Query 005436
Match_columns 697
No_of_seqs 478 out of 3112
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 01:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 8E-105 3E-109 918.0 66.2 644 28-696 73-734 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 4.7E-54 1.6E-58 430.1 25.1 249 443-695 5-254 (270)
3 2va8_A SSO2462, SKI2-type heli 100.0 2.6E-53 8.8E-58 492.9 32.2 529 28-590 9-625 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 3E-52 1E-56 482.3 34.4 508 50-594 25-612 (702)
5 2zj8_A DNA helicase, putative 100.0 3E-50 1E-54 466.9 30.4 549 29-618 3-644 (720)
6 4f92_B U5 small nuclear ribonu 100.0 2.8E-39 9.4E-44 397.5 27.5 441 51-517 80-621 (1724)
7 4f92_B U5 small nuclear ribonu 100.0 5E-38 1.7E-42 386.4 33.1 437 51-516 927-1451(1724)
8 3pey_A ATP-dependent RNA helic 100.0 3.3E-38 1.1E-42 340.4 27.8 339 27-410 5-357 (395)
9 3eiq_A Eukaryotic initiation f 100.0 3.6E-40 1.2E-44 358.3 12.4 336 27-413 40-391 (414)
10 2db3_A ATP-dependent RNA helic 100.0 3.5E-38 1.2E-42 343.8 25.5 334 28-409 57-407 (434)
11 3l9o_A ATP-dependent RNA helic 100.0 1.8E-38 6E-43 377.9 23.3 333 45-409 179-597 (1108)
12 1s2m_A Putative ATP-dependent 100.0 1.4E-37 4.7E-42 336.4 26.0 335 27-413 21-369 (400)
13 3fht_A ATP-dependent RNA helic 100.0 8.3E-38 2.9E-42 339.4 24.2 340 27-410 25-380 (412)
14 1xti_A Probable ATP-dependent 100.0 2.4E-37 8.3E-42 333.4 26.0 335 25-410 6-358 (391)
15 2j0s_A ATP-dependent RNA helic 100.0 2.9E-38 9.8E-43 343.0 18.1 338 28-412 38-386 (410)
16 2v1x_A ATP-dependent DNA helic 100.0 6.4E-38 2.2E-42 351.6 21.5 332 30-413 24-378 (591)
17 1hv8_A Putative ATP-dependent 100.0 2.4E-37 8.2E-42 330.2 24.0 332 28-413 7-349 (367)
18 3o8b_A HCV NS3 protease/helica 100.0 4.7E-38 1.6E-42 349.8 16.8 305 41-411 208-516 (666)
19 2i4i_A ATP-dependent RNA helic 100.0 9.8E-38 3.3E-42 339.5 18.5 335 28-413 16-387 (417)
20 3fmp_B ATP-dependent RNA helic 100.0 1.2E-37 4E-42 344.9 16.6 339 28-410 93-447 (479)
21 1fuu_A Yeast initiation factor 100.0 2.7E-38 9.3E-43 341.1 10.6 337 28-413 22-370 (394)
22 4a4z_A Antiviral helicase SKI2 100.0 1.2E-37 4E-42 367.8 13.8 329 48-407 37-490 (997)
23 1oyw_A RECQ helicase, ATP-depe 100.0 6.3E-37 2.2E-41 340.2 18.0 328 29-413 4-347 (523)
24 2xgj_A ATP-dependent RNA helic 100.0 4.1E-36 1.4E-40 354.6 23.5 332 46-409 82-499 (1010)
25 2z83_A Helicase/nucleoside tri 100.0 1E-36 3.4E-41 333.6 15.5 294 59-409 15-313 (459)
26 2z0m_A 337AA long hypothetical 100.0 5.7E-36 2E-40 315.7 19.0 299 49-407 15-321 (337)
27 2jlq_A Serine protease subunit 100.0 1.1E-36 3.7E-41 332.9 13.1 292 58-407 12-309 (451)
28 3fho_A ATP-dependent RNA helic 100.0 1E-36 3.5E-41 338.6 11.9 317 51-409 142-470 (508)
29 2whx_A Serine protease/ntpase/ 100.0 1.9E-36 6.5E-41 340.6 14.1 315 32-407 155-476 (618)
30 2ykg_A Probable ATP-dependent 100.0 3.2E-36 1.1E-40 349.2 15.8 337 49-411 12-518 (696)
31 3i5x_A ATP-dependent RNA helic 100.0 4.2E-35 1.4E-39 331.2 21.9 321 50-412 94-452 (563)
32 3sqw_A ATP-dependent RNA helic 100.0 1.1E-34 3.9E-39 328.0 21.4 319 51-411 44-400 (579)
33 3rc3_A ATP-dependent RNA helic 100.0 1.8E-34 6E-39 325.3 21.1 364 63-500 153-532 (677)
34 1wp9_A ATP-dependent RNA helic 100.0 2E-34 6.8E-39 319.5 20.5 336 48-413 7-479 (494)
35 4a2p_A RIG-I, retinoic acid in 100.0 4.1E-34 1.4E-38 322.9 20.9 346 48-413 5-512 (556)
36 3oiy_A Reverse gyrase helicase 100.0 9.4E-35 3.2E-39 315.6 13.6 308 41-410 12-366 (414)
37 3tbk_A RIG-I helicase domain; 100.0 2.6E-34 8.7E-39 324.4 16.7 345 49-413 3-511 (555)
38 1yks_A Genome polyprotein [con 100.0 7.4E-34 2.5E-38 309.0 19.0 290 61-407 4-297 (440)
39 2v6i_A RNA helicase; membrane, 100.0 1.3E-33 4.3E-38 306.5 17.3 286 64-407 1-288 (431)
40 4a2q_A RIG-I, retinoic acid in 100.0 6.8E-33 2.3E-37 324.5 21.6 346 48-413 246-753 (797)
41 2wv9_A Flavivirin protease NS2 100.0 5.1E-33 1.8E-37 314.5 17.4 289 62-407 238-531 (673)
42 4gl2_A Interferon-induced heli 100.0 1.1E-33 3.9E-38 328.0 10.7 338 46-406 3-515 (699)
43 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-31 3.8E-36 317.3 23.4 346 48-413 246-753 (936)
44 1gm5_A RECG; helicase, replica 100.0 7.3E-32 2.5E-36 308.6 9.1 306 47-407 365-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 3.8E-30 1.3E-34 308.3 23.8 305 49-409 602-922 (1151)
46 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-30 6.3E-35 309.0 16.0 274 47-364 75-388 (1104)
47 2fwr_A DNA repair protein RAD2 100.0 6.4E-31 2.2E-35 290.4 10.8 312 48-413 91-458 (472)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-30 6E-35 309.5 13.3 274 46-363 53-352 (1054)
49 1tf5_A Preprotein translocase 100.0 1.5E-28 5E-33 275.5 24.8 323 48-410 81-546 (844)
50 2oca_A DAR protein, ATP-depend 100.0 6.4E-30 2.2E-34 285.2 13.2 313 49-407 112-453 (510)
51 2fsf_A Preprotein translocase 100.0 1.6E-27 5.6E-32 266.2 21.5 322 49-410 73-584 (853)
52 3h1t_A Type I site-specific re 100.0 6.4E-28 2.2E-32 273.6 17.1 320 49-399 177-545 (590)
53 1nkt_A Preprotein translocase 99.9 9.4E-27 3.2E-31 260.2 25.0 323 48-409 109-617 (922)
54 3llm_A ATP-dependent RNA helic 99.9 2.4E-25 8.2E-30 221.5 18.2 178 39-219 50-231 (235)
55 3dmq_A RNA polymerase-associat 99.9 3.4E-25 1.2E-29 262.2 14.2 331 49-409 152-615 (968)
56 3eaq_A Heat resistant RNA depe 99.9 1.2E-25 4.1E-30 219.5 8.2 171 266-464 21-211 (212)
57 3i32_A Heat resistant RNA depe 99.9 6.5E-25 2.2E-29 224.3 6.1 173 269-469 21-213 (300)
58 1z63_A Helicase of the SNF2/RA 99.9 1.5E-23 5.2E-28 233.0 16.3 325 49-413 36-457 (500)
59 3jux_A Protein translocase sub 99.9 1.1E-21 3.6E-26 214.8 27.0 120 260-410 460-588 (822)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.8E-22 6.3E-27 236.9 22.2 320 50-407 271-707 (1038)
61 1z3i_X Similar to RAD54-like; 99.8 1.2E-19 4.1E-24 206.5 24.9 112 275-413 415-532 (644)
62 3mwy_W Chromo domain-containin 99.8 1E-20 3.5E-25 220.8 14.7 113 274-413 570-688 (800)
63 1qde_A EIF4A, translation init 99.8 1.2E-19 4.2E-24 178.9 16.2 180 27-208 14-198 (224)
64 2hjv_A ATP-dependent RNA helic 99.8 6.8E-20 2.3E-24 171.0 11.8 112 274-412 33-145 (163)
65 2rb4_A ATP-dependent RNA helic 99.8 6.3E-20 2.1E-24 173.5 11.4 142 247-412 8-150 (175)
66 1t5i_A C_terminal domain of A 99.8 1.1E-19 3.7E-24 171.0 10.5 132 247-409 6-138 (172)
67 1fuk_A Eukaryotic initiation f 99.8 7E-20 2.4E-24 171.4 7.8 117 268-411 22-139 (165)
68 1vec_A ATP-dependent RNA helic 99.8 5.9E-19 2E-23 171.6 13.6 179 28-209 4-190 (206)
69 1q0u_A Bstdead; DEAD protein, 99.8 9.6E-19 3.3E-23 171.9 14.6 179 28-208 5-193 (219)
70 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.6E-19 8.8E-24 170.5 9.9 111 275-412 45-156 (185)
71 3bor_A Human initiation factor 99.8 1.1E-18 3.7E-23 173.7 14.7 181 27-209 30-217 (237)
72 1c4o_A DNA nucleotide excision 99.8 5.4E-19 1.8E-23 200.9 13.6 113 275-409 438-550 (664)
73 2pl3_A Probable ATP-dependent 99.8 6.2E-19 2.1E-23 175.4 12.4 180 27-209 25-215 (236)
74 2d7d_A Uvrabc system protein B 99.8 4.6E-19 1.6E-23 201.3 12.6 113 275-409 444-556 (661)
75 3ber_A Probable ATP-dependent 99.8 5.4E-19 1.8E-23 177.1 11.6 180 27-209 43-230 (249)
76 3fe2_A Probable ATP-dependent 99.8 7.3E-19 2.5E-23 175.5 12.1 180 27-209 29-220 (242)
77 2p6n_A ATP-dependent RNA helic 99.8 6.9E-19 2.4E-23 168.3 10.4 115 267-409 46-161 (191)
78 2gxq_A Heat resistant RNA depe 99.8 1.4E-18 4.6E-23 169.2 11.8 184 29-216 3-197 (207)
79 1t6n_A Probable ATP-dependent 99.8 2.2E-18 7.4E-23 169.5 13.3 179 27-208 14-202 (220)
80 2oxc_A Probable ATP-dependent 99.8 1.7E-18 5.9E-23 171.4 11.8 184 27-215 24-216 (230)
81 3iuy_A Probable ATP-dependent 99.8 3.3E-18 1.1E-22 169.1 13.7 174 33-209 26-211 (228)
82 3fmo_B ATP-dependent RNA helic 99.8 7E-18 2.4E-22 173.6 15.6 185 28-216 93-289 (300)
83 2yjt_D ATP-dependent RNA helic 99.6 7.8E-20 2.7E-24 171.9 0.0 118 268-412 22-140 (170)
84 3ly5_A ATP-dependent RNA helic 99.7 1.7E-18 5.7E-23 174.9 8.5 158 50-209 76-245 (262)
85 3dkp_A Probable ATP-dependent 99.7 1.2E-17 4.1E-22 167.1 13.4 173 33-208 35-222 (245)
86 1wrb_A DJVLGB; RNA helicase, D 99.7 1.7E-17 5.7E-22 166.9 11.9 179 28-209 24-222 (253)
87 2ipc_A Preprotein translocase 99.7 4.4E-16 1.5E-20 173.8 23.7 121 48-174 77-212 (997)
88 3b6e_A Interferon-induced heli 99.7 4.2E-17 1.4E-21 159.6 9.7 159 45-205 28-216 (216)
89 2vl7_A XPD; helicase, unknown 99.6 9.1E-16 3.1E-20 170.8 13.2 128 261-405 370-518 (540)
90 1rif_A DAR protein, DNA helica 99.5 7E-15 2.4E-19 150.1 9.2 147 49-206 112-262 (282)
91 2fz4_A DNA repair protein RAD2 99.5 1.4E-13 4.9E-18 136.2 14.3 137 49-207 92-229 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 1.2E-12 4E-17 146.3 21.2 123 258-398 376-519 (551)
93 1z5z_A Helicase of the SNF2/RA 99.3 6E-13 2.1E-17 134.0 5.9 113 275-413 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.2 3.1E-10 1.1E-14 127.7 18.8 130 260-405 433-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.1 7.8E-06 2.7E-10 91.8 11.7 57 53-109 152-211 (608)
96 3e1s_A Exodeoxyribonuclease V, 97.8 5.6E-05 1.9E-09 83.9 10.3 60 48-108 187-246 (574)
97 3upu_A ATP-dependent DNA helic 97.7 0.00011 3.6E-09 79.8 10.5 58 51-108 26-88 (459)
98 2b8t_A Thymidine kinase; deoxy 97.5 0.00012 4.2E-09 70.5 6.8 115 63-204 10-124 (223)
99 3kl4_A SRP54, signal recogniti 97.4 0.00089 3E-08 71.0 12.1 133 66-216 98-235 (433)
100 3te6_A Regulatory protein SIR3 97.3 0.0014 4.8E-08 66.6 12.4 123 64-207 44-174 (318)
101 3ec2_A DNA replication protein 97.2 0.002 7E-08 59.8 11.5 38 64-101 37-74 (180)
102 2o0j_A Terminase, DNA packagin 97.2 0.0081 2.8E-07 62.7 16.1 153 48-216 161-324 (385)
103 2orw_A Thymidine kinase; TMTK, 97.1 0.0013 4.3E-08 61.5 8.6 39 64-103 2-40 (184)
104 1xx6_A Thymidine kinase; NESG, 97.0 0.0027 9.3E-08 59.5 9.9 39 64-103 7-45 (191)
105 3lfu_A DNA helicase II; SF1 he 97.0 0.0024 8.1E-08 72.5 10.9 68 50-120 9-79 (647)
106 3dm5_A SRP54, signal recogniti 97.0 0.0038 1.3E-07 66.2 11.3 132 66-216 101-236 (443)
107 2j9r_A Thymidine kinase; TK1, 96.8 0.0032 1.1E-07 59.6 8.6 40 64-104 27-66 (214)
108 3cpe_A Terminase, DNA packagin 96.8 0.012 4.2E-07 65.6 14.9 69 49-118 162-231 (592)
109 2chg_A Replication factor C sm 96.8 0.013 4.3E-07 55.9 12.7 35 54-88 25-61 (226)
110 3n70_A Transport activator; si 96.8 0.0076 2.6E-07 53.7 10.3 32 55-86 14-45 (145)
111 2kjq_A DNAA-related protein; s 96.7 0.00073 2.5E-08 60.8 3.2 26 64-89 35-60 (149)
112 1njg_A DNA polymerase III subu 96.7 0.011 3.9E-07 57.1 12.2 35 54-88 31-68 (250)
113 1fnn_A CDC6P, cell division co 96.6 0.0047 1.6E-07 65.0 8.9 116 67-206 46-169 (389)
114 4b3f_X DNA-binding protein smu 96.6 0.0035 1.2E-07 71.0 8.3 65 51-117 190-255 (646)
115 1vma_A Cell division protein F 96.6 0.0079 2.7E-07 60.9 10.1 122 65-206 104-234 (306)
116 3vkw_A Replicase large subunit 96.6 0.0034 1.2E-07 66.3 7.6 107 64-203 160-267 (446)
117 2bjv_A PSP operon transcriptio 96.5 0.0087 3E-07 59.3 10.1 42 59-101 23-64 (265)
118 2w58_A DNAI, primosome compone 96.5 0.0062 2.1E-07 57.6 8.2 35 66-101 55-89 (202)
119 1a5t_A Delta prime, HOLB; zinc 96.5 0.012 4.2E-07 60.6 10.9 52 151-204 95-146 (334)
120 1jr3_A DNA polymerase III subu 96.4 0.01 3.6E-07 61.9 10.2 52 150-203 105-156 (373)
121 2gk6_A Regulator of nonsense t 96.4 0.0062 2.1E-07 68.5 8.6 65 51-116 181-245 (624)
122 2px0_A Flagellar biosynthesis 96.3 0.016 5.6E-07 58.3 10.6 128 64-215 104-233 (296)
123 3co5_A Putative two-component 96.2 0.013 4.5E-07 52.0 8.3 30 54-83 16-45 (143)
124 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0073 2.5E-07 57.1 6.8 41 63-104 26-66 (219)
125 3bos_A Putative DNA replicatio 96.2 0.007 2.4E-07 58.7 7.1 26 64-89 51-76 (242)
126 1l8q_A Chromosomal replication 96.2 0.021 7.1E-07 58.5 10.5 36 65-101 37-72 (324)
127 2orv_A Thymidine kinase; TP4A 96.1 0.015 5.2E-07 55.5 8.6 40 64-104 18-57 (234)
128 2qgz_A Helicase loader, putati 96.1 0.0085 2.9E-07 60.9 7.0 38 65-102 152-189 (308)
129 2wjy_A Regulator of nonsense t 96.0 0.0093 3.2E-07 68.7 7.9 65 51-116 357-421 (800)
130 1iqp_A RFCS; clamp loader, ext 96.0 0.036 1.2E-06 56.5 11.7 33 56-88 35-69 (327)
131 2v1u_A Cell division control p 96.0 0.008 2.7E-07 63.1 6.7 25 64-88 43-67 (387)
132 3syl_A Protein CBBX; photosynt 96.0 0.016 5.6E-07 58.7 8.7 21 66-86 68-88 (309)
133 3e70_C DPA, signal recognition 96.0 0.019 6.5E-07 58.7 9.0 125 64-207 128-254 (328)
134 2xzl_A ATP-dependent helicase 95.9 0.0092 3.2E-07 68.8 7.1 66 51-117 361-426 (802)
135 2gno_A DNA polymerase III, gam 95.9 0.033 1.1E-06 56.3 10.4 51 151-203 69-119 (305)
136 1w4r_A Thymidine kinase; type 95.9 0.016 5.5E-07 53.9 7.1 39 64-103 19-57 (195)
137 2qen_A Walker-type ATPase; unk 95.8 0.026 9E-07 58.1 9.7 36 54-89 20-55 (350)
138 1ojl_A Transcriptional regulat 95.8 0.021 7.1E-07 57.9 8.5 28 60-87 20-47 (304)
139 1ls1_A Signal recognition part 95.8 0.05 1.7E-06 54.7 11.2 125 64-206 97-222 (295)
140 3u61_B DNA polymerase accessor 95.7 0.062 2.1E-06 54.8 12.0 33 56-88 36-71 (324)
141 2qby_B CDC6 homolog 3, cell di 95.7 0.015 5.2E-07 61.0 7.0 46 450-495 316-362 (384)
142 1sxj_D Activator 1 41 kDa subu 95.5 0.013 4.4E-07 60.7 5.6 33 56-88 47-81 (353)
143 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.039 1.3E-06 56.4 8.9 24 66-89 46-69 (322)
144 2zpa_A Uncharacterized protein 95.4 0.029 9.8E-07 62.4 8.1 111 52-207 177-289 (671)
145 1sxj_E Activator 1 40 kDa subu 95.3 0.072 2.4E-06 55.1 10.8 42 162-205 132-173 (354)
146 2qby_A CDC6 homolog 1, cell di 95.3 0.017 5.7E-07 60.5 6.0 24 65-88 45-68 (386)
147 1w5s_A Origin recognition comp 95.3 0.013 4.3E-07 62.2 4.9 43 451-494 349-395 (412)
148 2r6a_A DNAB helicase, replicat 95.2 0.024 8.1E-07 61.1 6.9 49 55-103 193-241 (454)
149 1sxj_C Activator 1 40 kDa subu 95.2 0.044 1.5E-06 56.5 8.6 33 56-88 35-69 (340)
150 1hqc_A RUVB; extended AAA-ATPa 95.2 0.12 4.2E-06 52.5 11.8 24 65-88 38-61 (324)
151 3h4m_A Proteasome-activating n 95.2 0.03 1E-06 56.0 7.0 26 63-88 49-74 (285)
152 2z4s_A Chromosomal replication 95.1 0.12 4.1E-06 55.2 11.8 37 65-101 130-167 (440)
153 3b9p_A CG5977-PA, isoform A; A 95.1 0.07 2.4E-06 53.7 9.5 24 65-88 54-77 (297)
154 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.021 7.2E-07 55.0 5.3 41 62-103 20-60 (235)
155 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.059 2E-06 53.0 8.6 25 64-88 38-62 (262)
156 3pfi_A Holliday junction ATP-d 95.0 0.11 3.8E-06 53.2 10.9 23 66-88 56-78 (338)
157 3vfd_A Spastin; ATPase, microt 94.9 0.065 2.2E-06 56.3 9.1 24 65-88 148-171 (389)
158 1sxj_B Activator 1 37 kDa subu 94.9 0.054 1.8E-06 55.1 8.3 33 56-88 31-65 (323)
159 2fna_A Conserved hypothetical 94.8 0.38 1.3E-05 49.3 14.4 32 56-89 23-54 (357)
160 3eie_A Vacuolar protein sortin 94.6 0.049 1.7E-06 55.6 6.9 24 65-88 51-74 (322)
161 1sxj_A Activator 1 95 kDa subu 94.6 0.14 4.7E-06 56.1 10.9 24 66-89 78-101 (516)
162 2ffh_A Protein (FFH); SRP54, s 94.5 0.21 7.3E-06 52.7 11.7 124 65-206 98-222 (425)
163 1d2n_A N-ethylmaleimide-sensit 94.4 0.085 2.9E-06 52.3 7.9 23 66-88 65-87 (272)
164 2qp9_X Vacuolar protein sortin 94.3 0.072 2.5E-06 55.2 7.4 24 66-89 85-108 (355)
165 3k1j_A LON protease, ATP-depen 94.2 0.74 2.5E-05 51.2 15.9 37 53-89 48-84 (604)
166 2yhs_A FTSY, cell division pro 93.9 0.13 4.4E-06 55.1 8.5 42 64-106 292-334 (503)
167 1j8m_F SRP54, signal recogniti 93.8 0.14 4.7E-06 51.5 8.1 123 65-206 98-224 (297)
168 1uaa_A REP helicase, protein ( 93.8 0.09 3.1E-06 59.7 7.6 86 51-156 3-91 (673)
169 2eyu_A Twitching motility prot 93.8 0.038 1.3E-06 54.5 3.8 40 62-101 22-61 (261)
170 1xp8_A RECA protein, recombina 93.8 0.31 1E-05 50.5 10.9 42 62-104 71-112 (366)
171 2zan_A Vacuolar protein sortin 93.6 0.12 4E-06 55.4 7.6 25 65-89 167-191 (444)
172 3b85_A Phosphate starvation-in 93.6 0.054 1.8E-06 51.4 4.4 35 54-88 11-45 (208)
173 3hr8_A Protein RECA; alpha and 93.6 0.057 2E-06 55.6 4.9 44 62-106 58-101 (356)
174 1zu4_A FTSY; GTPase, signal re 93.4 0.5 1.7E-05 47.9 11.6 42 65-107 105-147 (320)
175 3jvv_A Twitching mobility prot 93.4 0.057 2E-06 55.8 4.6 42 62-103 120-161 (356)
176 2chq_A Replication factor C sm 93.4 0.094 3.2E-06 53.1 6.2 22 67-88 40-61 (319)
177 4b4t_J 26S protease regulatory 93.2 0.17 5.8E-06 52.8 7.7 25 65-89 182-206 (405)
178 2j37_W Signal recognition part 93.1 0.32 1.1E-05 52.5 10.0 121 67-206 103-225 (504)
179 1kgd_A CASK, peripheral plasma 92.9 0.064 2.2E-06 49.5 3.7 25 64-88 4-28 (180)
180 2zts_A Putative uncharacterize 92.7 0.058 2E-06 52.5 3.3 42 62-103 27-68 (251)
181 2ewv_A Twitching motility prot 92.7 0.064 2.2E-06 55.9 3.7 42 62-103 133-174 (372)
182 3pxi_A Negative regulator of g 92.6 0.15 5.2E-06 58.6 7.1 21 67-87 523-543 (758)
183 2gza_A Type IV secretion syste 92.6 0.1 3.4E-06 54.2 5.0 46 56-103 166-211 (361)
184 4b4t_H 26S protease regulatory 92.6 0.14 4.8E-06 54.2 6.1 26 64-89 242-267 (467)
185 2oap_1 GSPE-2, type II secreti 92.6 0.11 3.7E-06 56.5 5.5 33 56-88 251-283 (511)
186 3io5_A Recombination and repai 92.4 0.065 2.2E-06 53.8 3.2 54 63-122 27-81 (333)
187 2v3c_C SRP54, signal recogniti 92.4 0.06 2.1E-06 57.2 3.1 34 66-100 100-133 (432)
188 1p9r_A General secretion pathw 92.2 0.18 6E-06 53.3 6.4 40 63-103 165-204 (418)
189 3tr0_A Guanylate kinase, GMP k 92.2 0.08 2.7E-06 49.8 3.5 27 62-88 4-30 (205)
190 1lvg_A Guanylate kinase, GMP k 92.2 0.071 2.4E-06 50.1 3.0 25 64-88 3-27 (198)
191 2xxa_A Signal recognition part 92.1 0.46 1.6E-05 50.4 9.5 123 66-206 101-225 (433)
192 3b9q_A Chloroplast SRP recepto 92.0 0.16 5.5E-06 51.1 5.7 44 64-108 99-143 (302)
193 2ehv_A Hypothetical protein PH 92.0 0.08 2.7E-06 51.5 3.3 42 61-102 26-67 (251)
194 2ce7_A Cell division protein F 92.0 0.16 5.5E-06 54.5 5.9 23 66-88 50-72 (476)
195 2cvh_A DNA repair and recombin 92.0 0.1 3.5E-06 49.6 4.0 40 61-104 16-55 (220)
196 1pjr_A PCRA; DNA repair, DNA r 92.0 0.19 6.7E-06 57.3 6.9 68 50-120 11-81 (724)
197 1cr0_A DNA primase/helicase; R 91.9 0.11 3.8E-06 52.2 4.3 46 57-102 27-72 (296)
198 4b4t_M 26S protease regulatory 91.9 0.11 3.9E-06 54.8 4.4 25 65-89 215-239 (434)
199 1jbk_A CLPB protein; beta barr 91.8 0.19 6.4E-06 46.2 5.5 35 54-88 30-66 (195)
200 1n0w_A DNA repair protein RAD5 91.8 0.14 4.9E-06 49.4 4.8 42 62-103 21-67 (243)
201 3tau_A Guanylate kinase, GMP k 91.7 0.11 3.6E-06 49.3 3.6 26 63-88 6-31 (208)
202 2dr3_A UPF0273 protein PH0284; 91.7 0.12 4.1E-06 50.1 4.1 42 62-104 20-61 (247)
203 2pt7_A CAG-ALFA; ATPase, prote 91.7 0.12 4.2E-06 52.7 4.4 33 57-89 163-195 (330)
204 3ney_A 55 kDa erythrocyte memb 91.6 0.12 3.9E-06 48.5 3.7 25 64-88 18-42 (197)
205 3u4q_A ATP-dependent helicase/ 91.6 0.16 5.4E-06 61.7 5.8 69 48-119 8-81 (1232)
206 1znw_A Guanylate kinase, GMP k 91.4 0.12 4E-06 48.9 3.6 28 61-88 16-43 (207)
207 4b4t_L 26S protease subunit RP 91.4 0.19 6.4E-06 53.2 5.5 25 65-89 215-239 (437)
208 1z6g_A Guanylate kinase; struc 91.4 0.1 3.5E-06 49.9 3.2 28 62-89 20-47 (218)
209 3hu3_A Transitional endoplasmi 91.3 0.18 6.3E-06 54.4 5.5 25 64-88 237-261 (489)
210 1zp6_A Hypothetical protein AT 91.2 0.085 2.9E-06 49.0 2.4 27 61-87 5-31 (191)
211 4gp7_A Metallophosphoesterase; 91.1 0.072 2.5E-06 48.7 1.7 22 63-84 7-28 (171)
212 2p65_A Hypothetical protein PF 91.1 0.2 6.8E-06 45.9 4.8 33 56-88 32-66 (187)
213 3hgt_A HDA1 complex subunit 3; 91.0 0.84 2.9E-05 45.9 9.5 110 275-413 124-241 (328)
214 2j41_A Guanylate kinase; GMP, 91.0 0.13 4.4E-06 48.4 3.4 27 62-88 3-29 (207)
215 2og2_A Putative signal recogni 90.9 0.24 8.2E-06 51.1 5.6 42 65-107 157-199 (359)
216 4b4t_K 26S protease regulatory 90.9 0.23 8E-06 52.4 5.6 25 65-89 206-230 (428)
217 4b4t_I 26S protease regulatory 90.8 0.37 1.3E-05 50.4 6.9 25 65-89 216-240 (437)
218 3a00_A Guanylate kinase, GMP k 90.8 0.13 4.4E-06 47.7 3.1 24 65-88 1-24 (186)
219 3cmu_A Protein RECA, recombina 90.6 0.22 7.4E-06 62.2 5.7 43 62-105 1424-1466(2050)
220 1s96_A Guanylate kinase, GMP k 90.6 0.16 5.4E-06 48.5 3.6 29 61-89 12-40 (219)
221 2v9p_A Replication protein E1; 90.4 0.14 4.9E-06 51.4 3.3 32 58-89 119-150 (305)
222 3vaa_A Shikimate kinase, SK; s 90.2 0.18 6.1E-06 47.3 3.6 28 62-89 22-49 (199)
223 1rj9_A FTSY, signal recognitio 90.2 0.25 8.4E-06 49.8 4.8 37 64-101 101-137 (304)
224 1qvr_A CLPB protein; coiled co 90.0 0.72 2.5E-05 53.7 9.3 33 56-88 180-214 (854)
225 4a74_A DNA repair and recombin 89.6 0.25 8.7E-06 47.1 4.3 43 61-103 21-68 (231)
226 2z43_A DNA repair and recombin 89.6 0.27 9.2E-06 50.1 4.6 43 62-104 104-151 (324)
227 2qor_A Guanylate kinase; phosp 89.5 0.17 5.8E-06 47.6 2.9 28 62-89 9-36 (204)
228 3lnc_A Guanylate kinase, GMP k 89.5 0.12 4.2E-06 49.7 2.0 25 62-86 24-48 (231)
229 1ex7_A Guanylate kinase; subst 89.5 0.18 6.3E-06 46.7 3.0 24 66-89 2-25 (186)
230 1nlf_A Regulatory protein REPA 89.2 0.28 9.6E-06 48.7 4.4 43 62-104 27-78 (279)
231 1gm5_A RECG; helicase, replica 89.1 0.4 1.4E-05 54.9 6.1 78 276-358 417-495 (780)
232 3tif_A Uncharacterized ABC tra 89.1 0.18 6.3E-06 48.7 2.8 26 62-87 28-53 (235)
233 3umf_A Adenylate kinase; rossm 88.8 0.23 7.8E-06 47.3 3.2 28 62-89 26-53 (217)
234 3cf2_A TER ATPase, transitiona 88.8 0.44 1.5E-05 54.4 6.1 23 66-88 239-261 (806)
235 1g5t_A COB(I)alamin adenosyltr 88.7 0.62 2.1E-05 43.2 6.0 39 64-103 27-65 (196)
236 1htw_A HI0065; nucleotide-bind 88.7 0.2 6.8E-06 45.1 2.6 27 63-89 31-57 (158)
237 3a8t_A Adenylate isopentenyltr 88.7 0.22 7.4E-06 50.6 3.1 24 64-87 39-62 (339)
238 3bh0_A DNAB-like replicative h 88.7 0.31 1.1E-05 49.4 4.3 48 55-103 58-105 (315)
239 4eun_A Thermoresistant glucoki 88.6 0.28 9.5E-06 45.9 3.6 26 63-88 27-52 (200)
240 3exa_A TRNA delta(2)-isopenten 88.6 0.24 8.3E-06 49.6 3.3 24 65-88 3-26 (322)
241 3trf_A Shikimate kinase, SK; a 88.5 0.3 1E-05 44.9 3.8 25 65-89 5-29 (185)
242 1kag_A SKI, shikimate kinase I 88.4 0.26 8.8E-06 44.8 3.2 24 65-88 4-27 (173)
243 3lw7_A Adenylate kinase relate 88.3 0.25 8.7E-06 44.7 3.1 20 66-85 2-21 (179)
244 1v5w_A DMC1, meiotic recombina 88.3 0.4 1.4E-05 49.2 4.9 43 62-104 119-166 (343)
245 3c8u_A Fructokinase; YP_612366 88.1 0.23 8E-06 46.8 2.8 25 64-88 21-45 (208)
246 2cbz_A Multidrug resistance-as 88.1 0.23 7.9E-06 48.0 2.8 26 62-87 28-53 (237)
247 2qmh_A HPR kinase/phosphorylas 88.1 0.25 8.7E-06 45.9 2.9 24 64-87 33-56 (205)
248 2ze6_A Isopentenyl transferase 88.0 0.3 1E-05 47.8 3.6 22 67-88 3-24 (253)
249 2q6t_A DNAB replication FORK h 88.0 0.34 1.2E-05 51.7 4.3 65 56-122 191-256 (444)
250 3gfo_A Cobalt import ATP-bindi 87.8 0.24 8.2E-06 49.1 2.8 26 62-87 31-56 (275)
251 1kht_A Adenylate kinase; phosp 87.8 0.33 1.1E-05 44.7 3.6 24 65-88 3-26 (192)
252 4ag6_A VIRB4 ATPase, type IV s 87.6 0.41 1.4E-05 50.2 4.6 42 63-105 33-74 (392)
253 2pcj_A ABC transporter, lipopr 87.6 0.25 8.5E-06 47.3 2.6 26 62-87 27-52 (224)
254 1zd8_A GTP:AMP phosphotransfer 87.5 0.38 1.3E-05 46.0 4.0 27 63-89 5-31 (227)
255 3kb2_A SPBC2 prophage-derived 87.5 0.37 1.3E-05 43.5 3.7 22 67-88 3-24 (173)
256 1qhx_A CPT, protein (chloramph 87.4 0.37 1.3E-05 43.9 3.6 25 65-89 3-27 (178)
257 1ye8_A Protein THEP1, hypothet 87.4 0.35 1.2E-05 44.4 3.5 22 67-88 2-23 (178)
258 1e9r_A Conjugal transfer prote 87.3 0.34 1.2E-05 51.6 3.8 42 64-106 52-93 (437)
259 3foz_A TRNA delta(2)-isopenten 87.3 0.33 1.1E-05 48.6 3.3 23 66-88 11-33 (316)
260 1sgw_A Putative ABC transporte 87.2 0.25 8.6E-06 46.9 2.4 26 62-87 32-57 (214)
261 2ff7_A Alpha-hemolysin translo 87.2 0.28 9.6E-06 47.8 2.8 27 62-88 32-58 (247)
262 2zu0_C Probable ATP-dependent 87.2 0.3 1E-05 48.2 3.0 26 62-87 43-68 (267)
263 2pze_A Cystic fibrosis transme 87.1 0.29 9.8E-06 47.1 2.8 27 62-88 31-57 (229)
264 3nh6_A ATP-binding cassette SU 87.1 0.21 7.1E-06 50.3 1.8 26 62-87 77-102 (306)
265 2bdt_A BH3686; alpha-beta prot 87.1 0.27 9.3E-06 45.4 2.5 22 66-87 3-24 (189)
266 4a1f_A DNAB helicase, replicat 87.0 0.43 1.5E-05 48.7 4.1 57 55-114 36-92 (338)
267 3cm0_A Adenylate kinase; ATP-b 87.0 0.28 9.7E-06 45.1 2.6 25 64-88 3-27 (186)
268 2c95_A Adenylate kinase 1; tra 87.0 0.48 1.6E-05 43.9 4.2 28 62-89 6-33 (196)
269 2bwj_A Adenylate kinase 5; pho 87.0 0.49 1.7E-05 43.9 4.3 29 61-89 8-36 (199)
270 1knq_A Gluconate kinase; ALFA/ 86.9 0.33 1.1E-05 44.1 3.0 24 64-87 7-30 (175)
271 2r44_A Uncharacterized protein 86.9 0.48 1.6E-05 48.2 4.5 36 53-88 34-69 (331)
272 1mv5_A LMRA, multidrug resista 86.9 0.3 1E-05 47.4 2.8 26 62-87 25-50 (243)
273 1ofh_A ATP-dependent HSL prote 86.9 0.59 2E-05 46.9 5.1 24 65-88 50-73 (310)
274 3asz_A Uridine kinase; cytidin 86.8 0.32 1.1E-05 45.8 3.0 26 63-88 4-29 (211)
275 2d2e_A SUFC protein; ABC-ATPas 86.8 0.32 1.1E-05 47.5 2.9 26 62-87 26-51 (250)
276 2ghi_A Transport protein; mult 86.8 0.3 1E-05 47.9 2.8 27 62-88 43-69 (260)
277 3sr0_A Adenylate kinase; phosp 86.8 0.4 1.4E-05 45.2 3.5 23 67-89 2-24 (206)
278 3uie_A Adenylyl-sulfate kinase 86.7 0.44 1.5E-05 44.5 3.8 28 62-89 22-49 (200)
279 4g1u_C Hemin import ATP-bindin 86.7 0.31 1E-05 48.1 2.8 27 62-88 34-60 (266)
280 3bgw_A DNAB-like replicative h 86.7 0.37 1.3E-05 51.4 3.6 47 55-102 187-233 (444)
281 1g6h_A High-affinity branched- 86.7 0.31 1E-05 47.8 2.8 26 62-87 30-55 (257)
282 1pzn_A RAD51, DNA repair and r 86.7 0.42 1.4E-05 49.2 3.9 40 63-102 129-173 (349)
283 1ly1_A Polynucleotide kinase; 86.7 0.39 1.3E-05 43.8 3.3 21 67-87 4-24 (181)
284 1b0u_A Histidine permease; ABC 86.6 0.32 1.1E-05 47.8 2.9 26 62-87 29-54 (262)
285 1ji0_A ABC transporter; ATP bi 86.6 0.31 1.1E-05 47.2 2.8 26 62-87 29-54 (240)
286 2zr9_A Protein RECA, recombina 86.6 0.44 1.5E-05 49.0 4.0 43 61-104 57-99 (349)
287 3lda_A DNA repair protein RAD5 86.4 0.54 1.9E-05 49.2 4.7 41 63-103 176-221 (400)
288 1vpl_A ABC transporter, ATP-bi 86.4 0.34 1.1E-05 47.5 2.9 26 62-87 38-63 (256)
289 2olj_A Amino acid ABC transpor 86.4 0.34 1.2E-05 47.7 2.9 26 62-87 47-72 (263)
290 3iij_A Coilin-interacting nucl 86.4 0.39 1.3E-05 43.9 3.2 25 64-88 10-34 (180)
291 3tlx_A Adenylate kinase 2; str 86.1 0.51 1.7E-05 45.8 4.0 26 64-89 28-53 (243)
292 1q57_A DNA primase/helicase; d 86.1 0.41 1.4E-05 52.1 3.7 51 53-103 230-280 (503)
293 2i3b_A HCR-ntpase, human cance 86.1 0.42 1.4E-05 44.4 3.2 25 65-89 1-25 (189)
294 1y63_A LMAJ004144AAA protein; 86.1 0.47 1.6E-05 43.7 3.6 25 64-88 9-33 (184)
295 1in4_A RUVB, holliday junction 86.0 0.54 1.8E-05 48.0 4.3 24 66-89 52-75 (334)
296 2v54_A DTMP kinase, thymidylat 86.0 0.4 1.4E-05 44.8 3.1 25 64-88 3-27 (204)
297 3tqc_A Pantothenate kinase; bi 86.0 1.2 4E-05 45.1 6.7 21 67-87 94-114 (321)
298 2qi9_C Vitamin B12 import ATP- 85.9 0.36 1.2E-05 47.0 2.8 27 62-88 23-49 (249)
299 2ixe_A Antigen peptide transpo 85.9 0.36 1.2E-05 47.7 2.8 26 62-87 42-67 (271)
300 1f2t_A RAD50 ABC-ATPase; DNA d 85.9 0.46 1.6E-05 42.2 3.3 21 66-86 24-44 (149)
301 2ihy_A ABC transporter, ATP-bi 85.9 0.36 1.2E-05 47.9 2.8 26 62-87 44-69 (279)
302 2nq2_C Hypothetical ABC transp 85.8 0.37 1.3E-05 47.1 2.8 26 62-87 28-53 (253)
303 2f1r_A Molybdopterin-guanine d 85.8 0.31 1.1E-05 44.4 2.1 23 66-88 3-25 (171)
304 3kta_A Chromosome segregation 85.7 0.5 1.7E-05 43.2 3.6 22 66-87 27-48 (182)
305 2ius_A DNA translocase FTSK; n 85.6 0.84 2.9E-05 49.2 5.7 26 62-87 164-189 (512)
306 2yz2_A Putative ABC transporte 85.6 0.38 1.3E-05 47.4 2.8 26 62-87 30-55 (266)
307 2rhm_A Putative kinase; P-loop 85.5 0.36 1.2E-05 44.6 2.5 25 64-88 4-28 (193)
308 1gvn_B Zeta; postsegregational 85.4 0.71 2.4E-05 46.0 4.8 25 65-89 33-57 (287)
309 3aez_A Pantothenate kinase; tr 85.3 0.47 1.6E-05 47.9 3.4 26 62-87 87-112 (312)
310 1ny5_A Transcriptional regulat 85.3 2.1 7.3E-05 44.6 8.6 37 63-100 158-194 (387)
311 1lv7_A FTSH; alpha/beta domain 85.2 0.86 2.9E-05 44.4 5.2 24 65-88 45-68 (257)
312 1xjc_A MOBB protein homolog; s 85.1 0.81 2.8E-05 41.5 4.5 24 66-89 5-28 (169)
313 3hws_A ATP-dependent CLP prote 85.1 0.83 2.9E-05 47.2 5.3 26 64-89 50-75 (363)
314 3crm_A TRNA delta(2)-isopenten 85.1 0.52 1.8E-05 47.6 3.5 23 66-88 6-28 (323)
315 1nij_A Hypothetical protein YJ 85.0 0.55 1.9E-05 47.6 3.8 23 66-88 5-27 (318)
316 1zuh_A Shikimate kinase; alpha 85.0 0.61 2.1E-05 42.0 3.7 24 66-89 8-31 (168)
317 3fb4_A Adenylate kinase; psych 84.9 0.55 1.9E-05 44.3 3.5 23 67-89 2-24 (216)
318 1u94_A RECA protein, recombina 84.9 0.63 2.1E-05 47.9 4.1 41 62-103 60-100 (356)
319 2qt1_A Nicotinamide riboside k 84.8 0.4 1.4E-05 45.0 2.5 26 62-87 18-43 (207)
320 3cf0_A Transitional endoplasmi 84.8 0.98 3.4E-05 45.3 5.5 27 63-89 47-73 (301)
321 2bbw_A Adenylate kinase 4, AK4 84.8 0.57 2E-05 45.4 3.7 24 65-88 27-50 (246)
322 3dl0_A Adenylate kinase; phosp 84.8 0.6 2E-05 44.1 3.7 23 67-89 2-24 (216)
323 3t61_A Gluconokinase; PSI-biol 84.7 0.47 1.6E-05 44.3 2.9 23 66-88 19-41 (202)
324 1cke_A CK, MSSA, protein (cyti 84.7 0.57 2E-05 44.6 3.6 24 65-88 5-28 (227)
325 4eaq_A DTMP kinase, thymidylat 84.6 0.85 2.9E-05 43.7 4.7 26 64-89 25-50 (229)
326 2i1q_A DNA repair and recombin 84.6 0.59 2E-05 47.4 3.8 28 62-89 95-122 (322)
327 3d3q_A TRNA delta(2)-isopenten 84.5 0.56 1.9E-05 47.7 3.5 23 66-88 8-30 (340)
328 1c4o_A DNA nucleotide excision 84.5 1.8 6.1E-05 48.7 8.0 58 58-120 20-78 (664)
329 3fvq_A Fe(3+) IONS import ATP- 84.5 0.45 1.6E-05 48.9 2.8 26 62-87 27-52 (359)
330 1np6_A Molybdopterin-guanine d 84.3 1.1 3.9E-05 40.8 5.2 24 65-88 6-29 (174)
331 2onk_A Molybdate/tungstate ABC 84.3 0.49 1.7E-05 45.8 2.9 25 63-88 23-47 (240)
332 2yvu_A Probable adenylyl-sulfa 84.1 0.8 2.7E-05 42.1 4.2 26 64-89 12-37 (186)
333 1tev_A UMP-CMP kinase; ploop, 84.1 0.6 2.1E-05 43.0 3.4 24 65-88 3-26 (196)
334 3nbx_X ATPase RAVA; AAA+ ATPas 84.1 0.8 2.7E-05 49.5 4.7 35 53-87 29-63 (500)
335 1m7g_A Adenylylsulfate kinase; 84.1 0.73 2.5E-05 43.4 4.0 26 62-87 22-47 (211)
336 1nks_A Adenylate kinase; therm 84.0 0.57 2E-05 43.1 3.2 22 67-88 3-24 (194)
337 1z47_A CYSA, putative ABC-tran 83.9 0.51 1.7E-05 48.5 2.9 26 62-87 38-63 (355)
338 2pez_A Bifunctional 3'-phospho 83.9 0.56 1.9E-05 42.8 3.0 24 64-87 4-27 (179)
339 2jaq_A Deoxyguanosine kinase; 83.9 0.61 2.1E-05 43.4 3.3 23 67-89 2-24 (205)
340 1tf7_A KAIC; homohexamer, hexa 83.8 0.51 1.7E-05 51.6 3.1 26 61-86 35-60 (525)
341 2plr_A DTMP kinase, probable t 83.8 0.59 2E-05 43.8 3.2 25 65-89 4-28 (213)
342 2bbs_A Cystic fibrosis transme 83.7 0.49 1.7E-05 47.2 2.7 25 63-87 62-86 (290)
343 3rlf_A Maltose/maltodextrin im 83.7 0.54 1.8E-05 48.7 3.0 26 62-87 26-51 (381)
344 1aky_A Adenylate kinase; ATP:A 83.7 0.76 2.6E-05 43.6 3.9 25 65-89 4-28 (220)
345 2yyz_A Sugar ABC transporter, 83.2 0.57 2E-05 48.2 3.0 26 62-87 26-51 (359)
346 1zak_A Adenylate kinase; ATP:A 83.2 0.62 2.1E-05 44.3 3.1 25 65-89 5-29 (222)
347 1tue_A Replication protein E1; 83.2 0.7 2.4E-05 43.2 3.3 21 66-86 59-79 (212)
348 1rz3_A Hypothetical protein rb 83.2 1.1 3.9E-05 41.7 4.9 23 65-87 22-44 (201)
349 2l8b_A Protein TRAI, DNA helic 83.1 5.3 0.00018 36.3 8.9 59 48-106 32-92 (189)
350 2it1_A 362AA long hypothetical 83.1 0.59 2E-05 48.2 3.0 26 62-87 26-51 (362)
351 2jeo_A Uridine-cytidine kinase 83.0 0.59 2E-05 45.3 2.9 26 62-87 22-47 (245)
352 3eph_A TRNA isopentenyltransfe 82.8 0.66 2.2E-05 48.3 3.2 23 66-88 3-25 (409)
353 2wwf_A Thymidilate kinase, put 82.8 0.74 2.5E-05 43.2 3.4 25 64-88 9-33 (212)
354 1nn5_A Similar to deoxythymidy 82.7 0.72 2.5E-05 43.4 3.3 26 63-88 7-32 (215)
355 3d31_A Sulfate/molybdate ABC t 82.7 0.53 1.8E-05 48.3 2.5 26 62-87 23-48 (348)
356 1ukz_A Uridylate kinase; trans 82.7 0.83 2.9E-05 42.6 3.7 24 66-89 16-39 (203)
357 3gd7_A Fusion complex of cysti 82.7 0.59 2E-05 48.7 2.8 26 62-87 44-69 (390)
358 3im1_A Protein SNU246, PRE-mRN 82.7 12 0.0004 37.8 12.6 49 468-517 1-52 (328)
359 4fcw_A Chaperone protein CLPB; 82.6 1 3.5E-05 45.1 4.6 23 66-88 48-70 (311)
360 3cf2_A TER ATPase, transitiona 82.5 0.87 3E-05 52.0 4.4 24 66-89 512-535 (806)
361 2cdn_A Adenylate kinase; phosp 82.5 0.91 3.1E-05 42.3 3.9 24 66-89 21-44 (201)
362 1v43_A Sugar-binding transport 82.5 0.65 2.2E-05 48.1 3.0 26 62-87 34-59 (372)
363 2pjz_A Hypothetical protein ST 82.5 0.61 2.1E-05 45.8 2.7 25 62-87 28-52 (263)
364 2vhj_A Ntpase P4, P4; non- hyd 82.4 0.4 1.4E-05 48.3 1.4 27 62-88 120-146 (331)
365 3d8b_A Fidgetin-like protein 1 82.4 1.3 4.4E-05 45.6 5.3 24 65-88 117-140 (357)
366 4e22_A Cytidylate kinase; P-lo 82.3 0.82 2.8E-05 44.5 3.6 27 63-89 25-51 (252)
367 1ixz_A ATP-dependent metallopr 82.3 0.75 2.6E-05 44.7 3.3 24 66-89 50-73 (254)
368 1c9k_A COBU, adenosylcobinamid 82.3 1.1 3.6E-05 41.1 4.0 46 68-119 2-47 (180)
369 1g29_1 MALK, maltose transport 82.2 0.64 2.2E-05 48.1 2.9 26 62-87 26-51 (372)
370 3cmw_A Protein RECA, recombina 82.1 0.97 3.3E-05 55.8 4.8 55 64-124 1430-1484(1706)
371 1e4v_A Adenylate kinase; trans 82.1 0.74 2.5E-05 43.4 3.1 23 67-89 2-24 (214)
372 2vp4_A Deoxynucleoside kinase; 82.0 0.69 2.4E-05 44.3 2.9 23 64-86 19-41 (230)
373 3nwj_A ATSK2; P loop, shikimat 81.9 0.9 3.1E-05 44.2 3.7 25 65-89 48-72 (250)
374 1qf9_A UMP/CMP kinase, protein 81.9 0.77 2.6E-05 42.2 3.1 23 66-88 7-29 (194)
375 1e6c_A Shikimate kinase; phosp 81.9 0.72 2.5E-05 41.6 2.9 23 66-88 3-25 (173)
376 3tui_C Methionine import ATP-b 81.9 0.71 2.4E-05 47.5 3.0 27 62-88 51-77 (366)
377 1tq4_A IIGP1, interferon-induc 81.9 1.2 4.2E-05 46.6 5.0 24 64-87 68-91 (413)
378 2z0h_A DTMP kinase, thymidylat 81.8 0.81 2.8E-05 42.3 3.3 22 67-88 2-23 (197)
379 1tf7_A KAIC; homohexamer, hexa 81.8 0.99 3.4E-05 49.3 4.4 42 61-103 277-318 (525)
380 1gtv_A TMK, thymidylate kinase 81.7 0.5 1.7E-05 44.5 1.7 23 67-89 2-24 (214)
381 3qf7_A RAD50; ABC-ATPase, ATPa 81.7 0.81 2.8E-05 47.3 3.5 20 67-86 25-44 (365)
382 2pt5_A Shikimate kinase, SK; a 81.4 0.84 2.9E-05 41.0 3.1 22 67-88 2-23 (168)
383 1via_A Shikimate kinase; struc 81.4 0.88 3E-05 41.3 3.3 23 67-89 6-28 (175)
384 1ak2_A Adenylate kinase isoenz 81.4 1 3.5E-05 43.1 3.9 25 65-89 16-40 (233)
385 3uk6_A RUVB-like 2; hexameric 81.3 1.3 4.5E-05 45.6 5.0 24 66-89 71-94 (368)
386 2xb4_A Adenylate kinase; ATP-b 81.2 0.88 3E-05 43.3 3.3 23 67-89 2-24 (223)
387 2r2a_A Uncharacterized protein 81.2 1.3 4.4E-05 41.4 4.3 23 67-89 7-29 (199)
388 2pbr_A DTMP kinase, thymidylat 81.1 0.88 3E-05 41.9 3.2 21 67-87 2-22 (195)
389 2vli_A Antibiotic resistance p 81.1 0.81 2.8E-05 41.7 2.9 24 65-88 5-28 (183)
390 1oxx_K GLCV, glucose, ABC tran 81.1 0.54 1.9E-05 48.3 1.8 26 62-87 28-53 (353)
391 2iyv_A Shikimate kinase, SK; t 81.0 0.91 3.1E-05 41.5 3.2 23 66-88 3-25 (184)
392 3t15_A Ribulose bisphosphate c 81.0 0.92 3.2E-05 45.3 3.5 24 66-89 37-60 (293)
393 3be4_A Adenylate kinase; malar 81.0 1.1 3.8E-05 42.3 4.0 25 65-89 5-29 (217)
394 3cr8_A Sulfate adenylyltranfer 80.7 1.1 3.9E-05 48.9 4.3 55 34-88 330-392 (552)
395 3pvs_A Replication-associated 80.7 1.2 4E-05 47.5 4.4 31 58-88 41-73 (447)
396 1sq5_A Pantothenate kinase; P- 80.7 2.2 7.7E-05 42.8 6.3 26 63-88 78-103 (308)
397 3a4m_A L-seryl-tRNA(SEC) kinas 80.6 0.88 3E-05 44.5 3.2 23 65-87 4-26 (260)
398 2if2_A Dephospho-COA kinase; a 80.5 0.99 3.4E-05 42.1 3.3 21 67-87 3-23 (204)
399 1jjv_A Dephospho-COA kinase; P 80.3 0.98 3.4E-05 42.2 3.2 20 67-86 4-23 (206)
400 1svm_A Large T antigen; AAA+ f 80.1 1 3.4E-05 46.7 3.5 27 62-88 166-192 (377)
401 4tmk_A Protein (thymidylate ki 80.1 1.9 6.4E-05 40.7 5.1 25 64-88 2-26 (213)
402 3qks_A DNA double-strand break 80.1 1 3.5E-05 42.2 3.3 22 65-86 23-44 (203)
403 3auy_A DNA double-strand break 80.0 0.9 3.1E-05 47.1 3.1 23 65-87 25-47 (371)
404 1iy2_A ATP-dependent metallopr 79.6 1 3.5E-05 44.4 3.3 24 66-89 74-97 (278)
405 3b5x_A Lipid A export ATP-bind 79.5 1.1 3.7E-05 49.6 3.8 28 62-89 366-393 (582)
406 2eyq_A TRCF, transcription-rep 79.4 2.4 8.2E-05 50.9 6.9 79 275-358 651-730 (1151)
407 1odf_A YGR205W, hypothetical 3 79.4 1 3.5E-05 44.9 3.1 23 65-87 31-53 (290)
408 2x8a_A Nuclear valosin-contain 79.1 1.1 3.7E-05 44.3 3.3 24 66-89 45-68 (274)
409 1vht_A Dephospho-COA kinase; s 79.0 0.97 3.3E-05 42.7 2.8 22 65-86 4-25 (218)
410 3sop_A Neuronal-specific septi 78.9 1.1 3.7E-05 44.2 3.1 23 67-89 4-26 (270)
411 4hlc_A DTMP kinase, thymidylat 78.9 2.1 7.3E-05 40.1 5.1 36 66-103 3-38 (205)
412 2yv5_A YJEQ protein; hydrolase 78.7 2 6.9E-05 43.0 5.2 27 62-89 162-188 (302)
413 3pxg_A Negative regulator of g 78.7 1.9 6.5E-05 46.2 5.3 32 56-87 190-223 (468)
414 1uf9_A TT1252 protein; P-loop, 78.6 1.2 4E-05 41.4 3.2 22 66-87 9-30 (203)
415 2npi_A Protein CLP1; CLP1-PCF1 78.6 0.94 3.2E-05 48.4 2.8 31 58-88 131-161 (460)
416 2qm8_A GTPase/ATPase; G protei 78.5 1.7 5.8E-05 44.3 4.6 26 63-88 53-78 (337)
417 4edh_A DTMP kinase, thymidylat 78.4 2.1 7.2E-05 40.4 4.9 39 64-103 5-43 (213)
418 2p5t_B PEZT; postsegregational 78.2 0.94 3.2E-05 44.1 2.4 25 65-89 32-56 (253)
419 1pui_A ENGB, probable GTP-bind 77.7 0.81 2.8E-05 42.8 1.8 23 63-85 24-46 (210)
420 3lv8_A DTMP kinase, thymidylat 77.7 2.4 8.1E-05 40.7 5.1 25 64-88 26-50 (236)
421 1lw7_A Transcriptional regulat 77.3 1.2 4.2E-05 46.0 3.2 27 62-88 165-193 (365)
422 4a82_A Cystic fibrosis transme 76.8 0.96 3.3E-05 50.0 2.3 26 62-87 364-389 (578)
423 1um8_A ATP-dependent CLP prote 76.7 1.4 4.8E-05 45.6 3.5 24 65-88 72-95 (376)
424 2c9o_A RUVB-like 1; hexameric 76.6 2.3 7.9E-05 45.4 5.2 23 66-88 64-86 (456)
425 3v9p_A DTMP kinase, thymidylat 76.4 1.3 4.4E-05 42.4 2.7 27 62-88 22-48 (227)
426 3b60_A Lipid A export ATP-bind 76.4 1.1 3.9E-05 49.5 2.7 27 62-88 366-392 (582)
427 3tmk_A Thymidylate kinase; pho 76.2 1.7 5.8E-05 41.1 3.5 26 64-89 4-29 (216)
428 2rcn_A Probable GTPase ENGC; Y 76.1 2 7E-05 44.0 4.4 26 63-88 213-238 (358)
429 2dyk_A GTP-binding protein; GT 76.1 1.6 5.6E-05 38.3 3.3 22 67-88 3-24 (161)
430 3oiy_A Reverse gyrase helicase 76.1 2.5 8.6E-05 44.3 5.3 79 274-358 62-144 (414)
431 3hjn_A DTMP kinase, thymidylat 75.8 2.5 8.5E-05 39.3 4.6 35 68-103 3-37 (197)
432 2www_A Methylmalonic aciduria 75.7 2.2 7.5E-05 43.7 4.5 24 65-88 74-97 (349)
433 3qkt_A DNA double-strand break 75.7 1.5 5.1E-05 44.8 3.3 22 65-86 23-44 (339)
434 3r20_A Cytidylate kinase; stru 75.4 2 6.9E-05 41.1 3.9 26 64-89 8-33 (233)
435 2grj_A Dephospho-COA kinase; T 75.3 1.6 5.6E-05 40.4 3.1 24 65-88 12-35 (192)
436 2qag_B Septin-6, protein NEDD5 75.2 1.3 4.4E-05 46.6 2.6 31 57-87 32-64 (427)
437 3qf4_B Uncharacterized ABC tra 75.1 0.97 3.3E-05 50.2 1.7 27 62-88 378-404 (598)
438 2r62_A Cell division protease 75.0 0.83 2.8E-05 44.8 1.1 24 65-88 44-67 (268)
439 2f9l_A RAB11B, member RAS onco 75.0 1.7 5.9E-05 40.1 3.3 22 67-88 7-28 (199)
440 1z2a_A RAS-related protein RAB 75.0 1.8 6.1E-05 38.4 3.3 22 67-88 7-28 (168)
441 2ce2_X GTPase HRAS; signaling 74.9 1.7 5.9E-05 38.2 3.1 22 67-88 5-26 (166)
442 3ice_A Transcription terminati 74.8 1.8 6.3E-05 44.6 3.5 29 59-87 168-196 (422)
443 3qf4_A ABC transporter, ATP-bi 74.8 1.2 4E-05 49.4 2.3 26 62-87 366-391 (587)
444 1oix_A RAS-related protein RAB 74.6 1.8 6E-05 39.9 3.2 22 67-88 31-52 (191)
445 2d7d_A Uvrabc system protein B 74.6 5.4 0.00018 44.7 7.7 58 58-120 24-82 (661)
446 2iut_A DNA translocase FTSK; n 74.5 3 0.0001 45.4 5.4 42 63-104 212-255 (574)
447 1ltq_A Polynucleotide kinase; 74.5 1.7 5.9E-05 43.3 3.3 22 66-87 3-24 (301)
448 1g8p_A Magnesium-chelatase 38 74.4 1.8 6E-05 44.2 3.4 25 64-88 44-68 (350)
449 2ged_A SR-beta, signal recogni 74.3 1.9 6.5E-05 39.5 3.3 24 65-88 48-71 (193)
450 1ky3_A GTP-binding protein YPT 73.6 2 7E-05 38.6 3.3 22 67-88 10-31 (182)
451 1z0j_A RAB-22, RAS-related pro 73.5 2.1 7.1E-05 38.0 3.3 23 67-89 8-30 (170)
452 2obl_A ESCN; ATPase, hydrolase 73.5 1.6 5.6E-05 44.6 2.8 30 60-89 66-95 (347)
453 1yrb_A ATP(GTP)binding protein 73.4 3.1 0.00011 40.3 4.8 34 66-101 15-48 (262)
454 1vec_A ATP-dependent RNA helic 73.3 21 0.00072 32.6 10.5 76 275-358 70-151 (206)
455 1ek0_A Protein (GTP-binding pr 73.2 2.1 7.2E-05 37.9 3.3 22 67-88 5-26 (170)
456 1kao_A RAP2A; GTP-binding prot 73.1 2.2 7.4E-05 37.6 3.3 22 67-88 5-26 (167)
457 1yqt_A RNAse L inhibitor; ATP- 73.1 1.7 5.8E-05 47.5 3.0 27 62-88 44-70 (538)
458 2wji_A Ferrous iron transport 72.9 2.2 7.5E-05 38.0 3.3 21 67-87 5-25 (165)
459 2yl4_A ATP-binding cassette SU 72.8 1.2 4.2E-05 49.4 1.9 27 62-88 367-393 (595)
460 1u8z_A RAS-related protein RAL 72.8 2.2 7.5E-05 37.7 3.3 22 67-88 6-27 (168)
461 4akg_A Glutathione S-transfera 72.8 2.9 9.8E-05 54.2 5.4 62 49-110 904-969 (2695)
462 1g16_A RAS-related protein SEC 72.7 2.1 7.2E-05 38.0 3.1 22 67-88 5-26 (170)
463 3m6a_A ATP-dependent protease 72.5 2.2 7.6E-05 46.6 3.8 26 64-89 107-132 (543)
464 1g41_A Heat shock protein HSLU 72.5 2.8 9.5E-05 44.3 4.4 25 65-89 50-74 (444)
465 2erx_A GTP-binding protein DI- 72.4 2.3 7.9E-05 37.7 3.3 21 67-87 5-25 (172)
466 1w36_B RECB, exodeoxyribonucle 72.1 4.4 0.00015 48.9 6.6 51 68-119 19-80 (1180)
467 1wms_A RAB-9, RAB9, RAS-relate 72.1 2.3 8E-05 38.0 3.3 22 67-88 9-30 (177)
468 2p67_A LAO/AO transport system 72.0 3.2 0.00011 42.4 4.6 25 64-88 55-79 (341)
469 1svi_A GTP-binding protein YSX 71.8 2.1 7.1E-05 39.2 2.9 23 65-87 23-45 (195)
470 1uj2_A Uridine-cytidine kinase 71.8 2.6 8.8E-05 40.8 3.7 23 66-88 23-45 (252)
471 1c1y_A RAS-related protein RAP 71.6 2.4 8.3E-05 37.4 3.3 21 67-87 5-25 (167)
472 1e69_A Chromosome segregation 71.6 1.8 6.3E-05 43.7 2.7 23 65-87 24-46 (322)
473 1z08_A RAS-related protein RAB 71.6 2.4 8.3E-05 37.6 3.3 22 67-88 8-29 (170)
474 3ake_A Cytidylate kinase; CMP 71.6 2.3 8E-05 39.4 3.3 22 67-88 4-25 (208)
475 2lkc_A Translation initiation 71.5 2.8 9.5E-05 37.5 3.7 25 64-88 7-31 (178)
476 3pxi_A Negative regulator of g 71.4 3.4 0.00011 47.3 5.1 34 55-88 189-224 (758)
477 1t6n_A Probable ATP-dependent 71.3 15 0.00052 34.1 9.1 76 276-358 82-163 (220)
478 2ocp_A DGK, deoxyguanosine kin 71.3 2.2 7.4E-05 41.0 3.0 24 65-88 2-25 (241)
479 3pqc_A Probable GTP-binding pr 71.3 2.2 7.4E-05 39.0 2.9 23 66-88 24-46 (195)
480 2gj8_A MNME, tRNA modification 71.2 2.2 7.6E-05 38.4 2.9 23 65-87 4-26 (172)
481 4f4c_A Multidrug resistance pr 71.1 1.3 4.6E-05 54.0 1.8 27 62-88 1102-1128(1321)
482 2f6r_A COA synthase, bifunctio 71.1 2.1 7.3E-05 42.3 3.0 21 66-86 76-96 (281)
483 3vkg_A Dynein heavy chain, cyt 71.0 4.4 0.00015 53.2 6.4 63 49-111 887-953 (3245)
484 2wsm_A Hydrogenase expression/ 70.9 2.6 8.8E-05 39.6 3.4 26 64-89 29-54 (221)
485 2dpy_A FLII, flagellum-specifi 70.8 2.1 7.2E-05 45.4 3.0 30 60-89 152-181 (438)
486 2wjg_A FEOB, ferrous iron tran 70.8 2.5 8.6E-05 38.3 3.3 21 67-87 9-29 (188)
487 1nrj_B SR-beta, signal recogni 70.8 2.5 8.4E-05 39.6 3.3 24 65-88 12-35 (218)
488 1r2q_A RAS-related protein RAB 70.4 2.7 9.1E-05 37.2 3.3 22 67-88 8-29 (170)
489 1p5z_B DCK, deoxycytidine kina 70.4 1.9 6.5E-05 42.1 2.4 23 64-86 23-45 (263)
490 3euj_A Chromosome partition pr 70.4 2.5 8.7E-05 45.1 3.5 23 66-88 30-52 (483)
491 1u0l_A Probable GTPase ENGC; p 70.4 3.5 0.00012 41.2 4.5 25 63-87 167-191 (301)
492 3lxx_A GTPase IMAP family memb 70.3 2.6 8.8E-05 40.4 3.3 23 66-88 30-52 (239)
493 1q3t_A Cytidylate kinase; nucl 70.2 2.8 9.6E-05 40.1 3.6 25 64-88 15-39 (236)
494 1qde_A EIF4A, translation init 70.0 19 0.00066 33.5 9.5 75 274-358 80-160 (224)
495 4f4c_A Multidrug resistance pr 69.9 1.6 5.4E-05 53.3 2.0 28 62-89 441-468 (1321)
496 2nzj_A GTP-binding protein REM 69.9 2.8 9.6E-05 37.4 3.3 20 67-86 6-25 (175)
497 3q85_A GTP-binding protein REM 69.8 2.8 9.5E-05 37.2 3.3 20 67-86 4-23 (169)
498 2y8e_A RAB-protein 6, GH09086P 69.7 2.7 9.1E-05 37.6 3.1 22 67-88 16-37 (179)
499 2r8r_A Sensor protein; KDPD, P 69.7 4.4 0.00015 38.4 4.6 36 67-103 8-44 (228)
500 3zvl_A Bifunctional polynucleo 69.6 2.7 9.2E-05 44.3 3.5 25 64-88 257-281 (416)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.4e-105 Score=918.04 Aligned_cols=644 Identities=45% Similarity=0.771 Sum_probs=582.2
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccC--CCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD--GGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~--~~~~Ivv~p~r~ 105 (697)
.|..++++... .++...|..+|++.+++++..++.++++++++||||||||+++|+++....... +.+++++.|+|.
T Consensus 73 ~f~~~~l~~~~-~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 73 PFTGREFTPKY-VDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp TTTCSBCCHHH-HHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CccccCCCHHH-HHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH
Confidence 36777777755 466677779999999999999999999999999999999999999987654433 444666666665
Q ss_pred HHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHH
Q 005436 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (697)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~ 185 (697)
++ .+++++++.+++..++..+||.++++..... .++|+++|+|.+++.+..+..+.++++|||||+|+|+++.+.+..
T Consensus 152 La-~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~-~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~ 229 (773)
T 2xau_A 152 AA-MSVAQRVAEEMDVKLGEEVGYSIRFENKTSN-KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp HH-HHHHHHHHHHTTCCBTTTEEEEETTEEECCT-TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCCchhheecceeccccccCC-CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHH
Confidence 55 4566789999999999999999888776666 799999999999999988888999999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHH
Q 005436 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (697)
Q Consensus 186 ~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (697)
+++.+...+++.++|+||||++.+.+.+||+..+ ++.++++.++++++|......++....+.
T Consensus 230 ~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~-----------------vi~v~gr~~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 230 LLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP-----------------LLAVPGRTYPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp HHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC-----------------EEECCCCCCCEEEECCSSCCSCHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC-----------------cccccCcccceEEEEecCCchhHHHHHHH
Confidence 9999988888999999999999999999998765 88899999999999999888888888888
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc--cCCCCCeEEEEecCCCCHHHHhhccCCCC-----CCCcEE
Q 005436 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS--KKNSSGLIILPLYSGLSRAEQEQVFSPTP-----RGKRKV 338 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~v~~~f~-----~g~~ki 338 (697)
.+..++....++++||||+++++++.+++.|.+..... .....++.+.++||+|++++|.++++.|+ +|.++|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 88888877778999999999999999999998643222 11234789999999999999999999999 999999
Q ss_pred EEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhhhCCCC
Q 005436 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAE 418 (697)
Q Consensus 339 lvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 418 (697)
|||||++++|||+|+|++|||+|+.|.+.||+..+++.+.+.|+|.++|.||+|||||..+|.||+||+++++...+.++
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSS
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995559999
Q ss_pred CCCcccccchhHHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHH
Q 005436 419 GIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMIL 498 (697)
Q Consensus 419 ~~pei~~~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~ 498 (697)
..|||++.+|.+++|+++.+|++++..|+|++||+.+.+..|++.|..+||||++|++| ++|+.|+.+|++|++||||+
T Consensus 453 ~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT-~lG~~~a~~pl~p~~~~~l~ 531 (773)
T 2xau_A 453 SYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLI 531 (773)
T ss_dssp CCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC-HHHHHHTTSSSCHHHHHHHH
T ss_pred CCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC-hhhhhhccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hhcccCChHHHHHHHHHhccccccccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcC---ch-hhHHHHhcCCHH
Q 005436 499 SSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC---KS-SHWCHKNFINYH 574 (697)
Q Consensus 499 ~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~ 574 (697)
.|..++|.+++++|||+||++++|..|.+.+++++.++.+|....|||++++|+|++|.... .. ..||++||||++
T Consensus 532 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~ 611 (773)
T 2xau_A 532 GSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYR 611 (773)
T ss_dssp HGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHH
T ss_pred hhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHH
Confidence 99999999999999999999999999999888899999999999999999999999997754 33 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCc----chHHHHHHHHHhhcccceeeeccccCCcc-EEEeeCCeeEEECCCCCCC
Q 005436 575 AMKKVIEIREQLRRIAQRIGIVMKSCE----SDMQVVRKAVTAGFFANACYSEAYSQSGM-YKTVRGSQEVYIHPSSVLF 649 (697)
Q Consensus 575 ~l~~~~~i~~ql~~~l~~~~~~~~~~~----~~~~~i~~~l~~g~~~niA~~~~~~~~~~-y~~~~~~~~v~ihpsS~l~ 649 (697)
+|+++.++|+||.++|++.++...++. .+++.+++||++|||+|+|+++ .++. |.++.++..|+|||+|+|
T Consensus 612 ~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~---~~~~~y~~~~~~~~~~ihp~s~l- 687 (773)
T 2xau_A 612 SLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKR---SGAKGYITVKDNQDVLIHPSTVL- 687 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEEC---CC--CEEETTTCCEEEECTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeec---cCCCcceEeeCCCEEEECCCccc-
Confidence 999999999999999999888765432 3467899999999999999988 3454 999888889999999999
Q ss_pred CCCCcEEEEEeecccchhhcccccccCHHHHHhHcccccccccCCCC
Q 005436 650 RVNPKWVIYHSLVSTDRQYMRNVISIDPSWLLEVAPHFYQQHRLNPI 696 (697)
Q Consensus 650 ~~~~~~vv~~e~~~t~~~~ir~vt~i~~~wl~~~~~~~~~~~~~~~~ 696 (697)
..+|+||||+|++.|++.|||+||+|+|+||.+++|++|..+++++.
T Consensus 688 ~~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 734 (773)
T 2xau_A 688 GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKG 734 (773)
T ss_dssp CTTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSCGGGCCSS
T ss_pred CCCCCEEEEEEeeccchhheeecccCCHHHHHHHHHHheeeccCCch
Confidence 44699999999999999999999999999999999999998888754
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-54 Score=430.09 Aligned_cols=249 Identities=41% Similarity=0.742 Sum_probs=227.6
Q ss_pred ccCCCC-CCCCCHHHHHHHHHHHHHcCCccCCCCCChHhhcccccCCCChhhHHHHHhhcccCChHHHHHHHHHhccccc
Q 005436 443 ILGFDW-PASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSI 521 (697)
Q Consensus 443 ~~~~~~-~~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~ 521 (697)
...|+| +|||+.+++.+|++.|..+||||++|+|| ++|+.|++||++|++||||+.|..++|.+++++|||+||++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 456788 99999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cccCcchhHHHHHHHHhhccCCCcHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Q 005436 522 WVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCE 601 (697)
Q Consensus 522 f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~ 601 (697)
|..|.+.++++++.|.+|....|||++++|+|++|.+.+.+.+||++||||+++|+++.++|+||.+++++.++...++.
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~ 163 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG 163 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred ccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Confidence 99999988899999999999999999999999999988778899999999999999999999999999999998877777
Q ss_pred chHHHHHHHHHhhcccceeeeccccCCccEEEeeCCeeEEECCCCCCCCCCCcEEEEEeecccchhhcccccccCHHHHH
Q 005436 602 SDMQVVRKAVTAGFFANACYSEAYSQSGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRNVISIDPSWLL 681 (697)
Q Consensus 602 ~~~~~i~~~l~~g~~~niA~~~~~~~~~~y~~~~~~~~v~ihpsS~l~~~~~~~vv~~e~~~t~~~~ir~vt~i~~~wl~ 681 (697)
.+.+.|++||++|||+|||+++ +++.|+++.+++.|+|||+|+|++.+|+||||+|++.|+|.|||+||+|+|+||.
T Consensus 164 ~~~~~i~~~L~aG~~~nvA~~~---~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~ 240 (270)
T 3i4u_A 164 KSTVRVQKAICSGFFRNAAKKD---PQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV 240 (270)
T ss_dssp TCTHHHHHHHHHHHGGGEEEEC---SSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred chHHHHHHHHHHHhHHHHheeC---CCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHH
Confidence 7888999999999999999987 5678999888889999999999998999999999999999999999999999999
Q ss_pred hHcccccccccCCC
Q 005436 682 EVAPHFYQQHRLNP 695 (697)
Q Consensus 682 ~~~~~~~~~~~~~~ 695 (697)
+++|++|+..+.+.
T Consensus 241 ~~ap~~~~~~~~~~ 254 (270)
T 3i4u_A 241 EFAPAFFKVLEVDL 254 (270)
T ss_dssp HHCTTTEECC----
T ss_pred HHhHHHhccccccc
Confidence 99999998887653
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-53 Score=492.89 Aligned_cols=529 Identities=18% Similarity=0.139 Sum_probs=361.2
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
.|.+++++......+ +...--.++++|.++++. +.++++++++||||||||+++++.+++.....++++++++|+|+|
T Consensus 9 ~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEII-KKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHH-HTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 366666666543333 222223678999999998 888999999999999999999888876544356788999999989
Q ss_pred HHHHHHHH-HHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHH
Q 005436 107 AVQAVASR-VAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILL 184 (697)
Q Consensus 107 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~ 184 (697)
+.|...+. ....+|.+++..+|+..+.+... . .++|+|+|||+|.+.+..++. +.++++|||||+|+.+ +.+. .
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~-~ 163 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL-K-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPER-G 163 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCGGG-G-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTT-H
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchhhc-C-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cccc-c
Confidence 88755443 12345788888888766555433 3 689999999999999888776 8999999999999754 2111 1
Q ss_pred HHHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeE--------------E
Q 005436 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--------------I 249 (697)
Q Consensus 185 ~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------------~ 249 (697)
..++.+....++.++|+||||+ +.+.+++|++... +..+++.+++. .
T Consensus 164 ~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~------------------~~~~~r~~~l~~~~~~~~~~~~~~~~ 225 (715)
T 2va8_A 164 PVVESVTIRAKRRNLLALSATISNYKQIAKWLGAEP------------------VATNWRPVPLIEGVIYPERKKKEYNV 225 (715)
T ss_dssp HHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEE------------------EECCCCSSCEEEEEEEECSSTTEEEE
T ss_pred hHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCc------------------cCCCCCCCCceEEEEecCCcccceee
Confidence 2222222222289999999999 5899999997432 23333333332 2
Q ss_pred EecCCCcchH--HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh-c-c--------------CC-----
Q 005436 250 HYVEEPVSDY--VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART-S-K--------------KN----- 306 (697)
Q Consensus 250 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~-~-~--------------~~----- 306 (697)
.|.+...... .......+...+ ..++++||||+++++++.+++.|.+.... . . ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 226 IFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp EETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred ecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 2322111110 122333333333 35789999999999999999999865321 0 0 00
Q ss_pred ------CCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccccccc
Q 005436 307 ------SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVA 380 (697)
Q Consensus 307 ------~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~ 380 (697)
.....+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||++ ...||+..+.. ..
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~ 376 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YD 376 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C---------------
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CC
Confidence 001248899999999999999999999999999999999999999999999985 34577544332 34
Q ss_pred ccCHHhHHHhhcccCCCC---CcEEEEccChhH-hhhhCC--CCCCCcccccchhH------HHHHHHHcCCC----Ccc
Q 005436 381 PISKASARQRAGRAGRVR---PGKCYRLYTEEY-FVKEIP--AEGIPEMQRSNLVS------CVIQLKALGID----NIL 444 (697)
Q Consensus 381 ~~S~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~~~~~~--~~~~pei~~~~l~~------~~L~l~~~~~~----~~~ 444 (697)
|.|.++|.||+|||||.+ +|.||+++++.. +...+. ....||+.+++|.. .++.+...|.- ++.
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 456 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLE 456 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHH
Confidence 999999999999999986 899999998665 222111 13568888887655 67777777632 222
Q ss_pred C---CCCCC-CCCHHHHHHHHHHHHHcCCccCCC---CCChHhhcccccCCCChhhHHHHHhhccc---CChHHHHHHHH
Q 005436 445 G---FDWPA-SPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL---GCSEEIITISA 514 (697)
Q Consensus 445 ~---~~~~~-~p~~~~~~~a~~~L~~lgald~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~---~c~~~~~~i~a 514 (697)
. ..|+. +|+...+..|++.|..+|+|+.++ .+| ++|+.|+++|++|+++++++.+... .|..+++.++|
T Consensus 457 ~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 535 (715)
T 2va8_A 457 NFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLA 535 (715)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhh
Confidence 2 24443 455667999999999999998764 799 8999999999999999999999887 79999999888
Q ss_pred Hhcc-ccccccCcchhHHHHHHHHh-----hccCC-C--------cHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHH
Q 005436 515 VLSI-QSIWVSGRGAQKELDEAKLR-----FAAAE-G--------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKV 579 (697)
Q Consensus 515 ~ls~-~~~f~~~~~~~~~~~~~~~~-----~~~~~-~--------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 579 (697)
+.+. ++++.++.... .....-.+ +.... . .++-..-+.+.|.+......+|.+.++....+..+
T Consensus 536 ~~~e~~~~~~r~~e~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l 614 (715)
T 2va8_A 536 FTPDGPLVSVGRNEEE-ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNM 614 (715)
T ss_dssp HSTTSCCCCCCHHHHH-HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCcccccCccChHHHH-HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHH
Confidence 7764 56776553322 12211110 00000 0 23334445567776555667898888877777666
Q ss_pred HHHHHHHHHHH
Q 005436 580 IEIREQLRRIA 590 (697)
Q Consensus 580 ~~i~~ql~~~l 590 (697)
.+....+.+.+
T Consensus 615 ~~~a~~l~~a~ 625 (715)
T 2va8_A 615 VETMDWLTYSA 625 (715)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3e-52 Score=482.28 Aligned_cols=508 Identities=18% Similarity=0.164 Sum_probs=367.1
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH-HHHHhCCcceeEEe
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR-VAEEMGVKVGEEVG 128 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~-~~~~~~~~~~~~~g 128 (697)
.++++|.++++.+.++++++++||||||||+++++.+++... .++++++++|+++|+.|...+. .....|.+++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 578899999999999999999999999999888877775532 4678999999999988765553 11234778888888
Q ss_pred eEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
+..+.+... . .++|+|+|||++.+.+..++. +.++++|||||+|+... ....+..++.++...+++.++|+||||
T Consensus 104 ~~~~~~~~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDEHL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (702)
T ss_dssp SCBCCSSCS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCcchhhc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCC
Confidence 766655432 3 689999999999999888776 89999999999996332 223444455555556788999999999
Q ss_pred c-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHH---------HHHHHHHHHHhcCC
Q 005436 206 I-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQ---------AAVSTVLLIHDKEP 275 (697)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 275 (697)
+ +.+.+++|++.. .+..+++.+++...+.......+.. .....+..... .
T Consensus 182 l~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 241 (702)
T 2p6r_A 182 APNVTEIAEWLDAD------------------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--E 241 (702)
T ss_dssp CTTHHHHHHHTTCE------------------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--T
T ss_pred cCCHHHHHHHhCCC------------------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--c
Confidence 9 589999999742 3445555555544332211100000 02222333332 5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCC----------C-----------CeEEEEecCCCCHHHHhhccCCCCCC
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNS----------S-----------GLIILPLYSGLSRAEQEQVFSPTPRG 334 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (697)
++++||||+++++++.+++.|.+......... . +..+.++||+|++++|..+++.|++|
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 78899999999999999999987643210000 0 12478899999999999999999999
Q ss_pred CcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCC---CcEEEEccChhHh
Q 005436 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEEYF 411 (697)
Q Consensus 335 ~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~ 411 (697)
+++|||||+++++|||+|++++||++ ...|| +. ..|.|.++|.||+|||||.+ +|.||+++++.++
T Consensus 322 ~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 322 NIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999985 45577 11 34999999999999999985 8999999998875
Q ss_pred hhhCC--CCCCCcccccchhH------HHHHHHHcCC-CC---ccCC---CCC----CCCCHHHHHHHHHHHHHcCCccC
Q 005436 412 VKEIP--AEGIPEMQRSNLVS------CVIQLKALGI-DN---ILGF---DWP----ASPPPEAMIRALEVLYSLGVLDD 472 (697)
Q Consensus 412 ~~~~~--~~~~pei~~~~l~~------~~L~l~~~~~-~~---~~~~---~~~----~~p~~~~~~~a~~~L~~lgald~ 472 (697)
+..+. ....||+.+++|.. .++.+...|. .+ +..+ .|+ ++|..+.+..|++.|..+|+|+.
T Consensus 391 ~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~ 470 (702)
T 2p6r_A 391 EIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVE 470 (702)
T ss_dssp HHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeE
Confidence 54222 24578888887665 6677777763 22 2111 232 37888999999999999999987
Q ss_pred C--CCCChHhhcccccCCCChhhHHHHHhhccc--CChHHHHHHHHHhcc-ccccccCcchhHHHHHHH----Hhh-ccC
Q 005436 473 D--AKLTSPTGFQVAEIPLEPMISKMILSSNEL--GCSEEIITISAVLSI-QSIWVSGRGAQKELDEAK----LRF-AAA 542 (697)
Q Consensus 473 ~--~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~--~c~~~~~~i~a~ls~-~~~f~~~~~~~~~~~~~~----~~~-~~~ 542 (697)
+ +.+| ++|+.|+.+|++|.++++++.+... .|..+++.++|+.+. .+++.++.+ ......- ..+ ..+
T Consensus 471 ~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e--~~~~~~~~~~~~~~~~~~ 547 (702)
T 2p6r_A 471 AAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD--SWVEEEAFRLRKELSYYP 547 (702)
T ss_dssp SSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT--HHHHHHHHHHGGGSSCCC
T ss_pred CCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch--HHHHHHHHhccccccCCc
Confidence 6 7899 7999999999999999999999988 899999999888775 467777655 2222211 112 111
Q ss_pred --CC-------cHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHHHHHH----HHHHHHHHHHcC
Q 005436 543 --EG-------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEI----REQLRRIAQRIG 594 (697)
Q Consensus 543 --~~-------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i----~~ql~~~l~~~~ 594 (697)
.. .++-..-+.+.|.+...-...|.+.++...-++.+.+. -+.+.+++...|
T Consensus 548 ~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g 612 (702)
T 2p6r_A 548 SDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVG 612 (702)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11 34445556677776555566788777765555554443 344444444454
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3e-50 Score=466.86 Aligned_cols=549 Identities=16% Similarity=0.117 Sum_probs=360.7
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
|.+++++..... ..+.+.--.++++|.++++. +.++++++++||||||||+++++.+++.....+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~-~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKS-TLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHH-HHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHH-HHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 556666665543 33334444789999999998 8899999999999999998887777655443467899999999998
Q ss_pred HHHHHHHHH--HHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhH
Q 005436 108 VQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDI 182 (697)
Q Consensus 108 ~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~ 182 (697)
.|...+ +. ..+|.+++..+|.. ..+..... .++|+|+||+++.+.+..++. +.++++|||||+|.... ....
T Consensus 82 ~q~~~~-~~~l~~~g~~v~~~~G~~-~~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (720)
T 2zj8_A 82 EEKFQE-FQDWEKIGLRVAMATGDY-DSKDEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGAT 158 (720)
T ss_dssp HHHHHH-TGGGGGGTCCEEEECSCS-SCCCGGGG-GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH
T ss_pred HHHHHH-HHHHHhcCCEEEEecCCC-CccccccC-CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHH
Confidence 875544 33 23577787777732 22222233 689999999999998887665 88999999999993321 1122
Q ss_pred HHHHHHHHHHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEE--------ecC
Q 005436 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH--------YVE 253 (697)
Q Consensus 183 l~~~l~~~~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~ 253 (697)
+..++.++ +.+.++|+||||+ +.+.+++|++... +....++.++... +..
T Consensus 159 ~~~ll~~l---~~~~~ii~lSATl~n~~~~~~~l~~~~------------------~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 159 LEVILAHM---LGKAQIIGLSATIGNPEELAEWLNAEL------------------IVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp HHHHHHHH---BTTBEEEEEECCCSCHHHHHHHTTEEE------------------EECCCCSSEEEEEEEETTEEEETT
T ss_pred HHHHHHHh---hcCCeEEEEcCCcCCHHHHHHHhCCcc------------------cCCCCCCCcceEEEEeCCeeeccc
Confidence 22233332 2389999999999 7899999997532 2333333333322 221
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC------------C------------CCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------------N------------SSG 309 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~------------~------------~~~ 309 (697)
... .........+..... .++++||||+++++++.++..|.+....... . ...
T Consensus 218 ~~~-~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 218 GSI-DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp SCE-EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred cch-hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 100 000111222222222 4688999999999999999999875322000 0 001
Q ss_pred eEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHH
Q 005436 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (697)
Q Consensus 310 ~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Q 389 (697)
..+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.+ ..|| ..+. .|.|.++|.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~~~Q 364 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIEVHQ 364 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCCC-----ccCCHHHHHH
Confidence 2489999999999999999999999999999999999999999999999854 3455 2221 3899999999
Q ss_pred hhcccCCCC---CcEEEEccChhHhhh---hCCCCCCCccccc-----chhHHHHHHHHcCCC-C---cc---CCCCC--
Q 005436 390 RAGRAGRVR---PGKCYRLYTEEYFVK---EIPAEGIPEMQRS-----NLVSCVIQLKALGID-N---IL---GFDWP-- 449 (697)
Q Consensus 390 r~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~pei~~~-----~l~~~~L~l~~~~~~-~---~~---~~~~~-- 449 (697)
|+|||||.+ +|.||.++++..+.. .+.....+++... .|...++.+...|.. + +. .+.|+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999985 799999999765322 1232333333322 355566666666532 1 11 12332
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCcc-CCC---CCChHhhcccccCCCChhhHHHHHhhccc----CChHHHHHHHHHhc
Q 005436 450 ----ASPPPEAMIRALEVLYSLGVLD-DDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVLS 517 (697)
Q Consensus 450 ----~~p~~~~~~~a~~~L~~lgald-~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~----~c~~~~~~i~a~ls 517 (697)
+++..+.+..+++.|...|+|+ +++ .+| ++|+.|+++|++|.++++++.+... .|..+++.|+|+++
T Consensus 445 ~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 523 (720)
T 2zj8_A 445 QRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTP 523 (720)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCc
Confidence 2334578999999999999998 665 689 7999999999999999999999887 89999999999988
Q ss_pred c-ccccccCcchhHHHHHHHH---hh----ccCC--C--------cHHHHHHHHHhhhhcCchhhHHHHhcCCHHHHHH-
Q 005436 518 I-QSIWVSGRGAQKELDEAKL---RF----AAAE--G--------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKK- 578 (697)
Q Consensus 518 ~-~~~f~~~~~~~~~~~~~~~---~~----~~~~--~--------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~- 578 (697)
. .++|.++.......+.... .+ -... . .++-..-+.+.|.+.......+.+..+....++.
T Consensus 524 e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~ 603 (720)
T 2zj8_A 524 DITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRI 603 (720)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHH
Confidence 6 6777765432222111111 01 0011 1 2233334445666544444556666665444443
Q ss_pred ---HHHHHHHHHHHHHHcCcccCCCcchHHHHHHHHHhhcccc
Q 005436 579 ---VIEIREQLRRIAQRIGIVMKSCESDMQVVRKAVTAGFFAN 618 (697)
Q Consensus 579 ---~~~i~~ql~~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~n 618 (697)
+..+-..+.+++...|... .......+.+++..|....
T Consensus 604 ~~~a~~l~~a~~~i~~~~g~~~--~~~~l~~l~~rl~~gv~~e 644 (720)
T 2zj8_A 604 VETAEWLVYSLKEIAKVLGAYE--IVDYLETLRVRVKYGIREE 644 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHcCCCcc
Confidence 3444444445555555321 0112233555555555543
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-39 Score=397.52 Aligned_cols=441 Identities=17% Similarity=0.164 Sum_probs=290.2
Q ss_pred cHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccc----------cCCCeEEEEECccHHHHHHHHHHH--HH
Q 005436 51 VYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGW----------ADGGRVIACTQPRRLAVQAVASRV--AE 117 (697)
Q Consensus 51 i~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----------~~~~~~Ivv~p~r~l~~~~~~~~~--~~ 117 (697)
+...|.++++. +.++++++|+||||||||..+...++.... ..+.++||++|+|+|+.|.....- ..
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45678877775 567899999999999999554444432211 235679999999999998665432 23
Q ss_pred HhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCc-ChhHHHHHHHHH---
Q 005436 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSI-STDILLGLLKKI--- 190 (697)
Q Consensus 118 ~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~--- 190 (697)
..|.+++..+|.... ...... .++|+|+|||++...+.... .++++++|||||+|..+- ....+..++.++
T Consensus 160 ~~gi~V~~~tGd~~~-~~~~~~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 160 TYGITVAELTGDHQL-CKEEIS-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp TTTCCEEECCSSCSS-CCTTGG-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCC-CccccC-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHH
Confidence 456777777773221 111222 68999999999865554432 378899999999992221 111333333332
Q ss_pred -HHhCCCceEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc--ceeeeEEEecCCCcchHH---HHH
Q 005436 191 -QRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPVSDYV---QAA 263 (697)
Q Consensus 191 -~~~~~~~~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~~~ 263 (697)
....+++|+|+||||+ |.+++++|++..+... ...+.. |+.|++.++......... ...
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~--------------~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~ 303 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKG--------------LFYFDNSFRPVPLEQTYVGITEKKAIKRFQIM 303 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHH--------------EEECCGGGCSSCEEEECCEECCCCHHHHHHHH
T ss_pred HHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCC--------------eEEECCCCccCccEEEEeccCCcchhhhhHHH
Confidence 2356789999999999 8999999997643110 222222 334444444332222111 111
Q ss_pred HHHHHH-HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC----------------------------CCCCeEEEE
Q 005436 264 VSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------------------NSSGLIILP 314 (697)
Q Consensus 264 ~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~v~~ 314 (697)
...+.. +.....++++||||++++.++.+++.|.+....... ......|++
T Consensus 304 ~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 304 NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 112222 223345678999999999999999999876432110 001234899
Q ss_pred ecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhccc
Q 005436 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (697)
Q Consensus 315 lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRa 394 (697)
|||+|++++|..+++.|++|.++|||||+++++|||+|++++||.. ...||+..+.. .+.|..+|.||+|||
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRA 455 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTB
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999953 45688776532 388999999999999
Q ss_pred CCC---CCcEEEEccChhH---hhhhCCCCCCC--cccccchhHHHHHHHHcC-CCCcc--------------------C
Q 005436 395 GRV---RPGKCYRLYTEEY---FVKEIPAEGIP--EMQRSNLVSCVIQLKALG-IDNIL--------------------G 445 (697)
Q Consensus 395 GR~---~~G~~~~l~~~~~---~~~~~~~~~~p--ei~~~~l~~~~L~l~~~~-~~~~~--------------------~ 445 (697)
||. ..|.++.+.++.+ |...+.. ..| .-+...+.+.++....+| +.+.. .
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~ll~~-~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~ 534 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSLLNQ-QLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTL 534 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHHTTT-CSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTT
T ss_pred cCCCCCCccEEEEEecchhHHHHHHHHcC-CCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhh
Confidence 998 4799999987653 3332222 111 112223444444433333 11110 0
Q ss_pred C----------CCCCCCCHHHHHHHHHHHHHcCCcc--C-CC--CCChHhhcccccCCCChhhHHHHHhhcccCChH-HH
Q 005436 446 F----------DWPASPPPEAMIRALEVLYSLGVLD--D-DA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCSE-EI 509 (697)
Q Consensus 446 ~----------~~~~~p~~~~~~~a~~~L~~lgald--~-~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~-~~ 509 (697)
+ +.++....+.+..++..|...|+|. + +| ..| ++|++||+++++|..++.+.......+.+ ++
T Consensus 535 y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T-~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~l 613 (1724)
T 4f92_B 535 YGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT-ELGRIASHYYITNDTVQTYNQLLKPTLSEIEL 613 (1724)
T ss_dssp TTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHH
T ss_pred hccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccc-hHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHH
Confidence 0 1111222345788999999999994 2 23 579 79999999999999999999887766544 56
Q ss_pred HHHHHHhc
Q 005436 510 ITISAVLS 517 (697)
Q Consensus 510 ~~i~a~ls 517 (697)
+.+.|..+
T Consensus 614 l~~is~s~ 621 (1724)
T 4f92_B 614 FRVFSLSS 621 (1724)
T ss_dssp HHHHHTCG
T ss_pred HHHHhCCh
Confidence 66655444
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5e-38 Score=386.36 Aligned_cols=437 Identities=16% Similarity=0.126 Sum_probs=290.5
Q ss_pred cHHHHHHHHHHH-hcCCEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHHHHHHHHHH---HHHHhCCccee
Q 005436 51 VYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGE 125 (697)
Q Consensus 51 i~~~q~~i~~~l-~~~~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l~~~~~~~~---~~~~~~~~~~~ 125 (697)
..+.|.+++..+ .++++++++||||||||++....++.... .+++++||++|+|+|+.|.+... +....|.+++.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 567888888887 46788999999999999666555544322 24568999999999998865443 23334556665
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcC---CCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHH---HH-hCCCc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD---PLLTKYSVIMVDEAHERSI-STDILLGLLKKI---QR-CRSDL 197 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~---~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~---~~-~~~~~ 197 (697)
.+|... .+..... .++|+|+|||++...+.+. ..++++++||+||+|..+- ....+..++.++ .. ..+++
T Consensus 1007 ltGd~~-~~~~~~~-~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1007 LTGETS-TDLKLLG-KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp CCSCHH-HHHHHHH-HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCC
T ss_pred EECCCC-cchhhcC-CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCc
Confidence 555211 1111112 5789999999987666542 2378999999999994321 122333333333 22 45689
Q ss_pred eEEEecccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEe--ccceeeeEEEecCCCcchHHHH---HH-HHHHHH
Q 005436 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV--EGRGFNVQIHYVEEPVSDYVQA---AV-STVLLI 270 (697)
Q Consensus 198 ~ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~---~~-~~~~~~ 270 (697)
|+|+||||+ |.+++++|++..... ...+ ..|+.+.+.+............ .. .....+
T Consensus 1085 riI~lSATl~N~~dla~WL~~~~~~---------------~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1085 RIVALSSSLSNAKDVAHWLGCSATS---------------TFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp EEEEEESCBTTHHHHHHHHTCCSTT---------------EEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHhCCCCCC---------------eEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 999999999 999999999865421 2222 2333344433322221111111 11 111223
Q ss_pred HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCC-------------------------CCCeEEEEecCCCCHHHHh
Q 005436 271 HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN-------------------------SSGLIILPLYSGLSRAEQE 325 (697)
Q Consensus 271 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~v~~lh~~l~~~~r~ 325 (697)
.....++++||||++++.++.++..|.......... .....|++|||+|++++|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 334567899999999999999998886654321100 0123489999999999999
Q ss_pred hccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEE
Q 005436 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKC 402 (697)
Q Consensus 326 ~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~ 402 (697)
.+++.|++|.++|||||+++++|||+|++.+||.. .+.||..... ..+.+..+|.||+|||||. ..|.|
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCcccc----cCCCCHHHHHHhhccccCCCCCCceEE
Confidence 99999999999999999999999999999999964 2346654432 2288999999999999998 47999
Q ss_pred EEccChh---HhhhhCCCCCCCccccc----chhHHHHHHHHcCC-CCc------cCCCC-------------CC-----
Q 005436 403 YRLYTEE---YFVKEIPAEGIPEMQRS----NLVSCVIQLKALGI-DNI------LGFDW-------------PA----- 450 (697)
Q Consensus 403 ~~l~~~~---~~~~~~~~~~~pei~~~----~l~~~~L~l~~~~~-~~~------~~~~~-------------~~----- 450 (697)
+.+..+. .|.. +... |+-..+ .+.+.++.....|. .+. ....| +.
T Consensus 1302 vll~~~~~~~~~~~-ll~~--~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~ 1378 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKK-FLYE--PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHR 1378 (1724)
T ss_dssp EEEEEGGGHHHHHH-HTTS--CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHH
T ss_pred EEEecchHHHHHHH-HhCC--CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchh
Confidence 9998754 3333 2222 222333 44555555555442 111 00011 11
Q ss_pred ---CCCHHHHHHHHHHHHHcCCcc--CCC--CCChHhhcccccCCCChhhHHHHHhhcccCCh-HHHHHHHHHh
Q 005436 451 ---SPPPEAMIRALEVLYSLGVLD--DDA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCS-EEIITISAVL 516 (697)
Q Consensus 451 ---~p~~~~~~~a~~~L~~lgald--~~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~-~~~~~i~a~l 516 (697)
....+.++++++.|.+.|+|. +++ ..| ++|++++.++++|..++++..+...++. .+++.+.+..
T Consensus 1379 ~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T-~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a 1451 (1724)
T 4f92_B 1379 HLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNA 1451 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeec-HHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCC
Confidence 112345788999999999995 444 358 8999999999999999999988776664 4566665543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.3e-38 Score=340.41 Aligned_cols=339 Identities=18% Similarity=0.187 Sum_probs=238.6
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEEC
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQ 102 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p 102 (697)
.+|.+++++......+.+. .--..+++|.++++.+.++ +++++++|||+|||.+....+..... ..+.++++++|
T Consensus 5 ~~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM-KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 5788888888877777664 3345788899999999887 89999999999999665555544322 23557899999
Q ss_pred ccHHHHHHHHHHHHHHh---CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 005436 103 PRRLAVQAVASRVAEEM---GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (697)
Q Consensus 103 ~r~l~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (697)
+++|+.|.... +.+.. +..+....| ......... ..+|+|+||+.+.+.+..... +.++++||+||||....
T Consensus 84 ~~~L~~q~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 84 SRELARQTLEV-VQEMGKFTKITSQLIVP--DSFEKNKQI-NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp SHHHHHHHHHH-HHHHTTTSCCCEEEEST--TSSCTTSCB-CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHH-HHHHhcccCeeEEEEec--CchhhhccC-CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 99998875443 33322 222222211 111222223 689999999999998876654 88999999999995443
Q ss_pred ChhHHHHHHHHHHHhCCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEecC
Q 005436 179 STDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVE 253 (697)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 253 (697)
...+...+........++.+++++|||++.. .+...+...+. .+...... ..+...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN----------------TLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE----------------EECCCGGGCSCTTEEEEEEE
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe----------------EEEccccccccccccEEEEE
Confidence 3444444444444456789999999999543 33332222110 11111111 112222222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
.... ......+..+......+++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++
T Consensus 224 ~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 224 CKNE---ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp CSSH---HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred cCch---HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 2211 223334445555556789999999999999999999775 6789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
|+.+|||||+++++|+|+|++++||+++..+ +...+.|..+|.||+|||||. .+|.|+.++++.+
T Consensus 292 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 292 GRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp TSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 9999999999999999999999999966521 122256999999999999999 7799999998643
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=358.34 Aligned_cols=336 Identities=16% Similarity=0.209 Sum_probs=225.9
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r 104 (697)
.+|..++++......+.+ ..-.+.+.+|.+++..+.+++++++++|||||||+++...+...... .+.++++++|++
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 356666777766555544 45567889999999999999999999999999997666555543322 456789999999
Q ss_pred HHHHHHHHHHHHH---HhCCcceeEEeeEee---cCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 005436 105 RLAVQAVASRVAE---EMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (697)
Q Consensus 105 ~l~~~~~~~~~~~---~~~~~~~~~~g~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (697)
+|+.|.. +.+.. ..+..++..+|.... ....... .++|+|+||+.|++.+..+.. +.++++||+||||+ .
T Consensus 119 ~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~ 195 (414)
T 3eiq_A 119 ELAQQIQ-KVVMALGDYMGASCHACIGGTNVRAEVQKLQME-APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-M 195 (414)
T ss_dssp HHHHHHH-HHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT-CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-H
T ss_pred HHHHHHH-HHHHHHhcccCceEEEEECCcchHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-h
Confidence 9987643 33333 234444433332111 1111113 689999999999998877665 78899999999994 2
Q ss_pred cChhHHHHHHHHHHHhCCCceEEEecccccHHHHH---HHhhcCcCCCCCcccccCCCCCCcEEEeccce---eeeEEEe
Q 005436 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (697)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (697)
.+.++...+...+....++.++++||||++.+... .++.... .+...... ..+...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI-----------------RILVKKEELTLEGIRQFY 258 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCE-----------------EECCCCCCCCTTSCCEEE
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCE-----------------EEEecCCccCCCCceEEE
Confidence 33334444444444456789999999999654332 2221111 11111111 1122222
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
......+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++|.++++.|
T Consensus 259 ~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 259 INVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp EECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHH
T ss_pred EEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 22222221 2334445555567789999999999999999999764 77899999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. .+|.||.++++.+
T Consensus 327 ~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 327 RSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp SCC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred HcCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 9999999999999999999999999999776 77889999999999999 7899999999775
Q ss_pred hhh
Q 005436 411 FVK 413 (697)
Q Consensus 411 ~~~ 413 (697)
...
T Consensus 389 ~~~ 391 (414)
T 3eiq_A 389 KRT 391 (414)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-38 Score=343.76 Aligned_cols=334 Identities=19% Similarity=0.219 Sum_probs=230.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHH--hcc---ccCCCeEEEE
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EAG---WADGGRVIAC 100 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~--~~~---~~~~~~~Ivv 100 (697)
+|..++++......+.+..-. ..+++|.+++..+.++++++++||||||||. ++|.+.. ... ...+.++|++
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~-~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYK-IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 455555665555555443222 3678899999999999999999999999994 4554322 111 1124578999
Q ss_pred ECccHHHHHHHHH--HHHHHhCCcceeEEeeEeecC-CcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 005436 101 TQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (697)
Q Consensus 101 ~p~r~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her 176 (697)
+|+|+|+.|.... .+....+.+++..+|...... ........+|+|+||+.|++.+..... +.++++||+|||| +
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~ 214 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-R 214 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-H
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-h
Confidence 9999999875433 233334556665555322111 111112689999999999998876654 8999999999999 4
Q ss_pred CcChhHHHHHHHHHHH--hCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecc---ceeeeEEEe
Q 005436 177 SISTDILLGLLKKIQR--CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNVQIHY 251 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~--~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~ 251 (697)
..+..+...+.+.+.. ..++.+++++|||++.+ +.++....... +..+.+.. ....+...+
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~-~~~~~~~~l~~-------------~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEE-IQRMAGEFLKN-------------YVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHH-HHHHHHTTCSS-------------CEEEEESSTTCCCTTEEEEE
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHH-HHHHHHHhccC-------------CEEEEeccccccccccceEE
Confidence 5555444443333332 25788999999999653 22222211100 00222211 112233333
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
......+... .+..+..... +++||||+++++++.+++.|.+. ++.+..+||++++++|.++++.|
T Consensus 281 ~~~~~~~k~~----~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F 346 (434)
T 2db3_A 281 YEVNKYAKRS----KLIEILSEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDF 346 (434)
T ss_dssp EECCGGGHHH----HHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHH
T ss_pred EEeCcHHHHH----HHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHH
Confidence 3222222222 2223333323 34999999999999999999875 78899999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
++|+.+|||||+++++|+|+|++++||++++ |.+..+|.||+||+||. ..|.|+.+++++
T Consensus 347 ~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 347 KNGSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp HTSSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred HcCCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 9999999999999999999999999999776 77899999999999999 889999999854
No 11
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=377.94 Aligned_cols=333 Identities=17% Similarity=0.149 Sum_probs=238.4
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce
Q 005436 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (697)
Q Consensus 45 ~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~ 124 (697)
....++++.+|.++++++.++++++++||||||||++....+... ...+++++|++|+++|+.|.. +.+...++ .++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~PtraLa~Q~~-~~l~~~~~-~Vg 255 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKY-RELLAEFG-DVG 255 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHH-HHHHHHTS-SEE
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHHHHHHHH-HHHHHHhC-Ccc
Confidence 445667999999999999999999999999999996665555543 245678999999999988754 44566665 555
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+|. ..... .++|+|+||++|.+.+..+.. +.++++||||||| +..+..+...+...+....+++++|+||
T Consensus 256 lltGd-----~~~~~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lS 328 (1108)
T 3l9o_A 256 LMTGD-----ITINP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLS 328 (1108)
T ss_dssp EECSS-----CBCCC-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred EEeCc-----cccCC-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEc
Confidence 54442 22333 689999999999999887766 8899999999999 5555555444444455567889999999
Q ss_pred ccc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc----------c-----hH--------
Q 005436 204 ATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----------S-----DY-------- 259 (697)
Q Consensus 204 AT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~-----~~-------- 259 (697)
||+ +...+.+|++..... ...++....+..++..++..... . .+
T Consensus 329 ATipn~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~ 396 (1108)
T 3l9o_A 329 ATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 396 (1108)
T ss_dssp CSCSSCHHHHHHHHHHTCS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH
Confidence 998 777888888653211 11134444444444433321100 0 00
Q ss_pred ----------------------------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC------
Q 005436 260 ----------------------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------ 305 (697)
Q Consensus 260 ----------------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~------ 305 (697)
....+..+.........+++||||+++++++.++..|.........
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 397 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 0222233344444456779999999999999999888543111000
Q ss_pred ---------------CC---------CCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecC
Q 005436 306 ---------------NS---------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (697)
Q Consensus 306 ---------------~~---------~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g 361 (697)
.. ....|.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecC
Confidence 00 011289999999999999999999999999999999999999999999999854
Q ss_pred cccceeecCCCCcccccccccCHHhHHHhhcccCCCC---CcEEEEccChh
Q 005436 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (697)
Q Consensus 362 ~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 409 (697)
. .||.. .+ .|+|..+|+||+|||||.+ +|.||.++++.
T Consensus 557 ~----~~d~~----~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 557 R----KWDGQ----QF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp E----EESSS----CE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred c----ccCcc----cc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 3 24433 22 2889999999999999995 89999999864
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-37 Score=336.45 Aligned_cols=335 Identities=16% Similarity=0.158 Sum_probs=235.8
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p~r 104 (697)
.+|.+++++......+.+..- -..+++|.++++.+.+++++++++|||+|||+.....+..... ..+.++++++|++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGF-EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTC-CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 467888888877666655322 2378999999999999999999999999999554444433322 1345789999999
Q ss_pred HHHHHHHHHHHHHH---hCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 105 RLAVQAVASRVAEE---MGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 105 ~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
.|+.|... .+... .+..+....|.....+. .......+|+|+||+.|++.+..... +.++++||+||||. ..+
T Consensus 100 ~L~~q~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~ 177 (400)
T 1s2m_A 100 ELALQTSQ-VVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK-MLS 177 (400)
T ss_dssp HHHHHHHH-HHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HSS
T ss_pred HHHHHHHH-HHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH-hhh
Confidence 99886543 33332 34555444442211110 11112679999999999988876544 88999999999993 444
Q ss_pred hhHHHHHHHHHHH-hCCCceEEEecccccHHHH---HHHhhcCcCCCCCcccccCCCCCCcEEEeccc--eeeeEEEecC
Q 005436 180 TDILLGLLKKIQR-CRSDLRLIISSATIEAKSM---SAFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFNVQIHYVE 253 (697)
Q Consensus 180 ~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~ 253 (697)
.++. ..+..+.. ..++.++++||||++.... ..++.... .+..... ...+..++..
T Consensus 178 ~~~~-~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 239 (400)
T 1s2m_A 178 RDFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-----------------EINLMEELTLKGITQYYAF 239 (400)
T ss_dssp HHHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-----------------EESCCSSCBCTTEEEEEEE
T ss_pred hchH-HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-----------------EEEeccccccCCceeEEEE
Confidence 4433 33444443 4467899999999965422 22222111 1111010 1112222222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
....... ..+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..+++.|++
T Consensus 240 ~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 240 VEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp CCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred echhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 2222222 22233333446788999999999999999999876 7789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.++++++..
T Consensus 307 g~~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 307 GKVRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 99999999999999999999999999776 78899999999999999 799999999987654
Q ss_pred h
Q 005436 413 K 413 (697)
Q Consensus 413 ~ 413 (697)
.
T Consensus 369 ~ 369 (400)
T 1s2m_A 369 N 369 (400)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.3e-38 Score=339.41 Aligned_cols=340 Identities=15% Similarity=0.124 Sum_probs=231.6
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEEC
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQ 102 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p 102 (697)
.+|.+++++......+.+.. --..+++|.++++.+.++ ++++++||||||||.+....+..... ..+.++++++|
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g-~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMG-FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTT-CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 35777777777766666533 335678888889988876 89999999999999654444443322 23447899999
Q ss_pred ccHHHHHHHHHHHHHHh----CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcC
Q 005436 103 PRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (697)
Q Consensus 103 ~r~l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her 176 (697)
+++|+.|.. +.+.+.. +..++...|... ....... ..+|+|+||+.|.+.+..... +.++++||+||||..
T Consensus 104 ~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~ 180 (412)
T 3fht_A 104 TYELALQTG-KVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 180 (412)
T ss_dssp SHHHHHHHH-HHHHHHTTTSTTCCEEEECTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHH
T ss_pred CHHHHHHHH-HHHHHHHhhcccceEEEeecCcc-hhhhhcC-CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHH
Confidence 999988743 3333332 233332222111 1112222 578999999999998866433 688999999999943
Q ss_pred CcChhHHHHHHHHHHHhCCCceEEEecccccHHH--HHHHhhcCcCCCCCcccccCCCCCCcEEEeccc---eeeeEEEe
Q 005436 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKS--MSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHY 251 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 251 (697)
.....+............++.+++++|||++... +...+...+. .+.+... ...+...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 181 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN----------------VIKLKREEETLDTIKQYY 244 (412)
T ss_dssp HSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE----------------EECCCGGGSSCTTEEEEE
T ss_pred hhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe----------------EEeeccccccccCceEEE
Confidence 3223333333333334567889999999996542 2222221110 1211111 11222333
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCC
Q 005436 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (697)
......+ .....+..+......+++||||+++++++.+++.|.+. +..+..+||+|+.++|.++++.|
T Consensus 245 ~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 245 VLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp EECSSHH---HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHH
T ss_pred EEcCChH---HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 3222222 22333344444446678999999999999999999875 67899999999999999999999
Q ss_pred CCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 332 ~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
++|+.+|||||+++++|+|+|++++||+++....+. .+.|..+|.||+|||||. .+|.|+.++++..
T Consensus 313 ~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~------------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 313 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp HTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS------------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred HCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC------------CCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999999999999977622111 026889999999999998 7799999998654
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.4e-37 Score=333.37 Aligned_cols=335 Identities=17% Similarity=0.174 Sum_probs=235.2
Q ss_pred cccccCCCCCCccchhhHHHHhcCCC-cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc--cccCCCeEEEEE
Q 005436 25 LSSSLSSASSIGYGYASIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACT 101 (697)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~r~~lP-i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~--~~~~~~~~Ivv~ 101 (697)
.++.|.++++++.....+.+. .+. .+++|.++++.+.+++++++.+|||+|||......+... ....+.++|+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 83 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 83 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEEC
Confidence 345677888887776666553 343 889999999999999999999999999995544333332 122345789999
Q ss_pred CccHHHHHHHHHHHHHHh----CCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 005436 102 QPRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (697)
Q Consensus 102 p~r~l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H 174 (697)
|++.|+.|.. +.+.+.. +.+++...|.....+. ......++|+|+||+.|...+..... +.++++||+||||
T Consensus 84 P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQIS-KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHH-HHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHH-HHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 9999988753 3333332 4555544442111000 00111468999999999998877654 8899999999999
Q ss_pred cCCcChhHHHHHHHHHHHhCCCceEEEecccccHH--H-HHHHhhcCcCCCCCcccccCCCCCCcEEEeccc----eeee
Q 005436 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--S-MSAFFHARKGRRGLEGVELVPRLEPAILSVEGR----GFNV 247 (697)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v 247 (697)
......++...+.+.+....++.+++++|||++.. . +..++.... .+..... ...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 225 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-----------------EIFVDDETKLTLHGL 225 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-----------------EEECCCCCCCCCTTC
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-----------------EEEecCccccCcccc
Confidence 54333445444444444455688999999999442 2 233333211 1111111 1122
Q ss_pred EEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
...+......+... .+..+......+++||||+++++++.+++.|.+. +..+..+||+++.++|.++
T Consensus 226 ~~~~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 226 QQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp EEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHH
T ss_pred eEEEEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHH
Confidence 33333323233222 2233333346789999999999999999999775 6789999999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEcc
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~ 406 (697)
++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. .+|.|+.++
T Consensus 293 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 293 YQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp HHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred HHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEE
Confidence 99999999999999999999999999999999776 77999999999999999 789999999
Q ss_pred ChhH
Q 005436 407 TEEY 410 (697)
Q Consensus 407 ~~~~ 410 (697)
++.+
T Consensus 355 ~~~~ 358 (391)
T 1xti_A 355 SDEN 358 (391)
T ss_dssp CSHH
T ss_pred cccc
Confidence 8654
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.9e-38 Score=342.97 Aligned_cols=338 Identities=15% Similarity=0.170 Sum_probs=233.3
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p~r~ 105 (697)
+|.+++++......+.+.. --..+++|.++++.+.+++++++++|||||||.+....+..... ..+.++++++|+++
T Consensus 38 ~f~~~~l~~~l~~~l~~~g-~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYG-FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHT-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CHhhcCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 5666667776666665432 22378899999999999999999999999999555544443322 24567899999999
Q ss_pred HHHHHHHH--HHHHHhCCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 005436 106 LAVQAVAS--RVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (697)
Q Consensus 106 l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (697)
|+.|.... .+....+..++...|.....+. .... ..+|+|+||+.|.+.+..... +.++++||+||||. ..+.
T Consensus 117 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~ 194 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNK 194 (410)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTST
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhh
Confidence 99875433 2222334444444442111110 0112 468999999999998877654 88899999999994 3344
Q ss_pred hHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccc---eeeeEEEecCCCcc
Q 005436 181 DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEEPVS 257 (697)
Q Consensus 181 d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~ 257 (697)
.+...+.+.+....++.+++++|||++.+. .++....... +..+.+... ...+...+......
T Consensus 195 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (410)
T 2j0s_A 195 GFKEQIYDVYRYLPPATQVVLISATLPHEI-LEMTNKFMTD-------------PIRILVKRDELTLEGIKQFFVAVERE 260 (410)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEEESCCCHHH-HTTGGGTCSS-------------CEEECCCGGGCSCTTEEEEEEEESST
T ss_pred hhHHHHHHHHHhCccCceEEEEEcCCCHHH-HHHHHHHcCC-------------CEEEEecCccccCCCceEEEEEeCcH
Confidence 444433333334557889999999996542 2222211100 001111111 11222233222222
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
+.. ...+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++|..+++.|++|+.+
T Consensus 261 ~~k---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (410)
T 2j0s_A 261 EWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASR 328 (410)
T ss_dssp THH---HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred HhH---HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 221 222233333335678999999999999999999775 67899999999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.+..
T Consensus 329 vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 329 VLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred EEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 9999999999999999999999776 77899999999999999 899999999987643
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.4e-38 Score=351.57 Aligned_cols=332 Identities=14% Similarity=0.134 Sum_probs=229.5
Q ss_pred CCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHH
Q 005436 30 SSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLA 107 (697)
Q Consensus 30 ~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~ 107 (697)
.+++++......+.+.-.--..+++|.++++++.+++++++.+|||+||| +++|.+. .++.+||++|+++|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLM 97 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHH
Confidence 34566665544444422222467889999999999999999999999999 4666543 246789999999999
Q ss_pred HHHHHHHHHHHhCCcceeEEeeEeecCC------c-CCCCCceEEEechHHHH------HHHhcCCCCCCCcEEEEeCCC
Q 005436 108 VQAVASRVAEEMGVKVGEEVGYTIRFED------F-TNKDLTAIKFLTDGVLL------REMMDDPLLTKYSVIMVDEAH 174 (697)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~-~~~~~~~I~v~T~~~Ll------~~l~~~~~l~~~~~iIiDE~H 174 (697)
.|++.. +. ..|..+....|.....+. . ......+|+|+||+.|. +.+.....+.++++|||||||
T Consensus 98 ~q~~~~-l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH 175 (591)
T 2v1x_A 98 EDQLMV-LK-QLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVH 175 (591)
T ss_dssp HHHHHH-HH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGG
T ss_pred HHHHHH-HH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcc
Confidence 886655 22 347666554443221111 0 01226899999999874 222222236789999999999
Q ss_pred cCCcC-hhHHH--HHHHHHHHhCCCceEEEecccccHHH---HHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeE
Q 005436 175 ERSIS-TDILL--GLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ 248 (697)
Q Consensus 175 er~~~-~d~l~--~~l~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 248 (697)
+.+-. .++.. ..+..+....++.++|++|||++... +.++++.... .....+.. ...
T Consensus 176 ~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~----------------~~~~~~~~-r~n 238 (591)
T 2v1x_A 176 CCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKC----------------FTFTASFN-RPN 238 (591)
T ss_dssp GGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSC----------------EEEECCCC-CTT
T ss_pred cccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCc----------------EEEecCCC-Ccc
Confidence 64421 11211 11234445667899999999997643 3444443210 11111111 111
Q ss_pred EEecCCCcchHHHHHHHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhc
Q 005436 249 IHYVEEPVSDYVQAAVSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (697)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (697)
+.|...............+..... ...++++||||+++++++.+++.|... ++.+..+||+|++++|.++
T Consensus 239 l~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 239 LYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp EEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHH
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHH
Confidence 111111111111223334444433 235688999999999999999999875 7889999999999999999
Q ss_pred cCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEcc
Q 005436 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (697)
Q Consensus 328 ~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~ 406 (697)
++.|.+|+.+|||||+++++|||+|+|++||++++ |.|..+|.||+|||||. .+|.|+.+|
T Consensus 310 ~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 310 HRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp HHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 99999999999999999999999999999999877 77999999999999999 799999999
Q ss_pred ChhHhhh
Q 005436 407 TEEYFVK 413 (697)
Q Consensus 407 ~~~~~~~ 413 (697)
++.+...
T Consensus 372 ~~~D~~~ 378 (591)
T 2v1x_A 372 GFGDIFR 378 (591)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 9887654
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-37 Score=330.23 Aligned_cols=332 Identities=20% Similarity=0.269 Sum_probs=237.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~-~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~ 105 (697)
+|.+++++......+.+.. --..+++|.+++..+.++ +++++.+|||||||++....+..... ..+.++++++|++.
T Consensus 7 ~f~~~~l~~~~~~~l~~~g-~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKG-FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHT-CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 4677777777766665543 335678888888888777 79999999999999665555544322 23557899999999
Q ss_pred HHHHHHHHHHHHHhC---CcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 005436 106 LAVQAVASRVAEEMG---VKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (697)
Q Consensus 106 l~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (697)
|+.|.. +.+....+ ..+....|.....+. .... ..+|+|+||+.+.+.+..+.. +.++++||+||||.. .+.
T Consensus 86 L~~q~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~ 162 (367)
T 1hv8_A 86 LAIQVA-DEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNM 162 (367)
T ss_dssp HHHHHH-HHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTT
T ss_pred HHHHHH-HHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhh
Confidence 987643 44454443 333333332111110 1112 578999999999998877655 889999999999943 333
Q ss_pred hHHHHHHHHHHHhCCCceEEEecccccHHHH---HHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcc
Q 005436 181 DILLGLLKKIQRCRSDLRLIISSATIEAKSM---SAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS 257 (697)
Q Consensus 181 d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (697)
.+...+.+.+....++.++++||||++.... ..+++... .+. ......+...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-----------------FIK-AKINANIEQSYVEVNEN 224 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-----------------EEE-CCSSSSSEEEEEECCGG
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-----------------EEE-ecCCCCceEEEEEeChH
Confidence 3444444444445678999999999965432 34443221 121 11122334444433333
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
+..... ..... ..++++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+
T Consensus 225 ~~~~~l----~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 225 ERFEAL----CRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp GHHHHH----HHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHH----HHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 333322 22222 46778999999999999999999775 67899999999999999999999999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. .+|.|+.++++.++..
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999999999777 78999999999999999 6999999999876654
No 18
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.7e-38 Score=349.83 Aligned_cols=305 Identities=21% Similarity=0.275 Sum_probs=223.4
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 41 ~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
+....|..+|++.+|++++.++.++++++++||||||||+++++.+++. +.++++++|+|+|+.| +++++++.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Q-ia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLG-FGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHH-HHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHH-HHHHHHHHhC
Confidence 3566778999999999999999999999999999999999888877763 4578999999988775 4667888999
Q ss_pred CcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEE
Q 005436 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (697)
Q Consensus 121 ~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii 200 (697)
..++..+|+.. ... ..+|+|+||+.|++. ....+.++++|||||||+++...+..+..+...........++
T Consensus 283 ~~vg~~vG~~~-----~~~-~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 283 IDPNIRTGVRT-----ITT-GAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp CCCEEECSSCE-----ECC-CCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCeeEEECcEe-----ccC-CCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 88888887643 223 689999999998421 1223778999999999977655444333333333333344478
Q ss_pred EecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEE
Q 005436 201 ISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDIL 280 (697)
Q Consensus 201 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 280 (697)
+||||++.. +.... +....+... +.-...+...... .....++++|
T Consensus 355 l~SAT~~~~-----i~~~~---------------p~i~~v~~~-~~~~i~~~~~~~~-------------l~~~~~~~vL 400 (666)
T 3o8b_A 355 LATATPPGS-----VTVPH---------------PNIEEVALS-NTGEIPFYGKAIP-------------IEAIRGGRHL 400 (666)
T ss_dssp EEESSCTTC-----CCCCC---------------TTEEEEECB-SCSSEEETTEEEC-------------GGGSSSSEEE
T ss_pred EECCCCCcc-----cccCC---------------cceEEEeec-ccchhHHHHhhhh-------------hhhccCCcEE
Confidence 889999652 11000 001111100 0000111110000 1123578899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEec
Q 005436 281 VFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDS 360 (697)
Q Consensus 281 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~ 360 (697)
|||+++++++.+++.|++. ++.+..+||+|++++ ++++..+|||||+++++|||+| |++|||+
T Consensus 401 VFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 401 IFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp EECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEec
Confidence 9999999999999999764 788999999999875 3456679999999999999998 9999999
Q ss_pred Cccccee----ecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHh
Q 005436 361 GFSKQRF----YNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (697)
Q Consensus 361 g~~k~~~----yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 411 (697)
|+.+..+ |||..++... ..|.|.++|+||+||+||.++|. |.||++.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred Ccccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 9888665 5566666543 56999999999999999998999 999987654
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=339.53 Aligned_cols=335 Identities=19% Similarity=0.201 Sum_probs=229.7
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHh--cc-------------
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKE--AG------------- 90 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~--~~------------- 90 (697)
+|.+++++......+... .--..+++|.++++.+.++++++++||||||||. ++|.+... ..
T Consensus 16 ~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELT-RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SGGGSCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 577777777766666543 3335688899999999999999999999999994 44433221 10
Q ss_pred ---ccCCCeEEEEECccHHHHHHHHH--HHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CC
Q 005436 91 ---WADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LT 163 (697)
Q Consensus 91 ---~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~ 163 (697)
...+.++|+++|+++|+.|.... .+....+..++...|.....+. ......++|+|+||+.|.+.+..+.. +.
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChh
Confidence 01124689999999999875433 2222334555554442211110 01112578999999999998877665 88
Q ss_pred CCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----CCCceEEEecccccHH--HHH-HHhhcCcCCCCCcccccCCCCCC
Q 005436 164 KYSVIMVDEAHERSISTDILLGLLKKIQRC-----RSDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEP 235 (697)
Q Consensus 164 ~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-----~~~~~ii~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (697)
++++||+||||. ..+..+. ..+..+... ....+++++|||++.. .+. .++....
T Consensus 175 ~~~~iViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~---------------- 236 (417)
T 2i4i_A 175 FCKYLVLDEADR-MLDMGFE-PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI---------------- 236 (417)
T ss_dssp TCCEEEESSHHH-HHHTTCH-HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE----------------
T ss_pred hCcEEEEEChhH-hhccCcH-HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE----------------
Confidence 999999999994 2222222 233333331 1267899999999543 232 3332211
Q ss_pred cEEEecc---ceeeeEEEecCCCcchHHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeE
Q 005436 236 AILSVEG---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLI 311 (697)
Q Consensus 236 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 311 (697)
.+.+.. ....+...+......+... .+..+... ..++++||||+++++++.+++.|.+. ++.
T Consensus 237 -~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~ 302 (417)
T 2i4i_A 237 -FLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYA 302 (417)
T ss_dssp -EEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCC
T ss_pred -EEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCC
Confidence 111111 1112222222222222222 22233322 35678999999999999999999775 778
Q ss_pred EEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhh
Q 005436 312 ILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (697)
Q Consensus 312 v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~ 391 (697)
+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~ 364 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRI 364 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHH
T ss_pred eeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999776 78899999999
Q ss_pred cccCCC-CCcEEEEccChhHhhh
Q 005436 392 GRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 392 GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
||+||. .+|.|+.++++.+...
T Consensus 365 GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 365 GRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp TTBCC--CCEEEEEEECGGGGGG
T ss_pred CccccCCCCceEEEEEccccHHH
Confidence 999999 7899999999876544
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.91 Aligned_cols=339 Identities=15% Similarity=0.126 Sum_probs=119.4
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECc
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~ 103 (697)
+|..++++......+.+.. --..+.+|.+++..+.++ ++++++||||||||.+....+...... .+.++|+++|+
T Consensus 93 ~f~~~~l~~~l~~~l~~~g-~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMG-FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTT-CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CHHHcCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 4555666666665565533 334677888899999876 999999999999996554444443222 23378999999
Q ss_pred cHHHHHHHHHHHHHHh----CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCC
Q 005436 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERS 177 (697)
Q Consensus 104 r~l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~ 177 (697)
++|+.|... .+.... +..++..+|. ......... ..+|+|+||+.|++.+..... +.++++|||||+|...
T Consensus 172 ~~La~Q~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 172 YELALQTGK-VIEQMGKFYPELKLAYAVRG-NKLERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp HHHHHHHHH-HHHHHHTTSTTCCEEEESTT-CCCCTTCCC-CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHH
T ss_pred HHHHHHHHH-HHHHHHhhCCCceEEEEeCC-ccccccccC-CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHh
Confidence 999887532 233322 2222222221 111122222 578999999999998866443 6899999999999433
Q ss_pred cChhHHHHHHHHHHHhCCCceEEEecccccHHH--HHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---eeEEEec
Q 005436 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAKS--MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYV 252 (697)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~ 252 (697)
....+............++.++|++|||++... +...+...+ ..+.+..... .+...+.
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP----------------NVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp TSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE----------------EEEEEC--------------
T ss_pred hcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC----------------eEEeccccccCcCCceEEEE
Confidence 223344333333334567899999999996542 332222111 0222222111 1111222
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCC
Q 005436 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (697)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (697)
..... ......+..+......+++||||+++++++.+++.|... +..+..+||+|++.+|..+++.|+
T Consensus 313 ~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 313 LCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHH
Confidence 11111 112223333344445678999999999999999999765 778999999999999999999999
Q ss_pred CCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 333 ~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
+|+.+|||||+++++|+|+|++++||++++..... .+.|..+|.||+|||||. .+|.|+.++++..
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 99999999999999999999999999966522110 025678899999999998 7899999998654
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.7e-38 Score=341.14 Aligned_cols=337 Identities=17% Similarity=0.222 Sum_probs=125.1
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc--ccCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~--~~~~~~~Ivv~p~r~ 105 (697)
.|.+++++......+.+. .--..+++|.+++..+.+++++++++|||+|||.+....+.... ...+.++++++|+++
T Consensus 22 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp SSGGGCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 477778888776666654 23367899999999999999999999999999955433333321 223557899999999
Q ss_pred HHHHHHHH--HHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhH
Q 005436 106 LAVQAVAS--RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDI 182 (697)
Q Consensus 106 l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ 182 (697)
|+.|.... .+....+..++..+|.....+........+|+|+||+.|.+.+..... +.++++||+||||.. ...++
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~-~~~~~ 179 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGF 179 (394)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTC
T ss_pred HHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh-hCCCc
Confidence 98875433 222234555555555322111111111478999999999998876654 788999999999942 22223
Q ss_pred HHHHHHHHHHhCCCceEEEecccccHHH---HHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---eeEEEecCCCc
Q 005436 183 LLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPV 256 (697)
Q Consensus 183 l~~~l~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~ 256 (697)
...+...+....++.++++||||++... ...++.... .+....... .+...+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 1fuu_A 180 KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-----------------RILVKKDELTLEGIKQFYVNVEE 242 (394)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-----------------EEEECC-----------------
T ss_pred HHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-----------------EEEecCccccCCCceEEEEEcCc
Confidence 3333333444567889999999996532 223333211 122211111 11122221111
Q ss_pred chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc
Q 005436 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (697)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (697)
.++ ....+..+......+++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.
T Consensus 243 ~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 310 (394)
T 1fuu_A 243 EEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSS 310 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 111 1122223333345678999999999999999999765 6789999999999999999999999999
Q ss_pred EEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhhh
Q 005436 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 337 kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~~ 413 (697)
+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++++...
T Consensus 311 ~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 311 RILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 99999999999999999999999766 77888999999999999 7899999999876544
No 22
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-37 Score=367.83 Aligned_cols=329 Identities=17% Similarity=0.172 Sum_probs=227.9
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh-CCcceeE
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEE 126 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~-~~~~~~~ 126 (697)
.++++.+|.+++.++.++++++++||||||||+.....+.. ....++++||++|+++|+.|.+.. +.+.+ +..++..
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~-~~~~g~~vlvl~PtraLa~Q~~~~-l~~~~~~~~v~~l 114 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAM-AHRNMTKTIYTSPIKALSNQKFRD-FKETFDDVNIGLI 114 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHH-HHHTTCEEEEEESCGGGHHHHHHH-HHTTC--CCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHH-HHHHcCCCeEEEE
Confidence 34589999999999999999999999999999432222221 233567899999999999876544 44443 5666666
Q ss_pred EeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
+|... ... .++|+|+||+.|.+.+..... +.++++||||||| +..+.++...+...+....++.++|++|||
T Consensus 115 ~G~~~-----~~~-~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 115 TGDVQ-----INP-DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp CSSCE-----ECT-TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred eCCCc-----cCC-CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 66321 223 689999999999998876654 8899999999999 443433333333334456678999999999
Q ss_pred c-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC--------cc-----hH------------
Q 005436 206 I-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------VS-----DY------------ 259 (697)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~-----~~------------ 259 (697)
+ +...|.+|++..... ...++..+.+..|+..++.... .. .+
T Consensus 188 ~~n~~ef~~~l~~~~~~------------~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQK------------NIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp CTTHHHHHHHHHHHHTC------------CEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred CCChHHHHHHHhcccCC------------ceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 8 888999999753211 0113344444444443321100 00 00
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHhcCC
Q 005436 260 ----------------------------------------------------------------VQAAVSTVLLIHDKEP 275 (697)
Q Consensus 260 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 275 (697)
.......+........
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~ 335 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRE 335 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCC
Confidence 0011223444444556
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhh------------------hccC------------CCCCeEEEEecCCCCHHHHh
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEAR------------------TSKK------------NSSGLIILPLYSGLSRAEQE 325 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~------------------~~~~------------~~~~~~v~~lh~~l~~~~r~ 325 (697)
.+++||||+++++++.++..|....- .+.. ......+.++||+|++.+|.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 68999999999999999988843100 0000 00022488999999999999
Q ss_pred hccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEE
Q 005436 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKC 402 (697)
Q Consensus 326 ~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~ 402 (697)
.+++.|++|.++|||||+++++|||+|++.+|+ .+..+ ||... ..|+|..+|.||+|||||. ..|.|
T Consensus 416 ~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp HHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred HHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEE
Confidence 999999999999999999999999999955555 44433 55432 2288999999999999997 48999
Q ss_pred EEccC
Q 005436 403 YRLYT 407 (697)
Q Consensus 403 ~~l~~ 407 (697)
|.++.
T Consensus 486 i~l~~ 490 (997)
T 4a4z_A 486 IVMAY 490 (997)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99994
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.3e-37 Score=340.24 Aligned_cols=328 Identities=16% Similarity=0.162 Sum_probs=228.2
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHH
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
|.+++++......+.+.-.--..+++|.++++++.+++++++++|||+||| +++|.+.. .+.+|+++|+++|
T Consensus 4 fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL 77 (523)
T 1oyw_A 4 AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISL 77 (523)
T ss_dssp CCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHH
T ss_pred hhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHH
Confidence 445555554444444422222457899999999999999999999999999 46665532 3578999999999
Q ss_pred HHHHHHHHHHHHhCCcceeEEeeEeecC------CcCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcC
Q 005436 107 AVQAVASRVAEEMGVKVGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~ 179 (697)
+.|++.. ....|..+....|.....+ ..... ..+|+|+||+.|......+ ....++++|||||||+.+..
T Consensus 78 ~~q~~~~--l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~ 154 (523)
T 1oyw_A 78 MKDQVDQ--LQANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQW 154 (523)
T ss_dssp HHHHHHH--HHHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTT
T ss_pred HHHHHHH--HHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcC
Confidence 9887655 2345666554444221111 01112 5899999999985321111 11368899999999965422
Q ss_pred ---hhHHHHHHHHHHHhCCCceEEEecccccHHH---HHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecC
Q 005436 180 ---TDILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE 253 (697)
Q Consensus 180 ---~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 253 (697)
.......+..+....++.+++++|||++... +.++++-... .+.+.+...+ .+.|..
T Consensus 155 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~----------------~~~~~~~~r~-~l~~~v 217 (523)
T 1oyw_A 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP----------------LIQISSFDRP-NIRYML 217 (523)
T ss_dssp SSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC----------------EEEECCCCCT-TEEEEE
T ss_pred CCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC----------------eEEeCCCCCC-ceEEEE
Confidence 1222233444556667899999999996654 3444432110 2222221111 111111
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
....+.... +........++++||||+++++++.+++.|.+. ++.+..+||+|++++|..+++.|.+
T Consensus 218 ~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~ 284 (523)
T 1oyw_A 218 MEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQR 284 (523)
T ss_dssp EECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHc
Confidence 111222222 333333346678999999999999999999875 7789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+.+|||||+++++|||+|+|++||+++. |.|.++|.||+|||||. .+|.|+.+|++++..
T Consensus 285 g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 285 DDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp TSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred CCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 99999999999999999999999999877 78999999999999999 699999999988765
Q ss_pred h
Q 005436 413 K 413 (697)
Q Consensus 413 ~ 413 (697)
.
T Consensus 347 ~ 347 (523)
T 1oyw_A 347 W 347 (523)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=354.57 Aligned_cols=332 Identities=17% Similarity=0.157 Sum_probs=228.5
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
.....++.+|.+++.++.++++++++||||||||++....+... +..+.++||++|+++|+.|... .+...++ .++.
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~-~l~~~~~-~vgl 158 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYR-ELLAEFG-DVGL 158 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHH-HHHHHHS-CEEE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHH-HHHHHhC-CEEE
Confidence 34456999999999999999999999999999996544333322 2356789999999999987654 4555555 5665
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
.+|.. .... ..+|+|+||++|.+.+..+. .+.++++|||||||. ..+......+-..+....++.++|+|||
T Consensus 159 ltGd~-----~~~~-~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~~l~~~~~il~LSA 231 (1010)
T 2xgj_A 159 MTGDI-----TINP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVFLSA 231 (1010)
T ss_dssp ECSSC-----EECT-TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EeCCC-----ccCC-CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHHhcCCCCeEEEEcC
Confidence 55522 1223 67899999999998876654 488999999999994 3222221112222333567899999999
Q ss_pred cc-cHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCC----------cc-----hHH--------
Q 005436 205 TI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP----------VS-----DYV-------- 260 (697)
Q Consensus 205 T~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~-----~~~-------- 260 (697)
|+ +...+++|++..... ...++..+.+..+++.++.... .. .+.
T Consensus 232 Ti~n~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 232 TIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp CCTTHHHHHHHHHHHHTS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 99 778899998642210 0113333444444433322100 00 000
Q ss_pred ----------------------------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhh-----------
Q 005436 261 ----------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR----------- 301 (697)
Q Consensus 261 ----------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~----------- 301 (697)
...+..+.........+++||||+++..++.+++.|....-
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11112233333333556899999999999999988854100
Q ss_pred -------hccCCC------------CCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCc
Q 005436 302 -------TSKKNS------------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGF 362 (697)
Q Consensus 302 -------~~~~~~------------~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~ 362 (697)
.+.... ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~-- 457 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS-- 457 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC--
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC--
Confidence 000000 01238899999999999999999999999999999999999999999999973
Q ss_pred ccceeecCCCCcccccccccCHHhHHHhhcccCCCC---CcEEEEccChh
Q 005436 363 SKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (697)
Q Consensus 363 ~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 409 (697)
...||... ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 458 --~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 --VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp --SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred --CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 23355432 23889999999999999994 59999999854
No 25
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1e-36 Score=333.62 Aligned_cols=294 Identities=19% Similarity=0.210 Sum_probs=202.7
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCC-cC
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-FT 137 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ 137 (697)
.+++.++++++++||||||||++....++......+.++||++|+|+|+.|.... +. |.. +++...... ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~-l~---g~~----v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEA-LR---GLP----VRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHH-TT---TSC----EEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHH-hc---Cce----EeEEecccccCC
Confidence 5567889999999999999996533333322233456799999999998875433 22 322 222222111 11
Q ss_pred CCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhc
Q 005436 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (697)
Q Consensus 138 ~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~ 217 (697)
.. ...+.++|.+.+.+.+..++.+.++++|||||||+++...++..+++..... .++.++|+||||++.+. ..+...
T Consensus 87 t~-~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~ 163 (459)
T 2z83_A 87 QG-NEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDS 163 (459)
T ss_dssp -C-CCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred CC-CcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccC
Confidence 23 5678899999999998888889999999999999876666666666665443 46899999999996431 111000
Q ss_pred CcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 005436 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (697)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (697)
..++..+.. ..+. ....... ..+ . ..++++||||+++++++.+++.|.
T Consensus 164 ----------------~~pi~~~~~-~~~~------~~~~~~~----~~l----~-~~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 164 ----------------NAPIHDLQD-EIPD------RAWSSGY----EWI----T-EYAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp ----------------SSCEEEEEC-CCCS------SCCSSCC----HHH----H-HCCSCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------CCCeEEecc-cCCc------chhHHHH----HHH----H-hcCCCEEEEeCChHHHHHHHHHHH
Confidence 111222211 1110 0000000 111 1 136789999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeec--CCCCcc
Q 005436 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYN--PISDIE 375 (697)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd--~~~~~~ 375 (697)
.. ++.+..+||. +|.++++.|++|+++|||||+++++|+|+|+ ++|||+|..+.+.++ ....+.
T Consensus 212 ~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~ 277 (459)
T 2z83_A 212 RA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVI 277 (459)
T ss_dssp HT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEE
T ss_pred hc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccc
Confidence 75 7788999995 7889999999999999999999999999999 999999988777765 222322
Q ss_pred cccccccCHHhHHHhhcccCCCC--CcEEEEccChh
Q 005436 376 NLVVAPISKASARQRAGRAGRVR--PGKCYRLYTEE 409 (697)
Q Consensus 376 ~l~~~~~S~~~~~Qr~GRaGR~~--~G~~~~l~~~~ 409 (697)
.+...|.|.++|.||+|||||.+ +|.||.++++.
T Consensus 278 ~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 278 LGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 22347999999999999999993 89999999875
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-36 Score=315.70 Aligned_cols=299 Identities=18% Similarity=0.225 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH---HhCCccee
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVKVGE 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~---~~~~~~~~ 125 (697)
-.++++|.++++.+.+++++++++|||+|||......+... +.++++++|+++|+.|.... +.+ ..+..++.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~-~~~~~~~~~~~~~~ 89 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASH-IRDIGRYMDTKVAE 89 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHH-HHHHTTTSCCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHH-HHHHhhhcCCcEEE
Confidence 35789999999999999999999999999996655555443 45789999999998875433 333 33455554
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
..|.....+........+|+|+||+.|.+.+..... +.++++||+||||... +..+...+...+.......+++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (337)
T 2z0m_A 90 VYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF-EMGFIDDIKIILAQTSNRKITGLFSA 168 (337)
T ss_dssp ECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-HTTCHHHHHHHHHHCTTCSEEEEEES
T ss_pred EECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-ccccHHHHHHHHhhCCcccEEEEEeC
Confidence 444221111111111578999999999998876554 7889999999999422 22222222222333456778899999
Q ss_pred cccHH---HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEE
Q 005436 205 TIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (697)
Q Consensus 205 T~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 281 (697)
|++.. .+..++.... .+........+...+........ .. ........++++||
T Consensus 169 T~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~lv 225 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYE-----------------EIEACIGLANVEHKFVHVKDDWR--SK----VQALRENKDKGVIV 225 (337)
T ss_dssp CCCHHHHHHHHHHSCSCE-----------------EEECSGGGGGEEEEEEECSSSSH--HH----HHHHHTCCCSSEEE
T ss_pred cCCHHHHHHHHHhcCCce-----------------eeecccccCCceEEEEEeChHHH--HH----HHHHHhCCCCcEEE
Confidence 99654 3344443221 22222222223333322221111 11 12333456788999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecC
Q 005436 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (697)
Q Consensus 282 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g 361 (697)
||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 226 f~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp ECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred EEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 9999999998887663 367899999999999999999999999999999999999999999999977
Q ss_pred cccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 362 ~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
. |.|..+|.||+|||||. .+|.|+.++.
T Consensus 293 ~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 293 A------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp C------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred C------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 6 77899999999999999 7899999988
No 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-36 Score=332.88 Aligned_cols=292 Identities=17% Similarity=0.228 Sum_probs=205.6
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCc
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF 136 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~-lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 136 (697)
+...+.++++++++||||||||++ ++.++.. ....+.++++++|+|+|+.|.... + .| ..+++.......
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~-~~~~~~~~lvl~Ptr~La~Q~~~~-l---~g----~~v~~~~~~~~~ 82 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVRE-ALLRRLRTLILAPTRVVAAEMEEA-L---RG----LPIRYQTPAVKS 82 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHHHHH-T---TT----SCEEECCTTCSC
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHH-HHhcCCcEEEECCCHHHHHHHHHH-h---cC----ceeeeeeccccc
Confidence 334455667779999999999953 3333322 223456899999999998775433 2 12 233444433322
Q ss_pred CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhh
Q 005436 137 TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFH 216 (697)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~ 216 (697)
.......|.++|++.+.+.+.....+.++++|||||||+++...+....++.. ....++.++++||||++.+....++.
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~-~~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIST-RVEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHH-HHHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHH-hhcCCCceEEEEccCCCccchhhhcC
Confidence 22226789999999999999888889999999999999764444444444432 22456899999999996532222111
Q ss_pred cCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHH
Q 005436 217 ARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLL 296 (697)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L 296 (697)
.. .++.+. +..+... |.. ..++ + . ...+++||||+++++++.+++.|
T Consensus 162 ~~-----------------~~~~~~-~~~p~~~-~~~--~~~~-------l----~-~~~~~~lVF~~s~~~a~~l~~~L 208 (451)
T 2jlq_A 162 NS-----------------PIEDIE-REIPERS-WNT--GFDW-------I----T-DYQGKTVWFVPSIKAGNDIANCL 208 (451)
T ss_dssp SS-----------------CEEEEE-CCCCSSC-CSS--SCHH-------H----H-HCCSCEEEECSSHHHHHHHHHHH
T ss_pred CC-----------------ceEecC-ccCCchh-hHH--HHHH-------H----H-hCCCCEEEEcCCHHHHHHHHHHH
Confidence 11 133222 2222110 100 0011 1 1 13568999999999999999999
Q ss_pred HHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccc
Q 005436 297 TEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIEN 376 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~ 376 (697)
.+. ++.+..+||.+ +.++++.|++|+.+|||||+++++|+|+|+ ++|||+|+.+.+.|| ..+...
T Consensus 209 ~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~ 273 (451)
T 2jlq_A 209 RKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPER 273 (451)
T ss_dssp HTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCE
T ss_pred HHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccce
Confidence 764 67788999975 457899999999999999999999999999 999999999999998 556666
Q ss_pred ccc---cccCHHhHHHhhcccCCCC--CcEEEEccC
Q 005436 377 LVV---APISKASARQRAGRAGRVR--PGKCYRLYT 407 (697)
Q Consensus 377 l~~---~~~S~~~~~Qr~GRaGR~~--~G~~~~l~~ 407 (697)
+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 655 7999999999999999994 899998875
No 28
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-36 Score=338.62 Aligned_cols=317 Identities=17% Similarity=0.215 Sum_probs=196.5
Q ss_pred cHHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECccHHHHHHHHHHHHHHhC-Cccee
Q 005436 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGE 125 (697)
Q Consensus 51 i~~~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r~l~~~~~~~~~~~~~~-~~~~~ 125 (697)
.+.+|.++++++.++ ++++++||||||||.+....+...... .+.++++++|+++|+.|.. +++.+..+ ..+..
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~-~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIM-DVVTEMGKYTEVKT 220 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHH-HHHHHHSTTSSCCE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHH-HHHHHhCCccCeeE
Confidence 567788888888887 999999999999996554444433222 2457899999999987654 44444432 22222
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
..++.......... ..+|+|+||+.|.+.+..... +.++++|||||||.......+...+........++.++|+|||
T Consensus 221 ~~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 221 AFGIKDSVPKGAKI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EC----------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEeCCcccccccC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 22222222222222 689999999999998877665 8899999999999544323333333333334566899999999
Q ss_pred ccc--HHHHHHHhhcCcCCCCCcccccCCCCCCcEEEecccee---eeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcE
Q 005436 205 TIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (697)
Q Consensus 205 T~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 279 (697)
|++ .+.+...+...+. .+.+..... .+...+...... ......+..+.....++++
T Consensus 300 T~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 300 TFSERVEKYAERFAPNAN----------------EIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp CCSTHHHHHHHHHSTTCE----------------EECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCE
T ss_pred CCCHHHHHHHHHhcCCCe----------------EEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcE
Confidence 995 4455544433221 111111111 111111111111 1223334444555567899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEe
Q 005436 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (697)
Q Consensus 280 LVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId 359 (697)
||||+++++++.+++.|.+. +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 361 LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred EEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 99999999999999988653 678999999999999999999999999999999999999999999999998
Q ss_pred cCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 360 ~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
++..... ....|..+|.||+|||||. .+|.|+.++++.
T Consensus 432 ~~~p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 432 YDMPLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp ----CC-----------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ECCCCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 6652100 0126788999999999999 789999999853
No 29
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.9e-36 Score=340.62 Aligned_cols=315 Identities=18% Similarity=0.238 Sum_probs=220.4
Q ss_pred CCCCccchhhHHH-HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHH-HHHHHhccccCCCeEEEEECccHHHHH
Q 005436 32 ASSIGYGYASIEK-QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 32 ~~~~~~~~~~~~~-~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~l-p~~l~~~~~~~~~~~Ivv~p~r~l~~~ 109 (697)
+++++.++..+.. ++..+|++.+ . +..+.++++++++||||||||+++ ..++... ...+.++++++|+|+|+.|
T Consensus 155 l~~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l-~~~~~~vLvl~PtreLa~Q 230 (618)
T 2whx_A 155 VTKSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREA-LKRRLRTLILAPTRVVAAE 230 (618)
T ss_dssp -------CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHH-HHTTCCEEEEESSHHHHHH
T ss_pred ccchHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHH-HhCCCeEEEEcChHHHHHH
Confidence 3455555554544 5888999866 2 888999999999999999999543 2233221 2245679999999999876
Q ss_pred HHHHHHHHHhCCcceeEEeeEeec-CCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHH
Q 005436 110 AVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLK 188 (697)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~ 188 (697)
.... +. +. .++|..+. +..... ...+.++|.+.+.+.+..++.+.++++|||||||++....+.....+.
T Consensus 231 i~~~-l~---~~----~v~~~~~~l~~~~tp-~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~ 301 (618)
T 2whx_A 231 MEEA-LR---GL----PIRYQTPAVKSDHTG-REIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 301 (618)
T ss_dssp HHHH-TT---TS----CEEECCTTSSCCCCS-SSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHH
T ss_pred HHHH-hc---CC----ceeEecccceeccCC-CceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHH
Confidence 5432 21 32 24454443 223334 678899999999998888888999999999999976444444444444
Q ss_pred HHHHhCCCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHH
Q 005436 189 KIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (697)
Q Consensus 189 ~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (697)
... .+++.++++||||++.. ...+... .+..+.+... ++ ...... ....+
T Consensus 302 ~~l-~~~~~q~il~SAT~~~~-~~~~~~~----------------~~~~~~v~~~-~~------~~~~~~----ll~~l- 351 (618)
T 2whx_A 302 TRV-EMGEAAAIFMTATPPGS-TDPFPQS----------------NSPIEDIERE-IP------ERSWNT----GFDWI- 351 (618)
T ss_dssp HHH-HHTSCEEEEECSSCTTC-CCSSCCC----------------SSCEEEEECC-CC------SSCCSS----SCHHH-
T ss_pred HHh-cccCccEEEEECCCchh-hhhhhcc----------------CCceeeeccc-CC------HHHHHH----HHHHH-
Confidence 333 23678999999999543 1122111 1113333221 11 111111 11111
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccc
Q 005436 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (697)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~G 348 (697)
.. ..+++||||+++++++.+++.|.+. +..+..+||. +|.++++.|++|+.+|||||+++++|
T Consensus 352 --~~--~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rG 414 (618)
T 2whx_A 352 --TD--YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMG 414 (618)
T ss_dssp --HH--CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTT
T ss_pred --Hh--CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcC
Confidence 11 3678999999999999999999875 6789999984 78889999999999999999999999
Q ss_pred cCCCCeEEEEecCcccceee--cCCCCcccccccccCHHhHHHhhcccCCCC--CcEEEEccC
Q 005436 349 LTLEGIVYVVDSGFSKQRFY--NPISDIENLVVAPISKASARQRAGRAGRVR--PGKCYRLYT 407 (697)
Q Consensus 349 vdip~v~~VId~g~~k~~~y--d~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~--~G~~~~l~~ 407 (697)
+|+| +++|||+|+.+.+.+ +...++......|.|.++|+||+|||||.+ +|.||.+++
T Consensus 415 iDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 415 ANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp CCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 9998 999999999877665 444455556667999999999999999993 899999997
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.2e-36 Score=349.19 Aligned_cols=337 Identities=17% Similarity=0.176 Sum_probs=180.7
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc----cCCCeEEEEECccHHHHHHHHHHHHHH---hCC
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVASRVAEE---MGV 121 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----~~~~~~Ivv~p~r~l~~~~~~~~~~~~---~~~ 121 (697)
...+++|.++++.+.+++++|+++|||+|||.+....+..... ..++++|+++|++.|+.|+... +.+. .+.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~-~~~~~~~~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSV-FSKYFERHGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHH-HHHHTTTTTC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHH-HHHHhccCCc
Confidence 3568999999999999999999999999999655444433211 1236789999999998875433 3333 367
Q ss_pred cceeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHH------
Q 005436 122 KVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR------ 192 (697)
Q Consensus 122 ~~~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~------ 192 (697)
.++..+|......... ....++|+|+||+.|++.+..+.. +.++++|||||||+......+. .++.....
T Consensus 91 ~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~-~i~~~~l~~~~~~~ 169 (696)
T 2ykg_A 91 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN-MIMFNYLDQKLGGS 169 (696)
T ss_dssp CEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHH-HHHHHHHHHHHTTC
T ss_pred eEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHH-HHHHHHHHHhhccc
Confidence 7766666321111100 012589999999999999877643 7889999999999655443332 22222222
Q ss_pred hCCCceEEEeccccc-------HHHHHHHhhcC---cCC---CCCcccc-cCC-CCCCc--EEEecccee-------e--
Q 005436 193 CRSDLRLIISSATIE-------AKSMSAFFHAR---KGR---RGLEGVE-LVP-RLEPA--ILSVEGRGF-------N-- 246 (697)
Q Consensus 193 ~~~~~~ii~~SAT~~-------~~~~~~~~~~~---~~~---~~~~~~~-~~~-~~~~~--~~~~~~~~~-------~-- 246 (697)
..+..++++||||+. .+.+..++... ... ....... ... ...+. ...++.+.. +
T Consensus 170 ~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l 249 (696)
T 2ykg_A 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 249 (696)
T ss_dssp CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHH
Confidence 146789999999996 23333322111 000 0000000 000 00000 000000000 0
Q ss_pred ---eE---EEecC-------------------------------------------------------------------
Q 005436 247 ---VQ---IHYVE------------------------------------------------------------------- 253 (697)
Q Consensus 247 ---v~---~~~~~------------------------------------------------------------------- 253 (697)
++ ..+..
T Consensus 250 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~ 329 (696)
T 2ykg_A 250 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 329 (696)
T ss_dssp HHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchh
Confidence 00 00000
Q ss_pred ---------------------C-------------------------CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHH
Q 005436 254 ---------------------E-------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQD 287 (697)
Q Consensus 254 ---------------------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (697)
. ............+.......+++++||||+++.
T Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~ 409 (696)
T 2ykg_A 330 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409 (696)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH
Confidence 0 000011111112222222235688999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEe--------cCCCCHHHHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEE
Q 005436 288 DIDATIQLLTEEARTSKKNSSGLIILPL--------YSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVV 358 (697)
Q Consensus 288 ~~~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VI 358 (697)
+++.+++.|.... ....+.+..+ ||+|+.++|.++++.|++ |+++|||||+++++|||+|++++||
T Consensus 410 ~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 410 LVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 9999999998741 0112556666 669999999999999998 9999999999999999999999999
Q ss_pred ecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHh
Q 005436 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (697)
Q Consensus 359 d~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 411 (697)
++++ |.|..+|.||+|| ||.++|.|+.|+++.+.
T Consensus 485 ~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 485 LYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp EESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred EeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 9555 4555667799999 99999999999998766
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-35 Score=331.20 Aligned_cols=321 Identities=17% Similarity=0.220 Sum_probs=214.5
Q ss_pred CcHHHHHHHHHHHh--cCCEEEEEcCCCChHH--HHHHHHHH--hcccc--CCCeEEEEECccHHHHHHHHHHHHHH---
Q 005436 50 PVYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQYLK--EAGWA--DGGRVIACTQPRRLAVQAVASRVAEE--- 118 (697)
Q Consensus 50 Pi~~~q~~i~~~l~--~~~~~ii~apTGsGKT--~~lp~~l~--~~~~~--~~~~~Ivv~p~r~l~~~~~~~~~~~~--- 118 (697)
..+++|.++++.+. ++++++++|||||||| +++|.+.. ..... .+.++|+++|+++|+.|.... +...
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~-~~~~~~~ 172 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE-VKKIHDM 172 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH-HHHHHhh
Confidence 47889999999988 6789999999999999 44443322 21111 124789999999999874433 2221
Q ss_pred -hCC---cceeEEeeEee---cCCcCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcC--hhHHHHHH
Q 005436 119 -MGV---KVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLL 187 (697)
Q Consensus 119 -~~~---~~~~~~g~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~l~~~l 187 (697)
.+. .+....|.... ....... .++|+|+||+.|+..+... ..+.++++|||||||...-. ...+..++
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~ 251 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 251 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcC-CCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHH
Confidence 122 22222221110 0001122 5789999999999877653 23788999999999943211 22233333
Q ss_pred HHHHHh----CCCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEecc-------ceeeeEEEec-C
Q 005436 188 KKIQRC----RSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-------RGFNVQIHYV-E 253 (697)
Q Consensus 188 ~~~~~~----~~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~-~ 253 (697)
..+... .++.+++++|||++.. .+...+...+. .+.+.. ....+...+. .
T Consensus 252 ~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 252 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc----------------eEEEeccCCCCccccccCceEEEEC
Confidence 333332 3478999999999643 33332222110 111100 0011111111 1
Q ss_pred CCcchHHHHHHHHHHH-HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCC
Q 005436 254 EPVSDYVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (697)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (697)
.............+.. +.....++++||||++++.++.+++.|.+... .++.+..+||+|++++|.++++.|+
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~ 389 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFK 389 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHh
Confidence 1112222233333333 23335678999999999999999999988742 2678999999999999999999999
Q ss_pred CCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 333 ~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
+|+.+|||||+++++|||+|++++||+++. |.|..+|+||+|||||. .+|.|+.++++.+.
T Consensus 390 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 390 KDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 999999999999999999999999999776 77888999999999999 78999999997654
Q ss_pred h
Q 005436 412 V 412 (697)
Q Consensus 412 ~ 412 (697)
.
T Consensus 452 ~ 452 (563)
T 3i5x_A 452 P 452 (563)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-34 Score=327.96 Aligned_cols=319 Identities=17% Similarity=0.213 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHHh--cCCEEEEEcCCCChHH--HHHHHHHH--hccc--cCCCeEEEEECccHHHHHHHHHHHHHHh---
Q 005436 51 VYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQYLK--EAGW--ADGGRVIACTQPRRLAVQAVASRVAEEM--- 119 (697)
Q Consensus 51 i~~~q~~i~~~l~--~~~~~ii~apTGsGKT--~~lp~~l~--~~~~--~~~~~~Ivv~p~r~l~~~~~~~~~~~~~--- 119 (697)
.+++|.++++.+. ++++++++|||||||| +++|.+.. .... ..+.++||++|+++|+.|.... +....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~-~~~~~~~~ 122 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE-VKKIHDMN 122 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH-HHHHHHHC
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHH-HHHHHhhc
Confidence 7899999999988 6789999999999999 44554322 1111 1234789999999998874433 22221
Q ss_pred -CC---cceeEEeeEeec---CCcCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcC--hhHHHHHHH
Q 005436 120 -GV---KVGEEVGYTIRF---EDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLK 188 (697)
Q Consensus 120 -~~---~~~~~~g~~~~~---~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~l~~~l~ 188 (697)
+. .+....|..... ...... .++|+|+||+.|+..+... ..+..+++|||||||+..-. .+.+..++.
T Consensus 123 ~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 123 YGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201 (579)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccccceEEEEEECCccHHHHHHHHhcC-CCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHH
Confidence 22 222222211100 000112 5789999999999877653 24788999999999943211 122333333
Q ss_pred HHHHhC----CCceEEEecccccHH--HHHHHhhcCcCCCCCcccccCCCCCCcEEEecc-------ceeeeEEEec-CC
Q 005436 189 KIQRCR----SDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-------RGFNVQIHYV-EE 254 (697)
Q Consensus 189 ~~~~~~----~~~~ii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~-~~ 254 (697)
.+.... ++.+++++|||++.. .+...+...+. .+.+.. ....+...+. ..
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~----------------~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCc----------------eEEEeecCccccccccccceEEEEec
Confidence 333322 378999999999643 22222221110 111110 0011111111 11
Q ss_pred CcchHHHHHHHHHHHH-HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCC
Q 005436 255 PVSDYVQAAVSTVLLI-HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (697)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (697)
............+... .....++++||||+++.+++.+++.|.+... .++.+..+||+|++++|.++++.|++
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~ 339 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKK 339 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhc
Confidence 1122222333333332 3335678899999999999999999988742 26789999999999999999999999
Q ss_pred CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 334 g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
|+.+|||||+++++|||+|++++||+++. |.|..+|+||+|||||. .+|.|+.++++.+.
T Consensus 340 g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 340 DESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 99999999999999999999999999776 77888999999999999 78999999997653
No 33
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.8e-34 Score=325.35 Aligned_cols=364 Identities=17% Similarity=0.170 Sum_probs=246.0
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
.++++++++||||||||+.+.+.+... +..++++|+|+|+.|...+ + ...|..++..+|........... ..
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~-l-~~~g~~v~lltG~~~~iv~TpGr-~~ 224 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEK-S-NAAGVPCDLVTGEERVTVQPNGK-QA 224 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHH-H-HHTTCCEEEECSSCEECCSTTCC-CC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHH-H-HhcCCcEEEEECCeeEEecCCCc-cc
Confidence 367899999999999998666655543 2348899999998875544 3 34588888777754442211111 47
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC-CCceEEEeccccc-HHHHHHHhhcCcC
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIE-AKSMSAFFHARKG 220 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~ii~~SAT~~-~~~~~~~~~~~~~ 220 (697)
+++++|++.+. ....+++|||||+|++ .+.++...+...+.... .+.+++++|||.+ ...+....+...
T Consensus 225 ~il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~- 295 (677)
T 3rc3_A 225 SHVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV- 295 (677)
T ss_dssp SEEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE-
T ss_pred ceeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce-
Confidence 78899986542 3577899999999954 55555555555555554 6789999999962 222222222111
Q ss_pred CCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 005436 221 RRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEA 300 (697)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~ 300 (697)
.+....+..+ ..+........ ..... ..+|||+++++++.+++.|.+.
T Consensus 296 ----------------~v~~~~r~~~--l~~~~~~l~~l------------~~~~~-g~iIf~~s~~~ie~la~~L~~~- 343 (677)
T 3rc3_A 296 ----------------EVRDYKRLTP--ISVLDHALESL------------DNLRP-GDCIVCFSKNDIYSVSRQIEIR- 343 (677)
T ss_dssp ----------------EEEECCCSSC--EEECSSCCCSG------------GGCCT-TEEEECSSHHHHHHHHHHHHHT-
T ss_pred ----------------EEEEeeecch--HHHHHHHHHHH------------HhcCC-CCEEEEcCHHHHHHHHHHHHhc-
Confidence 1111112112 12221111100 11123 3578899999999999999874
Q ss_pred hhccCCCCCeEEEEecCCCCHHHHhhccCCCCC--CCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccccc
Q 005436 301 RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLV 378 (697)
Q Consensus 301 ~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~--g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~ 378 (697)
+..+.++||+|++++|.++++.|++ |+++|||||+++++|||+ ++++||++|+.|. .||+..+. .
T Consensus 344 --------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~-- 410 (677)
T 3rc3_A 344 --------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E-- 410 (677)
T ss_dssp --------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--------------
T ss_pred --------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--
Confidence 6789999999999999999999998 899999999999999999 8999999999887 77776433 3
Q ss_pred ccccCHHhHHHhhcccCCCC----CcEEEEccChh--HhhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCCCCCCCC
Q 005436 379 VAPISKASARQRAGRAGRVR----PGKCYRLYTEE--YFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASP 452 (697)
Q Consensus 379 ~~~~S~~~~~Qr~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~~~~~~p 452 (697)
..|+|.++|.||+|||||.+ +|.||++++++ .+.. +.....|++.+.++....++++.++.. +
T Consensus 411 ~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l 479 (677)
T 3rc3_A 411 LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFAYH----------L 479 (677)
T ss_dssp -CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHHHH----------S
T ss_pred cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHhcc----------C
Confidence 34999999999999999995 58999999877 5555 677888999998888888888877621 1
Q ss_pred CHHHHHHHHHHHHHcCCccCCC---C---CChHhhcccccCCCChhhHHHHHhh
Q 005436 453 PPEAMIRALEVLYSLGVLDDDA---K---LTSPTGFQVAEIPLEPMISKMILSS 500 (697)
Q Consensus 453 ~~~~~~~a~~~L~~lgald~~~---~---lT~~lG~~~~~~pl~p~~~~~l~~~ 500 (697)
+...+...++.+..++.+|..- + .. .++..+..+|++...--.++.+
T Consensus 480 ~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~-~la~~l~~~~L~~~~~~~f~~a 532 (677)
T 3rc3_A 480 PDATLSNLIDIFVDFSQVDGQYFVCNMDDFK-FSAELIQHIPLSLRVRYVFCTA 532 (677)
T ss_dssp TTSCHHHHHHHHHHHCBCCTTEEECCCHHHH-HHHHHTTTSCCCHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhhcccchhhccchHHHH-HHHHHHhhCCCCHHHHhheEeC
Confidence 1123566677777777776332 1 22 2455666666666554444444
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-34 Score=319.52 Aligned_cols=336 Identities=18% Similarity=0.173 Sum_probs=223.4
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCC---cce
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~---~~~ 124 (697)
.++++++|.+++..+.++ ++++.+|||+|||.++..++.......+.++++++|++.|+.|. .+.+.+..+. .++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~-~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQH-AESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHH-HHHHHHHBCSCGGGEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH-HHHHHHHhCcchhheE
Confidence 457899999999999998 89999999999997766665543223566789999999998754 4446666665 555
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
...|.....+........+|+|+|++.|.+.+..... +.++++||+||||.. .+......+.+.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~-~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA-VGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC-STTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc-CCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 5555322111111111578999999999998876654 889999999999943 33333444555555566788999999
Q ss_pred cccc--HHHHHHHhhcCcCCCCCccccc-------CCCCCCcEEEecccee--eeE----------------EEec----
Q 005436 204 ATIE--AKSMSAFFHARKGRRGLEGVEL-------VPRLEPAILSVEGRGF--NVQ----------------IHYV---- 252 (697)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~v~----------------~~~~---- 252 (697)
||+. .+.+.+++.............. ................ .+. ..+.
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9993 5556555543221100000000 0000000000000000 000 0000
Q ss_pred C-C-----------------------------------------------------------------------------
Q 005436 253 E-E----------------------------------------------------------------------------- 254 (697)
Q Consensus 253 ~-~----------------------------------------------------------------------------- 254 (697)
. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0 0
Q ss_pred ----------------CcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-
Q 005436 255 ----------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS- 317 (697)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~- 317 (697)
............+........++++||||+++..++.+++.|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 000001111111112222256889999999999999999999875 678999999
Q ss_pred -------CCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHh
Q 005436 318 -------GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (697)
Q Consensus 318 -------~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr 390 (697)
+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.+...|.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999766 6788899999
Q ss_pred hcccCCCCCcEEEEccChhHhhh
Q 005436 391 AGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 391 ~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
+|||||.++|.+|+|+++.+.+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999999765543
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.1e-34 Score=322.88 Aligned_cols=346 Identities=16% Similarity=0.129 Sum_probs=171.0
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc----cCCCeEEEEECccHHHHHHHHH--HHHHHhCC
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~ 121 (697)
.+.++++|.++++.+.+++++++++|||||||.+....+..... ..++++|+++|++.|+.|.... .+....+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 45678999999999999999999999999999443333322211 1156789999999999875433 23333477
Q ss_pred cceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----
Q 005436 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (697)
Q Consensus 122 ~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (697)
.++..+|........ ......+|+|+||+.|.+.+.... .+.++++|||||||...... ....++..+...
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhccc
Confidence 777766643222111 011157899999999999887754 38899999999999544333 344444333332
Q ss_pred CCCceEEEeccccc---HHHHHHH----------hhcCcCCCCCcc-cc---cCCCCCCcEEEeccceee----------
Q 005436 194 RSDLRLIISSATIE---AKSMSAF----------FHARKGRRGLEG-VE---LVPRLEPAILSVEGRGFN---------- 246 (697)
Q Consensus 194 ~~~~~ii~~SAT~~---~~~~~~~----------~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~---------- 246 (697)
.+..++++||||+. ...+.+| ++.......... .. .................+
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 46789999999992 2222222 221100000000 00 000000000000000000
Q ss_pred ------------eEEE----ecCCC-------------------------------------------------------
Q 005436 247 ------------VQIH----YVEEP------------------------------------------------------- 255 (697)
Q Consensus 247 ------------v~~~----~~~~~------------------------------------------------------- 255 (697)
.... .....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 0000 00000
Q ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 005436 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (697)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~ 289 (697)
...........+........++++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 0000011111111222225678999999999999
Q ss_pred HHHHHHHHHHhhhcc---CCCCCeEEEEecCCCCHHHHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEEecCcccc
Q 005436 290 DATIQLLTEEARTSK---KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (697)
Q Consensus 290 ~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~ 365 (697)
+.+++.|.+...... ....+.....+||+|+.++|.++++.|++ |+.+|||||+++++|+|+|++++||+++.
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--- 480 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 480 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC---
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 999999865310000 01124455677899999999999999999 99999999999999999999999999666
Q ss_pred eeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 366 ~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
|.|...|.||+|| ||.++|.||.|+++.+.+.
T Consensus 481 ---------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 7788999999999 9999999999999877654
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.4e-35 Score=315.57 Aligned_cols=308 Identities=17% Similarity=0.127 Sum_probs=203.6
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHH--
Q 005436 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE-- 118 (697)
Q Consensus 41 ~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~-- 118 (697)
++.+.......+++|.++++.+.++++++++||||||||......+... ...+.++++++|+++|+.|.... +...
T Consensus 12 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~-~~~~~~ 89 (414)
T 3oiy_A 12 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLER-LQKLAD 89 (414)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHH-HHHHCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHHHHH-HHHHcc
Confidence 3444445567789999999999999999999999999995222222221 23567899999999998875443 3333
Q ss_pred hCCcceeEEeeEeecC-----CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC---------cC-hhHH
Q 005436 119 MGVKVGEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS---------IS-TDIL 183 (697)
Q Consensus 119 ~~~~~~~~~g~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~---------~~-~d~l 183 (697)
.+.+++..+|.....+ .....+.++|+|+||+.|.+.+.. ..+.++++||+||||... ++ .++.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~ 168 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 168 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCc
Confidence 3555555554221100 001121489999999999876543 336789999999999421 11 1111
Q ss_pred HHHHHHHHH-hC-----------CCceEEEecccc-cHH---H-HHHHhhcCcCCCCCcccccCCCCCCcEEEeccceee
Q 005436 184 LGLLKKIQR-CR-----------SDLRLIISSATI-EAK---S-MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN 246 (697)
Q Consensus 184 ~~~l~~~~~-~~-----------~~~~ii~~SAT~-~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (697)
...+..+.. .. ++.+++++|||+ +.. . +..++...... .......
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 230 (414)
T 3oiy_A 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR------------------LVSVARN 230 (414)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC------------------CCCCCCS
T ss_pred HHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc------------------ccccccc
Confidence 121222222 11 678999999995 322 2 22222211100 0011112
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHHh
Q 005436 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQE 325 (697)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~ 325 (697)
+...+......+. ....+.. .++++||||+++++++.+++.|... ++.+. .+||. +|+
T Consensus 231 i~~~~~~~~~~~~---l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~ 289 (414)
T 3oiy_A 231 ITHVRISSRSKEK---LVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN 289 (414)
T ss_dssp EEEEEESSCCHHH---HHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH
T ss_pred chheeeccCHHHH---HHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH
Confidence 3333333322222 2222211 2478999999999999999999875 67787 88985 344
Q ss_pred hccCCCCCCCcEEEEe----cCccccccCCCC-eEEEEecCcccceeecCCCCcccccccc--cCHHhHHHhhcccCCCC
Q 005436 326 QVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRFYNPISDIENLVVAP--ISKASARQRAGRAGRVR 398 (697)
Q Consensus 326 ~v~~~f~~g~~kilva----T~i~e~Gvdip~-v~~VId~g~~k~~~yd~~~~~~~l~~~~--~S~~~~~Qr~GRaGR~~ 398 (697)
++.|++|+.+|||| |+++++|+|+|+ |++||++|. | .|..+|.||+|||||.+
T Consensus 290 --~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 290 --FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp --HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEE
T ss_pred --HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCC
Confidence 89999999999999 999999999999 999999777 6 78999999999999983
Q ss_pred -----CcEEEEccChhH
Q 005436 399 -----PGKCYRLYTEEY 410 (697)
Q Consensus 399 -----~G~~~~l~~~~~ 410 (697)
+|.|+.++.+..
T Consensus 350 ~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 350 NGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp TTEECCEEEEEECCCHH
T ss_pred CCCCcceEEEEEEccHH
Confidence 799999995443
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.6e-34 Score=324.42 Aligned_cols=345 Identities=17% Similarity=0.194 Sum_probs=192.0
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc----cCCCeEEEEECccHHHHHHHHH--HHHHHhCCc
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVAS--RVAEEMGVK 122 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~~ 122 (697)
+.++++|.++++.+.+++++++++|||+|||.+....+..... ..++++|+++|+++|+.|.... .+....+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 5678999999999999999999999999999443333322211 1266789999999999875433 333444777
Q ss_pred ceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh------
Q 005436 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC------ 193 (697)
Q Consensus 123 ~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~------ 193 (697)
++..+|........ ......+|+|+||+.|.+.+.... .+.++++|||||||....... ...++......
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhhhcccc
Confidence 77766643221110 001147899999999999887654 378899999999995543333 33333333322
Q ss_pred CCCceEEEecccccH----------HHHH---HHhhcCcCCCCC-cccc---cCCCCCCcEEEeccceee-eE-------
Q 005436 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGL-EGVE---LVPRLEPAILSVEGRGFN-VQ------- 248 (697)
Q Consensus 194 ~~~~~ii~~SAT~~~----------~~~~---~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~-v~------- 248 (697)
.++.++++||||+.. +.+. ..++........ .... .................+ ..
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 266899999999932 2222 222211000000 0000 000000000000000000 00
Q ss_pred ----------------------EEecC------------------CC---------------------------------
Q 005436 249 ----------------------IHYVE------------------EP--------------------------------- 255 (697)
Q Consensus 249 ----------------------~~~~~------------------~~--------------------------------- 255 (697)
..+.. ..
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00000 00
Q ss_pred -----------------------------------------------cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH
Q 005436 256 -----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD 288 (697)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 288 (697)
...........+.......+++++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 000111111122222233467899999999999
Q ss_pred HHHHHHHHHHHhhhc---cCCCCCeEEEEecCCCCHHHHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEEecCccc
Q 005436 289 IDATIQLLTEEARTS---KKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (697)
Q Consensus 289 ~~~l~~~L~~~~~~~---~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VId~g~~k 364 (697)
++.+++.|....... .....+.....+||+|++++|.++++.|++ |+.+|||||+++++|+|+|++++||+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----- 476 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL----- 476 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE-----
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE-----
Confidence 999999997642100 001113445667789999999999999999 99999999999999999999999999
Q ss_pred ceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 365 ~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
||++ .|..+|.||+|| ||..+|.||.|+++.+...
T Consensus 477 ---~d~p----------~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 477 ---YEYV----------GNVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp ---ESCC----------SSCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred ---eCCC----------CCHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 4444 444555599999 9999999999999876543
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.4e-34 Score=308.97 Aligned_cols=290 Identities=20% Similarity=0.215 Sum_probs=193.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecC-CcCCC
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE-DFTNK 139 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 139 (697)
++.++++++++||||||||..+...++......+.++++++|+++|+.|.... +. +.. +++....- ...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~-l~---~~~----v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEA-FH---GLD----VKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH-TT---TSC----EEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHH-Hh---cCC----eEEecccceeccCC
Confidence 45688999999999999995432222222223456799999999998875433 21 222 22332221 12223
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCc
Q 005436 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (697)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~ 219 (697)
..-+.+++.+.+...+.....+.++++|||||+|......+....++..+.. ..+.++++||||++... ..+...
T Consensus 76 -~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~-- 150 (440)
T 1yks_A 76 -REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHS-- 150 (440)
T ss_dssp -SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC--
T ss_pred -ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhc--
Confidence 4456677778887777777779999999999999764444455555555443 45789999999995431 111110
Q ss_pred CCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 005436 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (697)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~ 299 (697)
..++..+.. .+......... ..+ .. .++++||||+++++++.+++.|.+.
T Consensus 151 --------------~~~~~~~~~-------~~~~~~~~~~~----~~l---~~--~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 151 --------------NGEIEDVQT-------DIPSEPWNTGH----DWI---LA--DKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp --------------SSCEEEEEC-------CCCSSCCSSSC----HHH---HH--CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred --------------CCCeeEeee-------ccChHHHHHHH----HHH---Hh--cCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 001111111 11111111111 111 11 3678999999999999999999875
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceee-cCCCCccccc
Q 005436 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFY-NPISDIENLV 378 (697)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~y-d~~~~~~~l~ 378 (697)
++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++||++|..+.+.| +...++....
T Consensus 201 ---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 201 ---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp ---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 678999999 4789999999999999999999999999999 999999999888877 3444455555
Q ss_pred ccccCHHhHHHhhcccCCC--CCcEEEEccC
Q 005436 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (697)
Q Consensus 379 ~~~~S~~~~~Qr~GRaGR~--~~G~~~~l~~ 407 (697)
..|.+.++|.||+||+||. .+|.||.+++
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 6699999999999999996 6899999985
No 39
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-33 Score=306.53 Aligned_cols=286 Identities=19% Similarity=0.191 Sum_probs=196.9
Q ss_pred cCCEEEEEcCCCChHHHHH-HHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 64 THATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~l-p~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
++++++++||||||||... +.++.. ....+.++++++|++.|+.|.. +.+. +..++...|. .+..... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~-~~~~g~~~lvl~Pt~~La~Q~~-~~~~---~~~v~~~~~~---~~~~~~~-~~ 71 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVRE-AVKKRLRTVILAPTRVVASEMY-EALR---GEPIRYMTPA---VQSERTG-NE 71 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHHH-HHTT---TSCEEEC------------C-CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEECcHHHHHHHHH-HHhC---CCeEEEEecC---ccccCCC-Cc
Confidence 4789999999999999543 323322 2335568999999999977633 2222 4444322221 1222233 56
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcCCC
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRR 222 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~~~ 222 (697)
.+.++|.+.+.+.+..+..+.++++|||||+|..+...+.....++.+. ..++.++++||||++.. +..+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~------ 143 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPP------ 143 (431)
T ss_dssp SEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCC------
T ss_pred eEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcC------
Confidence 7888999999888887777999999999999976544445555555544 34689999999999642 101000
Q ss_pred CCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 005436 223 GLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (697)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~ 302 (697)
...++..+... +........ . .... ..++++||||+++++++.+++.|.+.
T Consensus 144 ----------~~~~i~~~~~~-------~~~~~~~~~----~----~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~--- 194 (431)
T 2v6i_A 144 ----------SNSPIIDEETR-------IPDKAWNSG----Y----EWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA--- 194 (431)
T ss_dssp ----------CSSCCEEEECC-------CCSSCCSSC----C----HHHH-SCSSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred ----------CCCceeecccc-------CCHHHHHHH----H----HHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc---
Confidence 01112222111 111111111 1 1111 23678999999999999999999765
Q ss_pred ccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCccccccccc
Q 005436 303 SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (697)
Q Consensus 303 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~ 382 (697)
+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+||++|..+.+.|| ..++......|.
T Consensus 195 ------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~ 262 (431)
T 2v6i_A 195 ------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAI 262 (431)
T ss_dssp ------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEEC
T ss_pred ------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccC
Confidence 6789999997 578899999999999999999999999999 9999999999999998 566666667799
Q ss_pred CHHhHHHhhcccCCCC-CcEEEEccC
Q 005436 383 SKASARQRAGRAGRVR-PGKCYRLYT 407 (697)
Q Consensus 383 S~~~~~Qr~GRaGR~~-~G~~~~l~~ 407 (697)
+.++|.||+||+||.+ .+.|+.+|.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999994 333444443
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.8e-33 Score=324.45 Aligned_cols=346 Identities=15% Similarity=0.136 Sum_probs=179.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc----cCCCeEEEEECccHHHHHHHHH--HHHHHhCC
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~----~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~ 121 (697)
...++++|.+++..+.+++++++++|||+|||.+....+..... ..++++||++|++.|+.|.... .+....+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 34578999999999999999999999999999443333322211 1166789999999999875433 23333478
Q ss_pred cceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----
Q 005436 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (697)
Q Consensus 122 ~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (697)
+++..+|........ ......+|+|+||+.|.+.+..... +.++++|||||||...... ....++..+...
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 887777744222111 1112578999999999998876543 7789999999999544333 344444444332
Q ss_pred CCCceEEEecccccH----------HHHHH---HhhcCcCCCCCcc---c-ccCCCCCCcEEEecccee-----------
Q 005436 194 RSDLRLIISSATIEA----------KSMSA---FFHARKGRRGLEG---V-ELVPRLEPAILSVEGRGF----------- 245 (697)
Q Consensus 194 ~~~~~ii~~SAT~~~----------~~~~~---~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~----------- 245 (697)
.+..++++||||+.. +.+.. .++.......... . ............+..+..
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999931 22222 2221110000000 0 000000000111110000
Q ss_pred -----------e------eE-EEecC--------C----------C----------------------------------
Q 005436 246 -----------N------VQ-IHYVE--------E----------P---------------------------------- 255 (697)
Q Consensus 246 -----------~------v~-~~~~~--------~----------~---------------------------------- 255 (697)
. .. ..+.. . .
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 0 00 00000 0 0
Q ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 005436 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (697)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~ 289 (697)
...........+........++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000000111111112235678999999999999
Q ss_pred HHHHHHHHHHhhhcc---CCCCCeEEEEecCCCCHHHHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEEecCcccc
Q 005436 290 DATIQLLTEEARTSK---KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (697)
Q Consensus 290 ~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~ 365 (697)
+.+++.|.+...... ....+.....+||+|+..+|.++++.|++ |+.+|||||+++++|||+|++++||+++.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~--- 721 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC---
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 999999975310000 00124456677999999999999999999 99999999999999999999999999666
Q ss_pred eeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 366 ~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
|.|..+|.||+|| ||.++|.||.|+++.+...
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ---------------CSCHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 7788999999999 9999999999999876543
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.1e-33 Score=314.52 Aligned_cols=289 Identities=19% Similarity=0.223 Sum_probs=202.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeec-CCcCCCC
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNKD 140 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 140 (697)
+.++++++++||||||||+.+...++......+.++++++|+++|+.|.... +. +..+ ++.... ......
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~-l~---~~~i----~~~~~~l~~v~tp- 308 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEA-LR---GLPV----RYLTPAVQREHSG- 308 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH-TT---TSCC----EECCC---CCCCS-
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHH-Hh---cCCe----eeecccccccCCH-
Confidence 3489999999999999995432222222223456799999999998875432 22 2222 222221 112233
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccccHHHHHHHhhcCcC
Q 005436 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKG 220 (697)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~~~~~~ 220 (697)
...+.+++.+.+.+.+..+..+.++++|||||+|+.+...+.....++.... ..+.++++||||++.. +..+..
T Consensus 309 ~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~---- 382 (673)
T 2wv9_A 309 NEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPD---- 382 (673)
T ss_dssp CCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCC----
T ss_pred HHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcc----
Confidence 4567788899998888887779999999999999765555555666655543 3578999999999543 101100
Q ss_pred CCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 005436 221 RRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEA 300 (697)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~ 300 (697)
...++..+... +......... .. +. ..++++||||+++++++.+++.|.+.
T Consensus 383 ------------~~~~i~~v~~~-------~~~~~~~~~l----~~---l~--~~~~~~lVF~~s~~~~e~la~~L~~~- 433 (673)
T 2wv9_A 383 ------------TNSPVHDVSSE-------IPDRAWSSGF----EW---IT--DYAGKTVWFVASVKMSNEIAQCLQRA- 433 (673)
T ss_dssp ------------CSSCEEEEECC-------CCSSCCSSCC----HH---HH--SCCSCEEEECSSHHHHHHHHHHHHTT-
T ss_pred ------------cCCceEEEeee-------cCHHHHHHHH----HH---HH--hCCCCEEEEECCHHHHHHHHHHHHhC-
Confidence 01112222211 1111111111 11 11 24788999999999999999999764
Q ss_pred hhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCccccee--ecCCCCccccc
Q 005436 301 RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRF--YNPISDIENLV 378 (697)
Q Consensus 301 ~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~--yd~~~~~~~l~ 378 (697)
++.+..+||. +|.++++.|++|+++|||||+++++|||+| +++||++|....+. ||+..++..+.
T Consensus 434 --------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~ 500 (673)
T 2wv9_A 434 --------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSV 500 (673)
T ss_dssp --------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECC
T ss_pred --------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecc
Confidence 6789999994 789999999999999999999999999999 99999999765543 67666666666
Q ss_pred ccccCHHhHHHhhcccCCC--CCcEEEEccC
Q 005436 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (697)
Q Consensus 379 ~~~~S~~~~~Qr~GRaGR~--~~G~~~~l~~ 407 (697)
..|.|.++|.||+||+||. ++|.||.++.
T Consensus 501 d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 501 PSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp SEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 6799999999999999998 6899999975
No 42
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=327.95 Aligned_cols=338 Identities=19% Similarity=0.194 Sum_probs=199.1
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-----cccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-----GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~-----~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
+..+.++.+|.++++.+.+++++++.+|||+|||.+....+... ....++++||++|++.|+.|++.+.+....+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999995444333321 1112367899999999999884566666665
Q ss_pred --CcceeEEeeEeecCCcC-CCCCceEEEechHHHHHHHhcC------C-CCCCCcEEEEeCCCcCCc---ChhHHHHHH
Q 005436 121 --VKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDD------P-LLTKYSVIMVDEAHERSI---STDILLGLL 187 (697)
Q Consensus 121 --~~~~~~~g~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~------~-~l~~~~~iIiDE~Her~~---~~d~l~~~l 187 (697)
..++..+|.....+... .....+|+|+||+.|.+.+... . .+.++++|||||||.... ....+..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 57777777543322111 0126899999999999887432 2 378899999999994221 112222222
Q ss_pred HH-HHHhC---------CCceEEEecccccH----------HHHH---HHhhcCcCCCCCcc-ccc---CCCCCCcEEEe
Q 005436 188 KK-IQRCR---------SDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-VEL---VPRLEPAILSV 240 (697)
Q Consensus 188 ~~-~~~~~---------~~~~ii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 240 (697)
.. +.... +..++|+||||+.. +.+. ..++.......... ... ..........+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 22222 67899999999953 1222 22222110000000 000 00000000000
Q ss_pred ccceeee----------------EEEecCC-Cc-----------------------------------------------
Q 005436 241 EGRGFNV----------------QIHYVEE-PV----------------------------------------------- 256 (697)
Q Consensus 241 ~~~~~~v----------------~~~~~~~-~~----------------------------------------------- 256 (697)
....... ....... ..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000 00
Q ss_pred --------------------------------chHHH-------------------------HHHHHHHHHHhcCC-CCc
Q 005436 257 --------------------------------SDYVQ-------------------------AAVSTVLLIHDKEP-PGD 278 (697)
Q Consensus 257 --------------------------------~~~~~-------------------------~~~~~~~~~~~~~~-~~~ 278 (697)
..+.. .....+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00000 00011111122223 788
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC--------CCHHHHhhccCCCCCCCcEEEEecCccccccC
Q 005436 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG--------LSRAEQEQVFSPTPRGKRKVVISTNIAETSLT 350 (697)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvd 350 (697)
+||||+++..++.+++.|.+.. .....++.+..+||+ |+.++|.++++.|++|+.+|||||+++++|||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 9999999999999999997530 011126889999999 99999999999999999999999999999999
Q ss_pred CCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEcc
Q 005436 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLY 406 (697)
Q Consensus 351 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~ 406 (697)
+|++++||++++ |.|..+|.||+|||||.+ .++.++
T Consensus 480 ip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 480 IKECNIVIRYGL------------------VTNEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS--CEEEEE
T ss_pred cccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC--ceEEEE
Confidence 999999999666 778899999999987754 444444
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=1.1e-31 Score=317.33 Aligned_cols=346 Identities=16% Similarity=0.155 Sum_probs=180.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccC----CCeEEEEECccHHHHHHHHH--HHHHHhCC
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD----GGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~----~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~ 121 (697)
...++.+|.++++.+.+++++++.+|||+|||.+....+....... +++++|++|++.|+.|.... .+....+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4568899999999999999999999999999955544444332221 56789999999999875443 23333477
Q ss_pred cceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----
Q 005436 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (697)
Q Consensus 122 ~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (697)
.++..+|........ ......+|+|+||+.|.+.+..... +.++++|||||||...... ....++..+...
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 777777744222111 1111578999999999998876543 7789999999999544333 344444444332
Q ss_pred CCCceEEEecccccH----------HHHHH---HhhcCcCCCCCcc-cc---cCCCCCCcEEEeccceee----------
Q 005436 194 RSDLRLIISSATIEA----------KSMSA---FFHARKGRRGLEG-VE---LVPRLEPAILSVEGRGFN---------- 246 (697)
Q Consensus 194 ~~~~~ii~~SAT~~~----------~~~~~---~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~---------- 246 (697)
.+..++++||||+.. +.+.+ .++.......... .. ...........+..+..+
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 567899999999932 11222 1221100000000 00 000000000111100000
Q ss_pred ------------------eEEEecCC-------------------Ccc--------------------------------
Q 005436 247 ------------------VQIHYVEE-------------------PVS-------------------------------- 257 (697)
Q Consensus 247 ------------------v~~~~~~~-------------------~~~-------------------------------- 257 (697)
........ +..
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 00000000 000
Q ss_pred ----hHHH----------------------------------------HHHHHHHHHH----hcCCCCcEEEEcCCHHHH
Q 005436 258 ----DYVQ----------------------------------------AAVSTVLLIH----DKEPPGDILVFLTGQDDI 289 (697)
Q Consensus 258 ----~~~~----------------------------------------~~~~~~~~~~----~~~~~~~iLVF~~~~~~~ 289 (697)
.++. .....+..+. ....++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 0000 0001111111 124568999999999999
Q ss_pred HHHHHHHHHHhhh--ccC-CCCCeEEEEecCCCCHHHHhhccCCCCC-CCcEEEEecCccccccCCCCeEEEEecCcccc
Q 005436 290 DATIQLLTEEART--SKK-NSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (697)
Q Consensus 290 ~~l~~~L~~~~~~--~~~-~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~ 365 (697)
+.+++.|.+.... ... ...+.....+||+|+..+|.++++.|++ |+++|||||+++++|||+|++++||+++.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 9999999864100 000 0114456677999999999999999999 99999999999999999999999999655
Q ss_pred eeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChhHhhh
Q 005436 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 366 ~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 413 (697)
|.|..+|.||+|| ||..+|.||.|+++.+.+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHHH
Confidence 6678888999999 9999999999999876543
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.3e-32 Score=308.65 Aligned_cols=306 Identities=16% Similarity=0.184 Sum_probs=199.8
Q ss_pred cCCCcHHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHH--
Q 005436 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE-- 118 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~------~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~-- 118 (697)
....++.+|.++++.+.++ .+++++||||||||......+... ...+.++++++|++.|+.|.... +.+.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~~~~-l~~~~~ 442 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHYRR-TVESFS 442 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHHHH-HHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHH-HHHHhh
Confidence 3446889999988888764 589999999999995554444433 22456799999999998875443 3333
Q ss_pred -hCCcceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 005436 119 -MGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (697)
Q Consensus 119 -~~~~~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (697)
.+.+++..+|.....+. ....+..+|+|+|++.+.+ ...+.++++|||||+|..+.... ..+..
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~ 512 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMN 512 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCS
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHH
Confidence 35666666663322111 0112258999999987643 34588999999999995432210 11122
Q ss_pred hCCCceEEEecccccHHHHHHHh-hcCcCCCCCcccccCCCCCCcEEE-eccceeeeEEEecCCCcchHHHHHHHHHHHH
Q 005436 193 CRSDLRLIISSATIEAKSMSAFF-HARKGRRGLEGVELVPRLEPAILS-VEGRGFNVQIHYVEEPVSDYVQAAVSTVLLI 270 (697)
Q Consensus 193 ~~~~~~ii~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 270 (697)
...+.++++||||+....+...+ +.... .++. .+....++...+..... .......+...
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~~~g~~~~---------------s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~ 574 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALAFYGDLDV---------------TVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQE 574 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHHHTCCSSC---------------EEECCCCSSCCCCEECCCCSST---HHHHHHHHHHH
T ss_pred hCCCCCEEEEeCCCCHHHHHHHHhCCcce---------------eeeeccCCCCcceEEEEeccch---HHHHHHHHHHH
Confidence 33568899999999776665433 32110 0111 11222344444443322 22223333222
Q ss_pred HhcCCCCcEEEEcCCHHHH--------HHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEec
Q 005436 271 HDKEPPGDILVFLTGQDDI--------DATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (697)
Q Consensus 271 ~~~~~~~~iLVF~~~~~~~--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT 342 (697)
. ..+++++|||+..++. +.+++.|.+. ..++..+..+||+|++++|..+++.|++|+.+|||||
T Consensus 575 l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 575 V--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp T--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred H--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 2 3567899999977654 3344433320 1236789999999999999999999999999999999
Q ss_pred CccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccC
Q 005436 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (697)
Q Consensus 343 ~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~ 407 (697)
+++++|+|+|++++||+++. +. .+.+++.||+||+||. .+|.||.+++
T Consensus 647 ~vie~GIDiP~v~~VIi~d~--------~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENP--------ER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSC--------SS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCCccccCCCCCEEEEeCC--------CC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 99999999999999998443 21 2456777999999998 7899999997
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=3.8e-30 Score=308.30 Aligned_cols=305 Identities=16% Similarity=0.167 Sum_probs=208.1
Q ss_pred CCcHHHHHHHHHHHhc----CC--EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh---
Q 005436 49 LPVYKYRTAILYLVET----HA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM--- 119 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~----~~--~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~--- 119 (697)
...+++|.++++.+.+ ++ +++++||||+|||.++...+... ...+.++++++|++.|+.|.... +.+.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~-~~~~~~~~ 679 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDN-FRDRFANW 679 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHH-HHHHSTTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHH-HHHHhhcC
Confidence 3358999988888765 55 89999999999995544333322 22456889999999998765443 44433
Q ss_pred CCcceeEEeeEeecCC-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC
Q 005436 120 GVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (697)
Q Consensus 120 ~~~~~~~~g~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~ 194 (697)
+.+++...|+....+. ....+..+|+|+|++.+. .+..+.++++|||||+|..+. . ....+...+
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~--~----~~~~l~~l~ 749 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGV--R----HKERIKAMR 749 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCH--H----HHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcCh--H----HHHHHHHhc
Confidence 3444444432211110 011225899999998653 334488999999999995332 1 122233345
Q ss_pred CCceEEEecccccHHHHHHHhhcCcCCCCCcccccCCCCCCcEEEe-ccceeeeEEEecCCCcchHHHHHHHHHHHHHhc
Q 005436 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK 273 (697)
Q Consensus 195 ~~~~ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (697)
.+.++++||||+....+...+...... ..+.. +....++..+........ ....+....
T Consensus 750 ~~~~vl~lSATp~p~~l~~~~~~~~~~--------------~~i~~~~~~r~~i~~~~~~~~~~~----i~~~il~~l-- 809 (1151)
T 2eyq_A 750 ANVDILTLTATPIPRTLNMAMSGMRDL--------------SIIATPPARRLAVKTFVREYDSMV----VREAILREI-- 809 (1151)
T ss_dssp TTSEEEEEESSCCCHHHHHHHTTTSEE--------------EECCCCCCBCBCEEEEEEECCHHH----HHHHHHHHH--
T ss_pred CCCCEEEEcCCCChhhHHHHHhcCCCc--------------eEEecCCCCccccEEEEecCCHHH----HHHHHHHHH--
Confidence 678999999999766665554432200 01110 112233443333322211 222222222
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~ 353 (697)
..+++++|||+++++++.+++.|.+.. ++..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~ 882 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 882 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTT
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccC
Confidence 357889999999999999999998874 3678999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 354 v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
+++||..+. . +.+.+++.||+||+||. .+|.||.++++.
T Consensus 883 v~~VIi~~~--------~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 883 ANTIIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEEETTT--------T---------SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcEEEEeCC--------C---------CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999996322 1 23567888999999998 689999998754
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.8e-30 Score=309.00 Aligned_cols=274 Identities=15% Similarity=0.109 Sum_probs=179.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH--HhCCcce
Q 005436 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE--EMGVKVG 124 (697)
Q Consensus 47 ~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~--~~~~~~~ 124 (697)
.....++.|.++++.+.++++++++||||||||......+.. ....+.++++++|+++|+.|.... +.. ..+.+++
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~-~~~~~~~~Lil~PtreLa~Q~~~~-l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALW-LARKGKKSALVFPTVTLVKQTLER-LQKLADEKVKIF 152 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHH-HHTTTCCEEEEESSHHHHHHHHHH-HHTTSCTTSCEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCeEEEEechHHHHHHHHHH-HHHhhCCCCeEE
Confidence 445688999999999999999999999999999532222222 124567899999999999875443 333 2344555
Q ss_pred eEEeeEeecC-----CcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcCh---hHHHH-------HHHH
Q 005436 125 EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST---DILLG-------LLKK 189 (697)
Q Consensus 125 ~~~g~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~---d~l~~-------~l~~ 189 (697)
..+|.....+ .....+.++|+|+||+.|++.+.. ..+.++++|||||||...... |-++. .+..
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 5555322100 011122489999999999876653 236789999999999422111 22222 1222
Q ss_pred HHH-hC-----------CCceEEEecccccHHH-----HHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEec
Q 005436 190 IQR-CR-----------SDLRLIISSATIEAKS-----MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (697)
Q Consensus 190 ~~~-~~-----------~~~~ii~~SAT~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (697)
+.. .. ++.+++++|||+.... +..++.-.. .........+...+.
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------------------~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------------------GRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------------------CBCCCCCCCEEEEEE
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------------------ccCCCCcCCceeEEE
Confidence 222 22 6789999999953322 222222100 000111122333333
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHHhhccCCC
Q 005436 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQEQVFSPT 331 (697)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~f 331 (697)
....... ....+.. .++++||||++++.++.+++.|... ++.+. .+||. |.+ ++.|
T Consensus 294 ~~~k~~~---L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F 350 (1104)
T 4ddu_A 294 SSRSKEK---LVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDF 350 (1104)
T ss_dssp SCCCHHH---HHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHH
T ss_pred ecCHHHH---HHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHH
Confidence 3322222 2222211 2478999999999999999999875 67787 99992 455 9999
Q ss_pred CCCCcEEEEe----cCccccccCCCC-eEEEEecCccc
Q 005436 332 PRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (697)
Q Consensus 332 ~~g~~kilva----T~i~e~Gvdip~-v~~VId~g~~k 364 (697)
++|+.+|||| |+++++|||+|+ |++||++|+++
T Consensus 351 ~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 351 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999 999999999999 99999999877
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=6.4e-31 Score=290.39 Aligned_cols=312 Identities=17% Similarity=0.139 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc-ceeE
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEE 126 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~-~~~~ 126 (697)
.+.++++|.++++.+.+++++++++|||+|||.+....+... +.++++++|++.|+.|... ++.+ ++.. ++..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~-~~~~-~~~~~v~~~ 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKE-RLGI-FGEEYVGEF 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHH-HGGG-GCGGGEEEB
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHH-HHHh-CCCcceEEE
Confidence 457899999999999999999999999999996655555443 4678999999999876544 3444 6666 5544
Q ss_pred EeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 127 ~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
.|. ... ..+|+|+|++.+...+.. ...++++|||||+|.. .+..+ +.+....+..+++++|||+
T Consensus 165 ~g~-------~~~-~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~~-~~~~~-----~~~~~~~~~~~~l~lSATp 228 (472)
T 2fwr_A 165 SGR-------IKE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAESY-----VQIAQMSIAPFRLGLTATF 228 (472)
T ss_dssp SSS-------CBC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGGT-TSTTT-----HHHHHTCCCSEEEEEESCC
T ss_pred CCC-------cCC-cCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcCC-CChHH-----HHHHHhcCCCeEEEEecCc
Confidence 432 112 578999999998765432 1246899999999943 33322 2244445678899999999
Q ss_pred cH-----HHHHHHhhcCcCCCCCccccc--CCCCCCcEEEeccceeee-----------------------EEEec----
Q 005436 207 EA-----KSMSAFFHARKGRRGLEGVEL--VPRLEPAILSVEGRGFNV-----------------------QIHYV---- 252 (697)
Q Consensus 207 ~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v-----------------------~~~~~---- 252 (697)
.. ..+..+++............. ........+.++...... ...+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (472)
T 2fwr_A 229 EREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM 308 (472)
T ss_dssp CCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT
T ss_pred cCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Confidence 41 124444442211111100000 000000001111000000 00000
Q ss_pred -----CCCcchH------------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 005436 253 -----EEPVSDY------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (697)
Q Consensus 253 -----~~~~~~~------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (697)
....... .......+..+.....++++||||++++.++.+++.|. +..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~ 374 (472)
T 2fwr_A 309 ASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAI 374 (472)
T ss_dssp TTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBC
T ss_pred HhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------ccee
Confidence 0000000 00112333344444567899999999999998887762 4468
Q ss_pred cCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccC
Q 005436 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (697)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaG 395 (697)
||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|...|.||+||||
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRIL 436 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSB
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999998554 567788999999999
Q ss_pred CCCCc----EEEEccChhHhhh
Q 005436 396 RVRPG----KCYRLYTEEYFVK 413 (697)
Q Consensus 396 R~~~G----~~~~l~~~~~~~~ 413 (697)
|.++| .+|.++++...+.
T Consensus 437 R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 437 RPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCCceEEEEEEEeCCCchH
Confidence 99766 5777777654433
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.8e-30 Score=309.51 Aligned_cols=274 Identities=17% Similarity=0.119 Sum_probs=173.1
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH-HHHHHHHHhccccCCCeEEEEECccHHHHHHHH--HHHHHHhCC-
Q 005436 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA--SRVAEEMGV- 121 (697)
Q Consensus 46 r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT-~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~--~~~~~~~~~- 121 (697)
...++. .+|.+++..+.++++++++|||||||| +++|.+... ...+.++++++|+++|+.|... +.+....+.
T Consensus 53 ~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~--~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL--ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp TTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHH--HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred hcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHH--hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 334445 999999999999999999999999999 444443322 2356789999999999988443 334444455
Q ss_pred ---cceeEEeeEeecCC----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH--
Q 005436 122 ---KVGEEVGYTIRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-- 192 (697)
Q Consensus 122 ---~~~~~~g~~~~~~~----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-- 192 (697)
.++..+|.....+. .... .++|+|+||+.|++.+.. +.++++|||||||+..-....+..+++.+..
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~~l~-~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~ 205 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQNLR-NFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHY 205 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHHSGG-GCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEE
T ss_pred ccceEEEEeCCCChhhHHHHHhhcc-CCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcch
Confidence 56666664322110 1112 388999999999987654 7789999999999532222233333333211
Q ss_pred ------hCCCceEEEecccccHH-HHH-HHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCcchHHHHHH
Q 005436 193 ------CRSDLRLIISSATIEAK-SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (697)
Q Consensus 193 ------~~~~~~ii~~SAT~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (697)
...+.+++++|||++.. .+. .++..... ..... ... ....+...+......+.+
T Consensus 206 ~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~---------~~~----~~~~i~~~~~~~~k~~~L---- 267 (1054)
T 1gku_B 206 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGS---------SRI----TVRNVEDVAVNDESISTL---- 267 (1054)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSC---------CEE----CCCCEEEEEESCCCTTTT----
T ss_pred hhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccC---------ccc----CcCCceEEEechhHHHHH----
Confidence 12456789999998432 122 22222110 00000 000 011233333332222221
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEe---
Q 005436 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS--- 341 (697)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilva--- 341 (697)
..+... .++++||||+++++++.+++.|.+. +.+..+||++ .++++.|++|+.+||||
T Consensus 268 ---~~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas 328 (1054)
T 1gku_B 268 ---SSILEK-LGTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAH 328 (1054)
T ss_dssp ---HHHHTT-SCSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC
T ss_pred ---HHHHhh-cCCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecC
Confidence 122222 2578999999999999999887431 6799999998 36677899999999999
Q ss_pred -cCccccccCCCCe-EEEEecCcc
Q 005436 342 -TNIAETSLTLEGI-VYVVDSGFS 363 (697)
Q Consensus 342 -T~i~e~Gvdip~v-~~VId~g~~ 363 (697)
|+++++|||+|+| ++||++|..
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCC
T ss_pred CCCeeEeccccCCcccEEEEeCCC
Confidence 9999999999995 999999987
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=1.5e-28 Score=275.52 Aligned_cols=323 Identities=19% Similarity=0.212 Sum_probs=210.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcc
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~ 123 (697)
.+-.++.|...+..+.+|+ |..++||+||| +.+|.++... .+..++|++|++.||.| ++...+...+|+++
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4466788888888888888 99999999999 6677664322 35578999999999988 45667888889998
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcCh---------------
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST--------------- 180 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~--------------- 180 (697)
+..+|........... .++|+|+||+.| +..+... ..++.+.++||||||....+.
T Consensus 156 ~~i~gg~~~~~r~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EECCTTSCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEeCCCCHHHHHHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 8777743221111222 579999999999 4444332 237899999999999432232
Q ss_pred hHHHHHHHHHHH-hC---------CCceEE-----------------EecccccH--HHHH-----H-HhhcCc--C---
Q 005436 181 DILLGLLKKIQR-CR---------SDLRLI-----------------ISSATIEA--KSMS-----A-FFHARK--G--- 220 (697)
Q Consensus 181 d~l~~~l~~~~~-~~---------~~~~ii-----------------~~SAT~~~--~~~~-----~-~~~~~~--~--- 220 (697)
++... +..+.. .. .+.++. ++|||.+. ..+. . +|.... .
T Consensus 235 ~~~~~-i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 235 KLYVQ-ANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp HHHHH-HHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hHHHH-HHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 23333 333333 32 234555 78998631 2221 1 111000 0
Q ss_pred -----------C----CCCc-----------ccccCCC-CC-----------------------------------CcEE
Q 005436 221 -----------R----RGLE-----------GVELVPR-LE-----------------------------------PAIL 238 (697)
Q Consensus 221 -----------~----~~~~-----------~~~~~~~-~~-----------------------------------~~~~ 238 (697)
+ ..|. .+..... .. ..++
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv 393 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVV 393 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEE
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceE
Confidence 0 0000 0000000 00 0011
Q ss_pred EeccceeeeE-----EEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 005436 239 SVEGRGFNVQ-----IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (697)
Q Consensus 239 ~~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (697)
.++....... ..|. ...+........+...+. .+.++||||+|++.++.+++.|... ++.+.
T Consensus 394 ~IPtn~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~~ 460 (844)
T 1tf5_A 394 TIPTNRPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPHQ 460 (844)
T ss_dssp ECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCCE
T ss_pred EecCCCCcccccCCcEEEe--CHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEE
Confidence 2221110000 1121 112222333333333332 3567999999999999999999765 78889
Q ss_pred EecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCC--------CeEEEEecCcccceeecCCCCcccccccccCHH
Q 005436 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (697)
Q Consensus 314 ~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip--------~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~ 385 (697)
.+||++...++..+.+.++.| .|+||||+|++|+||+ ++.+||++++ |.|..
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r 520 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRR 520 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHH
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHH
Confidence 999999999988787777766 5999999999999999 8999999877 88999
Q ss_pred hHHHhhcccCCC-CCcEEEEccChhH
Q 005436 386 SARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 386 ~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
.|.||+||+||. .+|.++.+++.++
T Consensus 521 ~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 521 IDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999 8999999988654
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=6.4e-30 Score=285.23 Aligned_cols=313 Identities=12% Similarity=0.083 Sum_probs=193.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC---Cccee
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGE 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~---~~~~~ 125 (697)
..++++|.++++.+.+++++++++|||+|||.+....+.......++++++++|++.|+.|...+ +.+... ..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~-~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADD-FVDYRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHH-HHHTTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHH-HHHhhcCCccceEE
Confidence 36799999999999888999999999999996654444432222345899999999998876544 433321 22222
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~-~~~~~~~ii~~SA 204 (697)
..|.....+. . ....+|+|+|++.|.+. ....+.++++|||||+|.... .. ...+. ...+..++++|||
T Consensus 191 ~~~~~~~~~~-~-~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~~--~~----~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK-Y-KNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLATG--KS----ISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG-G-CTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCCH--HH----HHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc-c-ccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCCc--cc----HHHHHHhcccCcEEEEEEe
Confidence 2222111111 1 13689999999976543 112377899999999994332 11 22332 3346778999999
Q ss_pred cccHH-----HHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCCCc-----chHHH-------------
Q 005436 205 TIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV-----SDYVQ------------- 261 (697)
Q Consensus 205 T~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~------------- 261 (697)
|++.. .+..+++............... ...+-...++......... ..+..
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDG------QVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCC------cCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99332 1333444321111100000000 0000000111111100000 11111
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEe
Q 005436 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (697)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilva 341 (697)
.....+.... ...+..++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|.+|+.+||||
T Consensus 335 ~l~~~l~~~~-~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 335 WIAKLAIKLA-QKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHH-TTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHH-hcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1112222222 223445667766 88888888888654 347899999999999999999999999999999
Q ss_pred c-CccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcE-EEEccC
Q 005436 342 T-NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK-CYRLYT 407 (697)
Q Consensus 342 T-~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~-~~~l~~ 407 (697)
| +++++|+|+|++++||..+. +.|.+++.||+||+||.++|. ++.+|+
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 99999999999999998655 556778889999999995543 555555
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.6e-27 Score=266.19 Aligned_cols=322 Identities=18% Similarity=0.184 Sum_probs=195.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcce
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~~ 124 (697)
+-.++.|...+..+.+++ |..++||+||| +.+|.+.... .+.++++++|+|.||.| .....+...+|++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 456777877777888887 99999999999 5666654322 34568999999999988 556678888899988
Q ss_pred eEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcCh---------------h
Q 005436 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------D 181 (697)
Q Consensus 125 ~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~---------------d 181 (697)
..+|........... .++|+|+||+.| ++.+..+ ..++++.++||||||....+. +
T Consensus 148 ~i~GG~~~~~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~ 226 (853)
T 2fsf_A 148 INLPGMPAPAKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE 226 (853)
T ss_dssp ECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchh
Confidence 777743221111122 579999999999 6666543 237899999999999433221 1
Q ss_pred HH---HHHHHHHHHh-----------------CCCceEE------------------------EecccccH--HHHH---
Q 005436 182 IL---LGLLKKIQRC-----------------RSDLRLI------------------------ISSATIEA--KSMS--- 212 (697)
Q Consensus 182 ~l---~~~l~~~~~~-----------------~~~~~ii------------------------~~SAT~~~--~~~~--- 212 (697)
+. ..+++.+... .++.++. ++|||... ..+.
T Consensus 227 ~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al 306 (853)
T 2fsf_A 227 MYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAAL 306 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHH
Confidence 11 1222222110 0012222 77888521 1110
Q ss_pred ---HHhhcCc--------------------CCCCC-----c------ccccCCC-C------------------------
Q 005436 213 ---AFFHARK--------------------GRRGL-----E------GVELVPR-L------------------------ 233 (697)
Q Consensus 213 ---~~~~~~~--------------------~~~~~-----~------~~~~~~~-~------------------------ 233 (697)
.+|.... ....| . .+...+. .
T Consensus 307 ~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa 386 (853)
T 2fsf_A 307 RAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTA 386 (853)
T ss_dssp --------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTT
T ss_pred HHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCc
Confidence 0110000 00000 0 0000000 0
Q ss_pred -----------CCcEEEeccceeeeE------EEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHH
Q 005436 234 -----------EPAILSVEGRGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLL 296 (697)
Q Consensus 234 -----------~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L 296 (697)
...++.+|.. .|+. ..|. ...+........+...+ ..+.++||||+|++.++.+++.|
T Consensus 387 ~te~~ef~~iY~l~vv~IPtn-~p~~R~d~~d~v~~--~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 387 DTEAFEFSSIYKLDTVVVPTN-RPMIRKDLPDLVYM--TEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp CCCHHHHHHHHCCEEEECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCcEEEcCCC-CCceeecCCcEEEe--CHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHH
Confidence 0011222211 1111 1111 11222222222232222 34678999999999999999999
Q ss_pred HHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCC-----------------------
Q 005436 297 TEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG----------------------- 353 (697)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~----------------------- 353 (697)
... ++....+||.+...++..+.++++.| .|+||||+|++|+||+.
T Consensus 462 ~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~ 530 (853)
T 2fsf_A 462 TKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIK 530 (853)
T ss_dssp HHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHH
T ss_pred HHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHH
Confidence 876 78889999999999998899999988 69999999999999997
Q ss_pred ---------e-----EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 354 ---------I-----VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 354 ---------v-----~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
| .+||++.+ |.|...|.||+||+||. .||.++.+++.++
T Consensus 531 ~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 531 ADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 3 69999877 88999999999999999 8999998888554
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=6.4e-28 Score=273.58 Aligned_cols=320 Identities=14% Similarity=0.082 Sum_probs=177.7
Q ss_pred CCcHHHHHHHHHHHhc-----CCEEEEEcCCCChHHHHHHHHHHhc---ccc-----CCCeEEEEECccHHHHHHHHHHH
Q 005436 49 LPVYKYRTAILYLVET-----HATTIIVGETGSGKTTQIPQYLKEA---GWA-----DGGRVIACTQPRRLAVQAVASRV 115 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~-----~~~~ii~apTGsGKT~~lp~~l~~~---~~~-----~~~~~Ivv~p~r~l~~~~~~~~~ 115 (697)
..++.+|.++++.+.+ ++++++++|||||||.++..++... .+. .+.++++++|++.|+.|...+.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3578899888887754 5779999999999995544333322 111 35678999999999887652222
Q ss_pred HHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhc-----CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHH
Q 005436 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (697)
Q Consensus 116 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~ 190 (697)
. .++..++... ...... ..+|+|+|++.|...... ......+++||||||| +....+ ...++.+
T Consensus 257 ~-~~~~~~~~~~------~~~~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~i 325 (590)
T 3h1t_A 257 T-PFGDARHKIE------GGKVVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREI 325 (590)
T ss_dssp T-TTCSSEEECC------C--CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH
T ss_pred H-hcchhhhhhh------ccCCCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHH
Confidence 2 2333222111 112223 689999999999876532 1225678999999999 443321 1233444
Q ss_pred HHhCCCceEEEeccccc---HHHHHHHhhcCcCCCCCcc-cccCCCCCCcEEEeccce--eeeE---------------E
Q 005436 191 QRCRSDLRLIISSATIE---AKSMSAFFHARKGRRGLEG-VELVPRLEPAILSVEGRG--FNVQ---------------I 249 (697)
Q Consensus 191 ~~~~~~~~ii~~SAT~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~v~---------------~ 249 (697)
....++.++++||||+. ......+|+.......... .......+..+..+.... .... .
T Consensus 326 l~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 326 LEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred HHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 44456678999999983 3445667754221111000 000000000011111000 0000 0
Q ss_pred EecCCCcc------hHHHHHHHHHHHHH-hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHH
Q 005436 250 HYVEEPVS------DYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA 322 (697)
Q Consensus 250 ~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 322 (697)
.|...... .........+.... .....+++||||+++++++.+++.|.+........ ....+..+||.++.
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~~- 483 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEGK- 483 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTHH-
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCChH-
Confidence 00000000 00111122222222 22456889999999999999999998764322111 12236778999764
Q ss_pred HHhhccCCCCCCCcE---EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCC
Q 005436 323 EQEQVFSPTPRGKRK---VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (697)
Q Consensus 323 ~r~~v~~~f~~g~~k---ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~ 399 (697)
+|+++++.|++|+.+ |+|||+++++|+|+|++++||.++. +.|...|.||+||+||..+
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 799999999988766 8899999999999999999998554 6688899999999999854
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=9.4e-27 Score=260.23 Aligned_cols=323 Identities=18% Similarity=0.161 Sum_probs=212.3
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcc
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~ 123 (697)
.+-.+..|...+..+.+|+ |..++||+||| +.+|.++... .+..+++++|++.||.| ++...+...+|+++
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4566777887777888887 99999999999 5666655432 34578999999999988 55667888899998
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcC---------------h
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIS---------------T 180 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDE~Her~~~---------------~ 180 (697)
+..+|........... .++|+|+||+.| ++.+..+ ..++.+.++||||||....+ +
T Consensus 184 ~~i~gg~~~~~r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 184 GVILATMTPDERRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEeCCCCHHHHHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 8777743221111222 579999999999 5655443 23788999999999943222 2
Q ss_pred hHHHHHHHHHHHhC---------CCceEE-----------------EecccccH--HHHHH------HhhcCc-------
Q 005436 181 DILLGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMSA------FFHARK------- 219 (697)
Q Consensus 181 d~l~~~l~~~~~~~---------~~~~ii-----------------~~SAT~~~--~~~~~------~~~~~~------- 219 (697)
++...+-+.+.... ++.++. ++|||... ..+.. +|....
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 34444444443443 456677 78999631 22211 121110
Q ss_pred ----C-----C----CCCc-----cc---ccC--CCCC-------------------------------------CcEEE
Q 005436 220 ----G-----R----RGLE-----GV---ELV--PRLE-------------------------------------PAILS 239 (697)
Q Consensus 220 ----~-----~----~~~~-----~~---~~~--~~~~-------------------------------------~~~~~ 239 (697)
+ + ..|. .. +.. .... ..++.
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 0 0 0000 00 000 0000 01122
Q ss_pred eccceeeeE-----EEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 005436 240 VEGRGFNVQ-----IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILP 314 (697)
Q Consensus 240 ~~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~ 314 (697)
+|....... ..|. ...+.....+..+...+. .+.++||||+|++.++.+++.|... ++.+..
T Consensus 423 IPtn~p~~R~d~~d~v~~--t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~v 489 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYK--TEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNV 489 (922)
T ss_dssp CCCSSCCCCEECCCEEES--CHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEE
T ss_pred eCCCCCcccccCCcEEEe--CHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEE
Confidence 222110000 1111 112222233333333332 4567999999999999999999876 788899
Q ss_pred ecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe----------------------------------------
Q 005436 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI---------------------------------------- 354 (697)
Q Consensus 315 lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v---------------------------------------- 354 (697)
+||.+...++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888899887 699999999999999975
Q ss_pred ------------EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 355 ------------VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 355 ------------~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
.+||++.+ |.|...|.||+||+||. .||.+..+++.+
T Consensus 568 ~~~~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp THHHHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHhhhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 69999777 88999999999999999 899998888744
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=221.53 Aligned_cols=178 Identities=35% Similarity=0.562 Sum_probs=151.3
Q ss_pred hhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCC----CeEEEEECccHHHHHHHHHH
Q 005436 39 YASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVASR 114 (697)
Q Consensus 39 ~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~----~~~Ivv~p~r~l~~~~~~~~ 114 (697)
+.++.+.+..+|++.+|++++..+.++++++++||||||||++++.++.+.....+ .+++++.|++.++. +++++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~-q~~~~ 128 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAV-SVAER 128 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHH-HHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHH-HHHHH
Confidence 45567788899999999999999999999999999999999988877765433222 25677777776655 56788
Q ss_pred HHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC
Q 005436 115 VAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (697)
Q Consensus 115 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~ 194 (697)
++..++..++..+||..+++.......++|+|+|||+|++.+.. .+.++++||+||||+++.+.++....++.+....
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 88889988899999988887766544799999999999998876 3889999999999988899999988999988888
Q ss_pred CCceEEEecccccHHHHHHHhhcCc
Q 005436 195 SDLRLIISSATIEAKSMSAFFHARK 219 (697)
Q Consensus 195 ~~~~ii~~SAT~~~~~~~~~~~~~~ 219 (697)
++.++++||||++.+.+++||++.+
T Consensus 207 ~~~~~il~SAT~~~~~~~~~~~~~p 231 (235)
T 3llm_A 207 PEVRIVLMSATIDTSMFCEYFFNCP 231 (235)
T ss_dssp TTSEEEEEECSSCCHHHHHHTTSCC
T ss_pred CCCeEEEEecCCCHHHHHHHcCCCC
Confidence 8999999999998888999998776
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=3.4e-25 Score=262.22 Aligned_cols=331 Identities=16% Similarity=0.149 Sum_probs=199.9
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHHHHHHHHHHHHHHhCCccee
Q 005436 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~ 125 (697)
..++++|.+++..+.. +..++++++||+|||.++..++..... ...+++++++|+ .|+.| +...+.+.++.++..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Q-w~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQ-WLVEMLRRFNLRFAL 229 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHH-HHHHHHHHSCCCCEE
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHH-HHHHHHHHhCCCEEE
Confidence 4588999999987765 458999999999999665444433211 223478999999 77755 444566667777654
Q ss_pred EEeeEee---cCCcCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcCh---hHHHHHHHHHHHhCCCc
Q 005436 126 EVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIST---DILLGLLKKIQRCRSDL 197 (697)
Q Consensus 126 ~~g~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~~---d~l~~~l~~~~~~~~~~ 197 (697)
..|.... ..........+|+|+|++.+.+..... ....++++|||||||...... ......++.+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~ 307 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVP 307 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCS
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCC
Confidence 4432110 111122225789999999886421110 014578999999999443211 112233333322 234
Q ss_pred eEEEecccccH---HH---HHHHhhcCcC-------------------------CCCCcc-----c-ccCC---------
Q 005436 198 RLIISSATIEA---KS---MSAFFHARKG-------------------------RRGLEG-----V-ELVP--------- 231 (697)
Q Consensus 198 ~ii~~SAT~~~---~~---~~~~~~~~~~-------------------------~~~~~~-----~-~~~~--------- 231 (697)
++++||||+-. .. +..++..... ...... . ....
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 68999999821 11 1111110000 000000 0 0000
Q ss_pred CC-----------------------CCcEEEeccc----eeee---EEEecCCCc-------------------------
Q 005436 232 RL-----------------------EPAILSVEGR----GFNV---QIHYVEEPV------------------------- 256 (697)
Q Consensus 232 ~~-----------------------~~~~~~~~~~----~~~v---~~~~~~~~~------------------------- 256 (697)
.. ...++....+ .++. .......+.
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00 0000000000 0100 000000000
Q ss_pred ----------------chHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 005436 257 ----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (697)
Q Consensus 257 ----------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 320 (697)
..........+..+.....++++||||+++..++.+++.|... .++.+..+||+|+
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMS 539 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSC
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCC
Confidence 0000112333444444467889999999999999999999753 2788999999999
Q ss_pred HHHHhhccCCCCCCC--cEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-
Q 005436 321 RAEQEQVFSPTPRGK--RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV- 397 (697)
Q Consensus 321 ~~~r~~v~~~f~~g~--~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~- 397 (697)
..+|.++++.|++|+ .+|||||+++++|+|+|++++||+++. |.+...|.||+||+||.
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCC
Confidence 999999999999998 999999999999999999999998665 67888999999999998
Q ss_pred CCc--EEEEccChh
Q 005436 398 RPG--KCYRLYTEE 409 (697)
Q Consensus 398 ~~G--~~~~l~~~~ 409 (697)
+.| .+|.++.+.
T Consensus 602 q~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 602 QAHDIQIHVPYLEK 615 (968)
T ss_dssp SCSCCEEEEEEETT
T ss_pred CCceEEEEEecCCC
Confidence 445 455555543
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=1.2e-25 Score=219.48 Aligned_cols=171 Identities=21% Similarity=0.286 Sum_probs=146.3
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcc
Q 005436 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (697)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~ 345 (697)
.+..+.....++++||||+++.+++.+++.|... ++.+..+||+|++++|..+++.|++|+++|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3344444456789999999999999999999876 7889999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH--------------
Q 005436 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY-------------- 410 (697)
Q Consensus 346 e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~-------------- 410 (697)
++|+|+|++++||++|+ |.|..+|.||+|||||. .+|.|+.++++.+
T Consensus 92 ~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999887 88999999999999999 6899999999776
Q ss_pred hhhhCCCCCCCcccccchhHHHHHHHHcCCCCccCC-----CCCCCCCHHHHHHHHHHH
Q 005436 411 FVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVL 464 (697)
Q Consensus 411 ~~~~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~~~~a~~~L 464 (697)
+.. +.....+|+.+..+..+++.++.++.++...| +++++|+.+.+..|+..|
T Consensus 154 ~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Cee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 333 55566788888899999999998876555445 567888999999998766
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=6.5e-25 Score=224.32 Aligned_cols=173 Identities=20% Similarity=0.269 Sum_probs=146.7
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccc
Q 005436 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (697)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~G 348 (697)
.+.....++++||||+++++++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 21 ~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 21 DLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp HHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 3333335789999999999999999999764 7889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH--------------hhh
Q 005436 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY--------------FVK 413 (697)
Q Consensus 349 vdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~--------------~~~ 413 (697)
+|+|++++||++|+ |.|..+|.||+|||||. .+|.||.++++.+ +..
T Consensus 92 idi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~ 153 (300)
T 3i32_A 92 LDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 153 (300)
T ss_dssp TTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEE
T ss_pred ccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceE
Confidence 99999999999887 77889999999999999 6999999999765 333
Q ss_pred hCCCCCCCcccccchhHHHHHHHHcCCCCccCC-----CCCCCCCHHHHHHHHHHHHHcCC
Q 005436 414 EIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVLYSLGV 469 (697)
Q Consensus 414 ~~~~~~~pei~~~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~~~~a~~~L~~lga 469 (697)
+.....+||.+..+..++++++.++.++...| +++++|+.+.+..|+..|.....
T Consensus 154 -~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 154 -VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred -eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 55667789999999999999988776555555 56788999999999999977655
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=1.5e-23 Score=233.00 Aligned_cols=325 Identities=15% Similarity=0.115 Sum_probs=186.8
Q ss_pred CCcHHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHHHhcc-ccCCCeEEEEECccHHHHHHHHHHHHHHh-CCc
Q 005436 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEM-GVK 122 (697)
Q Consensus 49 lPi~~~q~~i~~~l----~~~~~~ii~apTGsGKT~~lp~~l~~~~-~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~-~~~ 122 (697)
..++++|.+.++.+ ..+...++..+||+|||.++..++.... .....+++|++|+ .++.| +.+.+.+.. +.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~q-w~~e~~~~~~~~~ 113 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKN-WEEELSKFAPHLR 113 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHH-HHHHHHHHCTTSC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHH-HHHHHHHHCCCce
Confidence 35889999987766 4577899999999999965444433321 1234578889985 56554 455555544 233
Q ss_pred ceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEe
Q 005436 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (697)
Q Consensus 123 ~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~ 202 (697)
+....|.. ...... ..+|+++|++.+.+... .....+++||+||||.......... +.+... +..+.+++
T Consensus 114 v~~~~g~~---~~~~~~-~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~---~~l~~l-~~~~~l~L 183 (500)
T 1z63_A 114 FAVFHEDR---SKIKLE-DYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIF---KAVKEL-KSKYRIAL 183 (500)
T ss_dssp EEECSSST---TSCCGG-GSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHH---HHHHTS-CEEEEEEE
T ss_pred EEEEecCc---hhcccc-CCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHH---HHHHhh-ccCcEEEE
Confidence 33222211 111112 57899999999875432 1134689999999994322211111 222222 34568999
Q ss_pred cccc---cHHHHHH---HhhcCcCCC---------------CCcc-cccCCCCCCcEEE-----------eccceeeeEE
Q 005436 203 SATI---EAKSMSA---FFHARKGRR---------------GLEG-VELVPRLEPAILS-----------VEGRGFNVQI 249 (697)
Q Consensus 203 SAT~---~~~~~~~---~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~-----------~~~~~~~v~~ 249 (697)
|||+ +..++.. ++....... .... ........+..+. .+... ...
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~--~~~ 261 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKI--ETN 261 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEE--EEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCe--EEE
Confidence 9999 2222221 111100000 0000 0000000000000 00000 001
Q ss_pred EecCCCcc---hHH------------------------------------------------HHHHHHHHHHHh--cCCC
Q 005436 250 HYVEEPVS---DYV------------------------------------------------QAAVSTVLLIHD--KEPP 276 (697)
Q Consensus 250 ~~~~~~~~---~~~------------------------------------------------~~~~~~~~~~~~--~~~~ 276 (697)
.+.+.... .|. ......+..+.. ...+
T Consensus 262 v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~ 341 (500)
T 1z63_A 262 VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEG 341 (500)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccC
Confidence 11110000 000 000011111111 1356
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC-CcE-EEEecCccccccCCCCe
Q 005436 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLEGI 354 (697)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~k-ilvaT~i~e~Gvdip~v 354 (697)
.++|||+.....++.+++.|.... +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred CcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 789999999999999999997753 56788899999999999999999887 454 89999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
++||.++. |.+...+.||+||++|. ++..+|+++.+...+.
T Consensus 414 ~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 414 NRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp SEEEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 99998554 55666777999999998 3456788888665443
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=1.1e-21 Score=214.81 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
....+..+...+. .+.++||||+|++.++.+++.|.+. ++....+||+....++..+...++.| .|+
T Consensus 460 ~~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~Vt 526 (822)
T 3jux_A 460 YEKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVT 526 (822)
T ss_dssp HHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEE
T ss_pred HHHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEE
Confidence 3344444444332 3567999999999999999999765 78889999997776766666666655 599
Q ss_pred EecCccccccCCC--------CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhH
Q 005436 340 ISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (697)
Q Consensus 340 vaT~i~e~Gvdip--------~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~ 410 (697)
||||+|++|+||+ +..+||++.+ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999998 6779999877 88999999999999999 8999999988654
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=1.8e-22 Score=236.85 Aligned_cols=320 Identities=13% Similarity=0.054 Sum_probs=188.9
Q ss_pred CcHHHHHHHHHHHhc--------------CCEEEEEcCCCChHHHHHHHHHHhc-cccCCCeEEEEECccHHHHHHHHHH
Q 005436 50 PVYKYRTAILYLVET--------------HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASR 114 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~--------------~~~~ii~apTGsGKT~~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~~~~~~ 114 (697)
..+.+|.++++.+.. ++..+++++||||||..+..++... ......++|+++|++.|+.|....
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~- 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE- 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH-
Confidence 466788877777643 3678999999999994432222211 111235799999999998875433
Q ss_pred HHHHhCCcceeEEeeEee-cCCcCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcChhHHHHHHHHH
Q 005436 115 VAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (697)
Q Consensus 115 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~l~~~l~~~ 190 (697)
+.......+.. +.... ..........+|+|+|++.|...+.... .+..+.+||+|||| |+.... ..+.+
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~----~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGE----AQKNL 422 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHH----HHHHH
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchH----HHHHH
Confidence 32222111110 11000 0001111268999999999998765432 35678999999999 654333 23445
Q ss_pred HHhCCCceEEEecccccH-------HHHHHHhhcCcCCCCCcccccCCCCCCcEEEeccceeeeEEEecCC---------
Q 005436 191 QRCRSDLRLIISSATIEA-------KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE--------- 254 (697)
Q Consensus 191 ~~~~~~~~ii~~SAT~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------- 254 (697)
....++.+++++|||+.. .....+|+............ -.|...|+.+.|...
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI-----------~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAI-----------RDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHH-----------HHTSSCCEEEEECCCCGGGHHHHT
T ss_pred HHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHH-----------hCCCcCCeEEEEEeccchhhhccc
Confidence 555678899999999932 24556676421110000000 001111222222110
Q ss_pred ----------------CcchHHHHHHHHHHHHH-hc-------CCCCcEEEEcCCHHHHHHHHHHHHHHhhhc---cCCC
Q 005436 255 ----------------PVSDYVQAAVSTVLLIH-DK-------EPPGDILVFLTGQDDIDATIQLLTEEARTS---KKNS 307 (697)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~~~-~~-------~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~---~~~~ 307 (697)
............+.... .. ..+++.+|||+++.++..+++.|.+..... ....
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 01111222222222211 11 134579999999999999999998765321 0111
Q ss_pred CCeEE-EEecCC----------C----------CHH-----------------------------HHhhccCCCCCCCcE
Q 005436 308 SGLII-LPLYSG----------L----------SRA-----------------------------EQEQVFSPTPRGKRK 337 (697)
Q Consensus 308 ~~~~v-~~lh~~----------l----------~~~-----------------------------~r~~v~~~f~~g~~k 337 (697)
.+..+ ..+||+ + ++. +|..+.+.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 22334 445542 2 221 367788899999999
Q ss_pred EEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCC-----cEEEEccC
Q 005436 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP-----GKCYRLYT 407 (697)
Q Consensus 338 ilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~-----G~~~~l~~ 407 (697)
|||+|+++.+|+|+|.+.+ +..+. |.+...++||+||+||..+ |.++.+..
T Consensus 652 ILIvvd~lltGfDiP~l~t-lylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTLNT-LFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTEEE-EEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccccE-EEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999955 43222 6677889999999999843 66777665
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=1.2e-19 Score=206.46 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=98.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc---EEEEecCccccccCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLTL 351 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~---kilvaT~i~e~Gvdi 351 (697)
.+.++|||+.....++.+.+.|... ++.+..+||+++.++|.++++.|++|.. .+|++|.++++|+|+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 5678999999999999999998776 7788999999999999999999998754 589999999999999
Q ss_pred CCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 352 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
+++++||.++. |-+.+.+.|++||++|. ++..+|+++++...+.
T Consensus 486 ~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 486 IGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp TTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred ccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 99999999665 77889999999999998 3457888888765544
No 62
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1e-20 Score=220.77 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=98.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCc---EEEEecCccccccC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~---kilvaT~i~e~Gvd 350 (697)
..+.++|||+.....+..+.+.|... ++.+..+||+++..+|.++++.|+++.. .+|++|.++++|+|
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 35678999999999999999999776 7888999999999999999999998543 59999999999999
Q ss_pred CCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 351 ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
++++++||.++. +-+.+.+.||.||++|. ++..+|+|+++...+.
T Consensus 641 L~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 641 LMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999998555 56778888999999997 5678999998876654
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.82 E-value=1.2e-19 Score=178.93 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=120.2
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc--cccCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~--~~~~~~~~Ivv~p~r 104 (697)
.+|.+++++......+.+. .--..+++|.+++..+.+++++++++|||||||......+... ....+.++++++|++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 4577788877766666543 3345789999999999999999999999999995433333322 222345789999999
Q ss_pred HHHHHHHHH--HHHHHhCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChh
Q 005436 105 RLAVQAVAS--RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (697)
Q Consensus 105 ~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d 181 (697)
+|+.|.... .+....+..++...|.....+........+|+|+||+.|.+.+..... +.++++||+||||. ..+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~ 171 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSG 171 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH-Hhhhh
Confidence 998874332 222334566666666443322222222589999999999988876554 88999999999993 33333
Q ss_pred HHHHHHHHHHHhCCCceEEEecccccH
Q 005436 182 ILLGLLKKIQRCRSDLRLIISSATIEA 208 (697)
Q Consensus 182 ~l~~~l~~~~~~~~~~~ii~~SAT~~~ 208 (697)
+...+.+.+....++.++++||||++.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 333333334445678899999999955
No 64
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.81 E-value=6.8e-20 Score=171.04 Aligned_cols=112 Identities=22% Similarity=0.401 Sum_probs=103.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCC
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~ 353 (697)
..++++||||+++.+++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~ 103 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIEN 103 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhc
Confidence 45678999999999999999999775 788999999999999999999999999999999999999999999
Q ss_pred eEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 354 v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
+++||+++. |.+..+|.||+||+||. ++|.|+.++++.+..
T Consensus 104 ~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 104 ISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp CSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred CCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 999999776 78999999999999999 789999999976543
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=173.47 Aligned_cols=142 Identities=16% Similarity=0.241 Sum_probs=111.0
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 005436 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (697)
+..+|......+ .....+..+......+++||||+++..++.+++.|... ++.+..+||+|++.+|..
T Consensus 8 i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 8 IRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp EEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHHH
T ss_pred ceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 444554433322 23444555555556789999999999999999999764 778999999999999999
Q ss_pred ccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEc
Q 005436 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l 405 (697)
+++.|++|+.+|||||+++++|+|+|++++||+++.. ... ....+..+|.||+||+||. .+|.|+.+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p--------~~~----~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP--------VKQ----GEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCC--------C------CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCC--------CCc----cccCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999997651 000 0027899999999999998 78999999
Q ss_pred cChhHhh
Q 005436 406 YTEEYFV 412 (697)
Q Consensus 406 ~~~~~~~ 412 (697)
+++.+..
T Consensus 144 ~~~~~~~ 150 (175)
T 2rb4_A 144 IEVDELP 150 (175)
T ss_dssp ECGGGHH
T ss_pred EccchHH
Confidence 9976543
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=1.1e-19 Score=171.05 Aligned_cols=132 Identities=18% Similarity=0.296 Sum_probs=111.1
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 005436 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (697)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (697)
+..+|......+.. ..+..+.....++++||||+++..++.+++.|... ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~K~----~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKN----RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHH----HHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHH----HHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 34444444433332 33334444456788999999999999999999775 778999999999999999
Q ss_pred ccCCCCCCCcEEEEecCccccccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEc
Q 005436 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (697)
Q Consensus 327 v~~~f~~g~~kilvaT~i~e~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l 405 (697)
+++.|++|+.+|||||+++++|+|+|++++||++++ |.|..+|.||+||+||. ++|.|+.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999776 78899999999999999 78999999
Q ss_pred cChh
Q 005436 406 YTEE 409 (697)
Q Consensus 406 ~~~~ 409 (697)
+++.
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9864
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=7e-20 Score=171.36 Aligned_cols=117 Identities=20% Similarity=0.393 Sum_probs=100.8
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcccc
Q 005436 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (697)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~ 347 (697)
..+.....++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 22 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 22 TDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 33333446788999999999999999999764 678999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHh
Q 005436 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (697)
Q Consensus 348 Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~ 411 (697)
|+|+|++++||+++. |.|..+|.||+||+||. .+|.|+.++++.+.
T Consensus 93 G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 93 GIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp TCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 999999999999766 67788888999999999 78999999986654
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=5.9e-19 Score=171.62 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=118.2
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhccccCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~--lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+|.+++++......+.+. .--..+++|.++++.+.+++++++++|||||||.. +|.+........+.++|+++|+++
T Consensus 4 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEM-GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SGGGSCCCHHHHHHHHTT-TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred ChhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 466777777666555542 22357899999999999999999999999999943 343322222223457899999999
Q ss_pred HHHHHHHHHHHHHh----CCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 106 LAVQAVASRVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 106 l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
|+.|... .+.... +..++...|.....+. .......+|+|+||+.+.+.+..+.. +.++++||+||||. ..+
T Consensus 83 L~~q~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~ 160 (206)
T 1vec_A 83 LALQVSQ-ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLS 160 (206)
T ss_dssp HHHHHHH-HHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTS
T ss_pred HHHHHHH-HHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHh
Confidence 9886433 333322 4444444442211111 11112678999999999988876654 88999999999994 333
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
.++...+.+.+....++.++++||||++.+
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 190 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFPLS 190 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCHH
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCCHH
Confidence 344333333333345588999999999543
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.78 E-value=9.6e-19 Score=171.88 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=118.1
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc--ccCCCeEEEEECccH
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRR 105 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~--~~~~~~~Ivv~p~r~ 105 (697)
+|.+++++......+.+. .-...+++|.++++.+.+++++++++|||||||......+.... ...+.++++++|+++
T Consensus 5 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKTL-RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CGGGSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 467777777766666543 33457899999999999999999999999999954333333221 123457899999999
Q ss_pred HHHHHHHH--HHHHHh----CCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 005436 106 LAVQAVAS--RVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (697)
Q Consensus 106 l~~~~~~~--~~~~~~----~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (697)
|+.|.... .+.... +..+....|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||. .
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~ 162 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-M 162 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-H
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-H
Confidence 99875433 222222 3444444443221111 11112678999999999988876554 78899999999994 2
Q ss_pred cChhHHHHHHHHHHHhCCCceEEEecccccH
Q 005436 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (697)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~ 208 (697)
.+..+...+.+.+....++.+++++|||++.
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 2222333333333334567899999999954
No 70
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=170.51 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=88.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
+++++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~ 115 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 115 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSB
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccC
Confidence 5788999999999999999999764 7889999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
++||+++. |.|..+|.||+||+||. .+|.|+.++++.+..
T Consensus 116 ~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 116 KHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp SEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred CEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 99999766 77899999999999999 789999999976543
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=1.1e-18 Score=173.65 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=117.7
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc--cCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~--~~~~~~Ivv~p~r 104 (697)
.+|.+++++......+.+.. --..+++|.+++..+.+++++++++|||||||......+..... ..+.++++++|++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g-~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYG-FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHT-CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 45778888777766665432 22378899999999999999999999999999554433333221 2345789999999
Q ss_pred HHHHHHHHH--HHHHHhCCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 105 RLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 105 ~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
+|+.|.... .+....+..+...+|....... .......+|+|+||+.|.+.+..+.. +.++++||+||||. ..+
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~ 187 (237)
T 3bor_A 109 ELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLS 187 (237)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHH
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhc
Confidence 998874332 2222234555544443221111 11121479999999999998876554 78899999999993 222
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
..+...+...+....++.+++++|||++.+
T Consensus 188 ~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~ 217 (237)
T 3bor_A 188 RGFKDQIYEIFQKLNTSIQVVLLSATMPTD 217 (237)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCHH
T ss_pred cCcHHHHHHHHHhCCCCCeEEEEEEecCHH
Confidence 223333333334456788999999999543
No 72
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=5.4e-19 Score=200.85 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=101.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.++++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|+.|+.+|+|||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 4678999999999999999999875 6788999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~ 409 (697)
++||+++..+. ..|.|..+|+||+|||||.++|.|+.++++.
T Consensus 509 ~lVI~~d~d~~-------------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 509 SLVAILDADKE-------------GFLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEEEETTTTSC-------------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CEEEEeCCccc-------------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 99999664221 1167889999999999999999999999764
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=175.38 Aligned_cols=180 Identities=20% Similarity=0.143 Sum_probs=119.8
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc------ccCCCeEEEE
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG------WADGGRVIAC 100 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~------~~~~~~~Ivv 100 (697)
.+|.+++++......+.+ ..--..+++|.+++..+.+++++++++|||||||......+.... ...+.+++++
T Consensus 25 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp SBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 467888888877665554 344567899999999999999999999999999954332222211 1235678999
Q ss_pred ECccHHHHHHHHHHHHHH---hCCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCc
Q 005436 101 TQPRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHE 175 (697)
Q Consensus 101 ~p~r~l~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDE~He 175 (697)
+|+++|+.|.... +... .+..++..+|..............+|+|+||+.|.+.+... ..+.++++||+||||
T Consensus 104 ~Pt~~L~~q~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah- 181 (236)
T 2pl3_A 104 SPTRELAYQTFEV-LRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD- 181 (236)
T ss_dssp CSSHHHHHHHHHH-HHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-
T ss_pred eCCHHHHHHHHHH-HHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-
Confidence 9999999875433 3332 23555555553222111111126899999999999887654 337899999999999
Q ss_pred CCcChhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
+..+.++...+.+.+....++.++++||||++.+
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 215 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKS 215 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHH
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHH
Confidence 3333333333333333455688999999999543
No 74
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=4.6e-19 Score=201.33 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=101.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccCCCCe
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvdip~v 354 (697)
.++++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 4678999999999999999999875 6788999999999999999999999999999999999999999999
Q ss_pred EEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCCCCcEEEEccChh
Q 005436 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (697)
Q Consensus 355 ~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~~~G~~~~l~~~~ 409 (697)
++||+++..+. + .|.|..+|+||+|||||..+|.|+.++++.
T Consensus 515 ~lVi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 99999664211 1 167889999999999999999999999864
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=177.06 Aligned_cols=180 Identities=21% Similarity=0.173 Sum_probs=124.0
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc--cccCCCeEEEEECcc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQPR 104 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~--~~~~~~~~Ivv~p~r 104 (697)
.+|.+++++......+.+ ..-...+.+|.+++..+.++++++++||||||||......+... ....+.++++++|++
T Consensus 43 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp CCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred CCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 467778887766555544 34446789999999999999999999999999995544333322 112345689999999
Q ss_pred HHHHHHHH--HHHHHHhCCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCc
Q 005436 105 RLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSI 178 (697)
Q Consensus 105 ~l~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~ 178 (697)
+|+.|... +.+....+..++..+|....... .... .++|+|+||+.|.+.+.... .+.++++||+|||| +..
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~ 199 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhh
Confidence 99887443 33444456666665553221111 1122 67999999999999887533 38899999999999 444
Q ss_pred ChhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 179 STDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
+.++...+.+.+....++.++++||||++.+
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 230 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKK 230 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHH
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHH
Confidence 4445444444444455688999999999543
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=7.3e-19 Score=175.53 Aligned_cols=180 Identities=19% Similarity=0.139 Sum_probs=122.1
Q ss_pred cccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcc-----ccCCCeEEE
Q 005436 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIA 99 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~-----~~~~~~~Iv 99 (697)
.+|..++++......+.+. .--..+++|.+++..+.++++++++|||||||| +++|.+..... ...+.++|+
T Consensus 29 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ-NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT-TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 3566677776665555442 222368999999999999999999999999999 44554432211 123567899
Q ss_pred EECccHHHHHHH--HHHHHHHhCCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 005436 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (697)
Q Consensus 100 v~p~r~l~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H 174 (697)
++|+++|+.|.. .+.+....+..+....|....... .... ..+|+|+||+.|.+.+..... +.++++||+||||
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 186 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 186 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH
Confidence 999999998743 344555667776665553221111 1112 478999999999998876654 8999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
+..+.++...+...+....++.++++||||++.+
T Consensus 187 -~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~ 220 (242)
T 3fe2_A 187 -RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 220 (242)
T ss_dssp -HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHH
T ss_pred -HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHH
Confidence 3333334333333344456789999999999543
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=168.25 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=101.6
Q ss_pred HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccc
Q 005436 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (697)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e 346 (697)
+..+... .++++||||+++..++.+++.|... ++.+..+||+|++++|.++++.|++|+.+|||||++++
T Consensus 46 L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 46 LLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp HHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 3333333 3568999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChh
Q 005436 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (697)
Q Consensus 347 ~Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~ 409 (697)
+|+|+|++++||++++ |.+..+|.||+||+||. .+|.|+.++++.
T Consensus 116 ~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred cCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999766 78899999999999999 789999999864
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=1.4e-18 Score=169.17 Aligned_cols=184 Identities=20% Similarity=0.125 Sum_probs=119.4
Q ss_pred cCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc-----cCCCeEEEEECc
Q 005436 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQP 103 (697)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~-----~~~~~~Ivv~p~ 103 (697)
|.+++++......+.+ ..--..+++|.++++.+.+++++++++|||+|||......+..... ..+.++++++|+
T Consensus 3 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 5667777766555544 3334678999999999999999999999999999554433333221 235678999999
Q ss_pred cHHHHHHHHHHHHHHh-CCcceeEEeeEeecC--CcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 005436 104 RRLAVQAVASRVAEEM-GVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (697)
Q Consensus 104 r~l~~~~~~~~~~~~~-~~~~~~~~g~~~~~~--~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (697)
++++.|.. +.+.... +..+....|...... ..... ..+|+|+||+.+.+.+..+.. +.++++||+||||. ..+
T Consensus 82 ~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~ 158 (207)
T 2gxq_A 82 RELALQVA-SELTAVAPHLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLS 158 (207)
T ss_dssp HHHHHHHH-HHHHHHCTTSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHH
T ss_pred HHHHHHHH-HHHHHHhhcceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhc
Confidence 99987644 4444443 234433333211100 00112 578999999999988876544 88999999999993 222
Q ss_pred hhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhh
Q 005436 180 TDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH 216 (697)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~ 216 (697)
..+...+...+....++.+++++|||++. +.+.+.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 22322233333334568899999999954 34444443
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=2.2e-18 Score=169.50 Aligned_cols=179 Identities=16% Similarity=0.073 Sum_probs=119.2
Q ss_pred cccCCCCCCccchhhHHHHhcCC-CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~l-Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~ 103 (697)
++|.+++++......+.+. .+ ..+.+|.++++.+.+++++++++|||+|||......+...... .+.++++++|+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 4688888888777666553 33 3789999999999999999999999999995444333332211 23478999999
Q ss_pred cHHHHHHHHHHHHHHh----CCcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 005436 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (697)
Q Consensus 104 r~l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her 176 (697)
++|+.|... .+.+.. +.+++...|....... .......+|+|+||+.+...+..... +.++++||+||||..
T Consensus 92 ~~L~~q~~~-~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 92 RELAFQISK-EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHH-HHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHH-HHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 999887543 233332 4555544442111000 00111468999999999998876654 889999999999943
Q ss_pred CcChhHHHHHHHHHHHhCCCceEEEecccccH
Q 005436 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (697)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~~ 208 (697)
..+.++...+...+....++.+++++|||++.
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence 22234433333333334557899999999943
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=1.7e-18 Score=171.40 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=118.8
Q ss_pred cccCCCCCCccchhhHHHHhcCC-CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhccccCCCeEEEEECc
Q 005436 27 SSLSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~l-Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~--lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
..|.+++++......+.+ ..+ ..+++|.++++.+.+++++++++|||+|||.. +|.+........+.++++++|+
T Consensus 24 ~~f~~l~l~~~l~~~l~~--~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRA--AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp CCGGGGTCCHHHHHHHHH--TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhcCCCHHHHHHHHH--CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 356777777766555544 233 37899999999999999999999999999954 3333222112234678999999
Q ss_pred cHHHHHHHHHHHHHHh----CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 005436 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (697)
Q Consensus 104 r~l~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (697)
++|+.|.... +.... +.+++...|.....+........+|+|+||+.|.+.+..+.. +.++++||+||||. ..
T Consensus 102 ~~L~~q~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~ 179 (230)
T 2oxc_A 102 REIAVQIHSV-ITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LL 179 (230)
T ss_dssp HHHHHHHHHH-HHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HH
T ss_pred HHHHHHHHHH-HHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hh
Confidence 9998875433 33322 445554444221111111112589999999999998876554 78899999999993 32
Q ss_pred Chh-HHHHHHHHHHHhCCCceEEEecccccHHHHHHHh
Q 005436 179 STD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 179 ~~d-~l~~~l~~~~~~~~~~~ii~~SAT~~~~~~~~~~ 215 (697)
+.+ +...+...+.....+.+++++|||++.+ +.+++
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~-~~~~~ 216 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEF-LANAL 216 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHH-HHHHH
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHH-HHHHH
Confidence 222 3222222233344578999999999654 34433
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=169.14 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=114.2
Q ss_pred CCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhcc------ccCCCeEEEEECcc
Q 005436 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAG------WADGGRVIACTQPR 104 (697)
Q Consensus 33 ~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~~------~~~~~~~Ivv~p~r 104 (697)
+++......+.+. .--..+++|.++++.+.++++++++||||||||. ++|.+..... ...+.++++++|++
T Consensus 26 ~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~ 104 (228)
T 3iuy_A 26 QQYPDLLKSIIRV-GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTR 104 (228)
T ss_dssp TTCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSH
T ss_pred ccCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCH
Confidence 4444444445443 2235788999999999999999999999999993 4554332111 12456789999999
Q ss_pred HHHHHHHHHHHHHH--hCCcceeEEeeEeecCCc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 005436 105 RLAVQAVASRVAEE--MGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (697)
Q Consensus 105 ~l~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (697)
+|+.|.. +.+... .+..+....|........ ......+|+|+||+.+.+.+..+.. +.++++||+|||| +..+.
T Consensus 105 ~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~ 182 (228)
T 3iuy_A 105 ELALHVE-AECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDM 182 (228)
T ss_dssp HHHHHHH-HHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHT
T ss_pred HHHHHHH-HHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhcc
Confidence 9988643 334443 244554444432221111 1112579999999999998877665 8999999999999 33333
Q ss_pred hHHHHHHHHHHHhCCCceEEEecccccHH
Q 005436 181 DILLGLLKKIQRCRSDLRLIISSATIEAK 209 (697)
Q Consensus 181 d~l~~~l~~~~~~~~~~~ii~~SAT~~~~ 209 (697)
++...+.+.+....++.++++||||++.+
T Consensus 183 ~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 183 EFEPQIRKILLDVRPDRQTVMTSATWPDT 211 (228)
T ss_dssp TCHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred chHHHHHHHHHhCCcCCeEEEEEeeCCHH
Confidence 44444444455567789999999999653
No 82
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=173.56 Aligned_cols=185 Identities=16% Similarity=0.046 Sum_probs=117.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECc
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~--~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+|..++++......+.+. .--..+.+|.+++..+.++ ++++++|||||||| +++|.+-.......+.++|+++|+
T Consensus 93 ~f~~l~l~~~l~~~l~~~-g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 93 SFEELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CSGGGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CHhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 455555666555555543 2334667888899999887 89999999999999 444544332222234478999999
Q ss_pred cHHHHHHHHH--HHHHHh-CCcceeEEeeEeecCCcCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCc
Q 005436 104 RRLAVQAVAS--RVAEEM-GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSI 178 (697)
Q Consensus 104 r~l~~~~~~~--~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~ 178 (697)
|+|+.|.... .+.... +..+...+|... ....... ..+|+|+||+.|++.+.... .+.++++|||||||. ..
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~-l~ 248 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-MI 248 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH-HH
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc-HhhhhcC-CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH-Hh
Confidence 9999875332 222211 233333333211 1111222 67899999999999986633 378999999999993 33
Q ss_pred C-hhHHHHHHHHHHHhCCCceEEEecccccH--HHHHHHhh
Q 005436 179 S-TDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH 216 (697)
Q Consensus 179 ~-~d~l~~~l~~~~~~~~~~~ii~~SAT~~~--~~~~~~~~ 216 (697)
+ ..+...+...+....++.+++++|||++. ..+.+.+.
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp HSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 3 23333333333335678999999999954 44444443
No 83
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.61 E-value=7.8e-20 Score=171.89 Aligned_cols=118 Identities=17% Similarity=0.311 Sum_probs=104.8
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCcccc
Q 005436 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (697)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~ 347 (697)
..+.....++++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 33333445678999999999999999999765 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC-CCcEEEEccChhHhh
Q 005436 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (697)
Q Consensus 348 Gvdip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~-~~G~~~~l~~~~~~~ 412 (697)
|+|+|++++||+++. |.|..+|.||+||+||. .+|.|+.++++.+..
T Consensus 93 Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 999999999999776 77888999999999999 689999999876543
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=174.88 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=106.5
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhc----cccCCCeEEEEECccHHHHHHHHH--HHHHHhCC
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA----GWADGGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~----~~~~~~~~Ivv~p~r~l~~~~~~~--~~~~~~~~ 121 (697)
..+++|.+++..+.++++++++||||||||. ++|.+.... ....+.++|+++|+++|+.|.... .+....+.
T Consensus 76 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 155 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH 155 (262)
T ss_dssp BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc
Confidence 3789999999999999999999999999993 444332211 112356789999999999875433 22223344
Q ss_pred cceeEEeeEeecCCc--CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCc
Q 005436 122 KVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (697)
Q Consensus 122 ~~~~~~g~~~~~~~~--~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (697)
.++..+|........ ... ..+|+|+||+.+...+.... .+.++++||||||| +..+.++...+...+.....+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~ 233 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTRR 233 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSSS
T ss_pred eEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCCC
Confidence 555555532211111 112 47899999999999887654 48899999999999 3333334433333344456678
Q ss_pred eEEEecccccHH
Q 005436 198 RLIISSATIEAK 209 (697)
Q Consensus 198 ~ii~~SAT~~~~ 209 (697)
++++||||++.+
T Consensus 234 q~l~~SAT~~~~ 245 (262)
T 3ly5_A 234 QTMLFSATQTRK 245 (262)
T ss_dssp EEEEECSSCCHH
T ss_pred eEEEEEecCCHH
Confidence 999999999543
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=167.06 Aligned_cols=173 Identities=20% Similarity=0.142 Sum_probs=111.4
Q ss_pred CCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhc-cccCCCeEEEEECccHHHHH
Q 005436 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA-GWADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 33 ~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~-~~~~~~~~Ivv~p~r~l~~~ 109 (697)
+++......+.+. .--..+++|.++++.+.++++++++||||||||. ++|.+.... ....+.++|+++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILDA-GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 3444444444332 2234789999999999999999999999999994 444332222 11234578999999999987
Q ss_pred HHHHHHHHH---hCCcceeEEeeEee---cCCcCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcC-
Q 005436 110 AVASRVAEE---MGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSIS- 179 (697)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~g~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~- 179 (697)
.... +.+. .+..+....|.... ....... ..+|+|+||+.|...+.... .+.++++||+||||...-.
T Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 114 IHRE-LIKISEGTGFRIHMIHKAAVAAKKFGPKSSK-KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HHHH-HHHHTTTSCCCEECCCHHHHHHTTTSTTSCC-CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HHHH-HHHHhcccCceEEEEecCccHHHHhhhhhcC-CCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 5433 3322 24444333332111 1122223 68999999999999887653 3889999999999943211
Q ss_pred -hhHHHHHHHHHHHh-CCCceEEEecccccH
Q 005436 180 -TDILLGLLKKIQRC-RSDLRLIISSATIEA 208 (697)
Q Consensus 180 -~d~l~~~l~~~~~~-~~~~~ii~~SAT~~~ 208 (697)
..+...+...+... .++.++++||||++.
T Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 192 KTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp --CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred cccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 23444444444332 457899999999954
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.72 E-value=1.7e-17 Score=166.90 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=111.4
Q ss_pred ccCCCCCCccchhhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhc--c-------ccCCCe
Q 005436 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA--G-------WADGGR 96 (697)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~--~lp~~l~~~--~-------~~~~~~ 96 (697)
+|.+++++......+.+. .--..+.+|.++++.+.+++++++++|||||||. ++|.+.... . ...+.+
T Consensus 24 ~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLA-SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp SSGGGSCCCSTTTTTTTT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 455555555444334322 2224688999999999999999999999999994 444332211 1 112357
Q ss_pred EEEEECccHHHHHHHHH--HHHHHhCCcceeEEeeEeecCC-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeC
Q 005436 97 VIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (697)
Q Consensus 97 ~Ivv~p~r~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE 172 (697)
+|+++|+++|+.|.... .+....+..+....|....... .......+|+|+||+.|.+.+..... +.++++||+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 89999999999875433 2222234444444442211110 01112579999999999998877654 88999999999
Q ss_pred CCcCCcChhHHHHHHHHHHH---hCC--CceEEEecccccHH
Q 005436 173 AHERSISTDILLGLLKKIQR---CRS--DLRLIISSATIEAK 209 (697)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~---~~~--~~~ii~~SAT~~~~ 209 (697)
||. ..+..+... +..+.. ... +.+++++|||++.+
T Consensus 183 ah~-~~~~~~~~~-~~~i~~~~~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 183 ADR-MLDMGFEPQ-IRKIIEESNMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp HHH-HHHTTCHHH-HHHHHHSSCCCCGGGCEEEEEESSCCHH
T ss_pred HHH-HHhCchHHH-HHHHHhhccCCCCCCcEEEEEEEeCCHH
Confidence 993 222222222 233333 122 67899999999543
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=4.4e-16 Score=173.83 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhccccCCCeEEEEECccHHHHH--HHHHHHHHHhCCcc
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT--~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~--~~~~~~~~~~~~~~ 123 (697)
.+-.+..|...+..+.+|+ |..+.||+||| +.+|.++... .+.++++++|++.||.| .....+...+|+++
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3445778888888888888 99999999999 5556544332 34568999999999998 45666778889988
Q ss_pred eeEEeeEeecCCcCCCCCceEEEechHHH-HHHHhcC-------CCCC---CCcEEEEeCCC
Q 005436 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLT---KYSVIMVDEAH 174 (697)
Q Consensus 124 ~~~~g~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~---~~~~iIiDE~H 174 (697)
+..+|........... .++|+|+||+.| ++.+..+ ..++ ++.++||||+|
T Consensus 152 ~~i~Gg~~~~~r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 152 GVIQHASTPAERRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp EECCTTCCHHHHHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred EEEeCCCCHHHHHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 8777743222222223 579999999999 6766544 2367 89999999999
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=159.62 Aligned_cols=159 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc-----ccCCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-----WADGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 45 ~r~~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~-----~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
....++++++|.++++.+.+++++++.+|||+|||+++...+.... ...+.++++++|++.|+.|.+.+.+....
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999965554443221 11256789999999998886666555544
Q ss_pred C--CcceeEEeeEeecCC--cCCCCCceEEEechHHHHHHHhcC-------CCCCCCcEEEEeCCCcCCcChhHHHHHHH
Q 005436 120 G--VKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDD-------PLLTKYSVIMVDEAHERSISTDILLGLLK 188 (697)
Q Consensus 120 ~--~~~~~~~g~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~-------~~l~~~~~iIiDE~Her~~~~d~l~~~l~ 188 (697)
+ ..++...|....... .... ..+|+|+||+.|.+.+... ..+.++++||+||||.. ....+...++.
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~ 185 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIMR 185 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHH
T ss_pred ccCceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHHH
Confidence 3 344444442211111 0011 4789999999999887664 33788999999999954 23333333333
Q ss_pred HHHHhC--------------CCceEEEeccc
Q 005436 189 KIQRCR--------------SDLRLIISSAT 205 (697)
Q Consensus 189 ~~~~~~--------------~~~~ii~~SAT 205 (697)
.+.... ++.++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332211 67899999998
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.63 E-value=9.1e-16 Score=170.82 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEE
Q 005436 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (697)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilv 340 (697)
......+..+... .++.+|||++|....+.+++.+.. .. ...++.. .++.++++.|+.|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 3444455555443 567899999999999998876632 22 2345543 35677777787654 5666
Q ss_pred --ecCccccccCCCC----eEEEEecCcccceeecCC-------------CCcccccccccCHHhHHHhhcccCCC--CC
Q 005436 341 --STNIAETSLTLEG----IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (697)
Q Consensus 341 --aT~i~e~Gvdip~----v~~VId~g~~k~~~yd~~-------------~~~~~l~~~~~S~~~~~Qr~GRaGR~--~~ 399 (697)
+|..+.+|||+|+ +++||..|++-...-|+. .+...+.. +.......|.+||+-|. ..
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIH-DLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHH-HHHHHHHHHHhCCcccCCCcc
Confidence 8899999999998 899999888533222221 11111111 22267888999999998 45
Q ss_pred cEEEEc
Q 005436 400 GKCYRL 405 (697)
Q Consensus 400 G~~~~l 405 (697)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 655443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.55 E-value=7e-15 Score=150.12 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc---cee
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VGE 125 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~---~~~ 125 (697)
+.++.+|.+++..+.++++.++++|||+|||.++..++.......++++++++|+++|+.|... .+.+..... ++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~-~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMAD-DFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHH-HHHHHTSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhcccccceEEE
Confidence 5789999999998888888999999999999665444443222234589999999999876544 344443221 111
Q ss_pred EEeeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecc
Q 005436 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSA 204 (697)
Q Consensus 126 ~~g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SA 204 (697)
..|.....+ ......+|+|+|++.+.+.. ...+.++++||+||||... .. .+..+.. .....+++++||
T Consensus 191 ~~~~~~~~~--~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~--~~----~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD--KYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT--GK----SISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT--CCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC--HH----HHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh--hhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC--cc----cHHHHHHHhhcCCeEEEEeC
Confidence 111111110 11126899999999876431 1236788999999999433 22 2222222 345789999999
Q ss_pred cc
Q 005436 205 TI 206 (697)
Q Consensus 205 T~ 206 (697)
|+
T Consensus 261 Tp 262 (282)
T 1rif_A 261 SL 262 (282)
T ss_dssp SC
T ss_pred CC
Confidence 99
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.50 E-value=1.4e-13 Score=136.15 Aligned_cols=137 Identities=22% Similarity=0.197 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCc-ceeEE
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEEV 127 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~-~~~~~ 127 (697)
...+.+|.+++..+.+++++++++|||+|||.++..++... +.++++++|++.|+.|.. +.+.+ ++.. ++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~-~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWK-ERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHH-HHHGG-GCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHH-HHHHh-CCCCeEEEEe
Confidence 45789999999999999999999999999997766555543 467899999999887644 33444 5665 54433
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
|. ... ..+|+|+|++.+.+.... ...++++|||||+|.. .... .+.+....+..+++++|||+.
T Consensus 166 g~-------~~~-~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l-~~~~-----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 166 GR-------IKE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAES-----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SS-------CBC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC-CTTT-----HHHHHHTCCCSEEEEEEESCC
T ss_pred CC-------CCC-cCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC-CChH-----HHHHHHhccCCEEEEEecCCC
Confidence 32 112 578999999998765432 1356899999999943 2222 223444456778999999994
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.48 E-value=1.2e-12 Score=146.32 Aligned_cols=123 Identities=18% Similarity=0.108 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcE
Q 005436 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (697)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~k 337 (697)
++.......+..+... .+|.+|||+|+....+.+++. .+..+..-..+++..+..+.++ ..+ .-
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~ 439 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KV 439 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SC
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-Ce
Confidence 3445566666666554 567899999999998888751 1334444334566655555554 233 47
Q ss_pred EEEec--CccccccCCC-----CeEEEEecCcccceeecC-----------CCCcccc---cccccCHHhHHHhhcccCC
Q 005436 338 VVIST--NIAETSLTLE-----GIVYVVDSGFSKQRFYNP-----------ISDIENL---VVAPISKASARQRAGRAGR 396 (697)
Q Consensus 338 ilvaT--~i~e~Gvdip-----~v~~VId~g~~k~~~yd~-----------~~~~~~l---~~~~~S~~~~~Qr~GRaGR 396 (697)
|++|| ..+.+|||+| ..+.||-.|++-... || ..+-+.+ ...| -.....|-+||+=|
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR 517 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIR 517 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCC
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCcc
Confidence 99998 6999999999 478888877754333 33 1122111 2234 67778899999999
Q ss_pred CC
Q 005436 397 VR 398 (697)
Q Consensus 397 ~~ 398 (697)
..
T Consensus 518 ~~ 519 (551)
T 3crv_A 518 DV 519 (551)
T ss_dssp ST
T ss_pred CC
Confidence 83
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.34 E-value=6e-13 Score=134.04 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCC-CcE-EEEecCccccccCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLE 352 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~k-ilvaT~i~e~Gvdip 352 (697)
.+.++|||+.....++.+.+.|.... ++.+..+||+++.++|.++++.|++| ..+ +|++|+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46789999999999999999997743 56788899999999999999999988 666 799999999999999
Q ss_pred CeEEEEecCcccceeecCCCCcccccccccCHHhHHHhhcccCCC---CCcEEEEccChhHhhh
Q 005436 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (697)
Q Consensus 353 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~~~~~Qr~GRaGR~---~~G~~~~l~~~~~~~~ 413 (697)
++++||+++. |.+.+.+.||+||++|. ++-.+|+++++...+.
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999555 55566677999999998 3456788888765544
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.20 E-value=3.1e-10 Score=127.66 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEE
Q 005436 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (697)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kil 339 (697)
.......+..+... .+|.+|||++|....+.+++.+. . .+.. ...+++..++..+++.|+ +.--|+
T Consensus 433 ~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL 498 (620)
T 4a15_A 433 LDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGTI 498 (620)
T ss_dssp HHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEE
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcEE
Confidence 34445555555544 46679999999999888877664 1 1222 445566677888888888 888899
Q ss_pred EecC--ccccccCCCC--eEEEEecCcccceeecCC-------------CCcccccccccCHHhHHHhhcccCCC--CCc
Q 005436 340 ISTN--IAETSLTLEG--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RPG 400 (697)
Q Consensus 340 vaT~--i~e~Gvdip~--v~~VId~g~~k~~~yd~~-------------~~~~~l~~~~~S~~~~~Qr~GRaGR~--~~G 400 (697)
++|. .+.+|||+|+ .+.||-.|+.-... ||. .++..-...| ......|-+||+=|. ..|
T Consensus 499 ~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G 576 (620)
T 4a15_A 499 FAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTG 576 (620)
T ss_dssp EEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCE
T ss_pred EEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceE
Confidence 9974 9999999986 55788777742211 110 1111001123 456678999999998 446
Q ss_pred EEEEc
Q 005436 401 KCYRL 405 (697)
Q Consensus 401 ~~~~l 405 (697)
..+.+
T Consensus 577 ~v~ll 581 (620)
T 4a15_A 577 ACVIL 581 (620)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.14 E-value=7.8e-06 Score=91.81 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc---ccCCCeEEEEECccHHHHH
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG---WADGGRVIACTQPRRLAVQ 109 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~---~~~~~~~Ivv~p~r~l~~~ 109 (697)
..|.+++..+.++++++++|++||||||.+..++.... ...+.++++++||.+.+.+
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~ 211 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH
Confidence 45777777777899999999999999977654443211 1234578889999988765
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.79 E-value=5.6e-05 Score=83.95 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHH
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~ 108 (697)
...+...|.+++..+.+++.++|+|+.||||||++..++... ...+.++++++|+.+.+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~ 246 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAAR 246 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHH
Confidence 345678899999999999999999999999998776655433 224567888889877654
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=0.00011 Score=79.83 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHhc-----CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHH
Q 005436 51 VYKYRTAILYLVET-----HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (697)
Q Consensus 51 i~~~q~~i~~~l~~-----~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~ 108 (697)
+...|++++..+.. ...++|.|+.|||||+++-.++..........+++++|+...+.
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKK 88 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHH
Confidence 56677777775532 24999999999999987766554432222236788888876543
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.52 E-value=0.00012 Score=70.46 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=64.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
..+..++++|++|+||||.+.+.+..... .+.+++++.|...- + . ...+....|. . ..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~-------r-~---~~~i~srlG~--------~--~~ 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDT-------R-S---IRNIQSRTGT--------S--LP 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCG-------G-G---CSSCCCCCCC--------S--SC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCc-------h-H---HHHHHHhcCC--------C--cc
Confidence 35678899999999999998888766532 34567777655321 0 0 0011111110 0 11
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
.+.+.+.+.++..+.....-.++++|||||++. +..+ ....+..+... +..+|+..-
T Consensus 68 ~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 233455666766665543345689999999994 3333 33344554443 566666543
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.39 E-value=0.00089 Score=71.03 Aligned_cols=133 Identities=22% Similarity=0.234 Sum_probs=75.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+...... .+.++ ++-+.+.+.++.......+...+..+.. ... .
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~---------~~~---~--- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG---------EPN---N--- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC---------CTT---C---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCceee---------ccc---c---
Confidence 57889999999999888766654432 34444 5556666666655445455555543210 000 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC--cChhHHHHHHHHHHHhCCCceEEEecccc--cHHHHHHHhh
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFH 216 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~--~~~d~l~~~l~~~~~~~~~~~ii~~SAT~--~~~~~~~~~~ 216 (697)
..|..+...........++++||||++.... .+..+...+........++.-+++++|+. +.....+.|.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 1233332222222223578999999998333 34444444444333456677788888887 4444455554
No 100
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0014 Score=66.63 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=65.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcccc--C----CCeEEEEECccHHHHHHHHHHHHHHh-CCcceeEEeeEeecCCc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWA--D----GGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFEDF 136 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~----~~~~Ivv~p~r~l~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 136 (697)
...+++|.||+|+|||+++-..+.+.... . .-..+.+-...-.....+...+...+ |...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~------------- 110 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL------------- 110 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-------------
Confidence 45789999999999997776665443211 1 11345554333222223333344333 2210
Q ss_pred CCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 137 TNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
... . +...|.+.+.... .-....+|++||+|... ..+.+..+++.......++-+|+.++|++
T Consensus 111 ~~~-~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 111 CGD-I------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CC-C------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred Cch-H------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 000 0 1233333332211 12345689999999544 67777776664333445677888899984
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.002 Score=59.81 Aligned_cols=38 Identities=26% Similarity=0.139 Sum_probs=26.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.++.+++.||+|+||||++-.+........+..++++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 57899999999999998887766544222333444443
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.16 E-value=0.0081 Score=62.68 Aligned_cols=153 Identities=12% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh-ccccCCCeEEEEECccHHHHHHHHHHHH---HHhCCcc
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVA---EEMGVKV 123 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~-~~~~~~~~~Ivv~p~r~l~~~~~~~~~~---~~~~~~~ 123 (697)
.+.+..+|..++..+...+.+++..+-+.|||+++..++.. .....+..++++++++..+...+ +.+. +......
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf-~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPDFL 239 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHH-HHHHHHHHHSCTTT
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHHHHHHhChHhh
Confidence 35689999999998877788999999999999776655443 22334557888889888775533 3333 2222101
Q ss_pred e----eEEeeEeecCCcCCCCCceEEEec--hHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCc
Q 005436 124 G----EEVGYTIRFEDFTNKDLTAIKFLT--DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (697)
Q Consensus 124 ~----~~~g~~~~~~~~~~~~~~~I~v~T--~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (697)
. ......+.+. . +..|.+.+ ++.+. . .+.+++|+||+|...-..+.+.. +......+++.
T Consensus 240 ~~~~~~~~~~~I~f~----n-Gs~i~~lsa~~~slr----G----~~~~~viiDE~a~~~~~~el~~a-l~~~ls~~~~~ 305 (385)
T 2o0j_A 240 QPGIVEWNKGSIELD----N-GSSIGAYASSPDAVR----G----NSFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRS 305 (385)
T ss_dssp SCCEEEECSSEEEET----T-SCEEEEEECSHHHHH----T----SCCSEEEEESGGGSTTHHHHHHH-HHHHHHSTTCC
T ss_pred hhhhccCCccEEEeC----C-CCEEEEEECCCCCcc----C----CCCCEEEechhhhcCCCHHHHHH-HHHHhhcCCCC
Confidence 1 0111122221 1 34444444 33322 1 34689999999953211233333 33333333344
Q ss_pred eEEE-ecccccHHHHHHHhh
Q 005436 198 RLII-SSATIEAKSMSAFFH 216 (697)
Q Consensus 198 ~ii~-~SAT~~~~~~~~~~~ 216 (697)
++++ .|++.. ..+.+++.
T Consensus 306 kiiiiSTP~g~-n~fy~l~~ 324 (385)
T 2o0j_A 306 KIIITTTPNGL-NHFYDIWT 324 (385)
T ss_dssp EEEEEECCCSS-SHHHHHHH
T ss_pred cEEEEeCCCCc-hhHHHHHH
Confidence 4444 444444 35555553
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.11 E-value=0.0013 Score=61.54 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.+...+++||.|+||||.+.+.+.... ..+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 367889999999999998877765542 234566766665
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.02 E-value=0.0027 Score=59.48 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.++..+++||.||||||.+...+.... ..+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 456889999999999988887776553 345567777655
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.97 E-value=0.0024 Score=72.49 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh---ccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE---AGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~---~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
.+.+.|.+++.. .+..++|.|+.|||||+.+..-+.. .......+++++++|+..+. .+.+++....+
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~-e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAA-EMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHH-HHHHHHHHHHC
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHH-HHHHHHHHHhc
Confidence 366778887763 3567899999999999665443322 11112356889999887765 56666666554
No 106
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.95 E-value=0.0038 Score=66.23 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=70.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+...... .+.++ ++.+.+.+.++....+..+...+.++.. ....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~---------~~~~------ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG---------NPQE------ 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC---------CTTC------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe---------cCCC------
Confidence 57899999999999887766654432 34444 4555666666554444445545443210 0000
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhCCCceEEEecccc--cHHHHHHHhh
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATI--EAKSMSAFFH 216 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~-~~~~~~~ii~~SAT~--~~~~~~~~~~ 216 (697)
..|..+.+.......-.++++||||.+- |....+-+..-++.+. ...++.-++.++||. +.....+.|.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 1232222211111011358999999997 4433333333344333 345777788899987 3333444454
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.82 E-value=0.0032 Score=59.61 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
.+...+++|+-||||||.+...+.... ..+.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 456778999999999988887776553 3455677776654
No 108
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.82 E-value=0.012 Score=65.61 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccc-cCCCeEEEEECccHHHHHHHHHHHHHH
Q 005436 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEE 118 (697)
Q Consensus 49 lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~-~~~~~~Ivv~p~r~l~~~~~~~~~~~~ 118 (697)
+.+..+|..++..+...+.+++.++-|+|||+.+..++..... ..+..++++.+++..+.. +...+...
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~-~~~~i~~~ 231 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQA 231 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHH
Confidence 4578999999999877788999999999999776655443222 234478899999887766 33444443
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.013 Score=55.95 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHh
Q 005436 54 YRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 54 ~q~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+.+.+.+..+ ..+++.||+|+|||+++-.+...
T Consensus 25 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 334455555544 35999999999999877665543
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.76 E-value=0.0076 Score=53.67 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
.+.+-.+...+..+++.||+|+|||+++-.+.
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 34444445677889999999999996665443
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.73 E-value=0.00073 Score=60.81 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++.+++.||+|+|||+++..+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999998887665543
No 112
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.011 Score=57.06 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 005436 54 YRTAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 54 ~q~~i~~~l~~~~---~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+.+...+..++ .+++.||+|+|||+++-.+...
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555666554 7999999999999888766544
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.59 E-value=0.0047 Score=65.00 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=59.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEEE
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKF 146 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~v 146 (697)
.++|.||+|+|||+++-.+........+..++.+..........+...+...++.... .. .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-------------~~-~----- 106 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-------------RR-G----- 106 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-------------SS-C-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-------------CC-C-----
Confidence 8999999999999888766654421113345655533222122333344444432110 00 0
Q ss_pred echHHHH----HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhC----CCceEEEecccc
Q 005436 147 LTDGVLL----REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR----SDLRLIISSATI 206 (697)
Q Consensus 147 ~T~~~Ll----~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~----~~~~ii~~SAT~ 206 (697)
.+.+.+. ..+.. .....+|||||+|.. +.+.+..+.+.+.... .++.+|+.|...
T Consensus 107 ~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l--~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRE---RDLYMFLVLDDAFNL--APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCHHHHHHHHHHHHHH---TTCCEEEEEETGGGS--CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCHHHHHHHHHHHHhh---cCCeEEEEEECcccc--chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 0122222 22221 234569999999943 4445444444432211 466677666554
No 114
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.59 E-value=0.0035 Score=70.99 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=45.1
Q ss_pred cHHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 51 VYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 51 i~~~q~~i~~~-l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
+...|.+++.. +.+.+..+|+||+|||||+.+..++... ...+.++++++|+...+ +.+.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~Av-D~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNIAV-DNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchHHH-HHHHHHHHh
Confidence 56667666655 4556799999999999997666555543 23566788888887654 456666643
No 115
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.59 E-value=0.0079 Score=60.89 Aligned_cols=122 Identities=22% Similarity=0.256 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEE-EECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIA-CTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Iv-v~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
++.+.++|++|+||||.+..+...... .++++++ -..+++.++....+.+.+..+..+. . .....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~---~------~~s~~---- 169 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI---S------HSEGA---- 169 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE---C------CSTTC----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEE---e------cCCcc----
Confidence 457889999999999888776654432 3445543 4455555443222333444444321 0 00111
Q ss_pred EEEechHHHH-HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-------CCCceEEEecccc
Q 005436 144 IKFLTDGVLL-REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-------RSDLRLIISSATI 206 (697)
Q Consensus 144 I~v~T~~~Ll-~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-------~~~~~ii~~SAT~ 206 (697)
.|..+. +.+.. ....++++||+||+- +....+.+...++.+... .++--++.+.|+.
T Consensus 170 ----~~~~v~~~al~~-a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ----DPAAVAFDAVAH-ALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ----CHHHHHHHHHHH-HHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ----CHHHHHHHHHHH-HHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 122221 11110 113468999999997 444444444444444331 2444466677775
No 116
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.59 E-value=0.0034 Score=66.32 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+.+..+|.|+.|||||+.+-..+.. ...++++|+++++. .+.+++... +. . . ...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~-~l~~kl~~~-~~---------------~-~-~~~ 214 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAE-MIRRRANAS-GI---------------I-V-ATK 214 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHH-HHHHHHTTT-SC---------------C-C-CCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHH-HHHHHhhhc-Cc---------------c-c-ccc
Confidence 3457899999999999887655421 34689999999874 343333211 10 0 0 223
Q ss_pred EEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 144 IKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+.|-+.++.. .... ...+++|||||+- ..+...+..++.. .+..++|++.
T Consensus 215 ~~V~T~dsfL~~--~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvG 267 (446)
T 3vkw_A 215 DNVRTVDSFLMN--YGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYG 267 (446)
T ss_dssp TTEEEHHHHHHT--TTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEE
T ss_pred ceEEEeHHhhcC--CCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEec
Confidence 447787776532 1111 2348999999997 4455555444432 2235566655
No 117
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.54 E-value=0.0087 Score=59.34 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
......+..+++.||+|+|||+++-.+.... ...+...+.+.
T Consensus 23 ~~~~~~~~~vll~G~~GtGKt~la~~i~~~~-~~~~~~~~~v~ 64 (265)
T 2bjv_A 23 SHLAPLDKPVLIIGERGTGKELIASRLHYLS-SRWQGPFISLN 64 (265)
T ss_dssp HHHTTSCSCEEEECCTTSCHHHHHHHHHHTS-TTTTSCEEEEE
T ss_pred HHHhCCCCCEEEECCCCCcHHHHHHHHHHhc-CccCCCeEEEe
Confidence 3334567789999999999997665544333 22233444443
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.48 E-value=0.0062 Score=57.63 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
..+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 7899999999999987766554432 2344455554
No 119
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.47 E-value=0.012 Score=60.56 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecc
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SA 204 (697)
.+.+.+...+......++||||+|. ...+....+++.+..-.++..+|+.+-
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred HHHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 4455555556667789999999994 334445555555443334455555543
No 120
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.41 E-value=0.01 Score=61.94 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
..+...+...+......+|||||+|.. +.+....+++.+.....+..+|+.+
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~l--~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGGS--CHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHHhhccccCCeEEEEEECcchh--cHHHHHHHHHHHhcCCCceEEEEEe
Confidence 445555555555667889999999943 3444445555444333445455544
No 121
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.37 E-value=0.0062 Score=68.49 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~ 116 (697)
+...|.+++..+..++.++|.||+|+|||+.+..++.......+.++++++|+...+. .+.+++.
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~-~l~~~l~ 245 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD-QLTEKIH 245 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHH-HHHHHHH
Confidence 5788888888888888999999999999977665554332224567888888875554 5555544
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.016 Score=58.33 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=65.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE-CccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~-p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
.++++.++|++|+||||.+..+........+.++.++. .+.+.++.......+...+..+.. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~------------~---- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV------------C---- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB------------C----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe------------c----
Confidence 35789999999999998888776544322344554443 343333322222233333322100 0
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccccHHHHHHHh
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFF 215 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~~~~~~~~~~ 215 (697)
..+..+...+.. +.++++||+|.+- +......+..-+..+.. ..++-.+++++||.....+.++.
T Consensus 168 ----~~~~~l~~al~~---~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ----YTKEEFQQAKEL---FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ----SSHHHHHHHHHH---GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ----CCHHHHHHHHHH---hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 123333222221 3678999999776 44333222222222222 22344577887887666565553
No 123
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.24 E-value=0.013 Score=52.00 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHH
Q 005436 54 YRTAILYLVETHATTIIVGETGSGKTTQIP 83 (697)
Q Consensus 54 ~q~~i~~~l~~~~~~ii~apTGsGKT~~lp 83 (697)
.++.+......+..+++.||+|+|||+++-
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 344444455677889999999999996554
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.24 E-value=0.0073 Score=57.05 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=28.0
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
..+...+++||-||||||.+...+..... .+.+++++.|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 45788999999999999866655554432 345677776654
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.23 E-value=0.007 Score=58.73 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++.+++.||+|+|||+++-.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999998877665443
No 126
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.15 E-value=0.021 Score=58.48 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
...+++.||+|+|||+++-.+...... .+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 357999999999999887766554321 234556554
No 127
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.015 Score=55.52 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
.+...+++|+-||||||.+-..+.... ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 467889999999999988877766553 3455667766554
No 128
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.07 E-value=0.0085 Score=60.91 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
++.+++.||||+|||+++-.+........+..++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 58999999999999977765554432123445665553
No 129
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.04 E-value=0.0093 Score=68.67 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~ 116 (697)
+...|.+++..+..++.++|.||+|+|||+.+..++.......+.++++++|+...+ ..+.+++.
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~-~~l~~~l~ 421 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV-DQLTEKIH 421 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHH-HHHHHHHH
Confidence 577888888888788899999999999997766555433222456788888887554 45555543
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.036 Score=56.51 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~~--~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+.+++ .+++.||+|+|||+++-.+...
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34445555554 7999999999999877665543
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.008 Score=63.08 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....++|.||+|+|||+++-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887766544
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.97 E-value=0.016 Score=58.73 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.2
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l 86 (697)
..+++.||+|+|||+++-.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999997776443
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.96 E-value=0.019 Score=58.71 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
.+..+.+.||+|+||||++..+...... .++++ +.-..+.+..+....+..+...++.+. . ... ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v---~-----q~~-~~--- 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---K-----HSY-GA--- 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE---C-----CCT-TC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEE---e-----ccc-cC---
Confidence 4678999999999999988876654332 33444 444555555544433444555554221 1 000 00
Q ss_pred eEEEechH-HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 143 AIKFLTDG-VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 143 ~I~v~T~~-~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
.|. ...+.+... ....++++++|.+............+........++..++.+.|+..
T Consensus 195 -----~p~~~v~e~l~~~-~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 195 -----DPAAVAYDAIQHA-KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp -----CHHHHHHHHHHHH-HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred -----CHHHHHHHHHHHH-HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 011 111111000 01356789999987323333344433333333567788888988873
No 134
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0092 Score=68.78 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHH
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~ 117 (697)
+...|.+++..+.+++.++|.||+|||||+.+..++.......+.++++++|+...+. .+.+++..
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d-~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD-HLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH-HHHHHHHh
Confidence 5688888888888888999999999999976655544322113567888888876654 55555543
No 135
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.033 Score=56.32 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEec
Q 005436 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (697)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~S 203 (697)
.+...+...|......++||||+|. +..+....+++.+..-.++..+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4555556666677899999999993 34444555555554444455555554
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.85 E-value=0.016 Score=53.90 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.++..++.||.|||||+.+.+.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 4678899999999999887777765533 34677888776
No 137
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.84 E-value=0.026 Score=58.10 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 54 ~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+.+.+.+..++.++|.||.|+|||+++-.+....
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 344555666667899999999999999988876553
No 138
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.80 E-value=0.021 Score=57.92 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.....+..+++.||||+|||+++-.+..
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3345567899999999999966655443
No 139
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.79 E-value=0.05 Score=54.73 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=61.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 142 (697)
.++.+.++|++|+||||.+..+...... .+++++++ ..+++-+.......+....+..+. .+. . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~--~~~------~-~---- 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EVM------D-G---- 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--ECC------T-T----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEE--EcC------C-C----
Confidence 3457888899999999887766554332 34455444 334443332222223344443321 000 0 0
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
..|..+.+.........++++|||||.-....+......+.+......++.-++.+.|+.
T Consensus 163 ----~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 ----ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ----CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 123333322211111246899999999523444433444333333344555555666664
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.75 E-value=0.062 Score=54.83 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=21.8
Q ss_pred HHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETH---ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~---~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+.++ ..+++.||+|+|||+++-.+...
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3444455544 35677788999999877665544
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.015 Score=60.98 Aligned_cols=46 Identities=7% Similarity=-0.067 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCccCCCCCChHhhc-ccccCCCChhhHH
Q 005436 450 ASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGF-QVAEIPLEPMISK 495 (697)
Q Consensus 450 ~~p~~~~~~~a~~~L~~lgald~~~~lT~~lG~-~~~~~pl~p~~~~ 495 (697)
+|.....+.++++.|...|.|+....-.-.-|+ .+-.|.++|..-.
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~v~ 362 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEKVL 362 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHHHHH
Confidence 456778899999999999999743210001343 3556777776543
No 142
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.013 Score=60.75 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=24.3
Q ss_pred HHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~--~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+..+ .++++.||+|+|||+++-.+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4555566665 56999999999999877655543
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.039 Score=56.41 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|+|||+++-.+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 679999999999998777665543
No 144
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.38 E-value=0.029 Score=62.38 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEEee
Q 005436 52 YKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (697)
Q Consensus 52 ~~~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~ 129 (697)
...|.++++.+.. ....+|+|+-|.|||+.+-.++.... ..+++++|+.+-+. .+.+...
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~-~l~~~~~------------- 238 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTD-VLAQFAG------------- 238 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCH-HHHHHHG-------------
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHH-HHHHHhh-------------
Confidence 4567777777765 56789999999999988887776553 23577777765443 3333211
Q ss_pred EeecCCcCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccccc
Q 005436 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (697)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~~ 207 (697)
..|-|..|+.++. ...+.+++|||||= .+....+..++. ..+.|+||.|++
T Consensus 239 ------------~~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll~~ll~-------~~~~v~~~tTv~ 289 (671)
T 2zpa_A 239 ------------EKFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLLHQLVS-------RFPRTLLTTTVQ 289 (671)
T ss_dssp ------------GGCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHHHHHHT-------TSSEEEEEEEBS
T ss_pred ------------CCeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHHHHHHh-------hCCeEEEEecCC
Confidence 0155667766542 13468999999996 555555444432 234688888983
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.34 E-value=0.072 Score=55.06 Aligned_cols=42 Identities=19% Similarity=0.515 Sum_probs=27.4
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEeccc
Q 005436 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (697)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT 205 (697)
..+..++|+||+|. ++.+....+++.+.....+..+|+.|-.
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 34678999999994 5666666666666555556666666544
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.017 Score=60.52 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++|.||+|+|||+++-.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888766554
No 147
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.28 E-value=0.013 Score=62.23 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHcCCccCCCC-CChHhhcc-cccCC--CChhhH
Q 005436 451 SPPPEAMIRALEVLYSLGVLDDDAK-LTSPTGFQ-VAEIP--LEPMIS 494 (697)
Q Consensus 451 ~p~~~~~~~a~~~L~~lgald~~~~-lT~~lG~~-~~~~p--l~p~~~ 494 (697)
+.....+..+++.|...|.|..... -. .-|+. +-.+. ++|..-
T Consensus 349 ~~~~~~~~~~l~~L~~~gli~~~~~~~~-~~g~~~~~~l~~~~~~~~~ 395 (412)
T 1w5s_A 349 PRGYTQYHIYLKHLTSLGLVDAKPSGRG-MRGRTTLFRLAPHLPADRL 395 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEECC--------CCEEEECTTSCHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEeecccCC-CCCceeEEEeCCCCCHHHH
Confidence 3456778889999999999964321 11 13443 44455 666553
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.23 E-value=0.024 Score=61.07 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
-+.++--+..++.++|.|++|+|||+++-+++.......+.+++++...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3445555678899999999999999888887776543334467777644
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.20 E-value=0.044 Score=56.47 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCE--EEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETHAT--TIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~~~--~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+.+++. +++.||+|+|||+++-.+...
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345555666655 999999999999887766544
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.16 E-value=0.12 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999777665543
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.15 E-value=0.03 Score=55.99 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.....+++.||+|+|||+++-.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999877766544
No 152
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.07 E-value=0.12 Score=55.18 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEE
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~ 101 (697)
.+.+++.||+|+|||+++-.+....... .+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3579999999999998876555433111 234455554
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.06 E-value=0.07 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 578999999999999887766544
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.04 E-value=0.021 Score=55.01 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=29.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.||+|+||||++-+++..... .+++++++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcc
Confidence 556889999999999999888877654322 34556666644
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.02 E-value=0.059 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....+++.||+|+|||+++-.+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999877766544
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.97 E-value=0.11 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.||+|+|||+++-.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57999999999999777665443
No 157
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.94 E-value=0.065 Score=56.35 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999777666444
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.054 Score=55.05 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=22.7
Q ss_pred HHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~~--~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+...+.+++ ++++.||+|+|||+++-.+...
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34444555442 4999999999999777665543
No 159
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.78 E-value=0.38 Score=49.31 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+.+ +.. +.++|.||.|+|||+++-.+....
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 34444 444 799999999999999888777654
No 160
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.58 E-value=0.049 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999777666544
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.14 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.++++||+|+|||+++-.+..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998877666554
No 162
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.53 E-value=0.21 Score=52.66 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+.++.++|++|+||||.+..+...... .++++ ++-..+.+.++.......+...++.+-. .. . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~--~~----~------~-- 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VM----D------G-- 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CC----T------T--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHhcccCCccEEe--cC----C------C--
Confidence 346888899999999887766554432 34444 4444555555443223334444543211 00 0 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
..|..+............+++||||=+-....+......+........++.-++.+.|+.
T Consensus 163 ---~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 123333221111100146899999977522233333333322222234555566666653
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.35 E-value=0.085 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999777665544
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.29 E-value=0.072 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+++.||+|+|||+++-.+..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 569999999999998777665544
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.18 E-value=0.74 Score=51.25 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...+.+..++..+..+++.||+|+||||++-.+....
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3346677778889999999999999998887665543
No 166
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.93 E-value=0.13 Score=55.08 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=27.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRL 106 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l 106 (697)
.+.++.|.|++||||||++..+...... .++.+.+. ..+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccch
Confidence 3568899999999999988876554322 34555554 344343
No 167
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.80 E-value=0.14 Score=51.52 Aligned_cols=123 Identities=23% Similarity=0.195 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCce
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 143 (697)
+..+.++|++|+||||.+..+...... .+++++++ ..+++-++....+..+...+..+.. +. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~~-------~~----- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EP-------GE----- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--CT-------TC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--cC-------CC-----
Confidence 347888999999999888776654432 34455443 4444433332222334444443211 10 00
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc--ChhHHHHHHHHHH-HhCCCceEEEecccc
Q 005436 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI--STDILLGLLKKIQ-RCRSDLRLIISSATI 206 (697)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~--~~d~l~~~l~~~~-~~~~~~~ii~~SAT~ 206 (697)
..|..++..........++++||||=+- +.. ..+.+...++.+. ...++.-++.+.|+.
T Consensus 163 ---~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 ---KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333221111001468999999987 333 3333333333332 234566666677764
No 168
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.80 E-value=0.09 Score=59.67 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH---hccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcceeEE
Q 005436 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (697)
Q Consensus 51 i~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~---~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~~~~ 127 (697)
+.+.|.+++.. .+..++|.|+.|||||+.+..-+. ........+++++|.|+..+. ++.+++....+...
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~-em~~Rl~~~l~~~~---- 75 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR-EMKERVGQTLGRKE---- 75 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHH-HHHHHHHHHSCTTT----
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH-HHHHHHHHHcCccc----
Confidence 45677777765 367899999999999965543222 211113356888998887655 66777776654320
Q ss_pred eeEeecCCcCCCCCceEEEechHHHHHHH
Q 005436 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREM 156 (697)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l 156 (697)
...+.|+|-..+...+
T Consensus 76 -------------~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 76 -------------ARGLMISTFHTLGLDI 91 (673)
T ss_dssp -------------TTTSEEEEHHHHHHHH
T ss_pred -------------ccCCEEEeHHHHHHHH
Confidence 1246677876665443
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.77 E-value=0.038 Score=54.53 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=28.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
+..++.+.|+|||||||||++..++........+.+++.-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 6788899999999999999888766543222134554443
No 170
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.76 E-value=0.31 Score=50.47 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=31.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
+..+..++|.|++|+|||+++.+++..... .+.+++++....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 456789999999999999888777765432 355678877654
No 171
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.60 E-value=0.12 Score=55.43 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+.+++.||+|+|||+++-.+..+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999998777665543
No 172
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.58 E-value=0.054 Score=51.39 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 54 ~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
-+..+++.+..++.+.|.||.||||||++-.+.-.
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567888899999999999999999988876544
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.56 E-value=0.057 Score=55.63 Aligned_cols=44 Identities=27% Similarity=0.216 Sum_probs=32.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
+..+..++|.||+|+||||++.+++..... .+++++++......
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHAL 101 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccccc
Confidence 445788999999999999988887765432 45667888765443
No 174
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.45 E-value=0.5 Score=47.93 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLA 107 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~ 107 (697)
++.+.++|++|+||||.+..+...... .+++++++ ..+++.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAG 147 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchh
Confidence 347889999999999887766554332 34555444 4454444
No 175
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.42 E-value=0.057 Score=55.78 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=28.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
...+..++|+|||||||||++..++.......++.++.+-.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 345668999999999999998876554332234555555444
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.36 E-value=0.094 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.||+|+|||+++-.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 5999999999999777655543
No 177
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.17 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+-+++.||+|+|||.++-.+..+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3679999999999996665554443
No 178
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.08 E-value=0.32 Score=52.55 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=59.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE-CccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceEE
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~-p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I~ 145 (697)
+++++|++|+||||++..++..... .+.+++++. -+.+-++....+......++.+. +. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~---~~------~~~~------ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPFY---GS------YTEM------ 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE---EC------CCCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceEE---cc------CCCC------
Confidence 6888999999999888877654432 244454443 34333333222223334444321 10 0001
Q ss_pred EechHHHH-HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhCCCceEEEecccc
Q 005436 146 FLTDGVLL-REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (697)
Q Consensus 146 v~T~~~Ll-~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ii~~SAT~ 206 (697)
.|..+. +.+.. ....+++++|||-+-....+.++...+.+......++.-++.+.|+.
T Consensus 167 --dp~~i~~~al~~-~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEK-FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHH-HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHH-HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 111121 11110 00146899999998733333334333322221235666677777765
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.87 E-value=0.064 Score=49.51 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++.++|+||+||||||++-.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999999998876654
No 180
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.70 E-value=0.058 Score=52.48 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=31.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.|++|+|||+++-+++.+.....+..+++++-.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 446789999999999999888887765443344567777643
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.66 E-value=0.064 Score=55.92 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|+|||||||||++..++........+.++++-.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 567789999999999999998877654322224555555444
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.59 E-value=0.15 Score=58.65 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.7
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.||||+|||+++-.+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999966654443
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.59 E-value=0.1 Score=54.23 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+.+--.+..++.++|+|||||||||++..++.... .....|.+--+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCc
Confidence 34445677899999999999999999887765432 22334555433
No 184
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.14 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
-.+-+++.||+|+|||+++..+..+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 34789999999999996666555443
No 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.59 E-value=0.11 Score=56.52 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+-..+..+.+++|+|||||||||++-.++..
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344556778889999999999999998766543
No 186
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.43 E-value=0.065 Score=53.80 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=37.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcccc-CCCeEEEEECccHHHHHHHHHHHHHHhCCc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~ 122 (697)
..+ .+.|.||+|+|||+++.+++...... .+++++++.....+... .++.+|..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd 81 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVD 81 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCC
Confidence 345 78999999999999888887765432 25678998877655332 24555654
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.38 E-value=0.06 Score=57.19 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=23.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv 100 (697)
.+++++|++|+||||++..+...... .+.+++++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 37889999999999888776654432 23444444
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.23 E-value=0.18 Score=53.28 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=27.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
..+..++|+|||||||||++..++..... ..+.++++-.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEeccc
Confidence 34668999999999999998877654432 24455554433
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.22 E-value=0.08 Score=49.78 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+..+.+.||+||||||++-.+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 346788999999999999988876543
No 190
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.18 E-value=0.071 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++.++|+||+||||||++-.+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999999998876543
No 191
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.13 E-value=0.46 Score=50.38 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=58.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE-ECccHHHHHHHHHHHHHHhCCcceeEEeeEeecCCcCCCCCceE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv-~p~r~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~I 144 (697)
.+++++|++|+||||.+..+........+.+++++ +-+.+-++...........++.+.. +. . .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~~---------~-~--- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--SD---------V-G--- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--CC---------S-S---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--CC---------C-C---
Confidence 47788899999999888776654433214455433 3343333332222234444443211 00 0 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hCCCceEEEecccc
Q 005436 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (697)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~ii~~SAT~ 206 (697)
.+|..++..........++++||||=+- +....+.+...+..+.. ..++.-++.+.|+.
T Consensus 166 --~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 --QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp --SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1333332221110001468999999975 32222233333333332 24444444456653
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.04 E-value=0.16 Score=51.11 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=28.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE-CccHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAV 108 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~-p~r~l~~ 108 (697)
.+..+.+.||+||||||++..+...... .++++.+.. .+.+.++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a 143 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA 143 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhH
Confidence 3568889999999999988876654332 345554443 4444443
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.01 E-value=0.08 Score=51.51 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
.+..++.+.|.||+||||||++-.++.......+...+++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 456889999999999999998887763222112334455543
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.01 E-value=0.16 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+++.||+|+|||+++-.+..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999777665544
No 195
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.99 E-value=0.1 Score=49.61 Aligned_cols=40 Identities=25% Similarity=0.115 Sum_probs=30.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
-+..+..++|.||+|+||||++-+++. ..+.+++++....
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCC
Confidence 355788999999999999988888776 2355677776443
No 196
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.98 E-value=0.19 Score=57.34 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH---hccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 50 Pi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~---~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
.+.+.|.+++... +..++|.|+.|||||+.+-.-+. ........+++++|.|+..+. ++.+|+....+
T Consensus 11 ~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~-Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR-EMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH-HHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH-HHHHHHHHHhc
Confidence 3667788877653 46689999999999965543322 211113356888998887765 55666666543
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.87 E-value=0.11 Score=52.18 Aligned_cols=46 Identities=20% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
.+.-.+..++.++|.||+|+||||++-+++.......+..++++..
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3444567889999999999999998887766544333436666654
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.11 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+-+++.||+|||||.++-.+..+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999997666555443
No 199
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.81 E-value=0.19 Score=46.19 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 54 YRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 54 ~q~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+.+.+.+.. ...++++||+|+|||+++-.+...
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34455555543 378999999999999887665543
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.80 E-value=0.14 Score=49.44 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=30.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~ 103 (697)
+..+..+.|.||+|+||||++-+++...... .+..++++.-.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 4578899999999999999988887643322 13556777644
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.69 E-value=0.11 Score=49.31 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..++++||+||||||++-.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35788999999999999988876654
No 202
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.66 E-value=0.12 Score=50.11 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=30.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
+..+..++|.||+|+|||+++-+++.... ..+.+++++.-..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 61 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC
Confidence 45788999999999999988777765543 2355677776543
No 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.66 E-value=0.12 Score=52.74 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=25.8
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 57 ~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+--.+..++.+.|+|||||||||++-.++...
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344456789999999999999999888665443
No 204
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.58 E-value=0.12 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++.++|+||+|+||||++-.++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 6788999999999999988877654
No 205
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=91.56 E-value=0.16 Score=61.74 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
...+.+.|.+++..- +++++|.|..|||||+.+-.-+...... ...+++++|.|++.+. .+.+++...+
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~-e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAA-EMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHH-HHHHHHHHHH
Confidence 456778888887654 7789999999999996655433222111 2346788888877765 5555555433
No 206
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.40 E-value=0.12 Score=48.93 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++.+.|.||+||||||++-.+.-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788999999999999999988876543
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.19 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999997766555443
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.40 E-value=0.1 Score=49.88 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.|+||+||||||++-.+....
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678899999999999999988776543
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.32 E-value=0.18 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....+++.||+|+|||+++-.+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999777655443
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.23 E-value=0.085 Score=48.97 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+..+..+++.||.||||||++-.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 356778899999999999998886654
No 211
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.09 E-value=0.072 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQ 84 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~ 84 (697)
..++.+.+.||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678899999999999998885
No 212
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.09 E-value=0.2 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=24.1
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 444555543 578999999999999887766554
No 213
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=91.04 E-value=0.84 Score=45.85 Aligned_cols=110 Identities=10% Similarity=-0.050 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccccccC----
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT---- 350 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e~Gvd---- 350 (697)
.+.++|||+...+...-+.+++.. .++....+.|.....+++ . .+....+.+.|....-|+|
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 567899999998887777666643 378889999985543322 1 2345667676776666675
Q ss_pred -CCCeEEEEecCcccceeecCCCCcccccccccCH-HhHHHhhcccC--CCCCcEEEEccChhHhhh
Q 005436 351 -LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK-ASARQRAGRAG--RVRPGKCYRLYTEEYFVK 413 (697)
Q Consensus 351 -ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~~S~-~~~~Qr~GRaG--R~~~G~~~~l~~~~~~~~ 413 (697)
.-..+.||- ||+.-+. .+. -+++.|+-|.| ..++=.+|||++....+.
T Consensus 190 nl~~aD~VI~--------~DsdwNp-------~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 190 SKARFDMLIC--------LDTTVDT-------SQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCSCCSEEEE--------CSTTCCT-------TSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cCCCCCEEEE--------ECCCCCC-------CChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 456667775 5544332 221 22333344442 234557999998766554
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.95 E-value=0.13 Score=48.37 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+..+++.||+||||||++-.+...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999988766543
No 215
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.91 E-value=0.24 Score=51.06 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE-CccHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLA 107 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~-p~r~l~ 107 (697)
+..+.++||+||||||++..+...... .++++.+.. .+.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~ 199 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAA 199 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccc
Confidence 457889999999999988876654332 345555443 444444
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.23 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+-+++.||+|||||+++-.+..+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999997766555443
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.37 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+-+++.||+|+|||.++-.+..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 3679999999999996665554443
No 218
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.76 E-value=0.13 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
++.+.|.||+||||||++-.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999998877654
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.61 E-value=0.22 Score=62.21 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=33.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
+..+.++++.||+|+|||+++-+++.+.. ..+.+++++...-.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHA 1466 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccc
Confidence 34589999999999999988888877654 34667788776643
No 220
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.56 E-value=0.16 Score=48.54 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..++.++|+||.||||||++-.+....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35678999999999999999988766543
No 221
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.38 E-value=0.14 Score=51.43 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=25.3
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+--.+..++.+.|+||+||||||++-.++...
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33445688999999999999999988766543
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.20 E-value=0.18 Score=47.26 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+++.|++||||||+...+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567889999999999998887766443
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.15 E-value=0.25 Score=49.81 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=26.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
.+..+.+.||+||||||++..+...... .++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 3578999999999999998877654432 345554443
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.01 E-value=0.72 Score=53.72 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=23.3
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 56 ~~i~~~l~~--~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.+.. ..+++++||+|+|||+++-.+...
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 344554443 357999999999999877766543
No 225
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.57 E-value=0.25 Score=47.14 Aligned_cols=43 Identities=33% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~ 103 (697)
-+..++.+.|.||+||||||++-.++...... ..+..+++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 35678899999999999999988876533221 13446666554
No 226
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.55 E-value=0.27 Score=50.10 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=31.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccC-----CCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~-----~~~~Ivv~p~r 104 (697)
+..+..++|.||+|+|||+++.+++....... +++++++.-..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45678999999999999988888876643221 45778877554
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.55 E-value=0.17 Score=47.62 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+..++++||+||||||++-.+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567889999999999999887765543
No 228
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.54 E-value=0.12 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
+..+..+.|.||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999887665
No 229
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.51 E-value=0.18 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+-+||+||.|+||||++-.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999887766543
No 230
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.19 E-value=0.28 Score=48.71 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=30.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcccc---------CCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA---------DGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~---------~~~~~Ivv~p~r 104 (697)
+..+..++|.||+|+||||++-+++...... .++++++++..-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 6688999999999999999888776533211 134567776543
No 231
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.11 E-value=0.4 Score=54.85 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC-ccccccCCCCe
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEGI 354 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~-i~e~Gvdip~v 354 (697)
+.+++|.+|++.-+.+.++.+.+.+.. .++.+..+||+++..++..+++.+.+|..+|+|+|. .+...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 568999999999999999988877632 267899999999999999888888889999999996 45556788888
Q ss_pred EEEE
Q 005436 355 VYVV 358 (697)
Q Consensus 355 ~~VI 358 (697)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8876
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.06 E-value=0.18 Score=48.67 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35788999999999999999886653
No 233
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.82 E-value=0.23 Score=47.29 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+.++++|.||+||||+|+...+....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456788999999999999988776654
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.78 E-value=0.44 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+++.||+|+|||+++-.+..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999777655544
No 235
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.75 E-value=0.62 Score=43.21 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=26.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
....++|..++|.||||.+.-..... ...+.+++++.-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA-~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA-VGHGKNVGVVQFI 65 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEee
Confidence 45678999999999998776555543 3355666666433
No 236
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.71 E-value=0.2 Score=45.06 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.0
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..++.+.+.||.||||||++-.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 678899999999999999988776544
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.69 E-value=0.22 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=18.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.++.++|+||||||||++...+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999977665543
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.66 E-value=0.31 Score=49.40 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
-++++--+..+..++|.|++|+|||+++.+++..... .+.++++++-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE 105 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE 105 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC
Confidence 3445555778899999999999999888887765543 33567777644
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.56 E-value=0.28 Score=45.94 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..++|.||.||||||++-.+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999988876543
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.56 E-value=0.24 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...++|+||||||||++.-.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457889999999999777655443
No 241
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.51 E-value=0.3 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+.++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999998887765443
No 242
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.42 E-value=0.26 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++|.|+.||||||++-.+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999988766544
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.32 E-value=0.25 Score=44.67 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQY 85 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~ 85 (697)
..++++|++||||||+.-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988866
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.27 E-value=0.4 Score=49.23 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=31.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECcc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPR 104 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~r 104 (697)
+..+..++|.||+|+|||+++.+++...... .+++++++.-..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3456889999999999998888877764331 245778887654
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.13 E-value=0.23 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..+.|.||+||||||++-.+...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999988766443
No 246
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.11 E-value=0.23 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999887654
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.07 E-value=0.25 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+..++|.||||+|||+++..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999977766543
No 248
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.00 E-value=0.3 Score=47.76 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++|+|||||||||+...+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999887766543
No 249
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.99 E-value=0.34 Score=51.75 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHH-HHHhCCc
Q 005436 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGVK 122 (697)
Q Consensus 56 ~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~-~~~~~~~ 122 (697)
++++.-+..+..++|.|++|+|||+++-+++.......+.++++++-.- ...++..|+ +...++.
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMCSEARID 256 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHHHHTTCC
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHHHcCCC
Confidence 4444456678999999999999998888877765443455677776532 223444443 4444443
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.82 E-value=0.24 Score=49.07 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999999886654
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.80 E-value=0.33 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+++.|+.||||||+...+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999988776543
No 252
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.62 E-value=0.41 Score=50.17 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~ 105 (697)
..+.+++|.|+||||||+++-.++... ...+.+++++=|...
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCcC
Confidence 367789999999999998887666544 234566666665543
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.59 E-value=0.25 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999886643
No 254
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.55 E-value=0.38 Score=46.02 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.....+++.|++||||||++-.+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999988766543
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.46 E-value=0.37 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.++|.|+.||||||+...+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999988876544
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.42 E-value=0.37 Score=43.93 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++++|+.||||||+.-.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999998887665443
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.41 E-value=0.35 Score=44.37 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+.+.||.||||||++-.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988766543
No 258
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.28 E-value=0.34 Score=51.62 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=27.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
.+.+++|.|+||||||+.+..++... ...+..+|++=|-.+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCch
Confidence 45789999999999997765554433 2234555555555444
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.27 E-value=0.33 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+||||||||++.-.+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999877665543
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.18 E-value=0.25 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788899999999999999887643
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.16 E-value=0.28 Score=47.77 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998876543
No 262
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.15 E-value=0.3 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999887654
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.14 E-value=0.29 Score=47.07 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999998876543
No 264
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.11 E-value=0.21 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|+||+||||||++-.+..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHc
Confidence 35789999999999999999876654
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.10 E-value=0.27 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..+++.||.||||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999998887753
No 266
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.05 E-value=0.43 Score=48.68 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHH
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~ 114 (697)
-++++.-+..+..++|.|++|+|||+++.+++..... .+.++++++-. ....++..|
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlE--ms~~ql~~R 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLE--MSAEQLALR 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESS--SCHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC--CCHHHHHHH
Confidence 3444555678899999999999999888877765543 45667777643 333344444
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.04 E-value=0.28 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..+++.|+.||||||+...+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999988876543
No 268
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.01 E-value=0.48 Score=43.88 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+..+++.|+.||||||+...+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566789999999999999888765443
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.98 E-value=0.49 Score=43.94 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=22.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+.....+++.|++||||||+...+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566789999999999999887665543
No 270
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.92 E-value=0.33 Score=44.14 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+..++++|+.||||||++-.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999998876654
No 271
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.89 E-value=0.48 Score=48.24 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+.+..++..+..+++.||+|+|||+++-.+...
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344556666777889999999999999777655443
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.87 E-value=0.3 Score=47.44 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788899999999999999887654
No 273
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.86 E-value=0.59 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999777665544
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.85 E-value=0.32 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=20.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..+.|.||+||||||++-.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35567889999999999988766543
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.82 E-value=0.32 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999887654
No 276
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.79 E-value=0.3 Score=47.92 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999998876543
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.76 E-value=0.4 Score=45.17 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++++.||+||||+|+...+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999998877654
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.74 E-value=0.44 Score=44.51 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...+..+.|.||.||||||++-.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999998887665443
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.74 E-value=0.31 Score=48.08 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 457899999999999999998866543
No 280
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.68 E-value=0.37 Score=51.39 Aligned_cols=47 Identities=15% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEEC
Q 005436 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (697)
Q Consensus 55 q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p 102 (697)
-++++.-+..+..++|.|++|+|||+++.+++...... +.++++++-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 34455556778999999999999998888887765443 556777754
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.67 E-value=0.31 Score=47.81 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999886653
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.66 E-value=0.42 Score=49.17 Aligned_cols=40 Identities=35% Similarity=0.363 Sum_probs=28.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccc--cC---CCeEEEEEC
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGW--AD---GGRVIACTQ 102 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~--~~---~~~~Ivv~p 102 (697)
..+..+.|.||+||||||++-+++..... .. ++++|++.-
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 46688999999999999998887765421 12 256677654
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.65 E-value=0.39 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|++||||||+.-.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999998876654
No 284
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.63 E-value=0.32 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999886653
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.62 E-value=0.31 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999886654
No 286
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.57 E-value=0.44 Score=48.99 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECcc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r 104 (697)
-+..+..++|.||+|+||||++-+++..... .+++++++.-..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 3456789999999999999888877765432 355677777543
No 287
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.44 E-value=0.54 Score=49.20 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcccc-----CCCeEEEEECc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~-----~~~~~Ivv~p~ 103 (697)
..+..+.|.||+||||||++-+++...... .+++++++.-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 357899999999999999888776543221 23567777543
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.41 E-value=0.34 Score=47.47 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999886653
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.36 E-value=0.34 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 35788999999999999999886653
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.35 E-value=0.39 Score=43.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....++++|++||||||+...+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4577999999999999888766544
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.15 E-value=0.51 Score=45.76 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
....+++.||.||||||+...+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999988776543
No 292
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.13 E-value=0.41 Score=52.07 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
..-++++.-+..+..++|.|++|+|||+++.+++.......+.++++++--
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 334555555677899999999999999998888877654335567777643
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.10 E-value=0.42 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++.+.+.||+|+||||++..+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3568899999999999888766543
No 294
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.09 E-value=0.47 Score=43.70 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++++|+.||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999888765543
No 295
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.03 E-value=0.54 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|+||||++-.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999998887765543
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.99 E-value=0.4 Score=44.75 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..+++.|+.||||||+...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998866544
No 297
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.97 E-value=1.2 Score=45.11 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+-|.||+||||||++-.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999998876544
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.95 E-value=0.36 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 357889999999999999998876543
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.94 E-value=0.36 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999887654
No 300
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.91 E-value=0.46 Score=42.16 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l 86 (697)
...+|.||+|||||+++-.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999998876554
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.88 E-value=0.36 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45788999999999999999886654
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.79 E-value=0.37 Score=47.09 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999886654
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.78 E-value=0.31 Score=44.39 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+.|+|++||||||++-.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988776654
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.72 E-value=0.5 Score=43.23 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
...+|+||+|||||+++-.+..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988876654
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.57 E-value=0.84 Score=49.24 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+.+..+++|.|+||||||+.+-.++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999987766554
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.57 E-value=0.38 Score=47.39 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35788999999999999999886643
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.51 E-value=0.36 Score=44.62 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++++|+.||||||+...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999988776543
No 308
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.44 E-value=0.71 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...++++||.||||||++..+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988776543
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.31 E-value=0.47 Score=47.91 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+..+.|.||+||||||++-.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45567899999999999998876644
No 310
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=85.28 E-value=2.1 Score=44.55 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=22.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEE
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv 100 (697)
..+-.+++.|++|+|||+++ ..+........+..+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA-r~ih~~s~r~~~~fv~v 194 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA-RLIHKLSDRSKEPFVAL 194 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH-HHHHHHSTTTTSCEEEE
T ss_pred CCCCCeEEecCCCcCHHHHH-HHHHHhcCCCCCCeEEE
Confidence 34567899999999999544 44444333333444443
No 311
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.24 E-value=0.86 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999887766544
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.13 E-value=0.81 Score=41.48 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+.++|+.||||||++..++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999888776543
No 313
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.12 E-value=0.83 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
....+++.||+|+|||+++-.+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999997766555443
No 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.07 E-value=0.52 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+||||||||++...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999877655443
No 315
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.98 E-value=0.55 Score=47.59 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=19.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.++|+|+.||||||++-.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47899999999999999877654
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.97 E-value=0.61 Score=42.03 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=19.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++++|.|+.||||||+...+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999998887665443
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.87 E-value=0.55 Score=44.34 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++|.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999888765543
No 318
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.87 E-value=0.63 Score=47.93 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=31.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+..+..++|.|++|+|||+++.+++..... .+.+++++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 456789999999999999888877765432 34567777764
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.84 E-value=0.4 Score=45.04 Aligned_cols=26 Identities=35% Similarity=0.202 Sum_probs=20.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+..+.|+|++||||||++..+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566789999999999988876543
No 320
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.83 E-value=0.98 Score=45.27 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+..+++.||+|+|||+++-.+..+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999998777665543
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=84.82 E-value=0.57 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...++|.||.||||||++-.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998876644
No 322
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.82 E-value=0.6 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++|.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988765543
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.74 E-value=0.47 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+|+.||||||++-.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988766544
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.67 E-value=0.57 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+.|.||+||||||++-.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988866544
No 325
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.57 E-value=0.85 Score=43.69 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=21.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999988776554
No 326
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.56 E-value=0.59 Score=47.43 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+..++|.|++|+|||+++.+++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999998888887653
No 327
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.52 E-value=0.56 Score=47.69 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+||||||||++...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999877655443
No 328
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.50 E-value=1.8 Score=48.68 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=40.0
Q ss_pred HHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 58 i~~~l~~~~-~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
+.+.+..+. ..++.|.||||||+.+..++... +.++++++|...+++|-. ..+...++
T Consensus 20 l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~-~el~~~~~ 78 (664)
T 1c4o_A 20 LVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLA-AEFRELFP 78 (664)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHH-HHHHHHCT
T ss_pred HHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHH-HHHHHHCC
Confidence 444555553 56788999999998777665443 245899999999988644 44555554
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.50 E-value=0.45 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhc
Confidence 35788999999999999999887654
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.32 E-value=1.1 Score=40.75 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
-..++++|+.||||||++..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999988877654
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.28 E-value=0.49 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.. +.+.|.||.||||||++-.+.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78899999999999998876543
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.13 E-value=0.8 Score=42.05 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..+++.|+.||||||++..+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999887665443
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.10 E-value=0.6 Score=43.04 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.|++||||||+...+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999988766543
No 334
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=84.07 E-value=0.8 Score=49.45 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 53 ~~q~~i~~~l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
...+.+..++..+.++++.||+|+|||+++-.+..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 33456677778889999999999999966654443
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.06 E-value=0.73 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+..+++.|+.||||||++-.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 55678899999999999988876644
No 336
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.03 E-value=0.57 Score=43.10 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|+.||||||++..+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999988876554
No 337
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=83.89 E-value=0.51 Score=48.47 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999887654
No 338
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.88 E-value=0.56 Score=42.82 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+..++++|+.||||||++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999988776543
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=83.86 E-value=0.61 Score=43.41 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999988766543
No 340
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.83 E-value=0.51 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHH
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l 86 (697)
.+..+..+.|.||+||||||++-+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 46688999999999999999988864
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.77 E-value=0.59 Score=43.85 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+++.|+.||||||++..+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988776544
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.75 E-value=0.49 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..++.+.|.||.||||||++-.+.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 5788999999999999999887654
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.74 E-value=0.54 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 35788999999999999999887754
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.65 E-value=0.76 Score=43.57 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+++.|+.||||||+.-.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988765543
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=83.24 E-value=0.57 Score=48.21 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.+.||.||||||++-.+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 35788999999999999999887654
No 346
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.22 E-value=0.62 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...+++.|+.||||||+...+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988766543
No 347
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.21 E-value=0.7 Score=43.19 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.1
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l 86 (697)
+.+++.||.|+|||+.+..++
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999997765443
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.16 E-value=1.1 Score=41.68 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+.|.|+.||||||++-.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999988776544
No 349
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.13 E-value=5.3 Score=36.32 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHH
Q 005436 48 RLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (697)
Q Consensus 48 ~lPi~~~q~~i~~~l--~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l 106 (697)
.+|-..-|.+....+ ...+..+|.|+-|++|+...-.-+.......|..+.+++|+.+-
T Consensus 32 ~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 32 SVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRS 92 (189)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHH
T ss_pred ccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHH
Confidence 344444555666666 34578999999999999542222233333456778888888655
No 350
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.09 E-value=0.59 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.+.||.||||||++-.+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhc
Confidence 35788999999999999999887654
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.99 E-value=0.59 Score=45.28 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+..+-|.||.||||||++-.+..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677889999999999998876644
No 352
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.81 E-value=0.66 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=17.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+||||||||++.-.+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 46889999999999776655433
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.76 E-value=0.74 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..++++|+.||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999988866543
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.73 E-value=0.72 Score=43.36 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..++++|+.||||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999998876544
No 355
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.72 E-value=0.53 Score=48.26 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.+.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHc
Confidence 35788999999999999999887654
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.70 E-value=0.83 Score=42.57 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+++.|+.||||||+...+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999887766443
No 357
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.70 E-value=0.59 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||+||||||++-.+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 46789999999999999999887654
No 358
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=82.68 E-value=12 Score=37.79 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=34.5
Q ss_pred CCccCCCC--CChHhhcccccCCCChhhHHHHHhhcccCC-hHHHHHHHHHhc
Q 005436 468 GVLDDDAK--LTSPTGFQVAEIPLEPMISKMILSSNELGC-SEEIITISAVLS 517 (697)
Q Consensus 468 gald~~~~--lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c-~~~~~~i~a~ls 517 (697)
|++++++. .| ++|+++|++++++..++.+.....-++ ..+++.+.|.-+
T Consensus 1 ~~~~~~~~l~~t-~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~ 52 (328)
T 3im1_A 1 GAMEATEIISTL-SNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAV 52 (328)
T ss_dssp ---CCCCCCTTS-SSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCG
T ss_pred CCccCCCCccCC-chhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHH
Confidence 67777664 57 689999999999999999998776554 444555555433
No 359
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.61 E-value=1 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.||+|+|||+++-.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999777655443
No 360
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.52 E-value=0.87 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+-+++.||+|+|||.++..+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 458999999999996665555443
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.48 E-value=0.91 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+++.|+.||||||+...+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887665443
No 362
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.47 E-value=0.65 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHc
Confidence 35788999999999999999887654
No 363
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=82.46 E-value=0.61 Score=45.76 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+. ++.+.|.||.||||||++-.+.-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 45 88899999999999999886653
No 364
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=82.38 E-value=0.4 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+..+++.||+|+|||+++.++...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445677899999999999888877665
No 365
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.37 E-value=1.3 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999877766544
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.32 E-value=0.82 Score=44.54 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+..+.|.||+||||||++-.+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999998888766443
No 367
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.32 E-value=0.75 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|+|||+++-.+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 449999999999998887666543
No 368
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.26 E-value=1.1 Score=41.12 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
++|.|++|||||+...++... +.+++|+..-... ..++.++++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~-d~e~~~rI~~h~ 47 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQIL-DDEMAARIQHHK 47 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC-------CHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCC-CHHHHHHHHHHH
Confidence 689999999999888877643 3457888765433 234445555443
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.24 E-value=0.64 Score=48.12 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHc
Confidence 35788999999999999999887654
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.12 E-value=0.97 Score=55.76 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=42.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhCCcce
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~~~~~ 124 (697)
.++.+.|.||.||||||++..++.+.. ..++.++++.+..++... +++..|+++.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~ 1484 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPI-----YARKLGVDID 1484 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHH-----HHHHTTCCGG
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHH-----HHHHcCCCHH
Confidence 468999999999999999988887654 356778899888776443 2566777654
No 371
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.09 E-value=0.74 Score=43.45 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988766543
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.03 E-value=0.69 Score=44.31 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l 86 (697)
.+..+.|.|+.||||||++-.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 56788999999999999887554
No 373
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.93 E-value=0.9 Score=44.19 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++.++|.|+.||||||+...+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999998887665433
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.91 E-value=0.77 Score=42.20 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.|+.||||||+...+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988766544
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.90 E-value=0.72 Score=41.63 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.|+.||||||+...+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999888766543
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.88 E-value=0.71 Score=47.52 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 467899999999999999998866543
No 377
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.85 E-value=1.2 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
....+.+.||+|+||||++-.+.-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 334899999999999999887664
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.84 E-value=0.81 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998866543
No 379
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.81 E-value=0.99 Score=49.28 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=30.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 61 ~l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.+..+..++|.||+|+||||++-+++..... .+.++++++.-
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 3567889999999999999988887655432 34456666643
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=81.68 E-value=0.5 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.++|.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999988765543
No 381
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.67 E-value=0.81 Score=47.33 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.1
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
..+|+|||||||||++-.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68899999999999886554
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.42 E-value=0.84 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|+.||||||+...+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999888766543
No 383
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.37 E-value=0.88 Score=41.27 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+++|.|+.||||||+.-.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999998887665443
No 384
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.36 E-value=1 Score=43.12 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...+++.|++||||||+...+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988766543
No 385
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.32 E-value=1.3 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|+|||+++-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999998777665544
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.19 E-value=0.88 Score=43.33 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988765443
No 387
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.15 E-value=1.3 Score=41.37 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+++|+.|||||+.+-.++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999997765554443
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.15 E-value=0.88 Score=41.86 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|+.||||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998876654
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.07 E-value=0.81 Score=41.75 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.|+.||||||+.-.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999988876544
No 390
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.06 E-value=0.54 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.|.||.||||||++-.+.-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35788999999999999999887654
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.01 E-value=0.91 Score=41.53 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++|+|+.||||||+...+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999888766544
No 392
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.01 E-value=0.92 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..+++.||+|+|||+++-.+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999997776665544
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.98 E-value=1.1 Score=42.33 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..+++.|+.||||||+...+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988765543
No 394
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=80.74 E-value=1.1 Score=48.89 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCccchhhHHHHhcCCCcHHH---HHHHHH-----HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 34 SIGYGYASIEKQRQRLPVYKY---RTAILY-----LVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 34 ~~~~~~~~~~~~r~~lPi~~~---q~~i~~-----~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+|+...+++.+.....|.+-. -.+++. .+.++..+++.|+.||||||++-.+...
T Consensus 330 isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 330 LSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHh
Confidence 455445555555555553222 112222 2446788999999999999887766544
No 395
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=80.73 E-value=1.2 Score=47.52 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHhcCC--EEEEEcCCCChHHHHHHHHHHh
Q 005436 58 ILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 58 i~~~l~~~~--~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+...+..++ .+++.||+|+|||+++-.+...
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 344555554 6999999999999877765544
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.66 E-value=2.2 Score=42.78 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..+.|.||+||||||++-.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568889999999999988766543
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.63 E-value=0.88 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
...++++|+.||||||++-.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999988876654
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.46 E-value=0.99 Score=42.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+.|+|+.||||||+.-.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988776554
No 399
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.25 E-value=0.98 Score=42.21 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.0
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
.+.|.|+.||||||+...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998887664
No 400
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.12 E-value=1 Score=46.73 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+++.||+|+||||++..+...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356789999999999999988766643
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=80.10 E-value=1.9 Score=40.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
++..+++.|+.||||||++..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999998766543
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.05 E-value=1 Score=42.22 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
....+|+||+|+|||+++-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999998876543
No 403
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.97 E-value=0.9 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
....+|+|+||+|||+++-.+.+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999988776543
No 404
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.64 E-value=1 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|+||||++-.+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999998887666543
No 405
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.53 E-value=1.1 Score=49.64 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.++||+||||||++-.+....
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988766543
No 406
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=79.38 E-value=2.4 Score=50.89 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC-ccccccCCCC
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~-i~e~Gvdip~ 353 (697)
.+.+++|.+|++.-+.+.++.+.+.+.. .++.+..+++..+..++..+++.+..|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 4568999999999999999888876532 256788999999999998888888889999999994 5666788899
Q ss_pred eEEEE
Q 005436 354 IVYVV 358 (697)
Q Consensus 354 v~~VI 358 (697)
+++||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98876
No 407
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.36 E-value=1 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
...+.|+|++||||||++-.+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999988765543
No 408
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=79.12 E-value=1.1 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+.+++.||+|||||+++-.+....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 449999999999998887665543
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=79.02 E-value=0.97 Score=42.72 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
+..+.|.|+.||||||++-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999998887654
No 410
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.94 E-value=1.1 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
++.|.||+|+||||++-.+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999988766543
No 411
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=78.93 E-value=2.1 Score=40.06 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=24.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+.+++.|+-|||||||+..+.... ..+..++..-.|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v~~~~eP 38 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREP 38 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH--TTTSCEEEEESS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HCCCCEEEeeCC
Confidence 467889999999999987655433 234455555554
No 412
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=78.71 E-value=2 Score=43.00 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..++.+.+.||+|+||||++-.+. ..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3467889999999999999998877 44
No 413
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.66 E-value=1.9 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=23.1
Q ss_pred HHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 56 TAILYLV--ETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 56 ~~i~~~l--~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+.+++.+ ....++++.||+|+|||+++-.+..
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3455555 3457899999999999977765543
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.58 E-value=1.2 Score=41.42 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..+.|+|++||||||+.-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988776554
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.56 E-value=0.94 Score=48.36 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.9
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 58 i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+--.+..++.+.|.||+||||||++-.+.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4444568899999999999999988876543
No 416
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=78.53 E-value=1.7 Score=44.32 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+..+.+.|++|+||||++..+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999998877643
No 417
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=78.44 E-value=2.1 Score=40.37 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
.+..+++.|+.||||||++..+..... ..+..++..-.|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~~~p 43 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLTREP 43 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEESS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccccCC
Confidence 466789999999999999876654332 123345544444
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.15 E-value=0.94 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
...+++.|++||||||+...+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999887765543
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=77.72 E-value=0.81 Score=42.76 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQY 85 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~ 85 (697)
..+..+++.|++|+||||++-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45667999999999999887644
No 420
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=77.66 E-value=2.4 Score=40.73 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..+++.|+.||||||++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999998866543
No 421
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.34 E-value=1.2 Score=45.96 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.4
Q ss_pred Hhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VET--HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~--~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.. ++.+.|.||+||||||++-.+...
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 456 788999999999999998876554
No 422
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=76.80 E-value=0.96 Score=50.04 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.++||+||||||++-.+..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhc
Confidence 35789999999999999998875544
No 423
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.74 E-value=1.4 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999777655543
No 424
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.56 E-value=2.3 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+.+++.||+|+|||+++-.+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999777655544
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=76.41 E-value=1.3 Score=42.36 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=18.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+..+++.|+.||||||++..+...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999998866543
No 426
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.37 E-value=1.1 Score=49.51 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..|+.+.++||+||||||++-.+...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 357899999999999999998876543
No 427
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=76.21 E-value=1.7 Score=41.14 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999988766544
No 428
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=76.13 E-value=2 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..++.+.+.||+|+||||++-.++-.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc
Confidence 46789999999999999998776643
No 429
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.12 E-value=1.6 Score=38.30 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999988877643
No 430
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.10 E-value=2.5 Score=44.28 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCccc----ccc
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE----TSL 349 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i~e----~Gv 349 (697)
..++.+||.+|++.-+.+.++.+..... .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4567899999999999999999887531 377899999999997777666666677789999996211 124
Q ss_pred CCCCeEEEE
Q 005436 350 TLEGIVYVV 358 (697)
Q Consensus 350 dip~v~~VI 358 (697)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 455667665
No 431
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=75.85 E-value=2.5 Score=39.32 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECc
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~ 103 (697)
+++.|+-|||||||+..+.... ...+..+++.-.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L-~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEECC
Confidence 5788999999999987654322 2234455555544
No 432
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=75.73 E-value=2.2 Score=43.74 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+.|.|++|+||||++-.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999877654
No 433
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=75.69 E-value=1.5 Score=44.78 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l 86 (697)
....+|+||+|+|||+++-.+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998887543
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=75.41 E-value=2 Score=41.10 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
....+.|.||+||||||+...+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999998887665443
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.28 E-value=1.6 Score=40.40 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+.|+|+.||||||+...+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999887765543
No 436
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.15 E-value=1.3 Score=46.58 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHHhcCCE--EEEEcCCCChHHHHHHHHHH
Q 005436 57 AILYLVETHAT--TIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 57 ~i~~~l~~~~~--~ii~apTGsGKT~~lp~~l~ 87 (697)
.+--.+..|.. +.|.||+|+||||++-.+..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34445678888 99999999999999886653
No 437
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.07 E-value=0.97 Score=50.22 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.++||+||||||++-.+...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 457899999999999999998866543
No 438
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.03 E-value=0.83 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.||+|+|||+++-.+...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 355899999999999877766544
No 439
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.03 E-value=1.7 Score=40.14 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|+.|+||||++-.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998877654
No 440
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=75.03 E-value=1.8 Score=38.35 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999998877653
No 441
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=74.92 E-value=1.7 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998877654
No 442
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=74.80 E-value=1.8 Score=44.57 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 59 LYLVETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 59 ~~~l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+-.+..++.+.|.||+|+|||+++.++..
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 33346789999999999999988776544
No 443
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.79 E-value=1.2 Score=49.43 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..++.+.++||+||||||++-.+..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999876554
No 444
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=74.63 E-value=1.8 Score=39.86 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|+.|+||||++-.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998877654
No 445
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.59 E-value=5.4 Score=44.73 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=39.7
Q ss_pred HHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEECccHHHHHHHHHHHHHHhC
Q 005436 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (697)
Q Consensus 58 i~~~l~~~~-~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~p~r~l~~~~~~~~~~~~~~ 120 (697)
+.+.+.++. ..++.|.||||||+.+..++... +.+++++++...+|++-.. .+...++
T Consensus 24 l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~-el~~~~~ 82 (661)
T 2d7d_A 24 LVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYS-EFKEFFP 82 (661)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHH-HHHHHCT
T ss_pred HHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHH-HHHHHcC
Confidence 445555553 56788999999998877665443 2358999999988876443 3455544
No 446
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.54 E-value=3 Score=45.39 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=26.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcccc--CCCeEEEEECcc
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPR 104 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~~~~~~--~~~~~Ivv~p~r 104 (697)
.+..+++|.|.||||||+.+-.++...... ...-.+++.-++
T Consensus 212 ~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 212 AKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 346789999999999997776655533221 222235555555
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=74.45 E-value=1.7 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..+++.|++||||||+...+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876654
No 448
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.37 E-value=1.8 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....+++.||+|+|||+++-.+...
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHh
Confidence 3456999999999999777655543
No 449
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=74.34 E-value=1.9 Score=39.47 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.-.+++.|++|+|||+++-.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999988877654
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=73.59 E-value=2 Score=38.56 Aligned_cols=22 Identities=36% Similarity=0.826 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998877654
No 451
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=73.50 E-value=2.1 Score=37.98 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+++.|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999988776543
No 452
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=73.46 E-value=1.6 Score=44.61 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
-.+..++.+.|.||.|+||||++-.++...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678999999999999999987776553
No 453
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.38 E-value=3.1 Score=40.29 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhccccCCCeEEEEE
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~Ivv~ 101 (697)
..+++.|..|+||||++..+..... .+.++.++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4688899999999998887776554 344554443
No 454
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.30 E-value=21 Score=32.63 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecC-----ccc-cc
Q 005436 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAE-TS 348 (697)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~-----i~e-~G 348 (697)
.+.++||.+|++.-+++.++.+.+... ..++..+..++|+.+..++...+. +..+|+|+|. .+. ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSK----HMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTT----TSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHh----hcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 456799999999999988888877642 223677888999988776554432 3568999996 122 23
Q ss_pred cCCCCeEEEE
Q 005436 349 LTLEGIVYVV 358 (697)
Q Consensus 349 vdip~v~~VI 358 (697)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777766
No 455
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.19 E-value=2.1 Score=37.90 Aligned_cols=22 Identities=18% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999998877654
No 456
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=73.09 E-value=2.2 Score=37.62 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999988776643
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=73.08 E-value=1.7 Score=47.45 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..++.+.|.||.||||||++-.+.-.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999998876643
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.85 E-value=2.2 Score=38.02 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|++|+|||+++-.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999998887753
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=72.83 E-value=1.2 Score=49.35 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..|+.+.|+||+||||||++-.+...
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998876543
No 460
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.81 E-value=2.2 Score=37.65 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999988877643
No 461
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.79 E-value=2.9 Score=54.24 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCcHHHHHH---HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcc-ccCCCeEEEEECccHHHHHH
Q 005436 49 LPVYKYRTA---ILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQA 110 (697)
Q Consensus 49 lPi~~~q~~---i~~~l~~~~~~ii~apTGsGKT~~lp~~l~~~~-~~~~~~~Ivv~p~r~l~~~~ 110 (697)
.|...+... +.+.+..+.-++++||||||||+++-.+..... .......+++..|+++..++
T Consensus 904 ~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~e 969 (2695)
T 4akg_A 904 SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKES 969 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHH
T ss_pred cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHH
Confidence 344444443 445566778899999999999977654432211 11122346677888776543
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=72.70 E-value=2.1 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.714 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999988877643
No 463
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=72.51 E-value=2.2 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.+..+++.||+|+|||+++-.+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999998877655443
No 464
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=72.49 E-value=2.8 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
..++++.||+|+|||+++-.+....
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999998776655443
No 465
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=72.37 E-value=2.3 Score=37.73 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999998887764
No 466
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=72.11 E-value=4.4 Score=48.93 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=31.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccc-----------CCCeEEEEECccHHHHHHHHHHHHHHh
Q 005436 68 TIIVGETGSGKTTQIPQYLKEAGWA-----------DGGRVIACTQPRRLAVQAVASRVAEEM 119 (697)
Q Consensus 68 ~ii~apTGsGKT~~lp~~l~~~~~~-----------~~~~~Ivv~p~r~l~~~~~~~~~~~~~ 119 (697)
.+|.|.-|||||+.+...+...... ...++++||=|++.++ ++.+|+...+
T Consensus 19 ~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~-EMr~RI~~~L 80 (1180)
T 1w36_B 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA-ELRGRIRSNI 80 (1180)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHH-HHHHHHHHHH
Confidence 5999999999995554433322211 1235788888876655 5555555443
No 467
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=72.07 E-value=2.3 Score=38.03 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999988877643
No 468
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=72.00 E-value=3.2 Score=42.36 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
++..+.+.|++|+||||++..+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999988876544
No 469
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=71.83 E-value=2.1 Score=39.23 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
...+++.|++|+|||+++-.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999998887653
No 470
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.76 E-value=2.6 Score=40.84 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+.|.|+.||||||+.-.+...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999887765543
No 471
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=71.64 E-value=2.4 Score=37.41 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|++|+|||+++-.++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999998887764
No 472
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.61 E-value=1.8 Score=43.74 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
....+|+||+|||||+++-.+..
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 34899999999999988876554
No 473
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.58 E-value=2.4 Score=37.56 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999998877654
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=71.55 E-value=2.3 Score=39.45 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+.|.|+.||||||+...+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999888766543
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=71.49 E-value=2.8 Score=37.54 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+...+++.|++|+|||+++-.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999998877643
No 476
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.37 E-value=3.4 Score=47.33 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=24.1
Q ss_pred HHHHHHHHh--cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 55 RTAILYLVE--THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 55 q~~i~~~l~--~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+.+++.+. ...++++.||+|+|||+++-.+...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 344555553 4568999999999999777655443
No 477
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.34 E-value=15 Score=34.11 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCc-c-----cccc
Q 005436 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-A-----ETSL 349 (697)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i-~-----e~Gv 349 (697)
..++||.+|++.-+.++++.+.+... ..++..+..++|+.+..++...+. .+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSK----YMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTT----TSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHh----hCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 34799999999999998888876632 223678889999998776655443 245689999952 1 2345
Q ss_pred CCCCeEEEE
Q 005436 350 TLEGIVYVV 358 (697)
Q Consensus 350 dip~v~~VI 358 (697)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677777766
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=71.30 E-value=2.2 Score=41.04 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..+++.|+.||||||++..+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999998866544
No 479
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=71.28 E-value=2.2 Score=38.96 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+++.|++|+|||+++-.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999988877643
No 480
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=71.19 E-value=2.2 Score=38.38 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 005436 65 HATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
+..+++.|++|+|||+++-.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999998887764
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.09 E-value=1.3 Score=53.95 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
+..|+.+-|+|+|||||||++-.+...
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 357899999999999999988866543
No 482
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.05 E-value=2.1 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.9
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 005436 66 ATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l 86 (697)
..+.|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998887665
No 483
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.96 E-value=4.4 Score=53.18 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHH---HhcCCEEEEEcCCCChHHHHHHHHHHhccccCC-CeEEEEECccHHHHHHH
Q 005436 49 LPVYKYRTAILYL---VETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRRLAVQAV 111 (697)
Q Consensus 49 lPi~~~q~~i~~~---l~~~~~~ii~apTGsGKT~~lp~~l~~~~~~~~-~~~Ivv~p~r~l~~~~~ 111 (697)
-|...+..++++. +..+.-++++||||||||+..-.+........+ ....++..|+++...++
T Consensus 887 ~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eL 953 (3245)
T 3vkg_A 887 VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQL 953 (3245)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhh
Confidence 3555565555444 455677999999999999776654432221112 23467889998876543
No 484
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=70.86 E-value=2.6 Score=39.65 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
.-..+++.|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678999999999999988877654
No 485
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=70.83 E-value=2.1 Score=45.35 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=24.4
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 60 ~~l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
-.+..++.+.|.||.||||||++-.++...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345678999999999999999987766544
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=70.80 E-value=2.5 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~ 87 (697)
.+++.|++|+|||+++-.+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999887753
No 487
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.79 E-value=2.5 Score=39.63 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 005436 65 HATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 65 ~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
...+++.|++|+|||+++-.+...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999988877654
No 488
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=70.43 E-value=2.7 Score=37.21 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999988877653
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=70.39 E-value=1.9 Score=42.11 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 005436 64 THATTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l 86 (697)
+...+++.|+.||||||++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999987554
No 490
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=70.39 E-value=2.5 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
..+.|.||+||||||++-.+...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68899999999999998876543
No 491
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=70.37 E-value=3.5 Score=41.16 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 005436 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (697)
Q Consensus 63 ~~~~~~ii~apTGsGKT~~lp~~l~ 87 (697)
..++.+.+.||+|+||||++-.+.-
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 4578899999999999998876653
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=70.32 E-value=2.6 Score=40.38 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 005436 66 ATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 66 ~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
-.+++.|++|+|||+++-.++..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999988777643
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=70.23 E-value=2.8 Score=40.06 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+..+.|.|+.||||||+...+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999887765543
No 494
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.97 E-value=19 Score=33.48 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=46.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhccCCCCCCCcEEEEecCc------ccc
Q 005436 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI------AET 347 (697)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~kilvaT~i------~e~ 347 (697)
..+..+||.+|++.-+.++++.+...... .+..+..++|+.+..++...+. ..+|+|+|.- ...
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhC
Confidence 34568999999999999998888776421 2567888999887666554432 2679999952 133
Q ss_pred ccCCCCeEEEE
Q 005436 348 SLTLEGIVYVV 358 (697)
Q Consensus 348 Gvdip~v~~VI 358 (697)
.+++..+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 55667777766
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.93 E-value=1.6 Score=53.33 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=23.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 005436 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (697)
Q Consensus 62 l~~~~~~ii~apTGsGKT~~lp~~l~~~ 89 (697)
+..|+.+.|+||+||||||++-.++...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3578999999999999999998776554
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=69.87 E-value=2.8 Score=37.35 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=17.4
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
.+++.|++|+|||+++-.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999998887665
No 497
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=69.84 E-value=2.8 Score=37.16 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=17.1
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 005436 67 TTIIVGETGSGKTTQIPQYL 86 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l 86 (697)
.+++.|++|+|||+++-.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998887664
No 498
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=69.70 E-value=2.7 Score=37.63 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 005436 67 TTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~ 88 (697)
.+++.|++|+|||+++-.++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999998877643
No 499
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=69.68 E-value=4.4 Score=38.40 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhccccCCCeE-EEEECc
Q 005436 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQP 103 (697)
Q Consensus 67 ~~ii~apTGsGKT~~lp~~l~~~~~~~~~~~-Ivv~p~ 103 (697)
++++.++.|+||||.+......... .+.++ ++.+-|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence 5889999999999886655544322 34444 344433
No 500
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=69.59 E-value=2.7 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 005436 64 THATTIIVGETGSGKTTQIPQYLKE 88 (697)
Q Consensus 64 ~~~~~ii~apTGsGKT~~lp~~l~~ 88 (697)
....++++|+.||||||++..+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999988766543
Done!