44443
No 352
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.77 E-value=0.054 Score=54.09 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
...-++|+|||||||||.+..++-.........+|-+--|-+..-+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~ 169 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHE 169 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhc
Confidence 3467899999999999777766654433334445555566555443
No 353
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.72 E-value=0.1 Score=53.39 Aligned_cols=47 Identities=30% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
+..++....+++|+|.|||||||++-.+...-.. ..++|.+--+.+|
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eRvItiEDtaEL 212 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DERVITIEDTAEL 212 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEeehhhh
Confidence 3344455569999999999999998877665432 3366766655554
No 354
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.65 E-value=0.17 Score=56.92 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=22.8
Q ss_pred HHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHh
Q 005436 57 AILYLVETH---ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 57 ~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++.++ ...+++||.|+|||+.+-.+...
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455555554 34789999999999877766544
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.63 E-value=0.58 Score=44.17 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++.+.|.||.||||||++-.+.-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4678899999999999999998876543
No 356
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.61 E-value=0.097 Score=63.04 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=87.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC--CcEEEEecCccccccCCCCeE
Q 005436 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIV 355 (697)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~kilvaT~i~e~Gvdip~v~ 355 (697)
++|+|..-.....-+...+... ++....++|+++.++|...++.|.++ ..-.+++|...+.|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999998888888877665 46789999999999999999999875 566778888999999999999
Q ss_pred EEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 356 ~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
.||.+ |+..+ |.-..++..|+-|.|+.++=.+|++.++...+.
T Consensus 784 ~vi~~--------d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVILF--------DPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEEe--------ccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 99974 43222 333445555556666667788999999877554
No 357
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.59 E-value=0.06 Score=56.88 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=30.4
Q ss_pred HHHHHh-cCCEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECccH
Q 005436 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRR 105 (697)
Q Consensus 58 i~~~l~-~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r~ 105 (697)
+.+.+. .+..++|+|||||||||.+..++...... .+.+++.+-.|.+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 344444 67899999999999998887665443211 2234555544443
No 358
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.32 Score=50.56 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=40.5
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
..|.+-....+.+.+...+....+.++||||+|. .+.....++++.+-.- ++..+|++|..
T Consensus 102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEEP-p~~~fILi~~~ 162 (314)
T PRK07399 102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEEP-GNGTLILIAPS 162 (314)
T ss_pred ccCcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhCC-CCCeEEEEECC
Confidence 3455555556777777778888999999999993 3444556666665443 46656665543
No 359
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.49 E-value=0.13 Score=54.58 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=33.7
Q ss_pred chhhHHHHhcCCCcHHHHHHHH-----------------------HHHhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 38 GYASIEKQRQRLPVYKYRTAIL-----------------------YLVETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 38 ~~~~~~~~r~~lPi~~~q~~i~-----------------------~~l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
....+.+.|+.+...++-+-++ ..++++.|++..||+|+|||++...+.
T Consensus 159 Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~ 230 (449)
T TIGR02688 159 DLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLS 230 (449)
T ss_pred CHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHh
Confidence 3456677777766655543333 345788999999999999996655433
No 360
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.18 Score=52.74 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=36.3
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
++-....+.+.....+....+.+||||||+ .++.+...++++.+.....+..+++.+
T Consensus 90 ~~~~vr~~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 90 IVEQVRELAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred hHHHHHHHHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 333334444444444445789999999999 445566666666666666666666655
No 361
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.25 Score=56.54 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+...+...|....+.++||||||. +.......+++.+-.-.+...+|+++
T Consensus 104 ReLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 104 RELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 34555555667778899999999993 34445556666655444444445443
No 362
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.42 E-value=0.16 Score=65.18 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHH---HHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 48 RLPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQ---YLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~---~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
...+...|.+.+..+.. ++.++|+|+.|+||||++-. .+.+.....+..++.++|+-+.+. .+.+ .|..
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~-~L~~-----~g~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVG-ELKS-----AGVQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-HHHh-----cCCc
Confidence 34678888888888764 47889999999999988832 222222223556788888865543 2211 1221
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHHHHHH---hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceE
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM---MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l---~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~i 199 (697)
. .|...++... ...+.+...++|||||+= ++++..+..+++.+. ..+.|+
T Consensus 1091 a-----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~ 1143 (1960)
T TIGR02760 1091 A-----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRA 1143 (1960)
T ss_pred h-----------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEE
Confidence 0 1222222110 111224567899999997 556655555555443 234677
Q ss_pred EEecc
Q 005436 200 IISSA 204 (697)
Q Consensus 200 i~~SA 204 (697)
|++.=
T Consensus 1144 vlvGD 1148 (1960)
T TIGR02760 1144 VSLGD 1148 (1960)
T ss_pred EEeCC
Confidence 76653
No 363
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.41 E-value=0.075 Score=55.23 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=27.7
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv 100 (697)
.++..+.+++++|||||||||++..++.... ...+++.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~i 177 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITI 177 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEE
Confidence 4556789999999999999999876654432 23344444
No 364
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.40 E-value=0.041 Score=54.68 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005436 68 TIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++|.|+.|||||+.+..++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999888777653
No 365
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.39 E-value=0.089 Score=53.24 Aligned_cols=47 Identities=32% Similarity=0.476 Sum_probs=29.7
Q ss_pred HHHHHh-cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccH
Q 005436 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 58 i~~~l~-~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+.+++. .+..++|+|||||||||.+..++.... ....+++.+-.|.+
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~-~~~~~iitiEdp~E 119 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN-TPEKNIITVEDPVE 119 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEECCCce
Confidence 334444 346899999999999998876654432 12334555545544
No 366
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.18 Score=53.86 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHH
Q 005436 56 TAILYLVETH---ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 56 ~~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+.+...+.++ +.++++||+|+|||+.+..+..
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455555554 3788999999999987776643
No 367
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.16 Score=55.99 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEE
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~ 201 (697)
.+...+...|....+.++||||+|. +..+....+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 4445555566778899999999993 334444555555444333444444
No 368
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.34 E-value=0.12 Score=51.06 Aligned_cols=43 Identities=35% Similarity=0.352 Sum_probs=30.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccC-----CCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~-----~~~~Ivv~p~r 104 (697)
+..++.+.|.||+|+|||+++.+++....... +..++++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44578999999999999988877766543222 15677776543
No 369
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.32 E-value=0.14 Score=52.95 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
-+..+..+.|.||+|||||++.-+++.... ..+++++++.....+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALD 96 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhH
Confidence 455678999999999999988887776653 3466778886665443
No 370
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.31 E-value=0.15 Score=49.15 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.||.||||||++-.+.-..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999888775543
No 371
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.06 Score=60.11 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.1
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
--.+..++++-++||.|+||||++..+..-.
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3346789999999999999999988766543
No 372
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.16 E-value=0.15 Score=58.12 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=24.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~ 90 (697)
+..++.+-++|||||||||++-.+.....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 67889999999999999998887765443
No 373
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.15 E-value=0.097 Score=61.20 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+|++||||||++-.+....
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999888776443
No 374
>PHA00729 NTP-binding motif containing protein
Probab=94.12 E-value=0.15 Score=49.64 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=21.6
Q ss_pred HHHHHhcC--CEEEEEcCCCChHHHHHHHHHH
Q 005436 58 ILYLVETH--ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 58 i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+++.+.++ .+++|.|++|+|||+++..+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 44444333 4799999999999987776554
No 375
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.057 Score=59.07 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.+.......|.-.++.+.||||+| ++......+++|.+-+-.+.+.+|+.+
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred HHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEec
Confidence 455555667778999999999999 566667788888776655566665543
No 376
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.05 E-value=0.31 Score=45.56 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=31.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
++|.|++|||||+...+++.. .+.+++|+.-.+.. ...+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~-d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAF-DDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcC-CHHHHHHHHH
Confidence 689999999999888888765 23466777655544 3356666555
No 377
>PRK05973 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.06 Score=53.13 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
+.--+..+..++|.|++|+|||++..+++.+... .+.+++|++-
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSl 100 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTL 100 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEE
Confidence 3334567889999999999999888888876643 4556777753
No 378
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.27 Score=55.96 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+....+.++||||+|.. ..+....+++.+..-.....+|+.+
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~L--s~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHML--SQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECcccC--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3444455677889999999999943 3344555555544433344444433
No 379
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.02 E-value=0.65 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+++++.|||||||||++..+....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 689999999999999988776544
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.01 E-value=0.25 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.||+|+|||+++-.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999887766543
No 381
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.00 E-value=0.64 Score=49.57 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=60.3
Q ss_pred EEEcCCCChHHHHHHHHHHhccccCCC-eEEEEECccHHHHHHHHHHHH---HHhCCcceeEEeeEeecCCc-CCCCCce
Q 005436 69 IIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASRVA---EEMGVKVGEEVGYTIRFEDF-TNKDLTA 143 (697)
Q Consensus 69 ii~apTGsGKT~~lp~~l~~~~~~~~~-~~Ivv~p~r~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 143 (697)
++.++.|+|||+++..++......... ..++++++...+...+..... ..... ... ..+....+.. .......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~nG~~ 78 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFE-IKFNEWNDRKIILPNGSR 78 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETTS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcC-cccccCCCCcEEecCceE
Confidence 578999999998877665554444443 556666888777775433211 11111 111 1111111111 1122455
Q ss_pred EEEechHH--HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc-cHHHHHHHhh
Q 005436 144 IKFLTDGV--LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFH 216 (697)
Q Consensus 144 I~v~T~~~--Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~ 216 (697)
|.+.+.+. -...+.. ..++++++||+-. ...+.....+............+..|-|. ....+..++.
T Consensus 79 i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 79 IQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp EEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHH
T ss_pred EEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCCCCCCceeeeee
Confidence 66666432 1122222 4688999999762 22234444455544444433333455544 3333444443
No 382
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.99 E-value=0.11 Score=50.62 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999988876544
No 383
>PRK09354 recA recombinase A; Provisional
Probab=93.98 E-value=0.18 Score=52.66 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=39.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~ 123 (697)
+..+..+.|.||+|||||++..+++.+.. ..++.++++.....+-. ..++.+|..+
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~-----~~a~~lGvdl 112 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDP-----VYAKKLGVDI 112 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHH-----HHHHHcCCCH
Confidence 45578999999999999988888877653 34667888887765543 2344555543
No 384
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.96 E-value=0.85 Score=51.08 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred cCCEEEEEcCCCChHHHHHH-HHHHhccccCCCeEEEEECccHHHHHHH---HHHHHHHhCCccee-EEeeEe--ecCCc
Q 005436 64 THATTIIVGETGSGKTTQIP-QYLKEAGWADGGRVIACTQPRRLAVQAV---ASRVAEEMGVKVGE-EVGYTI--RFEDF 136 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp-~~l~~~~~~~~~~~Ivv~p~r~l~~~~~---~~~~~~~~~~~~~~-~~g~~~--~~~~~ 136 (697)
+.+-.++..|==.|||+.+. .+......-.+.++++++|.+..+.... ..++...+...... .-|-.+ .+.+
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n- 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD- 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC-
Confidence 45668888899999996443 3332332224667788887777765522 22222222211111 112111 2211
Q ss_pred CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHh
Q 005436 137 TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 215 (697)
.....|.+.+.. ..+.. =.+++++|||||++ +..+.+..++-.+.. .+.++|.+|.|-..+....|+
T Consensus 332 --G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~--~n~k~I~ISS~Ns~~~sTSFL 399 (738)
T PHA03368 332 --GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQ--TNCKIIFVSSTNTGKASTSFL 399 (738)
T ss_pred --CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhc--cCccEEEEecCCCCccchHHH
Confidence 112366665331 01111 34799999999995 344566666633332 388999999998776666776
Q ss_pred hcC
Q 005436 216 HAR 218 (697)
Q Consensus 216 ~~~ 218 (697)
.+.
T Consensus 400 ~nL 402 (738)
T PHA03368 400 YNL 402 (738)
T ss_pred Hhh
Confidence 543
No 385
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.37 Score=50.01 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=40.3
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
|.|-..-.+.+.+...+....+.++||||||. ++.....+++|.+-+-.++..+|+.|..
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 44444444555566667777899999999993 4556677777766655556667766643
No 386
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.92 E-value=0.12 Score=56.47 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=31.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.|++|+|||+++.+++.... ..+.+++|++-.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~E 117 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGE 117 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcc
Confidence 45578999999999999999888877654 235677888754
No 387
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.91 E-value=0.24 Score=47.04 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.||.|+||||++-.+.-..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999888766543
No 388
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.91 E-value=0.39 Score=56.92 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.6
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQY 85 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~ 85 (697)
++++.||||+|||.++-.+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALAL 616 (852)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999666544
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.88 E-value=0.12 Score=54.81 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=28.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEECccHH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRL 106 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~p~r~l 106 (697)
..+..++|+|||||||||.+..++...... ...+++.+-.|.++
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEY 191 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchh
Confidence 456789999999999998887665433211 23445555555443
No 390
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.19 Score=54.23 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~ 90 (697)
++.++.+-|.|+|||||||++..+.....
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 57889999999999999999887765443
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.78 E-value=0.4 Score=45.36 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCC-CceEEEecc
Q 005436 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSA 204 (697)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~ii~~SA 204 (697)
.+.+++++||.. ..++......+.+.+..... +..+|+.|-
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567999999998 56666555555555444322 355666553
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.77 E-value=0.14 Score=54.36 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.|++|+|||+++.+++..... .+.+++|++-.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E 119 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE 119 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 455789999999999999998888765532 34567887654
No 393
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.72 E-value=0.34 Score=52.39 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=70.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECccHHHHHHHHHHHHHH---hCCcceeEEeeEeecC--CcCC
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFE--DFTN 138 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~--~~~~ 138 (697)
+..++.|+.|||||+.+...+...... .+.+++++-++..-..+.+...+... +|... -+..... ....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~----~~~~~~~~~~i~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY----EFKKSKSSMEIKI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh----heeecCCccEEEe
Confidence 457899999999996665544433333 45677888888887777666655533 23211 1111100 0001
Q ss_pred CC-CceEEEech-HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 139 KD-LTAIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 139 ~~-~~~I~v~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
.. ...|++..- +.-.+ +. ....++.+.+|||.+.. .+.+..++.+++.... ...+++|.|++
T Consensus 78 ~~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~~~~-~~~i~~t~NP~ 141 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQLT--FEDIKELIPRLRETGG-KKFIIFSSNPE 141 (396)
T ss_pred cCCCeEEEeecccCChhH-hh---CcceeeeehhhhhhhcC--HHHHHHHHHHhhccCC-ccEEEEEcCcC
Confidence 11 344555433 21111 11 12346899999999653 3455555555432122 12478888883
No 394
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.70 E-value=0.14 Score=56.75 Aligned_cols=94 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 141 (697)
+..+..++|.||+|+|||++..+++.+. ..++.+++|++---.. +...+-++.+|.......- .
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~-~~~ge~~~y~s~eEs~---~~i~~~~~~lg~~~~~~~~------------~ 323 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENA-CANKERAILFAYEESR---AQLLRNAYSWGIDFEEMEQ------------Q 323 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEeeCCH---HHHHHHHHHcCCChHHHhh------------C
Q ss_pred ceEEEec-------hHHHHHHHhcCCCCCCCcEEEEe
Q 005436 142 TAIKFLT-------DGVLLREMMDDPLLTKYSVIMVD 171 (697)
Q Consensus 142 ~~I~v~T-------~~~Ll~~l~~~~~l~~~~~iIiD 171 (697)
..+.+.. ++.++..+.....-.+.+.||||
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEc
No 395
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.68 E-value=0.19 Score=52.07 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
-+..+..+.|.||+|||||++.-+++.+.. ..++.++++.....+-
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~ 96 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALD 96 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECccccHH
Confidence 345678999999999999988888776653 2456788887765554
No 396
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=0.53 Score=48.72 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=80.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
.++.++|=-|+||||....+.+..........++|.-|-+..+-...+..+..-+++... .|+. .-.+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syte---------~dpv~ 170 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYTE---------ADPVK 170 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--cccc---------cchHH
Confidence 567889999999998887776654333334568898887776654333344444444321 1210 11122
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhhc
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHA 217 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~~ 217 (697)
|+..+ .....-.++++||+|-.-....+..++..+........|+.-+..|-|++ ..+..+.-|..
T Consensus 171 ia~eg------v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 171 IASEG------VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred HHHHH------HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 22222 11111367999999999833345555555555555577888888999998 55555666654
No 397
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.64 E-value=0.33 Score=55.99 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=56.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHH---HHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcc
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQY---LKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~---l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~ 123 (697)
.+-|+...|.+++.. ..+.++|.|..|||||+.+..- +.......+.++++++-+++.+ +.+.+|+....|
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA-~em~eRL~~~lg--- 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAA-EEMDERIRERLG--- 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHH-HHHHHHHHHhcC---
Confidence 346899999887753 3456799999999999555432 3333223445678888887765 467777766553
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHHHHHH
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM 156 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l 156 (697)
...|.+.|-..+-..+
T Consensus 267 -----------------~~~v~v~TFHSlal~I 282 (684)
T PRK11054 267 -----------------TEDITARTFHALALHI 282 (684)
T ss_pred -----------------CCCcEEEeHHHHHHHH
Confidence 1346778877665443
No 398
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=93.62 E-value=0.49 Score=49.02 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred cCCCcHHHHHHHHHHHhcCC------EEEEEcCCCChHHHHHHHHHHhc
Q 005436 47 QRLPVYKYRTAILYLVETHA------TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~------~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...|..+.|-..+..+..++ ++++.|.+|||||+++-+++...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 45677888888888776654 34899999999999999888765
No 399
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.51 Score=44.44 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCC-cceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV-KVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+...+++||-.||||+-+-+.+..... .+.++++..|--.- ..+. .+....| ....-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~-----------R~~~~~V~Sr~G----------~~~~A 61 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAIDT-----------RYGVGKVSSRIG----------LSSEA 61 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEeccccc-----------ccccceeeeccC----------Ccccc
Confidence 456789999999999877666655433 34456666654111 0111 0111111 11234
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHE 175 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~He 175 (697)
+.|-.+..+...+........+++|.||||+-
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF 93 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF 93 (201)
T ss_pred eecCChHHHHHHHHhcccCCCcCEEEEehhHh
Confidence 55666777777776554444489999999993
No 400
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.59 E-value=0.064 Score=53.62 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
++.-+..++.++|.|+||+|||+++.+++.......+.++++++-
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 334566788999999999999988888877665443566777763
No 401
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.58 E-value=0.32 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....+.++|+||.|.||||++.+|+..
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998853
No 402
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.55 E-value=0.2 Score=51.49 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHHHHHhc----CCEEEEEcCCCChHHHHHHHHHHhccccC-CCeEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 55 RTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 55 q~~i~~~l~~----~~~~ii~apTGsGKT~~lp~~l~~~~~~~-~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
-+++.+.+.. .+.+.|+|+.|+|||+++-.+........ -..++++.-.+......+.+.+...++..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 3456666655 57899999999999988887775522111 22344443333322244455566666543
No 403
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.55 E-value=0.082 Score=52.70 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=32.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.||+|+|||++..+++.+.. ..+.++++++--
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~e 58 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALE 58 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEee
Confidence 34678999999999999999988887754 346677888743
No 404
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.53 E-value=0.074 Score=51.73 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+..+.|.||+||||||++-.+-...
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999999988765433
No 405
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.48 Score=54.34 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=48.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
.+.+..||||.|||.++-++.... +... ..++-.-..+- .-...+++..|.+.| +|||...
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~L-fg~e-~aliR~DMSEy---~EkHsVSrLIGaPPG-YVGyeeG------------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEAL-FGDE-QALIRIDMSEY---MEKHSVSRLIGAPPG-YVGYEEG------------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHh-cCCC-ccceeechHHH---HHHHHHHHHhCCCCC-Cceeccc-------------
Confidence 468889999999995544433322 2222 23333333222 333446667777664 6777431
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCc
Q 005436 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHE 175 (697)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDE~He 175 (697)
|.|.....++| |++|.+||+..
T Consensus 583 ----G~LTEaVRr~P----ySViLlDEIEK 604 (786)
T COG0542 583 ----GQLTEAVRRKP----YSVILLDEIEK 604 (786)
T ss_pred ----cchhHhhhcCC----CeEEEechhhh
Confidence 34444555544 89999999763
No 406
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=93.50 E-value=0.32 Score=47.38 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=25.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGW 91 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~ 91 (697)
++.+++..|.||.||||||++..+..+...
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 568899999999999999999888776643
No 407
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.47 E-value=0.33 Score=55.61 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+||+||||||++-.++...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999988776654
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.45 E-value=0.082 Score=50.38 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=23.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..+.+++|+||.||||||++--+-...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 35689999999999999999987654433
No 409
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.43 E-value=0.43 Score=52.31 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHh
Q 005436 57 AILYLVETH---ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 57 ~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+...+..+ +..++.||.|+|||+.+-.+...
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444555554 34789999999999877766543
No 410
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.38 E-value=0.29 Score=53.50 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc-----ccCCCeEEEEECccHHHHHHHHHHHHHHhCC
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-----WADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~-----~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~ 121 (697)
|.+.|++|+.. ..+..+||+|..||||||++.+-+.... .-.++.++++.|.+-.+ .+..++.-++|.
T Consensus 213 IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl--eYis~VLPeLGe 285 (747)
T COG3973 213 IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL--EYISRVLPELGE 285 (747)
T ss_pred hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH--HHHHHhchhhcc
Confidence 44455555543 3567899999999999977654333221 11334567777776553 345555556653
No 411
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.38 E-value=0.15 Score=44.71 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
-+.+.+.+..++++++.|+-|+||||++-.++....... -+.+||-.+
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~----~V~SPTF~l 52 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGIDE----EVTSPTFSL 52 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--S--------TTTTS
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCCC----CcCCCCeEE
Confidence 456777788899999999999999998887776553221 456677544
No 412
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.35 E-value=0.1 Score=50.98 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=30.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
+.+..-+|++|+|||||||.+..++-.......+.+|-+--|.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPI 166 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPI 166 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChH
Confidence 3566789999999999998877776655444445556555553
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.32 E-value=0.089 Score=50.15 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
++|.||+|+|||++..+++.... ..+.++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECC
Confidence 68999999999988888877654 345667777643
No 414
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.73 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=17.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.-+-+++.||+|+||| ++...+.
T Consensus 184 PPKGVLLYGPPGTGKT-LLAkAVA 206 (406)
T COG1222 184 PPKGVLLYGPPGTGKT-LLAKAVA 206 (406)
T ss_pred CCCceEeeCCCCCcHH-HHHHHHH
Confidence 4467999999999999 4444443
No 415
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.27 E-value=0.24 Score=49.36 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 457899999999999999998877654
No 416
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.26 E-value=0.52 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+.+++.||+|+|||.++-.+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~ 136 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNE 136 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999766655443
No 417
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.26 E-value=0.062 Score=53.15 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=30.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
..+..++|.|++|+|||++..+++.+.....+.++++++-.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 45789999999999999998888877644315567888743
No 418
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.24 E-value=0.28 Score=50.03 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.|++|+||||++-.+....
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 5688999999999999999888765543
No 419
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.20 E-value=0.13 Score=50.96 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=40.4
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhc
Q 005436 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 148 T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
+=|..-|.+....+.++-+++++||-= -+++......+...+...+.+-+.|+| -|-|...+.+|++.
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~-vtHDL~~v~~~~D~ 208 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLM-VTHDLGLVMAYFDR 208 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEE-EeCCcHHhHhhCCE
Confidence 345555555555567788999999965 355554444444444443333334444 35677778888764
No 420
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.42 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+++++.||+|-||||++-.+..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 689999999999998776554443
No 421
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.44 Score=46.11 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 467889999999999999988876544
No 422
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.07 E-value=0.31 Score=48.08 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 468899999999999999988876544
No 423
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.06 E-value=0.78 Score=51.75 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv 100 (697)
...+.+-.+...+..++|.|++|+||++++-. ++......++..+.+
T Consensus 207 ~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~-ih~~s~r~~~pfv~i 253 (534)
T TIGR01817 207 QVVDQARVVARSNSTVLLRGESGTGKELIAKA-IHYLSPRAKRPFVKV 253 (534)
T ss_pred HHHHHHHHHhCcCCCEEEECCCCccHHHHHHH-HHHhCCCCCCCeEEe
Confidence 34445555556677899999999999966554 443333233344433
No 424
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.00 E-value=0.26 Score=57.18 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC-ccccccCCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~-i~e~Gvdip~ 353 (697)
.+.+++|.+||+.-+.+.++.+.+.+.. .++.+..+||+++..+|.++++...+|...|+|+|. .+...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 4668999999999999999988877532 258899999999999999999999999999999996 4566778888
Q ss_pred eEEEE
Q 005436 354 IVYVV 358 (697)
Q Consensus 354 v~~VI 358 (697)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88877
No 425
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.97 E-value=0.27 Score=47.70 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998876543
No 426
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.91 E-value=0.84 Score=47.90 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...+......++||||+|. .+.+....+++.+..-.++..+|+.+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 444445556677889999999993 34445556666665544555555544
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.89 E-value=0.13 Score=51.40 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.++|.||.|+||||++-.+....
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4688999999999999998887655443
No 428
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.89 E-value=0.27 Score=48.62 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988877544
No 429
>PHA00149 DNA encapsidation protein
Probab=92.88 E-value=1.3 Score=44.04 Aligned_cols=144 Identities=18% Similarity=0.211 Sum_probs=82.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEe
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFL 147 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~ 147 (697)
-.+.|.-|-|||+.+-..+.......+.+.|++--...-... ..+.++.+.-.-+. ..+.+........ ...|-+.
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kgeqfiYLRr~k~El~~-k~~Ff~d~~~~~~~--~~F~Vkg~ki~~~-~k~igy~ 95 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKGEQFIYLRRYKSELKK-KSKFFADIAQEFPN--TEFEVKGRKIYIK-GKLIGYA 95 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcCcEEEEEEecchhhhh-hhhhhHHHHHhCCC--CceEEEccEEEEc-CeEEEEE
Confidence 355699999999998888777767677788886443322221 23334433321111 1111221111112 3445555
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEeCCCc-CC------cChhHHHHHHHHHHHhCCCceEEEecccc-cHHHHHHHhh
Q 005436 148 TDGVLLREMMDDPLLTKYSVIMVDEAHE-RS------ISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFH 216 (697)
Q Consensus 148 T~~~Ll~~l~~~~~l~~~~~iIiDE~He-r~------~~~d~l~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~ 216 (697)
.|=.-...+. .....++.+|++||+-- ++ -+.+.++.++..+.+.+.+++++++|-.. ..+.+-.||+
T Consensus 96 i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 96 IPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred EehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 5533333332 33478999999999872 21 23356778888888888899999999654 2233344444
No 430
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.82 E-value=0.71 Score=45.67 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhh
Q 005436 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFH 216 (697)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 216 (697)
-+-.++|+||.= -+++......+++.+.....+-..-++.+|-+.+.+..|.+
T Consensus 155 ~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 155 MGPEILLLDEPT-AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCC
Confidence 356899999987 45666555555655555444432333445667776666654
No 431
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.70 E-value=0.16 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998776644
No 432
>PF12846 AAA_10: AAA-like domain
Probab=92.70 E-value=0.11 Score=53.69 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv 100 (697)
|.+++|.|+||||||+.+-.++... ...+..++++
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~g~~~~i~ 35 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRRGPRVVIF 35 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHcCCCEEEE
Confidence 5689999999999998877665443 3344444444
No 433
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.69 E-value=0.18 Score=58.28 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=61.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeE
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~ 355 (697)
++++||.+|+++-+.++.+.+.+.+ +..+..+||+++..+|.+.......|..+|+|+|..+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5689999999999999999998764 56799999999999999888888889999999997433 25567777
Q ss_pred EEE
Q 005436 356 YVV 358 (697)
Q Consensus 356 ~VI 358 (697)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 766
No 434
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.69 E-value=0.13 Score=58.10 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+||+||||||++-.+....
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999988776544
No 435
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.69 E-value=1 Score=49.23 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHHHHhc----------CCEEEEEcCCCChHHHHHHHHHHh---ccccCCCeEEEEECccHHHHHHH--H
Q 005436 48 RLPVYKYRTAILYLVET----------HATTIIVGETGSGKTTQIPQYLKE---AGWADGGRVIACTQPRRLAVQAV--A 112 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~----------~~~~ii~apTGsGKT~~lp~~l~~---~~~~~~~~~Ivv~p~r~l~~~~~--~ 112 (697)
.+++.++|.-|+.+|.. -+..+|.-|-+-|||+++..++.. ..+..+....+++++...+.+.. +
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHH
Confidence 56788999999999962 245788899999999887744321 12234555677777777666532 2
Q ss_pred HHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC---CCCCcEEEEeCCCcCCcChhHHHHHHHH
Q 005436 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL---LTKYSVIMVDEAHERSISTDILLGLLKK 189 (697)
Q Consensus 113 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~---l~~~~~iIiDE~Her~~~~d~l~~~l~~ 189 (697)
+.+..... ......+++.. ...|.+.-....++.+..++. -.+..+.|+||.|+..-..+. ...++.
T Consensus 139 r~mv~~~~-~l~~~~~~q~~--------s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~-~~~~~~ 208 (546)
T COG4626 139 RDMVKRDD-DLRDLCNVQTH--------SRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDM-YSEAKG 208 (546)
T ss_pred HHHHHhCc-chhhhhccccc--------eeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHH-HHHHHh
Confidence 22222111 11111111110 111222222222222322222 456789999999965433222 222232
Q ss_pred HHHhCCCceEEEeccc
Q 005436 190 IQRCRSDLRLIISSAT 205 (697)
Q Consensus 190 ~~~~~~~~~ii~~SAT 205 (697)
-...+++..++..|-.
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 2335667777776653
No 436
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.29 Score=56.69 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=59.6
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcc
Q 005436 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (697)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~ 345 (697)
.+.....++++++.+||..-+.++++.|........ .....+. +||.|+..+++.+++.+.+|..+|+|+|+.+
T Consensus 118 sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 118 SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 333334567899999999999999999988765433 3345555 9999999999999999999999999999753
No 437
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.67 E-value=0.25 Score=56.16 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHH-HHHHHHHHhccccC-------------------------------------
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWAD------------------------------------- 93 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT-~~lp~~l~~~~~~~------------------------------------- 93 (697)
..+-..++..+...++.++..|||+||| .++...+.......
T Consensus 27 ~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~ 106 (945)
T KOG1132|consen 27 LAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIAC 106 (945)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCcccc
Q ss_pred ---CCeEEEEECccHHHHHHHHHHHH------------------------------------------------------
Q 005436 94 ---GGRVIACTQPRRLAVQAVASRVA------------------------------------------------------ 116 (697)
Q Consensus 94 ---~~~~Ivv~p~r~l~~~~~~~~~~------------------------------------------------------ 116 (697)
..+++|.+-|....+|-+.+.-.
T Consensus 107 ~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~~s 186 (945)
T KOG1132|consen 107 YTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEEKS 186 (945)
T ss_pred ccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccccccccc
Q ss_pred -----------HHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCC
Q 005436 117 -----------EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (697)
Q Consensus 117 -----------~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~H 174 (697)
-|-=+++|..++...-|.........+|+||-+..|++-..+... --+-++||+||||
T Consensus 187 l~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAH 257 (945)
T KOG1132|consen 187 LQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAH 257 (945)
T ss_pred cccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEeccc
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.66 E-value=0.13 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=30.2
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
..+..++|.|++|+|||++..+++..... .+.++++++-
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEe
Confidence 46788999999999999888888776533 3556777763
No 439
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.66 E-value=0.17 Score=51.24 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+....+.++..+..+..+++.||+|+|||+++..+..
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4455677888889999999999999999977766553
No 440
>PRK06904 replicative DNA helicase; Validated
Probab=92.65 E-value=0.35 Score=53.27 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH-HHHHhCC
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR-VAEEMGV 121 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~-~~~~~~~ 121 (697)
+..-++++.-+..++.+||.|.||.|||+++..++.......+.++++++ -+....++..| ++...++
T Consensus 208 ~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS--lEMs~~ql~~Rlla~~s~v 276 (472)
T PRK06904 208 FTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS--LEMPAEQIMMRMLASLSRV 276 (472)
T ss_pred hHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe--ccCCHHHHHHHHHHhhCCC
Confidence 55556677778889999999999999997776666554433455565554 33555666655 4444443
No 441
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.63 E-value=1 Score=44.39 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988876643
No 442
>PLN03232 ABC transporter C family member; Provisional
Probab=92.63 E-value=0.29 Score=61.99 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+-|+|+|||||||++-.++...
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999888776543
No 443
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.62 E-value=0.63 Score=48.52 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
+...+...|......++||||+|.. +.....++++.+..-.++..+|+.+
T Consensus 81 ~~~~~~~~p~~~~~kv~iI~~ad~m--~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 81 IIEEVNKKPYEGDKKVIIIYNSEKM--TEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHHHhcCcccCCceEEEEechhhc--CHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 3334445677788999999999943 3444555666555444445455443
No 444
>PRK10436 hypothetical protein; Provisional
Probab=92.59 E-value=0.25 Score=53.98 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHHHHHHH-HH-hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 53 KYRTAILY-LV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 53 ~~q~~i~~-~l-~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
+.+.+.+. .+ ..+..++++|||||||||.+..++.... ....+++-+--|-
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~-~~~~~i~TiEDPv 256 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLN-TAQINICSVEDPV 256 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhC-CCCCEEEEecCCc
Confidence 33433343 33 3567899999999999988866555432 2334444444443
No 445
>PRK13695 putative NTPase; Provisional
Probab=92.58 E-value=1.7 Score=40.78 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++++|+.|+||||++..+...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988866543
No 446
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.57 E-value=1 Score=47.20 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
+....+.+-.+...+..++|+|++|+||++++-.+-
T Consensus 15 ~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH 50 (326)
T PRK11608 15 FLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLH 50 (326)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 444556666677778889999999999996665443
No 447
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.56 E-value=0.14 Score=52.15 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
--+..+..++|.|+||+|||+++-+++.......+.++++++-
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4456788999999999999988888877654333556777764
No 448
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.15 Score=49.02 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEecccccHHHHHHHhh
Q 005436 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFH 216 (697)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~~~~~~~~~~ 216 (697)
+-+.++.|+||-+ -+++.|.+..+.+-+...+ ++.-+++.| ....+.+|..
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT---Hy~rll~~i~ 211 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT---HYQRLLDYIK 211 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe---cHHHHHhhcC
Confidence 4456899999999 6899998887777776644 333344443 3444555553
No 449
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.55 E-value=0.11 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+++|.|++||||||++-.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999888766554
No 450
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.53 E-value=0.13 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988876543
No 451
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.50 E-value=0.54 Score=54.80 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=26.8
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.+-.+...+..++|.|+||+|||+++-. +.......++..+.+-
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~-ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIARA-IHNLSGRNNRRMVKMN 434 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHHH-HHHhcCCCCCCeEEEe
Confidence 3344445666899999999999965554 4433332344444443
No 452
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.49 E-value=0.18 Score=57.64 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|+|++||||||++-.+....
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678999999999999999988776544
No 453
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.49 E-value=0.15 Score=51.71 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=32.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
+..+.+++|.|++|||||+...+++...... +.++++++-
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~ 59 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVST 59 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 4578999999999999999999998876543 566777763
No 454
>PRK13764 ATPase; Provisional
Probab=92.49 E-value=0.18 Score=56.50 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=30.4
Q ss_pred HHHHH-hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEE-EEECccHH
Q 005436 58 ILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRL 106 (697)
Q Consensus 58 i~~~l-~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~I-vv~p~r~l 106 (697)
+++.+ ..+.+++|+|||||||||.+..++.... ..++.| .+--|+++
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~--~~~riV~TiEDp~El 297 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYA--DMGKIVKTMESPRDL 297 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh--hCCCEEEEECCCccc
Confidence 34444 4468899999999999988876554432 233333 55556555
No 455
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.45 E-value=0.21 Score=48.21 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999888866543
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.43 E-value=0.23 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 467899999999999999988877643
No 457
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.42 E-value=0.17 Score=57.84 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
++++-+++|+||.= .+++.+....+.+.+....++.-+|+.|
T Consensus 486 ll~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiit 527 (588)
T PRK13657 486 LLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIA 527 (588)
T ss_pred HhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46778999999997 5677777777766666654454455544
No 458
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.40 E-value=0.62 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+..+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 356999999999999776665544
No 459
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=92.38 E-value=0.88 Score=49.24 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeec
Q 005436 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF 133 (697)
Q Consensus 54 ~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 133 (697)
..+.+-+....+-.|+|.|+|||||- ++..+++......+++.|.+-.. ++.. ++.+ ++.+|-.-|..+|-..+.
T Consensus 153 l~~~i~kvA~s~a~VLI~GESGtGKE-lvAr~IH~~S~R~~~PFVavNca-Aip~-~l~E--SELFGhekGAFTGA~~~r 227 (464)
T COG2204 153 LRRLIAKVAPSDASVLITGESGTGKE-LVARAIHQASPRAKGPFIAVNCA-AIPE-NLLE--SELFGHEKGAFTGAITRR 227 (464)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHH-HHHHHHHhhCcccCCCceeeecc-cCCH-HHHH--HHhhcccccCcCCccccc
Confidence 34455555566778999999999999 56666766654444444433211 1111 1122 344565555555532221
Q ss_pred CCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH
Q 005436 134 EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (697)
Q Consensus 134 ~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~ 191 (697)
.. .+- ..+=+.+++||+.+. ..+....+++-+.
T Consensus 228 ~G-------~fE----------------~A~GGTLfLDEI~~m--pl~~Q~kLLRvLq 260 (464)
T COG2204 228 IG-------RFE----------------QANGGTLFLDEIGEM--PLELQVKLLRVLQ 260 (464)
T ss_pred Cc-------cee----------------EcCCceEEeeccccC--CHHHHHHHHHHHH
Confidence 11 111 234578999999954 3445555555554
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.36 E-value=0.41 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+.++.||+|+|||+++-.+...
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999887765543
No 461
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.35 E-value=0.14 Score=50.90 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|.|+.|+||||++-.+....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988776543
No 462
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.32 E-value=0.19 Score=55.91 Aligned_cols=75 Identities=25% Similarity=0.252 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.++++||.+|++.-+.++++.|++.+ +..+..+||+++..+|.++.....+|+.+|+|+|..+- -..++++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l 94 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNL 94 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCC
Confidence 46689999999999999999998765 45688899999999999988888889999999996533 2456777
Q ss_pred EEEE
Q 005436 355 VYVV 358 (697)
Q Consensus 355 ~~VI 358 (697)
.+||
T Consensus 95 ~lII 98 (505)
T TIGR00595 95 GLII 98 (505)
T ss_pred CEEE
Confidence 7766
No 463
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.30 E-value=0.18 Score=50.53 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccccC-CCeEEEEECccHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLA 107 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~~~-~~~~Ivv~p~r~l~ 107 (697)
..+|.||||||||-++-.++....+.. ...+++|+|.....
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 468899999999966665554443332 23578888887654
No 464
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.30 E-value=0.21 Score=49.63 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999988876544
No 465
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.30 E-value=0.5 Score=45.31 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999998887653
No 466
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.30 E-value=0.15 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|+||+|+|||+++-.+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 467899999999999999877665443
No 467
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.28 E-value=1 Score=44.90 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.|+||||++-.+.-.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988776643
No 468
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.28 E-value=1.3 Score=46.37 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=37.0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
|.|-..-.+.+.+...+......++|+|++| .++......+++.+.....+..+|++|
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 4444444556666666777889999999999 455556666666655544444455533
No 469
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.26 E-value=0.43 Score=55.50 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc---ccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEe
Q 005436 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG---WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (697)
Q Consensus 52 ~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~---~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g 128 (697)
.+.|.+++.. ....++|.|..|||||+.+-.-+.... ......++++|-|+..+. ++.+++.+.++..
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~-em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAR-EMKERVAKTLGKG------ 73 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH-HHHHHHHHHhCcc------
Confidence 4566666654 345689999999999955543332211 113356788888877665 5777777665421
Q ss_pred eEeecCCcCCCCCceEEEechHHHHHHHhcCC-C-C-CCCcEEEEeCCC
Q 005436 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-L-L-TKYSVIMVDEAH 174 (697)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~-l-~~~~~iIiDE~H 174 (697)
. ..++.|.|-..+-..+.... . + -.-.+-|+||..
T Consensus 74 ----------~-~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~ 111 (664)
T TIGR01074 74 ----------E-ARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETD 111 (664)
T ss_pred ----------c-cCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHH
Confidence 0 34577888877654443221 0 0 012245677765
No 470
>PLN03130 ABC transporter C family member; Provisional
Probab=92.26 E-value=0.3 Score=62.18 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..++.+-|+|+|||||||++-.+....
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 35688999999999999999888776543
No 471
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.26 E-value=0.18 Score=45.74 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=44.6
Q ss_pred hhccCCCCCCC---cEEEEecCc--cccccCCCC--eEEEEecCcccceeecCC-----------C--CcccccccccCH
Q 005436 325 EQVFSPTPRGK---RKVVISTNI--AETSLTLEG--IVYVVDSGFSKQRFYNPI-----------S--DIENLVVAPISK 384 (697)
Q Consensus 325 ~~v~~~f~~g~---~kilvaT~i--~e~Gvdip~--v~~VId~g~~k~~~yd~~-----------~--~~~~l~~~~~S~ 384 (697)
..+++.|.+.. -.|++++.- +.+|||+|+ .+.||-.|++-....|+. . ........+...
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34444444322 258888877 999999998 467777776432222221 0 000111224456
Q ss_pred HhHHHhhcccCCCCC
Q 005436 385 ASARQRAGRAGRVRP 399 (697)
Q Consensus 385 ~~~~Qr~GRaGR~~~ 399 (697)
....|-+||+=|...
T Consensus 114 ~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 114 RALAQAIGRAIRHKN 128 (142)
T ss_pred HHHHHHhCccccCcc
Confidence 678899999999943
No 472
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.25 E-value=1.1 Score=53.21 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.4
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
.+++.||||+|||+++-.+.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999997765443
No 473
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.22 E-value=0.14 Score=50.47 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988876544
No 474
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.20 E-value=0.25 Score=55.58 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce--e
Q 005436 50 PVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG--E 125 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~--~ 125 (697)
-..+++.++++++... +.++++.++-+|||.++-.++....-.....++++.|+...+..-...++...+..... .
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~ 95 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRR 95 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567899999999776 57999999999999766665554443455678999999999888777776654432111 0
Q ss_pred EEee-Eee-c----CCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC----cChhHHHHHHHHHHHhCC
Q 005436 126 EVGY-TIR-F----EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS----ISTDILLGLLKKIQRCRS 195 (697)
Q Consensus 126 ~~g~-~~~-~----~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~----~~~d~l~~~l~~~~~~~~ 195 (697)
.+.- ..+ . ..+... ...+.++....--.+ --..++++++||++... -..|.+....++......
T Consensus 96 ~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l-----~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~ 169 (557)
T PF05876_consen 96 KLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNL-----RSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGS 169 (557)
T ss_pred HhCchhhcccCCchhheecC-CCEEEEEeCCCCccc-----ccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhcc
Confidence 1110 000 0 001111 233444333211100 13467899999999542 223455555555544423
Q ss_pred CceEEEec-cccc-HHHHHHHhh
Q 005436 196 DLRLIISS-ATIE-AKSMSAFFH 216 (697)
Q Consensus 196 ~~~ii~~S-AT~~-~~~~~~~~~ 216 (697)
+.+++..| .|.. ...+...+.
T Consensus 170 ~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 170 NRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred CcEEEEeCCCCCCCCCHHHHHHH
Confidence 44444333 3333 345555544
No 475
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.5 Score=49.14 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=38.6
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
|-|-..-.+.+.+...+....++++|||+||. .+.....+++|.+-+-.++..+|+.|..
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 33333334555556667778899999999993 4555667777777665555655555443
No 476
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.19 E-value=0.53 Score=54.53 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH---HhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l---~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
+.+.|.+++... ...++|.|..|||||+.+-.-+ .+..-.+..+++++|-|++.+. ++.+|+...++...
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~-em~~Rl~~~l~~~~---- 75 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR-EMKERVAQTLGRKE---- 75 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHH-HHHHHHHHHhCccc----
Confidence 456677776653 4568888999999995543322 2221113456888888887765 57777777654210
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHHhcCC-C-CC-CCcEEEEeCCC
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-L-LT-KYSVIMVDEAH 174 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~-l~-~~~~iIiDE~H 174 (697)
...+.|+|-..+-..+.... . +. .-++-|+|+.+
T Consensus 76 -------------~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 76 -------------ARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred -------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 23467888877654433221 0 11 12345677755
No 477
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.18 E-value=0.21 Score=48.45 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988876654
No 478
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.16 E-value=0.23 Score=51.44 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
..+..++..+++++++|+|||||||++-.++..-. ...+++.+--+.++
T Consensus 134 ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip--~~~rivtIEdt~E~ 182 (312)
T COG0630 134 AYLWLAIEARKSIIICGGTASGKTTLLNALLDFIP--PEERIVTIEDTPEL 182 (312)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCC--chhcEEEEeccccc
Confidence 44788889999999999999999988877665432 34456666555444
No 479
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.16 E-value=0.42 Score=50.75 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.5
Q ss_pred CcEEEEeCCCcCCcChhHHHHHHHHHHH---hCCCceEEEecccc-cHHHHHHHhhc
Q 005436 165 YSVIMVDEAHERSISTDILLGLLKKIQR---CRSDLRLIISSATI-EAKSMSAFFHA 217 (697)
Q Consensus 165 ~~~iIiDE~Her~~~~d~l~~~l~~~~~---~~~~~~ii~~SAT~-~~~~~~~~~~~ 217 (697)
.-+||||-+..+.-..+++...+..... ...-..+|++|... ....+++.+.+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 5799999988666555666555554332 34457899999887 44555555543
No 480
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.14 E-value=0.28 Score=51.51 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=33.1
Q ss_pred HHHHHH-HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 55 RTAILY-LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 55 q~~i~~-~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
+.+++. ++..+.+++++|+|||||||++..++.... ...+.+.+-.+.++
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~--~~~riv~iEd~~El 217 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVA--PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCC--CCCcEEEECCccee
Confidence 334444 456678999999999999998876654432 33445666555555
No 481
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.12 E-value=0.27 Score=56.22 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.++++||.+|....+.++.+.|.+.+. +..+..+||++++.+|.+......+|+.+|+|.|-.+ .=..+++.
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~L 258 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDL 258 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCC
Confidence 467899999999999999999988751 2568899999999999999999999999999999543 23455666
Q ss_pred EEEE
Q 005436 355 VYVV 358 (697)
Q Consensus 355 ~~VI 358 (697)
..||
T Consensus 259 gLII 262 (665)
T PRK14873 259 GLVA 262 (665)
T ss_pred CEEE
Confidence 6655
No 482
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.12 E-value=0.5 Score=49.37 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=30.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~r 104 (697)
+..+..+.|+||+|+|||++..+++...... .+++++|+.--.
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4457899999999999998888777654321 124677776433
No 483
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.09 E-value=0.29 Score=44.26 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=48.7
Q ss_pred CHHHHhhccCCCCCCC-cEEEEecCccccccCCCC--eEEEEecCcccceeecCC-------------CCcccccccccC
Q 005436 320 SRAEQEQVFSPTPRGK-RKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPIS 383 (697)
Q Consensus 320 ~~~~r~~v~~~f~~g~-~kilvaT~i~e~Gvdip~--v~~VId~g~~k~~~yd~~-------------~~~~~l~~~~~S 383 (697)
...+...+++.|.+.. ..||++|.-+.+|||+|+ .+.||-.|++-....|+. .........+..
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a 111 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDA 111 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHH
Confidence 3334556666665433 379999988999999997 467777776432211210 001111112445
Q ss_pred HHhHHHhhcccCCCCC
Q 005436 384 KASARQRAGRAGRVRP 399 (697)
Q Consensus 384 ~~~~~Qr~GRaGR~~~ 399 (697)
.....|-+||+=|...
T Consensus 112 ~~~l~Qa~GR~iR~~~ 127 (141)
T smart00492 112 MRTLAQCVGRLIRGAN 127 (141)
T ss_pred HHHHHHHhCccccCcC
Confidence 6778899999999843
No 484
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.06 E-value=0.2 Score=57.07 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|+||+||||||++-.+....
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999988776544
No 485
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.02 E-value=0.22 Score=51.65 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.+.||.|+||||++-.+.-.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998877643
No 486
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=91.95 E-value=0.38 Score=61.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+-|+|+|||||||++-.+....
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4688999999999999999888776543
No 487
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.93 E-value=0.91 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++++.||+|+|||+++-.+...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999777655443
No 488
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.89 E-value=0.15 Score=52.81 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.++..+++.||+||||||++-.+.-.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999999999877543
No 489
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.85 E-value=0.3 Score=55.57 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+||+||||||++-.+....
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999999887765543
No 490
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.81 E-value=2.2 Score=47.23 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHhcCCEEEEEcCCCChHH-HHHHHHHHhccccCCCeEEEEECccHHHHH---HHHHHHHHHhCCc-ceeEEeeEee
Q 005436 58 ILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQ---AVASRVAEEMGVK-VGEEVGYTIR 132 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT-~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~---~~~~~~~~~~~~~-~~~~~g~~~~ 132 (697)
.++...+ +..+.--|--.||| +++|.+......-.+-++-|+++-|..+.- ++..++.+.++.+ +...-|..+-
T Consensus 196 ~l~~FKQ-kaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~ 274 (668)
T PHA03372 196 SLNIFKQ-KATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS 274 (668)
T ss_pred HHHHhhc-cceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE
Confidence 3444444 44555669999999 667766544433345667888887766543 3333455555433 1111111222
Q ss_pred cCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHH
Q 005436 133 FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSM 211 (697)
Q Consensus 133 ~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~ 211 (697)
+... .. ++.++++|- ...+.. =+++++++||||| -+..+.+..++-.+. ..+.|+|..|.|-..+.-
T Consensus 275 ~s~p-g~-Kst~~fasc------~n~NsiRGQ~fnll~VDEA~--FI~~~a~~tilgfm~--q~~~KiIfISS~Nsg~~s 342 (668)
T PHA03372 275 IDHR-GA-KSTALFASC------YNTNSIRGQNFHLLLVDEAH--FIKKDAFNTILGFLA--QNTTKIIFISSTNTTNDA 342 (668)
T ss_pred EecC-CC-cceeeehhh------ccCccccCCCCCEEEEehhh--ccCHHHHHHhhhhhc--ccCceEEEEeCCCCCCcc
Confidence 2211 11 222333331 001111 4678999999999 455566666665543 347899999998755555
Q ss_pred HHHhhc
Q 005436 212 SAFFHA 217 (697)
Q Consensus 212 ~~~~~~ 217 (697)
..|+.+
T Consensus 343 TSfL~~ 348 (668)
T PHA03372 343 TCFLTK 348 (668)
T ss_pred chHHHh
Confidence 555543
No 491
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.76 E-value=0.35 Score=54.64 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred cHHHHHH-HHHHHh-cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 51 VYKYRTA-ILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 51 i~~~q~~-i~~~l~-~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
..+.+.+ +.+++. .+..++++|||||||||.+..++.... ....+++-+-.|
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~-~~~~~i~tiEdp 353 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILN-TEEVNISTAEDP 353 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhC-CCCceEEEecCC
Confidence 3344333 344444 457889999999999988766554432 223344444444
No 492
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=91.75 E-value=0.57 Score=49.97 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGW 91 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~ 91 (697)
+..++.+-++||.|+||||++..+..-...
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv 590 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDV 590 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhc
Confidence 457899999999999999998877654433
No 493
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.73 E-value=0.17 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++++|++||||||++-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47899999999999988776554
No 494
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=0.57 Score=49.09 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=41.3
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
.|.|-....+.+.+...+....++++|||+||. ++.....+++|.+-+-.++..+|++|..
T Consensus 111 ~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 111 EIKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred ccCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 355555555666666667778899999999993 4555667777776655555656665544
No 495
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.61 E-value=0.35 Score=48.28 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988876543
No 496
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.56 E-value=0.35 Score=53.45 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHH-h-cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 50 PVYKYRTAILYLV-E-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 50 Pi~~~q~~i~~~l-~-~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
...+.+.+.+..+ . .+..++++|||||||||.+..++.... ..+..++.+--|.
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~-~~~~~iiTiEDpv 280 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN-TPERNILTVEDPV 280 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC-CCCCcEEEEcCCe
Confidence 3344444444443 3 345789999999999988876654432 2233455554443
No 497
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.56 E-value=0.37 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 458899999999999999988877644
No 498
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.51 E-value=0.6 Score=53.31 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|.|++||||||++-.++...
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4688999999999999999988776554
No 499
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.50 E-value=0.48 Score=44.28 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
...+.+-.+......++|.|++|+||+ .+...++.......++.|.+-..
T Consensus 10 ~~~~~~~~~a~~~~pVlI~GE~GtGK~-~lA~~IH~~s~r~~~pfi~vnc~ 59 (168)
T PF00158_consen 10 RLREQAKRAASSDLPVLITGETGTGKE-LLARAIHNNSPRKNGPFISVNCA 59 (168)
T ss_dssp HHHHHHHHHTTSTS-EEEECSTTSSHH-HHHHHHHHCSTTTTS-EEEEETT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcHH-HHHHHHHHhhhcccCCeEEEehh
Confidence 344555556667788999999999999 55556666554444555555443
No 500
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.92 Score=45.94 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=52.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc---------cccCCCeEEEEECccHHHHHHHHH---HHHHHhCCcceeEEee
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA---------GWADGGRVIACTQPRRLAVQAVAS---RVAEEMGVKVGEEVGY 129 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~---------~~~~~~~~Ivv~p~r~l~~~~~~~---~~~~~~~~~~~~~~g~ 129 (697)
+.++-.++|.|+.|.||||++....... .....++++||+-. +-...+.+ .+...+++..+..-..
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslE--l~re~~L~Rl~~v~a~mgLsPadvrn~ 163 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLE--LYREDILERLEPVRARMGLSPADVRNM 163 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEec--cChHHHHHHHHHHHHHcCCChHhhhhe
Confidence 3556667888999999997765543321 11234677877643 22223333 3555666655432221
Q ss_pred Ee-ecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCC
Q 005436 130 TI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH 174 (697)
Q Consensus 130 ~~-~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~H 174 (697)
.. ..+.. .. ..+ +..| .|.+.+.....-.+.++||||-.=
T Consensus 164 dltd~~Ga-a~-~~d--~l~p-kl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 164 DLTDVSGA-AD-ESD--VLSP-KLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred eccccccC-CC-ccc--cccH-HHHHHHHHHHHHhCCCeEEEcchh
Confidence 11 00010 00 111 2234 555554433334456778888643
Done!