Query 005439
Match_columns 696
No_of_seqs 398 out of 3085
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-134 3E-139 1141.3 65.2 688 6-695 3-701 (868)
2 PLN02270 phospholipase D alpha 100.0 7E-121 1E-125 1031.7 60.2 617 13-690 4-632 (808)
3 PLN02352 phospholipase D epsil 100.0 1E-114 3E-119 979.6 57.0 539 80-690 36-582 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 6E-106 1E-110 903.4 46.2 610 8-686 67-688 (887)
5 PLN02866 phospholipase D 100.0 8.7E-77 1.9E-81 682.4 40.0 407 203-686 321-855 (1068)
6 PRK12452 cardiolipin synthetas 100.0 5.3E-40 1.1E-44 370.6 29.3 286 203-668 131-417 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.4E-38 5.2E-43 356.5 30.1 285 203-668 107-391 (483)
8 PRK11263 cardiolipin synthase 100.0 1.5E-36 3.1E-41 333.6 29.4 280 207-674 3-283 (411)
9 COG1502 Cls Phosphatidylserine 99.9 8.5E-26 1.9E-30 252.7 28.4 287 209-668 57-345 (438)
10 PHA03003 palmytilated EEV memb 99.9 7.9E-26 1.7E-30 246.6 27.0 283 241-685 30-312 (369)
11 PHA02820 phospholipase-D-like 99.9 4.6E-25 9.9E-30 243.7 26.1 283 241-678 25-309 (424)
12 PRK09428 pssA phosphatidylseri 99.9 1.5E-23 3.2E-28 232.4 26.8 275 209-631 22-302 (451)
13 cd04015 C2_plant_PLD C2 domain 99.9 1.1E-22 2.4E-27 196.2 16.5 157 12-180 2-158 (158)
14 cd04016 C2_Tollip C2 domain pr 99.8 2.6E-19 5.7E-24 164.6 14.6 117 17-179 2-121 (121)
15 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.5E-18 9.8E-23 156.6 15.5 120 18-181 1-121 (121)
16 cd08379 C2D_MCTP_PRT_plant C2 99.8 4.7E-18 1E-22 157.4 14.6 114 19-175 2-125 (126)
17 cd04013 C2_SynGAP_like C2 doma 99.8 8.9E-18 1.9E-22 158.8 16.5 128 12-186 6-145 (146)
18 cd08682 C2_Rab11-FIP_classI C2 99.8 5.3E-18 1.2E-22 157.4 13.5 117 19-178 1-126 (126)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.8E-17 3.9E-22 152.8 14.1 99 80-179 22-121 (121)
20 cd08400 C2_Ras_p21A1 C2 domain 99.7 3.7E-17 8.1E-22 151.8 15.8 121 16-182 3-125 (126)
21 cd08681 C2_fungal_Inn1p-like C 99.7 3.3E-17 7.1E-22 150.1 11.6 116 17-179 1-118 (118)
22 cd08678 C2_C21orf25-like C2 do 99.7 1.1E-16 2.3E-21 148.7 15.1 105 80-184 18-124 (126)
23 cd04022 C2A_MCTP_PRT_plant C2 99.7 6.3E-17 1.4E-21 150.4 13.5 119 18-180 1-126 (127)
24 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.2E-16 2.7E-21 152.7 14.3 123 18-183 1-135 (150)
25 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.8E-16 3.8E-21 146.3 12.8 97 80-179 17-119 (121)
26 cd04014 C2_PKC_epsilon C2 doma 99.7 4.6E-16 1E-20 145.5 15.2 127 15-182 2-131 (132)
27 cd08376 C2B_MCTP_PRT C2 domain 99.7 5.6E-16 1.2E-20 141.4 15.4 113 18-180 1-115 (116)
28 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.3E-16 1.1E-20 142.1 14.8 117 17-179 1-118 (119)
29 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.6E-16 9.9E-21 143.4 14.2 117 19-178 2-120 (121)
30 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.4E-16 7.4E-21 146.4 13.4 120 18-180 1-133 (133)
31 cd04036 C2_cPLA2 C2 domain pre 99.7 4.6E-16 1E-20 142.9 13.6 113 19-179 2-117 (119)
32 cd04044 C2A_Tricalbin-like C2 99.7 3.9E-16 8.5E-21 143.9 13.0 120 17-181 2-124 (124)
33 cd04024 C2A_Synaptotagmin-like 99.7 6.8E-16 1.5E-20 143.2 13.7 120 17-179 1-128 (128)
34 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1E-15 2.3E-20 140.4 13.6 120 17-179 1-121 (121)
35 cd08381 C2B_PI3K_class_II C2 d 99.7 6E-16 1.3E-20 142.9 11.9 105 12-159 8-121 (122)
36 cd08677 C2A_Synaptotagmin-13 C 99.7 6.3E-16 1.4E-20 140.5 10.8 101 14-159 11-118 (118)
37 cd04028 C2B_RIM1alpha C2 domai 99.6 1.4E-15 3.1E-20 144.2 13.4 107 13-161 25-138 (146)
38 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 2.1E-15 4.5E-20 139.3 13.7 118 18-178 1-123 (123)
39 cd08375 C2_Intersectin C2 doma 99.6 3E-15 6.5E-20 140.9 14.5 114 17-179 15-135 (136)
40 cd08395 C2C_Munc13 C2 domain t 99.6 1.5E-15 3.3E-20 139.4 11.8 99 18-159 1-110 (120)
41 cd08685 C2_RGS-like C2 domain 99.6 1E-15 2.3E-20 140.7 10.4 105 12-159 7-119 (119)
42 KOG1030 Predicted Ca2+-depende 99.6 1.1E-15 2.3E-20 144.4 9.5 97 14-153 3-100 (168)
43 cd04046 C2_Calpain C2 domain p 99.6 1.1E-14 2.3E-19 135.3 15.7 122 16-182 2-124 (126)
44 cd08373 C2A_Ferlin C2 domain f 99.6 7.7E-15 1.7E-19 136.3 14.7 103 80-185 15-121 (127)
45 cd08385 C2A_Synaptotagmin-1-5- 99.6 4.7E-15 1E-19 137.0 11.8 103 15-159 14-122 (124)
46 cd08387 C2A_Synaptotagmin-8 C2 99.6 4.7E-15 1E-19 137.1 11.5 102 16-159 15-122 (124)
47 cd04017 C2D_Ferlin C2 domain f 99.6 1.4E-14 3.1E-19 136.1 14.3 119 18-183 2-135 (135)
48 cd08688 C2_KIAA0528-like C2 do 99.6 4.2E-15 9E-20 134.7 10.2 100 19-161 1-109 (110)
49 cd04050 C2B_Synaptotagmin-like 99.6 8.4E-15 1.8E-19 131.5 12.0 96 19-159 2-100 (105)
50 cd04029 C2A_SLP-4_5 C2 domain 99.6 7.6E-15 1.6E-19 136.1 11.8 104 15-159 13-124 (125)
51 cd08393 C2A_SLP-1_2 C2 domain 99.6 6E-15 1.3E-19 136.8 11.0 102 16-159 14-124 (125)
52 cd04043 C2_Munc13_fungal C2 do 99.6 2.4E-14 5.3E-19 132.6 15.0 115 18-182 2-123 (126)
53 cd08690 C2_Freud-1 C2 domain f 99.6 2.2E-14 4.8E-19 137.1 14.9 100 80-182 25-139 (155)
54 cd08394 C2A_Munc13 C2 domain f 99.6 1.2E-14 2.6E-19 133.5 12.3 97 17-160 2-100 (127)
55 cd04027 C2B_Munc13 C2 domain s 99.6 1.5E-14 3.2E-19 134.6 13.1 114 18-177 2-127 (127)
56 cd04010 C2B_RasA3 C2 domain se 99.6 9.3E-15 2E-19 139.2 11.4 82 80-161 19-122 (148)
57 cd08382 C2_Smurf-like C2 domai 99.6 1.7E-14 3.7E-19 133.4 12.8 116 19-177 2-122 (123)
58 cd08392 C2A_SLP-3 C2 domain fi 99.6 8.4E-15 1.8E-19 136.4 10.6 102 16-159 14-127 (128)
59 cd04051 C2_SRC2_like C2 domain 99.6 1E-14 2.2E-19 135.0 10.5 113 18-175 1-125 (125)
60 cd04045 C2C_Tricalbin-like C2 99.6 1.8E-14 3.9E-19 132.7 12.0 104 17-163 1-105 (120)
61 cd08680 C2_Kibra C2 domain fou 99.6 1E-14 2.2E-19 134.9 10.4 103 15-159 12-124 (124)
62 cd08383 C2A_RasGAP C2 domain ( 99.6 4.6E-14 1E-18 128.8 14.0 96 80-179 18-117 (117)
63 cd04030 C2C_KIAA1228 C2 domain 99.6 2.1E-14 4.5E-19 133.1 11.3 101 17-159 16-126 (127)
64 cd04031 C2A_RIM1alpha C2 domai 99.5 2.9E-14 6.2E-19 131.8 11.4 101 16-159 15-124 (125)
65 cd08521 C2A_SLP C2 domain firs 99.5 2.3E-14 5E-19 132.0 10.7 103 15-159 12-123 (123)
66 cd04041 C2A_fungal C2 domain f 99.5 1.7E-14 3.8E-19 130.8 9.3 98 17-159 1-106 (111)
67 cd08388 C2A_Synaptotagmin-4-11 99.5 6.5E-14 1.4E-18 130.5 12.9 103 16-159 15-126 (128)
68 cd08386 C2A_Synaptotagmin-7 C2 99.5 6.7E-14 1.4E-18 129.5 12.2 102 16-159 15-123 (125)
69 cd00138 PLDc Phospholipase D. 99.5 1.3E-13 2.9E-18 134.8 15.0 145 241-459 20-169 (176)
70 cd04039 C2_PSD C2 domain prese 99.5 5.2E-14 1.1E-18 127.1 11.0 96 17-151 1-99 (108)
71 cd04040 C2D_Tricalbin-like C2 99.5 7.3E-14 1.6E-18 127.2 12.0 100 19-160 1-102 (115)
72 cd04052 C2B_Tricalbin-like C2 99.5 7.4E-14 1.6E-18 126.7 11.8 100 77-182 10-111 (111)
73 cd08389 C2A_Synaptotagmin-14_1 99.5 8.2E-14 1.8E-18 129.0 11.8 101 16-159 15-122 (124)
74 cd04018 C2C_Ferlin C2 domain t 99.5 9E-14 2E-18 132.8 11.9 116 18-162 1-126 (151)
75 cd08407 C2B_Synaptotagmin-13 C 99.5 1.9E-14 4E-19 135.5 7.1 109 15-165 13-129 (138)
76 cd04049 C2_putative_Elicitor-r 99.5 8.7E-14 1.9E-18 128.6 11.5 100 17-159 1-106 (124)
77 KOG1028 Ca2+-dependent phospho 99.5 1.1E-13 2.5E-18 153.0 14.1 131 14-186 164-300 (421)
78 cd08390 C2A_Synaptotagmin-15-1 99.5 1.2E-13 2.7E-18 127.3 11.8 102 16-159 13-121 (123)
79 cd04011 C2B_Ferlin C2 domain s 99.5 1.6E-13 3.4E-18 124.4 11.8 81 80-161 21-110 (111)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.5 3.7E-14 8E-19 132.7 7.6 107 15-165 11-125 (133)
81 cd08406 C2B_Synaptotagmin-12 C 99.5 3.6E-14 7.8E-19 133.4 7.1 106 16-165 14-127 (136)
82 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.2E-13 2.6E-18 133.8 10.2 103 15-159 25-136 (162)
83 PRK05443 polyphosphate kinase; 99.5 2.4E-12 5.3E-17 149.3 22.2 208 240-627 346-563 (691)
84 cd08692 C2B_Tac2-N C2 domain s 99.5 1.1E-13 2.3E-18 129.0 8.1 109 14-165 11-127 (135)
85 cd08404 C2B_Synaptotagmin-4 C2 99.5 8.9E-14 1.9E-18 130.8 7.7 106 15-164 13-126 (136)
86 cd08676 C2A_Munc13-like C2 dom 99.5 2.2E-13 4.7E-18 130.4 10.4 100 14-159 25-153 (153)
87 cd08675 C2B_RasGAP C2 domain s 99.5 3.3E-13 7.1E-18 127.2 11.0 81 80-160 19-119 (137)
88 cd04038 C2_ArfGAP C2 domain pr 99.5 4E-13 8.6E-18 127.7 11.6 91 17-151 2-93 (145)
89 cd04026 C2_PKC_alpha_gamma C2 99.5 4.3E-13 9.3E-18 125.2 11.6 108 12-162 8-122 (131)
90 cd04021 C2_E3_ubiquitin_ligase 99.5 1E-12 2.3E-17 121.8 13.6 97 80-177 22-124 (125)
91 cd08402 C2B_Synaptotagmin-1 C2 99.4 8.7E-14 1.9E-18 130.8 6.1 107 15-165 13-127 (136)
92 TIGR03705 poly_P_kin polyphosp 99.4 3E-12 6.6E-17 147.6 19.4 207 241-627 338-554 (672)
93 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.6E-13 3.5E-18 129.0 7.2 107 15-165 13-127 (136)
94 cd00275 C2_PLC_like C2 domain 99.4 1.7E-12 3.7E-17 120.2 13.8 116 18-179 3-127 (128)
95 cd04032 C2_Perforin C2 domain 99.4 5.7E-13 1.2E-17 123.6 10.5 91 15-149 26-119 (127)
96 cd08409 C2B_Synaptotagmin-15 C 99.4 1.7E-13 3.7E-18 129.2 7.1 106 16-164 14-127 (137)
97 cd08403 C2B_Synaptotagmin-3-5- 99.4 2E-13 4.4E-18 128.0 7.4 108 14-165 11-126 (134)
98 cd00276 C2B_Synaptotagmin C2 d 99.4 1.8E-13 4E-18 127.8 6.7 106 16-165 13-126 (134)
99 cd08691 C2_NEDL1-like C2 domai 99.4 2.8E-12 6E-17 120.7 14.0 96 80-177 21-136 (137)
100 cd04009 C2B_Munc13-like C2 dom 99.4 1.1E-12 2.3E-17 123.0 10.3 92 16-149 15-118 (133)
101 PRK12452 cardiolipin synthetas 99.4 7E-13 1.5E-17 150.6 10.6 148 233-461 335-482 (509)
102 PHA03003 palmytilated EEV memb 99.4 2.2E-12 4.7E-17 141.2 14.1 146 243-459 217-363 (369)
103 cd08408 C2B_Synaptotagmin-14_1 99.4 2.1E-12 4.6E-17 121.8 11.9 107 15-164 13-128 (138)
104 cd08410 C2B_Synaptotagmin-17 C 99.4 5.6E-13 1.2E-17 125.3 7.3 108 15-165 12-127 (135)
105 KOG0696 Serine/threonine prote 99.4 2.4E-13 5.3E-18 143.3 4.3 106 14-162 177-289 (683)
106 PLN03200 cellulose synthase-in 99.4 7.8E-13 1.7E-17 165.0 9.0 122 12-181 1975-2101(2102)
107 PRK13912 nuclease NucT; Provis 99.4 1.3E-11 2.8E-16 121.5 15.7 141 241-459 32-174 (177)
108 cd08686 C2_ABR C2 domain in th 99.4 9.3E-12 2E-16 113.0 12.9 65 80-145 15-91 (118)
109 cd04037 C2E_Ferlin C2 domain f 99.4 3.8E-12 8.3E-17 117.9 10.6 118 18-182 1-121 (124)
110 cd04035 C2A_Rabphilin_Doc2 C2 99.4 6.7E-12 1.4E-16 115.8 12.0 101 16-158 14-122 (123)
111 cd04048 C2A_Copine C2 domain f 99.3 4.1E-12 8.9E-17 116.8 10.3 80 80-159 21-112 (120)
112 KOG2059 Ras GTPase-activating 99.3 3.2E-12 6.9E-17 142.1 8.7 133 15-191 3-136 (800)
113 cd04047 C2B_Copine C2 domain s 99.1 2.1E-10 4.6E-15 103.6 9.5 70 80-150 21-101 (110)
114 PRK01642 cls cardiolipin synth 99.1 2.4E-10 5.2E-15 129.6 12.0 148 232-461 308-456 (483)
115 PF00168 C2: C2 domain; Inter 99.1 1.6E-10 3.6E-15 98.0 8.2 81 19-141 1-85 (85)
116 KOG1011 Neurotransmitter relea 99.1 1.8E-10 4E-15 126.1 7.2 123 14-182 292-426 (1283)
117 PF13091 PLDc_2: PLD-like doma 99.1 6.9E-10 1.5E-14 102.3 10.1 125 247-456 1-126 (126)
118 cd00030 C2 C2 domain. The C2 d 99.1 8.7E-10 1.9E-14 95.2 10.1 80 80-159 20-102 (102)
119 smart00239 C2 Protein kinase C 99.0 1.2E-09 2.6E-14 94.9 10.0 73 80-152 21-97 (101)
120 PRK11263 cardiolipin synthase 99.0 1.4E-09 2.9E-14 120.5 11.9 134 241-457 205-340 (411)
121 PLN02223 phosphoinositide phos 99.0 4.5E-09 9.7E-14 117.2 14.4 96 80-179 435-536 (537)
122 KOG1031 Predicted Ca2+-depende 99.0 1.7E-09 3.7E-14 117.4 10.6 170 15-240 1-185 (1169)
123 KOG1028 Ca2+-dependent phospho 98.9 1.2E-09 2.6E-14 121.2 6.6 107 15-165 296-410 (421)
124 PLN02952 phosphoinositide phos 98.9 1.9E-08 4.1E-13 114.6 14.8 96 80-179 497-598 (599)
125 PF00614 PLDc: Phospholipase D 98.9 4.7E-10 1E-14 75.1 1.1 27 363-397 2-28 (28)
126 cd08374 C2F_Ferlin C2 domain s 98.9 7.6E-09 1.6E-13 96.5 9.4 72 80-151 25-125 (133)
127 PHA02820 phospholipase-D-like 98.9 1.1E-08 2.4E-13 113.7 12.4 153 244-458 220-379 (424)
128 COG5038 Ca2+-dependent lipid-b 98.9 5E-09 1.1E-13 123.0 9.6 123 16-182 1039-1163(1227)
129 COG5038 Ca2+-dependent lipid-b 98.9 8.6E-09 1.9E-13 121.1 11.3 129 15-187 434-564 (1227)
130 PLN02230 phosphoinositide phos 98.8 3.4E-08 7.4E-13 112.3 13.5 96 80-179 496-597 (598)
131 KOG0169 Phosphoinositide-speci 98.7 4.1E-08 8.9E-13 111.6 11.4 98 80-181 641-745 (746)
132 PLN02222 phosphoinositide phos 98.7 8.5E-08 1.9E-12 108.9 14.0 96 80-179 479-580 (581)
133 PLN02228 Phosphoinositide phos 98.7 1.3E-07 2.8E-12 107.2 13.9 99 80-182 458-563 (567)
134 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.5E-07 3.2E-12 83.1 8.7 65 80-148 23-87 (109)
135 KOG1264 Phospholipase C [Lipid 98.4 1.1E-06 2.4E-11 99.4 11.2 126 14-186 1062-1195(1267)
136 KOG3603 Predicted phospholipas 98.4 4.5E-06 9.7E-11 89.7 13.8 166 227-459 265-439 (456)
137 KOG3603 Predicted phospholipas 98.3 9.8E-05 2.1E-09 79.7 22.8 259 243-635 73-340 (456)
138 KOG1328 Synaptic vesicle prote 98.3 1.5E-07 3.2E-12 105.2 0.9 90 94-185 179-306 (1103)
139 COG1502 Cls Phosphatidylserine 98.3 3.4E-06 7.3E-11 94.7 11.5 135 245-459 273-409 (438)
140 KOG1328 Synaptic vesicle prote 98.2 4.6E-07 9.9E-12 101.5 1.9 93 14-148 944-1048(1103)
141 PRK09428 pssA phosphatidylseri 98.0 4.1E-05 8.9E-10 85.9 13.1 142 242-458 251-407 (451)
142 KOG0905 Phosphoinositide 3-kin 97.9 9E-06 1.9E-10 95.6 4.9 107 11-159 1518-1633(1639)
143 KOG2059 Ras GTPase-activating 97.7 5.1E-05 1.1E-09 85.8 7.0 107 79-185 150-281 (800)
144 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00012 2.5E-09 67.0 6.2 81 79-159 32-143 (143)
145 smart00155 PLDc Phospholipase 97.5 8.7E-05 1.9E-09 50.0 2.6 24 364-395 3-26 (28)
146 PF13918 PLDc_3: PLD-like doma 97.4 0.0006 1.3E-08 66.4 9.0 70 226-305 70-140 (177)
147 KOG2060 Rab3 effector RIM1 and 97.4 0.00016 3.4E-09 76.7 5.4 109 15-164 267-382 (405)
148 KOG3837 Uncharacterized conser 97.3 0.00019 4.1E-09 76.7 3.7 99 80-181 388-504 (523)
149 KOG1013 Synaptic vesicle prote 97.3 0.00032 7E-09 73.3 5.0 102 15-160 231-340 (362)
150 KOG1011 Neurotransmitter relea 97.1 0.0015 3.4E-08 72.9 8.3 80 80-159 1145-1235(1283)
151 PF07894 DUF1669: Protein of u 96.9 0.012 2.5E-07 61.6 12.3 163 209-456 116-278 (284)
152 cd00138 PLDc Phospholipase D. 96.8 0.0029 6.3E-08 61.6 6.8 60 559-632 19-78 (176)
153 KOG1013 Synaptic vesicle prote 96.8 0.00032 6.9E-09 73.3 -0.2 127 16-184 92-233 (362)
154 PLN02964 phosphatidylserine de 96.7 0.0022 4.8E-08 74.4 6.2 85 80-164 68-156 (644)
155 cd08684 C2A_Tac2-N C2 domain f 96.7 0.0012 2.5E-08 56.4 2.9 77 81-159 22-103 (103)
156 KOG1326 Membrane-associated pr 96.7 0.00046 1E-08 80.9 0.2 132 80-218 227-369 (1105)
157 KOG1326 Membrane-associated pr 96.7 0.00098 2.1E-08 78.2 2.8 86 18-145 614-702 (1105)
158 PRK13912 nuclease NucT; Provis 96.7 0.0043 9.4E-08 61.1 7.0 53 560-632 32-84 (177)
159 PF12416 DUF3668: Cep120 prote 96.3 0.063 1.4E-06 58.1 13.5 104 80-184 18-136 (340)
160 PRK05443 polyphosphate kinase; 96.0 0.045 9.8E-07 64.7 11.6 132 241-459 512-648 (691)
161 TIGR03705 poly_P_kin polyphosp 95.9 0.052 1.1E-06 63.9 11.2 141 231-458 493-639 (672)
162 KOG1265 Phospholipase C [Lipid 95.8 0.044 9.4E-07 64.1 9.9 98 13-162 699-806 (1189)
163 PF10358 NT-C2: N-terminal C2 95.4 0.44 9.6E-06 44.7 13.7 103 81-187 25-142 (143)
164 PF11495 Regulator_TrmB: Archa 95.3 0.084 1.8E-06 54.3 9.2 50 241-307 9-58 (233)
165 PLN03008 Phospholipase D delta 94.6 0.074 1.6E-06 63.1 7.2 76 230-305 554-633 (868)
166 KOG1327 Copine [Signal transdu 94.6 0.049 1.1E-06 61.4 5.5 69 80-149 157-236 (529)
167 PLN02352 phospholipase D epsil 94.4 0.13 2.9E-06 60.7 8.7 65 241-305 452-519 (758)
168 COG3886 Predicted HKD family n 94.1 0.59 1.3E-05 45.9 11.0 140 241-457 38-178 (198)
169 PF13091 PLDc_2: PLD-like doma 94.0 0.087 1.9E-06 48.0 5.0 44 567-630 2-45 (126)
170 cd08398 C2_PI3K_class_I_alpha 93.8 1.3 2.9E-05 42.7 12.9 67 80-147 26-106 (158)
171 PF15627 CEP76-C2: CEP76 C2 do 93.6 0.67 1.5E-05 44.5 10.3 101 82-183 36-153 (156)
172 KOG1452 Predicted Rho GTPase-a 92.9 0.29 6.3E-06 51.3 7.1 124 10-181 44-168 (442)
173 PLN02270 phospholipase D alpha 92.8 0.36 7.9E-06 57.3 8.6 65 241-305 498-569 (808)
174 PF13918 PLDc_3: PLD-like doma 92.2 1.5 3.2E-05 43.1 10.7 64 564-635 85-148 (177)
175 KOG1329 Phospholipase D1 [Lipi 92.0 0.49 1.1E-05 56.2 8.4 26 367-400 703-728 (887)
176 cd08693 C2_PI3K_class_I_beta_d 91.1 1 2.2E-05 44.2 8.5 51 80-130 27-86 (173)
177 cd08687 C2_PKN-like C2 domain 90.6 1.5 3.2E-05 38.1 7.8 86 78-179 7-92 (98)
178 cd04012 C2A_PI3K_class_II C2 d 89.9 2.2 4.7E-05 41.8 9.6 91 15-147 6-119 (171)
179 cd08380 C2_PI3K_like C2 domain 89.6 1.9 4.1E-05 41.3 8.8 69 80-148 28-108 (156)
180 PF15625 CC2D2AN-C2: CC2D2A N- 89.4 1.5 3.2E-05 42.9 7.9 79 70-148 27-107 (168)
181 COG0855 Ppk Polyphosphate kina 89.4 1.4 3E-05 50.8 8.7 97 237-376 347-448 (696)
182 PF13090 PP_kinase_C: Polyphos 88.9 1.9 4.1E-05 46.5 8.9 138 242-455 18-161 (352)
183 PLN02866 phospholipase D 87.4 1.3 2.7E-05 54.1 7.1 62 560-628 343-404 (1068)
184 cd08397 C2_PI3K_class_III C2 d 86.8 2.7 5.8E-05 40.7 7.8 69 79-147 29-107 (159)
185 PF00792 PI3K_C2: Phosphoinosi 84.8 6.7 0.00014 37.0 9.4 67 81-147 3-85 (142)
186 KOG3964 Phosphatidylglycerolph 84.1 1.5 3.3E-05 47.6 5.1 127 241-401 38-173 (469)
187 cd08399 C2_PI3K_class_I_gamma 82.6 11 0.00024 37.1 10.1 100 82-185 32-143 (178)
188 cd08695 C2_Dock-B C2 domains f 81.1 12 0.00026 37.3 9.6 54 91-144 52-111 (189)
189 cd08694 C2_Dock-A C2 domains f 78.1 15 0.00033 36.6 9.4 55 91-145 52-114 (196)
190 PF11618 DUF3250: Protein of u 77.4 18 0.00039 32.6 8.9 94 83-180 2-105 (107)
191 PF14429 DOCK-C2: C2 domain in 74.3 8 0.00017 38.2 6.4 55 92-146 59-120 (184)
192 KOG0694 Serine/threonine prote 72.6 3.2 6.9E-05 48.3 3.4 96 80-184 28-125 (694)
193 PF11495 Regulator_TrmB: Archa 71.4 6.7 0.00015 40.3 5.3 51 559-629 8-58 (233)
194 KOG4269 Rac GTPase-activating 65.4 16 0.00034 43.9 7.0 98 80-185 775-887 (1112)
195 smart00142 PI3K_C2 Phosphoinos 62.2 49 0.0011 29.1 8.3 50 80-129 32-90 (100)
196 cd08696 C2_Dock-C C2 domains f 50.6 39 0.00085 33.4 6.1 39 92-130 54-95 (179)
197 cd08679 C2_DOCK180_related C2 49.6 44 0.00094 32.8 6.4 52 94-146 55-115 (178)
198 cd05137 RasGAP_CLA2_BUD2 CLA2/ 49.2 19 0.00042 40.0 4.2 49 136-186 1-50 (395)
199 KOG3964 Phosphatidylglycerolph 49.0 28 0.00061 38.2 5.1 56 560-631 38-93 (469)
200 KOG1327 Copine [Signal transdu 46.9 23 0.0005 40.5 4.4 86 91-179 40-131 (529)
201 PF07894 DUF1669: Protein of u 45.1 38 0.00082 35.9 5.3 51 560-629 133-183 (284)
202 cd08697 C2_Dock-D C2 domains f 44.7 65 0.0014 32.0 6.6 39 92-130 56-97 (185)
203 PF06219 DUF1005: Protein of u 43.2 2.6E+02 0.0056 31.3 11.3 112 80-194 36-178 (460)
204 PTZ00447 apical membrane antig 31.8 2.9E+02 0.0063 30.1 9.2 94 80-178 74-171 (508)
205 PF10409 PTEN_C2: C2 domain of 28.7 4.6E+02 0.0099 23.9 10.1 68 80-148 25-98 (134)
206 PF09345 DUF1987: Domain of un 27.7 95 0.0021 27.6 4.2 68 231-308 12-85 (99)
207 KOG3543 Ca2+-dependent activat 27.5 2.5E+02 0.0055 32.7 8.4 93 82-179 362-458 (1218)
208 PF02633 Creatininase: Creatin 26.2 1.1E+02 0.0023 31.5 5.0 58 598-667 36-100 (237)
209 COG3139 Uncharacterized protei 23.3 49 0.0011 28.1 1.5 37 603-649 10-51 (90)
210 PF13289 SIR2_2: SIR2-like dom 21.7 3E+02 0.0066 24.9 6.8 65 242-341 74-142 (143)
211 PF09587 PGA_cap: Bacterial ca 21.7 2.4E+02 0.0052 29.0 6.7 62 606-683 172-246 (250)
212 PF07162 B9-C2: Ciliary basal 21.3 7.5E+02 0.016 23.8 10.9 51 94-144 41-101 (168)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.5e-134 Score=1141.26 Aligned_cols=688 Identities=73% Similarity=1.235 Sum_probs=602.8
Q ss_pred CCCCceeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 005439 6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT 85 (696)
Q Consensus 6 ~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~ 85 (696)
+.-+.++.+|||+|+++|++|++||+||..+++++.+|..+..|..+...-..+.+..|....+++-..+..+++||||+
T Consensus 3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~ 82 (868)
T PLN03008 3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT 82 (868)
T ss_pred cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence 34567789999999999999999999999998888888766555543222222222233222223334456788999999
Q ss_pred EEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 86 v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
|.++++++.||+|++++.||+|||+|.|.+.++...|+|+|+|.|.+++++||.+.|||.++..|+.++.|++|++..++
T Consensus 83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK 162 (868)
T ss_pred EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEEcccccCCCCCceecCCCCCCCccchHH
Q 005439 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245 (696)
Q Consensus 166 ~~~~~g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~ 245 (696)
+.+.+++|+|+|+|.|...++.|..|++++++|.|++.++||.+.|++|+||+|+|+.+||.|.+.|.+|+.|.+..||+
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe 242 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE 242 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence 88889999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccC
Q 005439 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT 325 (696)
Q Consensus 246 ~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~ 325 (696)
+++.||++||++|||+|||++|+++|+|++.. +.+...+|+++|++||+|||+|+|||||+.+|...++++..|+|.+
T Consensus 243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 243 DICYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999999998752 2223589999999999999999999999999987777888999999
Q ss_pred ChHHHHhhhcCCCcEEEecCCCCCCccchhhcc-----------cccccccCccceEEecCCCCCCCcceEEEEcccccC
Q 005439 326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (696)
Q Consensus 326 ~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~-----------~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~ 394 (696)
|+++++++|+|++|+|.++|+++....+++++. ..+++|+||||+||||+++++++|+.||||||+|||
T Consensus 321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc 400 (868)
T PLN03008 321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400 (868)
T ss_pred ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence 999999999999999999999987766777652 344789999999999998777789999999999999
Q ss_pred CccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccc
Q 005439 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (696)
Q Consensus 395 ~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~ 474 (696)
+|||||++|++++++++.|++||+|+++.++.+.|++||||+||+|+||+|.||+++|++||+++++.+.+.+..++...
T Consensus 401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~ 480 (868)
T PLN03008 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480 (868)
T ss_pred CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999886433233344445
Q ss_pred ccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhcccccccc
Q 005439 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (696)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~ 554 (696)
|.++.|+++.++++++.|.....++.....+...+.+...+..++++|.+|++||+++++++++|.++++++.++|.||+
T Consensus 481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk 560 (868)
T PLN03008 481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAK 560 (868)
T ss_pred cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccc
Confidence 66888888889888776643221111111111111111111256789999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCC
Q 005439 555 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 634 (696)
Q Consensus 555 ~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~ 634 (696)
+..+|+|||+||++||++||||||||||||++++.+|+++++.++.|+|+.+|+++|+++++++++|+|+||+|++|+|+
T Consensus 561 ~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~ 640 (868)
T PLN03008 561 RLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGD 640 (868)
T ss_pred ccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCCcccCCCCCccCCC
Q 005439 635 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG 695 (696)
Q Consensus 635 ~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~~~~~~ 695 (696)
+++.++|+||+||++||+++|.+|+++|+++|.+.+|++||+||||||||+..+..+.++|
T Consensus 641 ~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~ 701 (868)
T PLN03008 641 PKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNG 701 (868)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCC
Confidence 9999999999999999999999999999998876689999999999999988766555544
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=6.6e-121 Score=1031.66 Aligned_cols=617 Identities=48% Similarity=0.856 Sum_probs=545.3
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccc-cCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACD-VCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
.+|||+|+|+|++|++||+++. ++.+++++..+. .|+. ..+++||||+|.+++.
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~y~tv~~~~a 58 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGV------------------------GKGESQLYATIDLEKA 58 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccC------------------------CCCCCCceEEEEeCCc
Confidence 5899999999999999998644 433444332111 1111 1235899999999999
Q ss_pred eEEEeeeccC-CCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCCC
Q 005439 92 TVARTRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170 (696)
Q Consensus 92 ~~~~T~~~~~-~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~ 170 (696)
+++||+++.+ ..||.|||+|.++++++.+.++|+|+|.+.++..+||.+.||+.++.+|+.+++||++++..+++.++.
T Consensus 59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~ 138 (808)
T PLN02270 59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG 138 (808)
T ss_pred EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence 9999999998 469999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHH
Q 005439 171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA 250 (696)
Q Consensus 171 g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~a 250 (696)
.+|+|+++|.|.+.++.|..|+++ ++|.|++.++||.+.|++|+||+|+|+.++|.|.+.|.+|+.|.+..||+++++|
T Consensus 139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A 217 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA 217 (808)
T ss_pred CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence 899999999999999999999977 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHH
Q 005439 251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET 330 (696)
Q Consensus 251 I~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~ 330 (696)
|.+||++|||++|+|+|+++|+|++.++.+.+ +.+|+++|++||++||+|+||+||+.++... ++..|+|.++++++
T Consensus 218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~-~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t 294 (808)
T PLN02270 218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPGG-DVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEET 294 (808)
T ss_pred HHhhhcEEEEEEeecCCCceEecCCCCCCCCC-cchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHH
Confidence 99999999999999999999999765444443 5799999999999999999999999876532 35568899999999
Q ss_pred HhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCC---CCCcceEEEEcccccCCccCCCCCCCccc
Q 005439 331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQAS---GNNRKITAFIGGIDLCDGRYDTPEHRLFR 407 (696)
Q Consensus 331 ~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~---~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d 407 (696)
+++|++.+|+|+++|++|....+++++...+..++||||+||||++++ +++|+.+|||||+|||+|||||++|++++
T Consensus 295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~ 374 (808)
T PLN02270 295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR 374 (808)
T ss_pred HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence 999999999999999999766556666567788999999999999743 35799999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCC---CCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccccccccccccc
Q 005439 408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484 (696)
Q Consensus 408 ~~~~~~~~dy~n~~~~~---~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (696)
++++.+..||+|+++.+ +.+.||+||||+||+|+||+|.||+.+|.+||+.+++.. .+..+.
T Consensus 375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~---------------ll~~~~ 439 (808)
T PLN02270 375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD---------------ILVQLR 439 (808)
T ss_pred cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc---------------chhhhc
Confidence 99999999999998864 678899999999999999999999999999999987753 112222
Q ss_pred ccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCccchhHHHH
Q 005439 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQT 564 (696)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ 564 (696)
++.++..|.. + .++ +.+.++|.||++||++.++++++|..+++++.++++++++...++||+.
T Consensus 440 ~~~~~~~P~~----------~--~~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~ 502 (808)
T PLN02270 440 ELEDVIIPPS----------P--VMF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502 (808)
T ss_pred ccccccCCCC----------c--ccC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHH
Confidence 2222221110 0 011 2456889999999999999999999999988899999988888999999
Q ss_pred HHHHHHHhccceEEEeeeeecccccCCCcc----ccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchH
Q 005439 565 AYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (696)
Q Consensus 565 ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~----~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~ 640 (696)
+|++||++||||||||||||++++.+|+++ ++.++.|+|+.+|+++|+++++++++|+|+||+|++|+|.+++.++
T Consensus 503 aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~v 582 (808)
T PLN02270 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSV 582 (808)
T ss_pred HHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchH
Confidence 999999999999999999999999999765 6778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCCcccCCCCC
Q 005439 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDV 690 (696)
Q Consensus 641 ~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~ 690 (696)
|+||+||++||++||.+|+++|+++|++.||++||+||||||||...+++
T Consensus 583 q~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~ 632 (808)
T PLN02270 583 QAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGE 632 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcc
Confidence 99999999999999999999999999855899999999999999876544
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.3e-114 Score=979.57 Aligned_cols=539 Identities=45% Similarity=0.813 Sum_probs=474.8
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCCCeeeEEEecccccccCCce-eEEEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWY 157 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~-~~~w~ 157 (696)
.||||+|.+++.+++|| .+..||+|+|+|.++++++. +.++|+|+| +..+||.+.||+.++.+|+. +++||
T Consensus 36 ~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~ 108 (758)
T PLN02352 36 KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFF 108 (758)
T ss_pred CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEE
Confidence 49999999999999999 66679999999999999998 789999999 58999999999999999876 99999
Q ss_pred EccCCCCCCCCCCceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEEcccccCCCCCceecCCCCC
Q 005439 158 DIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKL 237 (696)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~ 237 (696)
++++..+++.+. .+|+++|+|.|.+.++.|..|+++ ++|.|++.++||.+.|++|+||+|+|+.++|.|.+.| -
T Consensus 109 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~ 182 (758)
T PLN02352 109 PLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----C 182 (758)
T ss_pred EcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----e
Confidence 999998888754 899999999999999999999987 6999999999999999999999999999999999998 5
Q ss_pred CCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCC
Q 005439 238 YKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317 (696)
Q Consensus 238 y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~ 317 (696)
|.+.++|++|++||++||++|||++|+|+|+++|+|++.++.+.+.+.+|+++|++||++||+||||+||+.++... +
T Consensus 183 ~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~ 260 (758)
T PLN02352 183 GSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--I 260 (758)
T ss_pred cCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--c
Confidence 66689999999999999999999999999999999987543332335899999999999999999999999987643 4
Q ss_pred CCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCC--CCcceEEEEcccccCC
Q 005439 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCD 395 (696)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~--~~~~~vAfvGG~dl~~ 395 (696)
+..|+|.++++++.++++|.+|+|.++|+++. ..+..|+||||+||||+++++ ..|+.+|||||+|||+
T Consensus 261 ~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~ 331 (758)
T PLN02352 261 KNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCD 331 (758)
T ss_pred ccccccccchHHHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccC
Confidence 56677888989999999999999999887663 235679999999999997433 5688899999999999
Q ss_pred ccCCCCCCCcccCCCcc-ccCCCCCCCCC---CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcc
Q 005439 396 GRYDTPEHRLFRDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 471 (696)
Q Consensus 396 ~R~Dt~~H~l~d~~~~~-~~~dy~n~~~~---~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~ 471 (696)
|||||++|+++|++++. +++||+|+.+. ++.+.|||||||+||+|+||||+||++||+||||++++..
T Consensus 332 GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-------- 403 (758)
T PLN02352 332 GRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-------- 403 (758)
T ss_pred CccCCccCCcccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------
Confidence 99999999999998875 67899999876 3678899999999999999999999999999999987652
Q ss_pred cccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccc
Q 005439 472 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 551 (696)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~ 551 (696)
.+++..++.++.. +|. .+ ..+.++|.+|++||++.++++++|..
T Consensus 404 -------~l~p~~~~~~~~~------------~p~---~~----~~~~~~w~VQv~RSid~~sa~~~P~~---------- 447 (758)
T PLN02352 404 -------VLVPTSSIRNLVH------------QPG---SS----ESNNRNWKVQVYRSIDHVSASHMPRN---------- 447 (758)
T ss_pred -------ccCCccccccccc------------CCC---CC----cccCCcccceEEEecCccccccCCCC----------
Confidence 1111111111110 010 00 23468999999999999988888752
Q ss_pred cccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 552 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 552 ~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
...|+||++||++||++||||||||||||+++++.|+++++.++.|+|+.+|+++|+++++++++|+|+||+|++|
T Consensus 448 ----~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~P 523 (758)
T PLN02352 448 ----LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWP 523 (758)
T ss_pred ----CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCCcccCCCCC
Q 005439 632 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDV 690 (696)
Q Consensus 632 ~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~ 690 (696)
+|.+++.++|+||+||++||+++|.+|.++|+++|++.+|.|||+||||||||+..++.
T Consensus 524 eG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~ 582 (758)
T PLN02352 524 EGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGE 582 (758)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCc
Confidence 99999999999999999999999999999999999755799999999999999886543
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-106 Score=903.42 Aligned_cols=610 Identities=41% Similarity=0.678 Sum_probs=511.4
Q ss_pred CCceeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEE
Q 005439 8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV 87 (696)
Q Consensus 8 ~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~ 87 (696)
....+.++||+|.++|..+..++++.....+.+..+.++..|.-...+..--.+++|.+ +++..+.++..+.++|+++.
T Consensus 67 ~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~e~Ylt~~ 145 (887)
T KOG1329|consen 67 GSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPR-SSLNSSMEKRKTLENYLTVV 145 (887)
T ss_pred cceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCcc-CCcccchhhhhhccchheee
Confidence 44556799999999999999999776555444444433332222211100001222322 12222344456689999999
Q ss_pred ECCeeEEEeeeccCC-CCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 88 VPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 88 ~~~~~~~~T~~~~~~-~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
+......+|....+. .+|.|.+.|.+.+.+....+.+++.+.+..+ ...+|.+.+++..+.+|..+..|++++..+++
T Consensus 146 l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 146 LHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGK 225 (887)
T ss_pred echhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCc
Confidence 999888899998886 8999999999999999999999999999999 89999999999999999999999999988888
Q ss_pred CCCCCceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEEcccccCCCCCceecCCCCC-CCccchH
Q 005439 166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKL-YKPGTCW 244 (696)
Q Consensus 166 ~~~~~g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~-y~~~~~f 244 (696)
+.+..-.+.+++.|.+......|..+..+++.+.+++.+.++.+.|..+++|+|.|+.++|.|.+.+..|++ |.+..||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~ 305 (887)
T KOG1329|consen 226 PHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYW 305 (887)
T ss_pred cccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHH
Confidence 777777788999999999999999999998999999999999999999999999999999999999999995 4559999
Q ss_pred HHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCccc
Q 005439 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA 324 (696)
Q Consensus 245 ~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~ 324 (696)
+++++||++||+.|||+|||++|+++|+|+...+ ...||+++|++||++||+|+|||||++++... .+
T Consensus 306 edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i~ 373 (887)
T KOG1329|consen 306 EDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------IN 373 (887)
T ss_pred HHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc--------cC
Confidence 9999999999999999999999999999987632 25899999999999999999999999987542 33
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCC
Q 005439 325 THDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404 (696)
Q Consensus 325 ~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~ 404 (696)
++.+++..+++|++|+|+++|+++.+. ..++|+||||+||||++ +||+||+|||+|||||++|+
T Consensus 374 S~~~k~~l~~lH~nV~vlr~P~~~~~~--------~~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~ 437 (887)
T KOG1329|consen 374 SHYEKTRLFFLHPNVKVLRCPRHPGSG--------PTTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHP 437 (887)
T ss_pred chhHHHHHhhcCCCeEEEECCCCcCCC--------CceEEecceEEEEEcce--------eccccceeccccccCCcccc
Confidence 567888899999999999999988642 13689999999999998 99999999999999999999
Q ss_pred cccCCCccccCCCCCCCCC-----CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccc
Q 005439 405 LFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479 (696)
Q Consensus 405 l~d~~~~~~~~dy~n~~~~-----~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~ 479 (696)
|+|++++++++||+|+++. ++.+.||||||||||+|.||+|+||++||+||||++...+ + ..++.
T Consensus 438 L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K-------~---~~~~~ 507 (887)
T KOG1329|consen 438 LFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREK-------K---PYDDS 507 (887)
T ss_pred ccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhccc-------C---CCCcc
Confidence 9999999999999999987 7899999999999999999999999999999999987653 0 00111
Q ss_pred cccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCccch
Q 005439 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVID 559 (696)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e 559 (696)
++.+.+++... .|.. + ...+++.|.+|+++|++.++..+ ++.....|+|+++...+|
T Consensus 508 ------~p~L~p~~~~~-------~~~~---~---~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e 564 (887)
T KOG1329|consen 508 ------LPLLLPISDIT-------GPSE---P---NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIE 564 (887)
T ss_pred ------ceeecChhhhc-------CCCC---c---cccccccccccceeeccCCcccc----hHHhhhhcccccCCCchH
Confidence 22122222110 1111 1 14567889999999999887655 345667899999999999
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC--CC--CC
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG--DP 635 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p--~G--~~ 635 (696)
+|||+||+++|++|||||||||||||++++.|. .+.|.++.+|++||++|+|+++.|+||||||++| || .+
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p 639 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTP 639 (887)
T ss_pred HHHHHHHHHHHHhccceEEEeeeeEEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCC
Confidence 999999999999999999999999999987664 4679999999999999999999999999999999 88 78
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCCcccC
Q 005439 636 KTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEA 686 (696)
Q Consensus 636 ~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~ 686 (696)
++.++|+||||||+|||+||++|+++|++.|+| |.+||.||+||+++..
T Consensus 640 ~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d--~~~yi~f~~lr~~g~~ 688 (887)
T KOG1329|consen 640 GSGSVQAILHWQYRTMSMGYKSIYKALKAVGLD--PADYIDFLGLRCLGNR 688 (887)
T ss_pred CcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCC--ccccceeeeeeeeecc
Confidence 899999999999999999999999999999985 6777777777777665
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=8.7e-77 Score=682.38 Aligned_cols=407 Identities=30% Similarity=0.516 Sum_probs=302.1
Q ss_pred CcCCCCc----cCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCC
Q 005439 203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP 278 (696)
Q Consensus 203 ~s~~P~~----~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~ 278 (696)
.+++|++ .||.+++|+|| +++|++|++||++||++|||++|||+|++||+|++.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~-- 378 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH-- 378 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence 3567777 68999999998 688999999999999999999999999999998532
Q ss_pred CCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhh--cCCCcEEEecCCCCCCccchhh
Q 005439 279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK 356 (696)
Q Consensus 279 ~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~~~~~~~~p~~~~~~~~ 356 (696)
.+...+|+++|++||++||+||||+||++|..... . +..+.+.+ .++||+|... |....
T Consensus 379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~---P~~~~---- 439 (1068)
T PLN02866 379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRY---PDHFS---- 439 (1068)
T ss_pred --CchHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEec---Ccccc----
Confidence 12248999999999999999999999998642210 0 11122222 3789998743 32210
Q ss_pred cccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccc-cCCCCCCCCC------------
Q 005439 357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------ 423 (696)
Q Consensus 357 ~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~-~~dy~n~~~~------------ 423 (696)
....+||||||+||||++ |||+||+|||+|||||++|++.|+....| ++||+|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 123689999999999998 99999999999999999999999776555 6799999863
Q ss_pred -CCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccch-----hhhhhcc----cccc-------------cc---
Q 005439 424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTE-----LTFKFKR----VSHW-------------RD--- 477 (696)
Q Consensus 424 -~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~-----~~~~~~~----~~~~-------------~~--- 477 (696)
||...|||||||+||+|+||+|+||++||++|||++++.+. +.+.+.. .+.. ..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~ 589 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQ 589 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccc
Confidence 46778999999999999999999999999999999876541 0000000 0000 00
Q ss_pred ------ccc---ccccccccccCccccc-------------------------cCCCccccC---C----CCcc------
Q 005439 478 ------DYL---IKIGRISWILSPELSL-------------------------KTNGTTIVP---R----DDNV------ 510 (696)
Q Consensus 478 ------~~~---~~~~~~~~~~~~~~~~-------------------------~~~~~~~~p---~----~~~~------ 510 (696)
+.+ .+.+.++.++++.... ........+ . ++..
T Consensus 590 ~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 669 (1068)
T PLN02866 590 KGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSV 669 (1068)
T ss_pred ccccccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0001111122111000 000000000 0 0000
Q ss_pred ----------------c-------------ccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCc-cchh
Q 005439 511 ----------------V-------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV-VIDK 560 (696)
Q Consensus 511 ----------------~-------------~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~e~ 560 (696)
. ........++|.+||+||+..|| .|. .+|+
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS-------------------~G~~~~E~ 730 (1068)
T PLN02866 670 KMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWS-------------------AGTSQVEE 730 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccCCCCeEEEEEEeeccccc-------------------CCCCchHH
Confidence 0 00001234679999999985543 333 4799
Q ss_pred HHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCC--CCC---
Q 005439 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP--- 635 (696)
Q Consensus 561 sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~--G~~--- 635 (696)
||++||+++|++|+||||||||||++++.+ +..+.|+|+.+|+.||++|+++++.|+|+||||++|+ |+.
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999998632 4578999999999999999999999999999999996 654
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCeEEEEecCCcccC
Q 005439 636 KTNTVQEILFWQSQTMQMMYSVVAQELREM-QVDAHPQDYLSFYCLGKREEA 686 (696)
Q Consensus 636 ~~~~~~~i~~~~~~ti~~~~~si~~~L~~~-gi~~~~~~Yi~f~~lr~~~~~ 686 (696)
++..+|+||+|||+||++|++||+++|+++ |+ +|.|||+|||||||+.+
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~--~p~dYisf~~LRn~~~l 855 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLGP--KTHDYISFYGLRAYGRL 855 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHeEeeecccccccc
Confidence 456899999999999999999999999984 65 69999999999999887
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=5.3e-40 Score=370.55 Aligned_cols=286 Identities=22% Similarity=0.321 Sum_probs=213.9
Q ss_pred CcCCCCccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCC
Q 005439 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (696)
Q Consensus 203 ~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g 282 (696)
.+.+|...+|.+++++|| +++|+++.++|++||++|+|++|+|.+ +. .|
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g 179 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKS-------DE----IG 179 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeC-------Cc----HH
Confidence 356899999999999998 689999999999999999999999853 32 34
Q ss_pred CchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEe-cCCCCCCccchhhccccc
Q 005439 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVG 361 (696)
Q Consensus 283 ~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~p~~~~~~~~~~~~~ 361 (696)
..+.++|++||+|||+|||| +|++||... .+...+.|+++||++.. .|.... + ...+
T Consensus 180 --~~i~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~~----~---~~~~ 237 (509)
T PRK12452 180 --TKVRDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFSA----W---LLET 237 (509)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCcccc----c---cccc
Confidence 79999999999999999999 599988531 24567789999999873 332110 1 0234
Q ss_pred ccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEe
Q 005439 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD 441 (696)
Q Consensus 362 ~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~ 441 (696)
.++|||||++||||+ +||+||+|+++ +|.+.. ....+|||+|++++
T Consensus 238 ~n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~ 283 (509)
T PRK12452 238 VNYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVE 283 (509)
T ss_pred ccCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEE
Confidence 688999999999998 99999999999 454321 23568999999999
Q ss_pred ChHHHHHHHHHHHHHHhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCC
Q 005439 442 GPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPEN 521 (696)
Q Consensus 442 Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 521 (696)
||+|.+++..|.++|+.+++... . ..+ ... ..+.. .|. . ....+.
T Consensus 284 Gp~V~~l~~~F~~dW~~~~~~~~------~-~~~--------~~~---~~~~~---------~~~----~----~~~~~~ 328 (509)
T PRK12452 284 GKALYKLQAIFLEDWLYASSGLN------T-YSW--------DPF---MNRQY---------FPG----K----EISNAE 328 (509)
T ss_pred CHHHHHHHHHHHHHHHHhhCccc------c-ccc--------ccc---cchhc---------CCC----c----cccCCC
Confidence 99999999999999998754310 0 000 000 00000 011 0 011244
Q ss_pred eeeeEEeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccC
Q 005439 522 WHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADN 601 (696)
Q Consensus 522 ~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n 601 (696)
..+|++.+- |.. .+.+|+++|+++|.+||++|||+||||+|+.
T Consensus 329 ~~~q~~~sg--------p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~------------- 371 (509)
T PRK12452 329 GAVQIVASG--------PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ------------- 371 (509)
T ss_pred eEEEEEeCC--------CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-------------
Confidence 578988873 221 2478999999999999999999999999973
Q ss_pred ccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005439 602 LIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD 668 (696)
Q Consensus 602 ~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~ 668 (696)
.+..+|..| +++||+|+||+|..+| +..+. ....++++.|+++|+.
T Consensus 372 ----~l~~aL~~A--a~rGV~Vrii~p~~~D----~~~~~-----------~a~~~~~~~L~~aGv~ 417 (509)
T PRK12452 372 ----ETLTLLRLS--AISGIDVRILYPGKSD----SIISD-----------QASQSYFTPLLKAGAS 417 (509)
T ss_pred ----HHHHHHHHH--HHcCCEEEEEcCCCCC----hHHHH-----------HHHHHHHHHHHHcCCE
Confidence 677788777 5699999999996554 33222 3567888999999984
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=356.46 Aligned_cols=285 Identities=23% Similarity=0.302 Sum_probs=212.5
Q ss_pred CcCCCCccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCC
Q 005439 203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG 282 (696)
Q Consensus 203 ~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g 282 (696)
.+.+|...+|.++++.+| +++|++++++|++||++|+|++|++. ++. .|
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~-------~d~----~g 155 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWR-------PDG----LG 155 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEc-------cCC----cH
Confidence 456899999999999998 68999999999999999999999884 232 34
Q ss_pred CchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccc
Q 005439 283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGT 362 (696)
Q Consensus 283 ~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~ 362 (696)
.++.++|++||+|||+|||| ||.+|+... ..+...+.|+++||++... .|.....+ ...+.
T Consensus 156 --~~i~~aL~~aa~rGV~VriL-~D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~--~p~~~~~~---~~~~~ 216 (483)
T PRK01642 156 --DQVAEALIAAAKRGVRVRLL-YDSIGSFAF-----------FRSPYPEELRNAGVEVVEF--LKVNLGRV---FRRRL 216 (483)
T ss_pred --HHHHHHHHHHHHCCCEEEEE-EECCCCCCC-----------CcHHHHHHHHHCCCEEEEe--cCCCcccc---ccccc
Confidence 79999999999999999999 599988532 1233677788999998842 12110000 12346
Q ss_pred cccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC
Q 005439 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 442 (696)
Q Consensus 363 ~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~G 442 (696)
++|+|||++|||++ +||+||+|+++.+|.+. .....+|||+|++++|
T Consensus 217 n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~G 263 (483)
T PRK01642 217 DLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIEG 263 (483)
T ss_pred ccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEEc
Confidence 78999999999998 99999999999444321 1234689999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCe
Q 005439 443 PAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (696)
Q Consensus 443 pav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (696)
|+|.+++..|.++|+.+++... .. .. +.. ..++ ....+..
T Consensus 264 p~v~~l~~~F~~dW~~~~~~~~---------------~~---~~-----~~~--------~~~~---------~~~~~~~ 303 (483)
T PRK01642 264 PVVTALQLIFAEDWEWETGERI---------------LP---PP-----PDV--------LIMP---------FEEASGH 303 (483)
T ss_pred HHHHHHHHHHHHHHHHHhCccc---------------CC---CC-----ccc--------ccCC---------ccCCCCc
Confidence 9999999999999998765310 00 00 000 0000 0112345
Q ss_pred eeeEEeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCc
Q 005439 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (696)
Q Consensus 523 ~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~ 602 (696)
.+|++.|- |.. .+..++++|+++|.+|+++|||++|||+|+.
T Consensus 304 ~~qi~~sg--------P~~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-------------- 345 (483)
T PRK01642 304 TVQVIASG--------PGD----------------PEETIHQFLLTAIYSARERLWITTPYFVPDE-------------- 345 (483)
T ss_pred eEEEEeCC--------CCC----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH--------------
Confidence 78988763 221 2478999999999999999999999999873
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005439 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD 668 (696)
Q Consensus 603 i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~ 668 (696)
.+..+|..| +.+||+|.||+|..++ +..+. .+..++++.|.++||.
T Consensus 346 ---~i~~aL~~A--a~rGV~Vril~p~~~d----~~~~~-----------~~~~~~~~~L~~~Gv~ 391 (483)
T PRK01642 346 ---DLLAALKTA--ALRGVDVRIIIPSKND----SLLVF-----------WASRAFFTELLEAGVK 391 (483)
T ss_pred ---HHHHHHHHH--HHcCCEEEEEeCCCCC----cHHHH-----------HHHHHHHHHHHHcCCE
Confidence 678888877 5699999999997654 33222 3556778889999983
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.5e-36 Score=333.57 Aligned_cols=280 Identities=21% Similarity=0.301 Sum_probs=205.7
Q ss_pred CCccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchh
Q 005439 207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT 286 (696)
Q Consensus 207 P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~ 286 (696)
+++.||+++++.|| +++|++++++|++||++|+|++|+|.+ +. .| ..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~-------d~----~g--~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFE-------DK----VG--KQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEec-------Cc----hH--HH
Confidence 67889999999998 689999999999999999999999853 22 33 79
Q ss_pred HHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEe-cCCCCCCccchhhccccccccc
Q 005439 287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL-APRYASSKLSYFKQQIVGTIFT 365 (696)
Q Consensus 287 l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~-~~~~p~~~~~~~~~~~~~~~~r 365 (696)
|.++|++||+|||+||||+ |..|+... +....+.|.++||++.. .|..+ ++. .....+.|
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~-----~~~-~~~~~~~R 110 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR-----LLG-MRTNLFRR 110 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc-----ccc-cccccccC
Confidence 9999999999999999995 99887431 34567788899999873 33211 100 01223459
Q ss_pred CccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHH
Q 005439 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAA 445 (696)
Q Consensus 366 hHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav 445 (696)
+|+|++|||++ +||+||+|+++.++.. ....+|+|++++|+||+|
T Consensus 111 ~HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V 155 (411)
T PRK11263 111 MHRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVV 155 (411)
T ss_pred CcceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHH
Confidence 99999999998 9999999999844321 112479999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeee
Q 005439 446 YDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQ 525 (696)
Q Consensus 446 ~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQ 525 (696)
.+++..|.+.|....... . .| .+. +. .+. ....+...+|
T Consensus 156 ~~l~~~f~~~w~~~~~~~-------~--~~--------~~~-----~~----------~~~---------~~~~g~~~~~ 194 (411)
T PRK11263 156 ADIHQFELEALPGQSAAR-------R--WW--------RRH-----HR----------AEE---------NRQPGEAQAL 194 (411)
T ss_pred HHHHHHHHHHHhhcccch-------h--hh--------ccc-----cc----------Ccc---------cCCCCCeEEE
Confidence 999999999997432110 0 00 000 00 000 1123445677
Q ss_pred EEeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHH
Q 005439 526 IFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPM 605 (696)
Q Consensus 526 v~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~ 605 (696)
++.+- |. .....|+++|+.+|.+|++.|||+||||+|+.
T Consensus 195 ~v~~~--------p~----------------~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~----------------- 233 (411)
T PRK11263 195 LVWRD--------NE----------------EHRDDIERHYLKALRQARREVIIANAYFFPGY----------------- 233 (411)
T ss_pred EEECC--------Cc----------------chHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------
Confidence 76542 11 12468999999999999999999999999973
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCe
Q 005439 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDY 674 (696)
Q Consensus 606 ~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Y 674 (696)
.+..+|..| +++||+|.||+|.. ++.+.++ .+...+|+.|+++|+. +++|
T Consensus 234 ~l~~aL~~A--a~RGV~V~ii~~~~----~d~~~~~-----------~a~~~~~~~Ll~~Gv~--I~~y 283 (411)
T PRK11263 234 RLLRALRNA--ARRGVRVRLILQGE----PDMPIVR-----------VGARLLYNYLLKGGVQ--IYEY 283 (411)
T ss_pred HHHHHHHHH--HHCCCEEEEEeCCC----CCcHHHH-----------HHHHHHHHHHHHCCCE--EEEe
Confidence 678888888 56999999999954 4444444 4566788899999984 4444
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.95 E-value=8.5e-26 Score=252.72 Aligned_cols=287 Identities=24% Similarity=0.336 Sum_probs=201.7
Q ss_pred ccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHH
Q 005439 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (696)
Q Consensus 209 ~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~ 288 (696)
..++.++++.++ .++|.++.++|++|+++|++++|++.. +. .| ..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d~----~~--~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------DE----LG--REIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------Ch----hH--HHHH
Confidence 678899999987 688999999999999999999998852 22 23 7999
Q ss_pred HHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCc-EEEe-cCCCCCCccchhhcccccccccC
Q 005439 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH 366 (696)
Q Consensus 289 ~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~~~~-~~~~p~~~~~~~~~~~~~~~~rh 366 (696)
++|.++|++||+||+|+ |.+|+... ........++++++ .+.. .|..+.. . .....+.++
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-----~~~~~~~r~ 165 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP-L-----RFRRLNRRL 165 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc-c-----hhhhhhccc
Confidence 99999999999999995 99977321 12456777889999 5542 2222200 0 123467899
Q ss_pred ccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHH
Q 005439 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY 446 (696)
Q Consensus 367 HqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~ 446 (696)
|+|++|||+. ++|+||.|+.+.++... ....+|+|++++++||+|.
T Consensus 166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~ 211 (438)
T COG1502 166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA 211 (438)
T ss_pred cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence 9999999998 99999999999766431 1234899999999999999
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeE
Q 005439 447 DVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQI 526 (696)
Q Consensus 447 dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv 526 (696)
++..+|.++|+....... . +.... .+. .+.. .. ........+|+
T Consensus 212 ~l~~~f~~~w~~~~~~~~--------------~---~~~~~---~~~----------~~~~--~~----~~~~~~~~~~~ 255 (438)
T COG1502 212 DLARLFIQDWNLESGSSK--------------P---LLALV---RPP----------LQSL--SL----LPVGRGSTVQV 255 (438)
T ss_pred HHHHHHHHHhhhccCcCc--------------c---ccccc---ccc----------cccc--cc----cccccCcceEE
Confidence 999999999998643210 0 00000 000 0000 00 01112223677
Q ss_pred EeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHH
Q 005439 527 FRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME 606 (696)
Q Consensus 527 ~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ 606 (696)
+.+.|.. ..+. ....+.+.|+.+|.+|+++|||++|||+|+. +
T Consensus 256 ~~~~P~~---~~~~-----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~ 298 (438)
T COG1502 256 LSSGPDK---GLGS-----------------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------E 298 (438)
T ss_pred EecCCcc---ccch-----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------H
Confidence 7774221 1110 0122558999999999999999999999984 6
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005439 607 LALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD 668 (696)
Q Consensus 607 i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~ 668 (696)
+..+|..| +.+||+|.|++|.. +..+...+. .++...+..|.+.|+.
T Consensus 299 ~~~al~~a--~~~Gv~V~ii~~~~--~~~d~~~~~-----------~~~~~~~~~l~~~gv~ 345 (438)
T COG1502 299 LLAALKAA--ARRGVDVRIIIPSL--GANDSAIVH-----------AAYRAYLKELLEAGVK 345 (438)
T ss_pred HHHHHHHH--HhcCCEEEEEeCCC--CCCChHHHH-----------HHHHHHHHHHHHhCCE
Confidence 77888888 56999999999954 233333333 5777888889998983
No 10
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.95 E-value=7.9e-26 Score=246.59 Aligned_cols=283 Identities=15% Similarity=0.186 Sum_probs=178.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
-..|+++.++|++||++|+|++|+|.- +++. .| .+|.++|++||+|||+||||+ |..|+
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d~----~g--~~i~~aL~~aa~rGV~Vril~-D~~~~--------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNL-----RSTP----EG--RLILDKLKEAAESGVKVTILV-DEQSG--------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCCc----hH--HHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence 467999999999999999999998421 2232 44 899999999999999999994 97643
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
+...+.|+.+||++... .+.. .+..+.+|.|++|||++ +||+||+||++ +|-+
T Consensus 89 -------~~~~~~L~~~Gv~v~~~--~~~~---------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~ 141 (369)
T PHA03003 89 -------DKDEEELQSSNINYIKV--DIGK---------LNNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS 141 (369)
T ss_pred -------CccHHHHHHcCCEEEEE--eccc---------cCCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence 13456788899998732 1110 00012348899999998 99999999999 5544
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccccccccc
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL 480 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~~~ 480 (696)
..| ..+.|+|. ||+|.+|++.|.+.|+.+++.. +
T Consensus 142 ~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~----------------~ 175 (369)
T PHA03003 142 TIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS----------------V 175 (369)
T ss_pred ccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCC----------------c
Confidence 322 23579994 9999999999999998764431 0
Q ss_pred ccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCccchh
Q 005439 481 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK 560 (696)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 560 (696)
. .+.. .. ...|... ... ...+. ..+++.+ + |.... + ....
T Consensus 176 ~--~~~~-----~~-------~~~~~~~--~~~--~~~~~--~~~~~~s---~-----P~~~~---------~---~~~~ 215 (369)
T PHA03003 176 F--NRLC-----CA-------CCLPVST--KYH--INNPI--GGVFFSD---S-----PEHLL---------G---YSRT 215 (369)
T ss_pred c--cccc-----cc-------cCCcccc--ccc--ccCCC--cceEEec---C-----ChHHc---------C---CCCC
Confidence 0 0000 00 0000000 000 00000 1123333 2 21100 0 0123
Q ss_pred HHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchH
Q 005439 561 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 640 (696)
Q Consensus 561 sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~ 640 (696)
.++++|+.+|.+||++|+|+++||+|.... . . .-.....|..+|.+|. +++||+|+|++|.+.. .+ .
T Consensus 216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~---d--~--~~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~--~~-~-- 282 (369)
T PHA03003 216 LDADVVLHKIKSAKKSIDLELLSLVPVIRE---D--D--KTTYWPDIYNALIRAA-INRGVKVRLLVGSWKK--ND-V-- 282 (369)
T ss_pred cCHHHHHHHHHHHhhEEEEEEeccccEEee---C--C--CCccHHHHHHHHHHHH-HcCCCEEEEEEecCCc--CC-c--
Confidence 578999999999999999999999886211 0 0 0111236777777652 2699999999996421 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCCccc
Q 005439 641 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 685 (696)
Q Consensus 641 ~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~ 685 (696)
...++++.|+++|+. +.-.+.+|..++|.+
T Consensus 283 -------------~~~~~~~~L~~~G~~--~~i~vri~~~~~H~K 312 (369)
T PHA03003 283 -------------YSMASVKSLQALCVG--NDLSVKVFRIPNNTK 312 (369)
T ss_pred -------------hhhhHHHHHHHcCCC--CCceEeeecCCCCce
Confidence 112466779999963 233466676667855
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.94 E-value=4.6e-25 Score=243.67 Aligned_cols=283 Identities=14% Similarity=0.139 Sum_probs=175.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
...|+.+.+.|.+||++|+|+.+.|.|. +...-..| .+|.++|++||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~------d~~~~~~G--~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLS------DEVGTNFG--TMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecC------ccccchhH--HHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 3568999999999999999999988641 11000123 789999999999999999995 86431
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
.....+.|+++||++.... +.. ....++|+|++|||++ ++|+||+|+.. |+.+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~--~~~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYID--ITN----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEe--cCC----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 1123456888999987421 110 1235789999999998 99999999966 6643
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeE--eChHHHHHHHHHHHHHHhhcccchhhhhhccccccccc
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v--~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~~~~~ 478 (696)
. .+|+++.+ +||+|.+|++.|.++|+.+++... ..|..
T Consensus 140 ~-------------------------------n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~--------~~~~~- 179 (424)
T PHA02820 140 Q-------------------------------VKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP--------YNWKN- 179 (424)
T ss_pred h-------------------------------CCceEEEEecchHHHHHHHHHHHHHHHhhccCCC--------Ccccc-
Confidence 1 24677777 799999999999999997643210 00000
Q ss_pred ccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCccc
Q 005439 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 558 (696)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 558 (696)
.++ .. .+...|.. ....+....+++.+.+.. ..+ ..
T Consensus 180 ------~~~----~~----------~~~~~p~~----~~~~~~~~~~~~sssP~~---~~~-----------------~~ 215 (424)
T PHA02820 180 ------FYP----LY----------YNTDHPLS----LNVSGVPHSVFIASAPQQ---LCT-----------------ME 215 (424)
T ss_pred ------ccc----cc----------cccCCCcc----cccCCccceEEEeCCChh---hcC-----------------CC
Confidence 000 00 00000000 001111123444442110 000 00
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCc
Q 005439 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 638 (696)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~ 638 (696)
.....++|+.+|.+|+++|||+++||+|+.-. .+...... ..|..+|.+|. +.|||+|+|++|.+++ +.
T Consensus 216 r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~----~~~~~~yw--~~i~~AL~~AA-~~RGV~VriLvp~~~d----~~ 284 (424)
T PHA02820 216 RTNDLTALLSCIRNASKFVYVSVMNFIPIIYS----KAGKILFW--PYIEDELRRAA-IDRKVSVKLLISCWQR----SS 284 (424)
T ss_pred CCchHHHHHHHHHHHhhEEEEEEccccceeec----cCCcccch--HHHHHHHHHHH-HhCCCEEEEEEeccCC----CC
Confidence 13467999999999999999999999998210 00000000 25677776532 4699999999997655 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEE
Q 005439 639 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFY 678 (696)
Q Consensus 639 ~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~ 678 (696)
.+. ..+...++.|.++|+ .=|+++|
T Consensus 285 ~~~-----------~a~~~~l~~L~~~gv----~I~Vk~y 309 (424)
T PHA02820 285 FIM-----------RNFLRSIAMLKSKNI----NIEVKLF 309 (424)
T ss_pred ccH-----------HHHHHHHHHHhccCc----eEEEEEE
Confidence 333 233344566777887 3466666
No 12
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.92 E-value=1.5e-23 Score=232.40 Aligned_cols=275 Identities=15% Similarity=0.131 Sum_probs=170.9
Q ss_pred ccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHH
Q 005439 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (696)
Q Consensus 209 ~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~ 288 (696)
..++.++++.+| .++|++|+++|++|+++|+|++|+|. +|+ .| ..|.
T Consensus 22 ~~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~-------~D~----~g--~~il 68 (451)
T PRK09428 22 QSPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLE-------DDE----AG--REIL 68 (451)
T ss_pred cCcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEec-------CCc----hH--HHHH
Confidence 467889999997 68999999999999999999999884 232 34 8999
Q ss_pred HHHHHHhh--cCCEEEEEEeCCCCccC-ccCCCCCCcccCChHHHHhhhcCC--CcEEEecCCCCCCccchhhccccccc
Q 005439 289 ELLKYKSE--EGVRVLLLVWDDKTSHD-KLGVKTPGVMATHDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQQIVGTI 363 (696)
Q Consensus 289 ~lL~~aA~--rGV~VriLvwD~~gs~~-~~~~~~~~~~~~~~~~~~~~l~~~--gv~~~~~~~~p~~~~~~~~~~~~~~~ 363 (696)
++|.+|++ +||+|+||+ |...+.. ..|... ......+...++++ ||++.+.. .|.. ....+
T Consensus 69 ~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~-~p~~--------~~e~~ 134 (451)
T PRK09428 69 DALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYG-VPVN--------TREAL 134 (451)
T ss_pred HHHHHHHhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcC-Cccc--------cchhh
Confidence 99999854 899999996 9852110 000000 00123455556543 68876421 2221 11245
Q ss_pred ccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh
Q 005439 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 443 (696)
Q Consensus 364 ~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp 443 (696)
.++|+|++|||++ |+|+| .||.+.+... + .. ...|..++|+||
T Consensus 135 gr~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~--~------------------------~~--~r~Dry~~i~g~ 177 (451)
T PRK09428 135 GVLHLKGFIIDDT--------VLYSG-ASLNNVYLHQ--H------------------------DK--YRYDRYHLIRNA 177 (451)
T ss_pred hhceeeEEEECCC--------EEEec-ccccHHHhcC--C------------------------cc--cCcceEEEEeCc
Confidence 6899999999998 99997 7999954322 1 11 123778889999
Q ss_pred HHHHHHHHHHHHHHhhcccc-hhhhhhcccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCe
Q 005439 444 AAYDVLINFEQRWRKATKLT-ELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENW 522 (696)
Q Consensus 444 av~dl~~~F~qrWn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 522 (696)
++.|+...|++.|..+++.. .+... ..+... ..-..+..+...+... ....+. . .+..
T Consensus 178 ~la~~~~~fi~~~~~~~~~v~~l~~~--~~~~~~-~~~~~~~~~~~~l~~~-------~~~~~~---------~--~~~~ 236 (451)
T PRK09428 178 ELADSMVNFIQQNLLNSPAVNRLDQP--NRPKTK-EIKNDIRQFRQRLRDA-------AYQFQG---------Q--ANND 236 (451)
T ss_pred hHHHHHHHHHHHHhhccCcccccccc--ccccch-hhHHHHHHHHHHHhhh-------ccCccc---------c--cCCC
Confidence 99999999999998654321 00000 000000 0000000000000000 000000 0 1111
Q ss_pred eeeEEeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCc
Q 005439 523 HVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNL 602 (696)
Q Consensus 523 ~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~ 602 (696)
.+++...++.+ | ...+.+.++.+|.+|++.|+|.||||+|+.
T Consensus 237 ~~~v~p~~g~g-----~-------------------~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-------------- 278 (451)
T PRK09428 237 ELSVTPLVGLG-----K-------------------KNLLNKTIFHLMASAEQKLTICTPYFNLPA-------------- 278 (451)
T ss_pred CeEEeeeeccC-----C-------------------chHHHHHHHHHHhccCcEEEEEeCCcCCCH--------------
Confidence 23444332111 1 156889999999999999999999999983
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 603 IPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 603 i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
.+..+|.+|+ ++|++|.||+|...
T Consensus 279 ---~l~~~L~~a~--~rGv~V~Ii~~~~~ 302 (451)
T PRK09428 279 ---ILVRNIIRLL--RRGKKVEIIVGDKT 302 (451)
T ss_pred ---HHHHHHHHHH--hcCCcEEEEcCCcc
Confidence 6778888884 58899999999653
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=1.1e-22 Score=196.16 Aligned_cols=157 Identities=50% Similarity=0.801 Sum_probs=130.8
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
..+|||+|+|+|++|++||++|..++++++++.++..|...... .+. .......+++||||+|.+++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~g~sDPYv~V~l~~~ 69 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK--RPS----------SHRHVGKITSDPYATVDLAGA 69 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc--ccc----------ccccCCCCCcCeEEEEEECCe
Confidence 46899999999999999999998888888888766544332110 000 001123456899999999987
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g 171 (696)
.+++|++++++.||+|||+|.|.+.++...|.|+|+|++.+++++||++.+++.++..|...+.|++|....+++.+..|
T Consensus 70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~ 149 (158)
T cd04015 70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA 149 (158)
T ss_pred EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence 77899999999999999999999988888899999999999899999999999999989899999999877777778889
Q ss_pred eEEEEEEEe
Q 005439 172 SIQLELKFT 180 (696)
Q Consensus 172 ~i~l~l~~~ 180 (696)
+|+|+++|.
T Consensus 150 ~l~v~~~f~ 158 (158)
T cd04015 150 KIRVSLQFT 158 (158)
T ss_pred EEEEEEEEC
Confidence 999999984
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.81 E-value=2.6e-19 Score=164.59 Aligned_cols=117 Identities=23% Similarity=0.491 Sum_probs=101.3
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|+|+|+|++|++|+..+ .+. +||||++.+++++ .+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~-~kT 37 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAV-YET 37 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEE-EEe
Confidence 89999999999988655 343 9999999998877 599
Q ss_pred eeccC-CCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccc-cccCCceeEEEEEccCCCCCCCCCCceE
Q 005439 97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI 173 (696)
Q Consensus 97 ~~~~~-~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~-~l~~g~~~~~w~~l~~~~~~~~~~~g~i 173 (696)
+++.+ +.||+|||+|.|.+.+....|.|+|||++.++ |++||.+.|++. .+..|+..+.|++|....++ ...|+|
T Consensus 38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i 115 (121)
T cd04016 38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMI 115 (121)
T ss_pred EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEE
Confidence 99876 89999999999999887778999999999998 899999999995 57788889999999543333 457999
Q ss_pred EEEEEE
Q 005439 174 QLELKF 179 (696)
Q Consensus 174 ~l~l~~ 179 (696)
+|+|+|
T Consensus 116 ~l~l~y 121 (121)
T cd04016 116 NLVFSY 121 (121)
T ss_pred EEEEeC
Confidence 999987
No 15
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.78 E-value=4.5e-18 Score=156.65 Aligned_cols=120 Identities=26% Similarity=0.388 Sum_probs=106.4
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
+|.|+|++|++|+..+..+. +||||++.+++....+|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~ 38 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK 38 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence 48999999999998775543 899999999886778999
Q ss_pred eccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEEE
Q 005439 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE 176 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (696)
+++++.||+|||+|.|.+......|.|+|||++.++ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|+|.
T Consensus 39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~ 116 (121)
T cd04042 39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLV 116 (121)
T ss_pred eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEE
Confidence 999999999999999999887788999999999985 8999999999999998889999999954433 2568999999
Q ss_pred EEEec
Q 005439 177 LKFTP 181 (696)
Q Consensus 177 l~~~~ 181 (696)
++|.|
T Consensus 117 ~~~~~ 121 (121)
T cd04042 117 VTLTP 121 (121)
T ss_pred EEECC
Confidence 99986
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=4.7e-18 Score=157.35 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=100.2
Q ss_pred EEEEEEEeeC---CCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEE
Q 005439 19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (696)
Q Consensus 19 L~v~i~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (696)
|+|+|++|++ |+.+|..+. +||||++.+++++ .|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r 38 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR 38 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence 8999999999 666555443 9999999998876 59
Q ss_pred eeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCC-------CCeeeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~-------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (696)
|++++++.||+|||+|.|.+..+...|+|+|||++.+ ++++||++.++|.++..+.....||+|.....++.+
T Consensus 39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 118 (126)
T cd08379 39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118 (126)
T ss_pred cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence 9999999999999999999988888899999999886 699999999999999999999999999766555667
Q ss_pred CCceEEE
Q 005439 169 PGASIQL 175 (696)
Q Consensus 169 ~~g~i~l 175 (696)
..|+|++
T Consensus 119 ~~g~l~~ 125 (126)
T cd08379 119 KMGELEC 125 (126)
T ss_pred CCcEEEe
Confidence 7888875
No 17
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.77 E-value=8.9e-18 Score=158.81 Aligned_cols=128 Identities=23% Similarity=0.459 Sum_probs=112.3
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
...+...|.|.|++|++||.+ .+|||++.+++.
T Consensus 6 ~~R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~ 38 (146)
T cd04013 6 SRRTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKT 38 (146)
T ss_pred ceEEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCE
Confidence 456889999999999999852 479999999999
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCC-CC----CCeeeEEEecccccccCCceeEEEEEccCCCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD-VF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~-~~----~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~ 166 (696)
.++||+++.++.||.|+|+|.|++.++...++|.|+..+ .. ++++||++.||+.++..|..++.||+|....+.+
T Consensus 39 ~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 39 LYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred EEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 999999999999999999999999988889999997543 33 4799999999999999999999999998776665
Q ss_pred -------CCCCceEEEEEEEecCCCCC
Q 005439 167 -------PKPGASIQLELKFTPCDKNP 186 (696)
Q Consensus 167 -------~~~~g~i~l~l~~~~~~~~p 186 (696)
.+..++|+++++|.+....|
T Consensus 119 ~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 119 KSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccccCCCCEEEEEEEEEEeeeCC
Confidence 46678999999999987655
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.76 E-value=5.3e-18 Score=157.37 Aligned_cols=117 Identities=21% Similarity=0.493 Sum_probs=99.8
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEeee
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (696)
+.|+|++|++|+.++..+. +||||++.+++.+ .+|++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v 37 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV 37 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence 5799999999998765543 8999999998765 69999
Q ss_pred ccCCCCCeeeeEEEEeecC------CCCeEEEEEEeCCCCC-CeeeEEEeccccccc--CCceeEEEEEccCCCCCCCCC
Q 005439 99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP 169 (696)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~------~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~--~g~~~~~w~~l~~~~~~~~~~ 169 (696)
++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|+|.++. .+.....||+|....+++.+.
T Consensus 38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~ 117 (126)
T cd08682 38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE 117 (126)
T ss_pred ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence 9999999999999999877 3567999999999987 899999999999987 677788999996444444567
Q ss_pred CceEEEEEE
Q 005439 170 GASIQLELK 178 (696)
Q Consensus 170 ~g~i~l~l~ 178 (696)
.|+|+|++.
T Consensus 118 ~Gei~l~~~ 126 (126)
T cd08682 118 RGEIEVDIQ 126 (126)
T ss_pred cceEEEEeC
Confidence 899999873
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=1.8e-17 Score=152.81 Aligned_cols=99 Identities=25% Similarity=0.448 Sum_probs=87.2
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD 158 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (696)
+||||.+.+++...++|+++++|.||+|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...+.||+
T Consensus 22 sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 101 (121)
T cd08401 22 RDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP 101 (121)
T ss_pred cCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence 899999999877678999999999999999999999876678999999999986 8999999999999988888899999
Q ss_pred ccCCCCCCCCCCceEEEEEEE
Q 005439 159 IIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 159 l~~~~~~~~~~~g~i~l~l~~ 179 (696)
| .+.....+..|+|+|+++|
T Consensus 102 L-~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 102 L-QPVDADSEVQGKVHLELRL 121 (121)
T ss_pred E-EccCCCCcccEEEEEEEEC
Confidence 9 4433333468999999875
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=3.7e-17 Score=151.80 Aligned_cols=121 Identities=21% Similarity=0.412 Sum_probs=101.5
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (696)
...|+|+|++|++|+..+ .+||||++.+++..+.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---------------------------------------------~~DPYv~v~l~~~~~~k 37 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---------------------------------------------VPHPYCVISLNEVKVAR 37 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---------------------------------------------CCCeeEEEEECCEeEEE
Confidence 356999999999998532 18999999998877789
Q ss_pred eeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceE
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i 173 (696)
|++. ++.||.|||+|.|.+..+. ..++|.|+|.+.++ +++||.+.++|..+..+...+.||+|......+.+..|+|
T Consensus 38 T~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i 116 (126)
T cd08400 38 TKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSL 116 (126)
T ss_pred eecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEE
Confidence 9985 5899999999999976554 56899999998887 8999999999999998888999999954433344668999
Q ss_pred EEEEEEecC
Q 005439 174 QLELKFTPC 182 (696)
Q Consensus 174 ~l~l~~~~~ 182 (696)
+|+++|.+.
T Consensus 117 ~l~l~~~~~ 125 (126)
T cd08400 117 RIRARYSHE 125 (126)
T ss_pred EEEEEEEcc
Confidence 999999874
No 21
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=3.3e-17 Score=150.08 Aligned_cols=116 Identities=26% Similarity=0.507 Sum_probs=99.2
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|++.+..+. +||||++.+++.. .+|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT 37 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT 37 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence 789999999999998775554 8999999998754 689
Q ss_pred eeccC-CCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 005439 97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (696)
Q Consensus 97 ~~~~~-~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~ 174 (696)
+++.+ +.||+|||+|.|.+..+ ...|.|+|||++..++++||++.+++.++..+.....|++|.. .+ +..|+|+
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~ 113 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY 113 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence 98754 78999999999999875 4679999999998889999999999999877777889999943 22 4689999
Q ss_pred EEEEE
Q 005439 175 LELKF 179 (696)
Q Consensus 175 l~l~~ 179 (696)
|+++|
T Consensus 114 l~l~f 118 (118)
T cd08681 114 LELTF 118 (118)
T ss_pred EEEEC
Confidence 99986
No 22
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=1.1e-16 Score=148.71 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=90.5
Q ss_pred CCcEEEEEECC-eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEE
Q 005439 80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY 157 (696)
Q Consensus 80 ~dpyv~v~~~~-~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~ 157 (696)
+||||++.++. ....+|++++++.||+|||.|.|.+......|.|+|||.+..+ +++||++.+++.++..+.....|+
T Consensus 18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 97 (126)
T cd08678 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF 97 (126)
T ss_pred cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence 89999999975 3457999999999999999999999776778999999999987 899999999999999887788999
Q ss_pred EccCCCCCCCCCCceEEEEEEEecCCC
Q 005439 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (696)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (696)
+|....+...+..|+|.+++.|.+.+.
T Consensus 98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 98 PLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EecCCCCCCCCcceEEEEEEEEecccc
Confidence 995333333467999999999988764
No 23
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=6.3e-17 Score=150.39 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|.|+|++|++|+..+..+. +||||++.+++.. .+|+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~ 37 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR 37 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence 48999999999998765443 8999999998866 5999
Q ss_pred eccCCCCCeeeeEEEEeecCCC----CeEEEEEEeCCCC--CCeeeEEEeccccccc-CCceeEEEEEccCCCCCCCCCC
Q 005439 98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG 170 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~~~~--~~~~iG~~~i~l~~l~-~g~~~~~w~~l~~~~~~~~~~~ 170 (696)
+++++.||.|||.|.|.+..+. ..|.|+|||.+.+ ++++||++.+++.++. .++....||+|. ..+...+..
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~~~~ 116 (127)
T cd04022 38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFSRVR 116 (127)
T ss_pred eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCCCcc
Confidence 9999999999999999998643 4689999999887 4899999999999987 577788999994 444334578
Q ss_pred ceEEEEEEEe
Q 005439 171 ASIQLELKFT 180 (696)
Q Consensus 171 g~i~l~l~~~ 180 (696)
|+|.|++.++
T Consensus 117 G~l~l~~~~~ 126 (127)
T cd04022 117 GEIGLKVYIT 126 (127)
T ss_pred EEEEEEEEEc
Confidence 9999999875
No 24
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=1.2e-16 Score=152.71 Aligned_cols=123 Identities=26% Similarity=0.397 Sum_probs=103.2
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|.|+|++|++|++++..+. +||||++.+++.. .+|+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk 37 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTR 37 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeE
Confidence 38999999999998776554 9999999999855 6999
Q ss_pred eccC-CCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCC----ceeEEEEEccCCCC-----C
Q 005439 98 VLKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----S 165 (696)
Q Consensus 98 ~~~~-~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~l~~~~~-----~ 165 (696)
+..+ +.||+|||+|.|.+..+. ..+.|+|+|.+..+ +++||.+.|+|.++..+ .....||+|....+ +
T Consensus 38 ~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 38 PSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred eccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccc
Confidence 9877 699999999999997754 57899999998875 89999999999998643 45789999965543 4
Q ss_pred CCCCCceEEEEEEEecCC
Q 005439 166 PPKPGASIQLELKFTPCD 183 (696)
Q Consensus 166 ~~~~~g~i~l~l~~~~~~ 183 (696)
+.+..|+|+|++.|.+..
T Consensus 118 ~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 118 KRKFASRIHLRLCLDGGY 135 (150)
T ss_pred cCcccccEEEEEEecCcc
Confidence 456789999999998653
No 25
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.69 E-value=1.8e-16 Score=146.25 Aligned_cols=97 Identities=25% Similarity=0.461 Sum_probs=83.1
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccCC-----cee
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI 153 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g-----~~~ 153 (696)
+||||++.+++.. .+|++++++.||+|||+|.|.+..+ ...|.|+|||++..++++||.+.+++.++..+ ...
T Consensus 17 ~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 95 (121)
T cd08378 17 NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA 95 (121)
T ss_pred CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence 8999999998754 7999999999999999999998774 56799999999988899999999999998643 235
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
..||+|....+ .+..|+|+|+++|
T Consensus 96 ~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 96 PQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred cceEEccCCCC--CccceEEEEEEEe
Confidence 68999954433 4678999999998
No 26
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=4.6e-16 Score=145.53 Aligned_cols=127 Identities=24% Similarity=0.468 Sum_probs=103.0
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
+.|.|+|+|++|++|+..+..+.. ++ +....+.+||||++.+++....
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~-------------------~~-------------~~~~~g~~dpyv~v~~~~~~~~ 49 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH-------------------AV-------------PKKGSQLLDPYVSIDVDDTHIG 49 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh-------------------cc-------------cccCccCcCcEEEEEECCEEEe
Confidence 568999999999999976643210 00 0000123899999999987778
Q ss_pred EeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccC--CceeEEEEEccCCCCCCCCCCc
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA 171 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~l~~~~~~~~~~~g 171 (696)
+|++++++.||.|||+|.|.+. ....|.|.|++++.++ +++||.+.++|.++.. +...+.|++| ++.|
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~~G 120 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL--------EPQG 120 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------cCCc
Confidence 9999999999999999999997 5578999999998876 7999999999999886 5678899999 3579
Q ss_pred eEEEEEEEecC
Q 005439 172 SIQLELKFTPC 182 (696)
Q Consensus 172 ~i~l~l~~~~~ 182 (696)
+|+|+++|...
T Consensus 121 ~l~l~~~~~~~ 131 (132)
T cd04014 121 KLHVKIELKGS 131 (132)
T ss_pred EEEEEEEEecC
Confidence 99999998764
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=5.6e-16 Score=141.43 Aligned_cols=113 Identities=26% Similarity=0.383 Sum_probs=98.6
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|+|+|++|++|+..+..+. +||||++.+++.. .+|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~ 37 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSK 37 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eecc
Confidence 37899999999998765443 8999999998755 7999
Q ss_pred eccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 005439 98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l 175 (696)
+++++.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.++..++..+.|++| .+ ..|+|++
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L-~~------~~G~~~~ 110 (116)
T cd08376 38 VCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-ED------GEGSLLL 110 (116)
T ss_pred cccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEc-cC------CCcEEEE
Confidence 999999999999999998876 577999999999986 89999999999999988889999999 32 2599999
Q ss_pred EEEEe
Q 005439 176 ELKFT 180 (696)
Q Consensus 176 ~l~~~ 180 (696)
.+.|.
T Consensus 111 ~~~~~ 115 (116)
T cd08376 111 LLTLT 115 (116)
T ss_pred EEEec
Confidence 98874
No 28
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=5.3e-16 Score=142.14 Aligned_cols=117 Identities=31% Similarity=0.545 Sum_probs=100.0
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+.++..+. +||||++.+.+.. .+|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T 37 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT 37 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence 789999999999998765543 8999999998765 699
Q ss_pred eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l 175 (696)
++++++.||.|||+|.|.+......+.|+|||++..+ +++||++.+++.++..+. ..|++|... ....+..|+|.|
T Consensus 38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~-~~~~~~~G~i~l 114 (119)
T cd08377 38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDK-KLRTRAKGSILL 114 (119)
T ss_pred ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECccc-CCCCceeeEEEE
Confidence 9999999999999999999876778999999999875 899999999999987664 579999543 333356999999
Q ss_pred EEEE
Q 005439 176 ELKF 179 (696)
Q Consensus 176 ~l~~ 179 (696)
++.+
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 9886
No 29
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.68 E-value=4.6e-16 Score=143.45 Aligned_cols=117 Identities=25% Similarity=0.513 Sum_probs=99.1
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEeee
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (696)
|.|+|++|++|++++..+. +||||++.+++..+.+|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~v 39 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTAT 39 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeeee
Confidence 8999999999998876554 8999999998877789999
Q ss_pred ccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCC-ceeEEEEEccCCCCCCCCCCceEEEE
Q 005439 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQLE 176 (696)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~l~~~~~~~~~~~g~i~l~ 176 (696)
++++.||+|||.|.|.+......|.|+|||++.++ +++||.+.+++..+..+ ...+.|++|. +........|+|+|+
T Consensus 40 ~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~-~~~~~~~~~G~i~l~ 118 (121)
T cd04054 40 VWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLT-EVDPDEEVQGEIHLE 118 (121)
T ss_pred EcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECe-eeCCCCccccEEEEE
Confidence 99999999999999999877788999999999987 89999999999888753 3478999994 322223458999988
Q ss_pred EE
Q 005439 177 LK 178 (696)
Q Consensus 177 l~ 178 (696)
++
T Consensus 119 ~~ 120 (121)
T cd04054 119 LS 120 (121)
T ss_pred EE
Confidence 75
No 30
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.4e-16 Score=146.40 Aligned_cols=120 Identities=22% Similarity=0.412 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe------
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------ 91 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------ 91 (696)
.|+|+|++|++|+.++..+. +||||++.+.+.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~ 38 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI 38 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence 48999999999998775554 899999999653
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCce------eEEEEEccCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG 164 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~l~~~~~ 164 (696)
...+|++++++.||.|||+|.|.+......|.|+|||.+.++ +++||.+.+++.++..+.. ...||+|. +..
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~ 117 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRS 117 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecC
Confidence 246999999999999999999999876778999999999987 8999999999999885433 45899994 333
Q ss_pred CCCCCCceEEEEEEEe
Q 005439 165 SPPKPGASIQLELKFT 180 (696)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (696)
...+..|+|+|++.|.
T Consensus 118 ~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 118 SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCcceeEEEEEEeeC
Confidence 3346799999999984
No 31
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=4.6e-16 Score=142.85 Aligned_cols=113 Identities=27% Similarity=0.531 Sum_probs=96.9
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeEEEe
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART 96 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~T 96 (696)
|.|+|++|++|+..+..+. +||||++.+.+ ..+.+|
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT 39 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT 39 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence 7899999999997665443 89999999964 345799
Q ss_pred eeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l 175 (696)
++++++.||+|||+|.|.+.... ..|.|+|||++.+++++||++.+++.++..|.....|++| .+ ++.|+|.+
T Consensus 40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L-~~-----~~~g~l~~ 113 (119)
T cd04036 40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL-NP-----QGKEELEV 113 (119)
T ss_pred ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEEC-CC-----CCCceEEE
Confidence 99999999999999999987653 4589999999988889999999999999999999999999 33 24788888
Q ss_pred EEEE
Q 005439 176 ELKF 179 (696)
Q Consensus 176 ~l~~ 179 (696)
++.+
T Consensus 114 ~~~~ 117 (119)
T cd04036 114 EFLL 117 (119)
T ss_pred EEEe
Confidence 8865
No 32
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=3.9e-16 Score=143.86 Aligned_cols=120 Identities=31% Similarity=0.468 Sum_probs=99.6
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eeEEE
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (696)
|.|+|+|++|++|+..+..+. .+||||++.+.+ ....+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k 40 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR 40 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence 789999999999996442221 289999999988 56689
Q ss_pred eeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEE-EEEccCCCCCCCCCCceE
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASI 173 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~-w~~l~~~~~~~~~~~g~i 173 (696)
|++++++.+|.|||.|.|.+......|.|+|||.+..+ +++||.+.+++.++..+..... |..+ ...+ +..|+|
T Consensus 41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~---k~~G~i 116 (124)
T cd04044 41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNG---KPVGEL 116 (124)
T ss_pred eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCC---ccceEE
Confidence 99999999999999999999866788999999999886 8999999999999987666554 4444 3333 468999
Q ss_pred EEEEEEec
Q 005439 174 QLELKFTP 181 (696)
Q Consensus 174 ~l~l~~~~ 181 (696)
+++|+|.|
T Consensus 117 ~~~l~~~p 124 (124)
T cd04044 117 NYDLRFFP 124 (124)
T ss_pred EEEEEeCC
Confidence 99999987
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=6.8e-16 Score=143.19 Aligned_cols=120 Identities=22% Similarity=0.419 Sum_probs=99.7
Q ss_pred cEEEEEEEEeeCCCCCCC--cchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
|.|.|+|++|++|+..+. .+. +||||++.++... .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~ 37 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F 37 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence 789999999999997765 333 8999999997755 6
Q ss_pred EeeeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCCCC-CeeeEEEeccccccc---CCceeEEEEEccCCC-CCCCC
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA---TGELISRWYDIIAPS-GSPPK 168 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~---~g~~~~~w~~l~~~~-~~~~~ 168 (696)
+|++++++.||.|||+|.|.+.. ....|.|+|||++..+ +++||.+.+++.++. .......||+|.... ++...
T Consensus 38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~ 117 (128)
T cd04024 38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117 (128)
T ss_pred ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence 99999999999999999999987 4678999999999885 899999999999987 234467999995432 22345
Q ss_pred CCceEEEEEEE
Q 005439 169 PGASIQLELKF 179 (696)
Q Consensus 169 ~~g~i~l~l~~ 179 (696)
..|+|+|++.|
T Consensus 118 ~~G~i~l~~~~ 128 (128)
T cd04024 118 VSGEIHLQFSW 128 (128)
T ss_pred ccceEEEEEEC
Confidence 69999999875
No 34
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=1e-15 Score=140.41 Aligned_cols=120 Identities=26% Similarity=0.444 Sum_probs=98.6
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+..+.... ....+.+||||++.+++ ...+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~------------------------------------~~~~g~~dPyv~v~~~~-~~~kT 43 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG------------------------------------GLVKGKSDPYVIVRVGA-QTFKS 43 (121)
T ss_pred CeEEEEEEEccCCcccccccc------------------------------------cCCCCCcCCEEEEEECC-EeEEc
Confidence 689999999999997664210 00011389999999987 45799
Q ss_pred eeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEE
Q 005439 97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l 175 (696)
++++++.||+|||+|.|.+.. ....|.|+|||++..++++||.+.+++.++..+...+.||+|... ..|+|+|
T Consensus 44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 999999999999999999875 456899999999888889999999999999877778899999322 4799999
Q ss_pred EEEE
Q 005439 176 ELKF 179 (696)
Q Consensus 176 ~l~~ 179 (696)
+++|
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 9875
No 35
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=6e-16 Score=142.89 Aligned_cols=105 Identities=25% Similarity=0.490 Sum_probs=90.7
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
+.+..+.|.|+|++|++|+.++ .+. +||||++.+..
T Consensus 8 l~y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~ 44 (122)
T cd08381 8 ISYKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPD 44 (122)
T ss_pred EEEeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeC
Confidence 4566899999999999999877 443 89999999953
Q ss_pred ---eeEEEeeeccCCCCCeeeeEEEEee-cC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ---ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ---~~~~~T~~~~~~~~P~wne~f~~~~-~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|++ +. ....|.|+|||++.++ +++||++.|+|.++..++....||+|
T Consensus 45 ~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 45 PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3457999999999999999999997 32 3467899999999987 89999999999999988888999997
No 36
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.65 E-value=6.3e-16 Score=140.51 Aligned_cols=101 Identities=18% Similarity=0.325 Sum_probs=85.8
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
...|.|+|+|++|++|+ . .+. +||||++.+..
T Consensus 11 ~~~~~L~V~vikA~~L~-~--~g~------------------------------------------sDPYVKv~L~~~~k 45 (118)
T cd08677 11 KQKAELHVNILEAENIS-V--DAG------------------------------------------CECYISGCVSVSEG 45 (118)
T ss_pred CcCCEEEEEEEEecCCC-C--CCC------------------------------------------CCeEEEEEEcCCcC
Confidence 45689999999999998 2 222 89999999953
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.+|++.++|.||+|||+|.|.++.. ...|.|+|||.|.++ +++||++.+++.++..+...+.|.+|
T Consensus 46 ~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 46 QKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred ccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 2467999999999999999999998874 456999999999998 89999999999988766677788764
No 37
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.4e-15 Score=144.16 Aligned_cols=107 Identities=21% Similarity=0.397 Sum_probs=90.7
Q ss_pred EeEccEEEEEEEEeeCCCCCCC-cchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
.+-.|.|.|+|++|+||+.++. .+. +||||++++..
T Consensus 25 ~y~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------------------sDPYVKv~Llp~ 62 (146)
T cd04028 25 YDKKGQLEVEVIRARGLVQKPGSKVL------------------------------------------PAPYVKVYLLEG 62 (146)
T ss_pred EeCCCEEEEEEEEeeCCCcccCCCCC------------------------------------------cCCeEEEEEECC
Confidence 4678999999999999987542 232 89999999933
Q ss_pred -e--eEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEE-eCCCCC-CeeeEEEecccccccCCceeEEEEEccC
Q 005439 91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (696)
Q Consensus 91 -~--~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (696)
. .+.||++++++.||+|||+|.|.+......|.|+|| +.+.++ +++||.+.|+|+.+..+.....||+|..
T Consensus 63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 2 357999999999999999999999866678999999 567776 8999999999999988888899999953
No 38
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=2.1e-15 Score=139.26 Aligned_cols=118 Identities=26% Similarity=0.430 Sum_probs=98.0
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|+|+|++|++|+.++..+. +||||++.+++.. .+|+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~ 37 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETS 37 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eece
Confidence 38999999999998775443 8999999998755 6999
Q ss_pred eccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC---CCCCCce
Q 005439 98 VLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGAS 172 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~---~~~~~g~ 172 (696)
+++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.+++.++..+.....||+|...... ..+..|.
T Consensus 38 v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~ 117 (123)
T cd04025 38 VVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGS 117 (123)
T ss_pred eecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEE
Confidence 9999999999999999998754 67999999999887 89999999999999877777899999542222 3356788
Q ss_pred EEEEEE
Q 005439 173 IQLELK 178 (696)
Q Consensus 173 i~l~l~ 178 (696)
|+|.++
T Consensus 118 l~~~~~ 123 (123)
T cd04025 118 LRLKVR 123 (123)
T ss_pred EEEEeC
Confidence 888763
No 39
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.64 E-value=3e-15 Score=140.87 Aligned_cols=114 Identities=24% Similarity=0.391 Sum_probs=96.3
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|++.+..+. +||||++.+++.. .+|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT 51 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT 51 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence 889999999999998775554 8999999998765 799
Q ss_pred eeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccC-----CceeEEEEEccCCCCCCCCC
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP 169 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~-----g~~~~~w~~l~~~~~~~~~~ 169 (696)
++++++.||.|||+|.|.+..+. ..|.|+|||.+.++ +++||.+.+++.++.. ......|..+. . ..
T Consensus 52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-~-----~~ 125 (136)
T cd08375 52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-E-----VP 125 (136)
T ss_pred cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-c-----cc
Confidence 99999999999999999997654 56899999999887 8999999999998875 33455676662 1 45
Q ss_pred CceEEEEEEE
Q 005439 170 GASIQLELKF 179 (696)
Q Consensus 170 ~g~i~l~l~~ 179 (696)
.|+|+|++.|
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 7999999986
No 40
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.5e-15 Score=139.40 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=84.5
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-----C-e
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-----Q-A 91 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~-~ 91 (696)
.|+|+|++|++|+.++. +. +||||+|++- . .
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~ 37 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK 37 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence 48999999999997652 32 8999999982 2 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC----CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
++.+|++++++.||+|||+|.|.+.... ..|.|.|+|++..+ +++||++.+|+.++..++....|++|
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L 110 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence 3468999999999999999999997532 35899999999777 89999999999999988889999999
No 41
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.63 E-value=1e-15 Score=140.66 Aligned_cols=105 Identities=18% Similarity=0.353 Sum_probs=89.4
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
+.+-++.|.|+|++|++|++++ .+. +||||++.+..
T Consensus 7 ~~~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~ 43 (119)
T cd08685 7 IEGQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPD 43 (119)
T ss_pred EEEcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeC
Confidence 4467899999999999999776 333 89999999943
Q ss_pred ---eeEEEeeeccCCCCCeeeeEEEEeecCC--CCeEEEEEEeCCCCC--CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ---~~~~~T~~~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~~~~~--~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|.+... ...|.|+||+.+... +++||.+.|++.++..++.+++||.|
T Consensus 44 ~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 44 KEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3456999999999999999999998763 246889999998764 68999999999999888889999976
No 42
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=144.42 Aligned_cols=97 Identities=29% Similarity=0.566 Sum_probs=89.0
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeE
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (696)
.+.|.|+|+|++|.+|...|..++ +||||.+.+++++
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~- 39 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK- 39 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee-
Confidence 468999999999999998887554 9999999999988
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
.||++++++.||+|||.|+|.+.++...|+++|||+|.++ ||++|.++|++..+......
T Consensus 40 lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 40 LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 5999999999999999999999999999999999999998 99999999999988865443
No 43
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.62 E-value=1.1e-14 Score=135.26 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=101.2
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (696)
+..|+|+|++|++|+..+..+. +||||++.+++.. .+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k 38 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR 38 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence 4679999999999997765443 9999999998875 69
Q ss_pred eeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCC-CCCCCCCceEE
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS-GSPPKPGASIQ 174 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~-~~~~~~~g~i~ 174 (696)
|++++++.||+|||.|.|.+..+...|.|+|||++..++++||.+.+++.++.. ....|++|.... ....+..|+|.
T Consensus 39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~ 116 (126)
T cd04046 39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTIS 116 (126)
T ss_pred eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEE
Confidence 999999999999999999988888889999999998889999999999987643 344778884221 23446799999
Q ss_pred EEEEEecC
Q 005439 175 LELKFTPC 182 (696)
Q Consensus 175 l~l~~~~~ 182 (696)
+++.+.+.
T Consensus 117 ~~~~~~~~ 124 (126)
T cd04046 117 VKVTSSDD 124 (126)
T ss_pred EEEEEccc
Confidence 99987664
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=7.7e-15 Score=136.31 Aligned_cols=103 Identities=35% Similarity=0.593 Sum_probs=90.1
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~ 155 (696)
+||||++.+.+.. .+|++++++.||+|||+|.|.+..+ ...|.|+|||++..+ +++||.+.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998765 6999999999999999999999764 567999999999886 8999999999999998888899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEEecCCCC
Q 005439 156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (696)
|++|....+++ ..|+|+++++|.|.+.+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99996554432 46999999999998764
No 45
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.61 E-value=4.7e-15 Score=137.03 Aligned_cols=103 Identities=33% Similarity=0.540 Sum_probs=90.0
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (696)
-.+.|.|+|++|++|+.++..+. +||||++.+.+ ..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~ 51 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKK 51 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999997765443 89999999843 34
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
+.+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+.|++|
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 67999999999999999999998763 457999999999887 89999999999999888889999998
No 46
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.60 E-value=4.7e-15 Score=137.07 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=89.8
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeeE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV 93 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~~ 93 (696)
.|.|.|+|++|++|+.++..+. +||||++.+ .+..+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~ 52 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT 52 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence 5889999999999998775543 899999999 33456
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++..++..+.|++|
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 8999999999999999999998764 357999999999887 89999999999999877788999998
No 47
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=1.4e-14 Score=136.10 Aligned_cols=119 Identities=19% Similarity=0.356 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|+|+|++|++|+.++..+. +||||++.+.+.. .+|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~ 38 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE 38 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence 58999999999998776554 8999999998765 6999
Q ss_pred eccCCCCCeeeeEEEEeecCC----------CCeEEEEEEeCCCCC-CeeeEEEec-cccccc---CCceeEEEEEccCC
Q 005439 98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIA---TGELISRWYDIIAP 162 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~----------~~~l~i~v~d~~~~~-~~~iG~~~i-~l~~l~---~g~~~~~w~~l~~~ 162 (696)
+++++.||.|||.|.|.+... ...|.|+|||++..+ +++||++.+ ++..+. .+.....|++|. .
T Consensus 39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~ 117 (135)
T cd04017 39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K 117 (135)
T ss_pred eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence 999999999999999985321 245899999999987 799999987 544444 246778999994 3
Q ss_pred CCCCCCCCceEEEEEEEecCC
Q 005439 163 SGSPPKPGASIQLELKFTPCD 183 (696)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~~~~ 183 (696)
.+ ...|+|.|++.+.+.+
T Consensus 118 ~~---~~~Geil~~~~~~~~~ 135 (135)
T cd04017 118 GG---QSAGELLAAFELIEVT 135 (135)
T ss_pred CC---CchhheeEEeEEEEeC
Confidence 22 3689999999998853
No 48
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.60 E-value=4.2e-15 Score=134.67 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCC-cchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 19 LDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
|.|+|++|++|+.++. .+. +||||++.+++ .+.||+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~-~~~kT~ 37 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------------------TDAFVEVKFGS-TTYKTD 37 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------------------CCceEEEEECC-eeEecc
Confidence 6899999999997763 222 89999999987 557999
Q ss_pred eccCCCCCee-eeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccC---CceeEEEEEccC
Q 005439 98 VLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA 161 (696)
Q Consensus 98 ~~~~~~~P~w-ne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l~~ 161 (696)
+++++.||.| ||+|.|.+... ...|.|+|||++.++ +++||++.+++.++.. +..+++||+|++
T Consensus 38 v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999 99999999874 357999999999987 7999999999999976 456889999964
No 49
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.60 E-value=8.4e-15 Score=131.50 Aligned_cols=96 Identities=27% Similarity=0.520 Sum_probs=84.2
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEeee
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (696)
|.|+|++|++|+..+..+. +||||++.+++.. .+|++
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT~v 38 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKTT-QKSKV 38 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCEE-EeCcc
Confidence 7899999999997664443 9999999998854 79999
Q ss_pred ccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccCC--ceeEEEEEc
Q 005439 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDI 159 (696)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g--~~~~~w~~l 159 (696)
++++.||+|||+|.|.+..+ ...|.|+|+|.+. +++||++.++|.++..+ ...+.||+|
T Consensus 39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L 100 (105)
T cd04050 39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPL 100 (105)
T ss_pred ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEec
Confidence 99999999999999999985 4679999999887 88999999999998754 468899999
No 50
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.59 E-value=7.6e-15 Score=136.14 Aligned_cols=104 Identities=22% Similarity=0.396 Sum_probs=88.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|.|.|+|++|++|+..+.... .+||||++.+..
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyVkv~l~p~~~~ 51 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKK-----------------------------------------RSNPYVKTYLLPDKSR 51 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCC-----------------------------------------CCCcEEEEEEEcCCcc
Confidence 57889999999999997653211 289999999842
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.++...+..+.|++|
T Consensus 52 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 52 QSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3356999999999999999999998763 457999999999887 89999999999999988889999998
No 51
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.59 E-value=6e-15 Score=136.81 Aligned_cols=102 Identities=23% Similarity=0.401 Sum_probs=87.4
Q ss_pred ccEEEEEEEEeeCCCCCCCc-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
.+.|.|+|++|++|++++.. +. +||||++.+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------------------~dpyVkv~l~p~~~~ 51 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------------------SDPYVKTYLLPDKSN 51 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 35899999999999987643 32 89999999832
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|++... ...|.|+|||.+.++ +++||.+.|+|.++..++....||+|
T Consensus 52 ~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 52 RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 2346999999999999999999998753 457999999999887 89999999999999877778899997
No 52
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=2.4e-14 Score=132.59 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=95.8
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeEEE
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR 95 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~~~ 95 (696)
.|.|+|++|++|+..+..+. +||||++.+.+ ....+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k 39 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK 39 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence 58999999999998765443 89999999864 34579
Q ss_pred eeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEecccccccC---CceeEEEEEccCCCCCCCCCC
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG 170 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l~~~~~~~~~~~ 170 (696)
|++++++.||.|||+|.|.+... ...|.|+|||.+.++ +++||++.++|..+.. +...+.|++| . +.
T Consensus 40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l-~-------~~ 111 (126)
T cd04043 40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-D-------TQ 111 (126)
T ss_pred ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-C-------CC
Confidence 99999999999999999999875 467899999999886 8999999999987643 4467789999 2 36
Q ss_pred ceEEEEEEEecC
Q 005439 171 ASIQLELKFTPC 182 (696)
Q Consensus 171 g~i~l~l~~~~~ 182 (696)
|+|+|.+.+.-.
T Consensus 112 g~i~l~~~~~~~ 123 (126)
T cd04043 112 GRLLLRVSMEGE 123 (126)
T ss_pred CeEEEEEEEeee
Confidence 899999887653
No 53
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.2e-14 Score=137.13 Aligned_cols=100 Identities=19% Similarity=0.376 Sum_probs=84.1
Q ss_pred CCcEEEEEE----CCeeEEEeeeccCCCCCeeeeEEEEeecCC---------CCeEEEEEEeCCCC--CCeeeEEEeccc
Q 005439 80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA 144 (696)
Q Consensus 80 ~dpyv~v~~----~~~~~~~T~~~~~~~~P~wne~f~~~~~~~---------~~~l~i~v~d~~~~--~~~~iG~~~i~l 144 (696)
+||||++++ ....+.||+++++|.||+|||+|.|.+... ...|.|+|||.+.+ +|++||++.++|
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 334568999999999999999999999765 24699999999986 389999999999
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEecC
Q 005439 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 145 ~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (696)
..+.....+..|++|..... ..+|+|+++++....
T Consensus 105 ~~l~~~~~~~~~~~L~~~~k---~~Gg~l~v~ir~r~p 139 (155)
T cd08690 105 EPLETKCEIHESVDLMDGRK---ATGGKLEVKVRLREP 139 (155)
T ss_pred ccccccCcceEEEEhhhCCC---CcCCEEEEEEEecCC
Confidence 99988777888999964332 458999999997554
No 54
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.59 E-value=1.2e-14 Score=133.48 Aligned_cols=97 Identities=22% Similarity=0.336 Sum_probs=85.0
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
+.|+|+|++||+|+.++ +.||||++.+++.+ .+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT 35 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT 35 (127)
T ss_pred ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence 68999999999997533 16899999998865 699
Q ss_pred eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCcee--EEEEEcc
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII 160 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~--~~w~~l~ 160 (696)
++.+++ ||.|||.|.|.+......|.|+|||++.++|++||++.|+|+++..++.. ..||+|.
T Consensus 36 ~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 36 IAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999885 99999999999988888899999999988899999999999999866554 6899994
No 55
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.59 E-value=1.5e-14 Score=134.58 Aligned_cols=114 Identities=25% Similarity=0.499 Sum_probs=94.7
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|+|+|++|++|+..+..+. +||||++.+++.. .+|+
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~~-~kT~ 38 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKTK-KRTK 38 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCEe-eecc
Confidence 68999999999998775543 8999999997654 6999
Q ss_pred eccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCC------------CCeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
+++++.||.|||+|.|.+..+...|.|+|||++.. .+++||.+.+++.++.. ....|++|. +...
T Consensus 39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~-~~~~ 115 (127)
T cd04027 39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE-KRTD 115 (127)
T ss_pred eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECc-cCCC
Confidence 99999999999999999977777899999999852 38999999999998753 356899994 4444
Q ss_pred CCCCCceEEEEE
Q 005439 166 PPKPGASIQLEL 177 (696)
Q Consensus 166 ~~~~~g~i~l~l 177 (696)
.....|+|.|++
T Consensus 116 ~~~~~G~i~~~~ 127 (127)
T cd04027 116 KSAVSGAIRLHI 127 (127)
T ss_pred CCcEeEEEEEEC
Confidence 446799998874
No 56
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=9.3e-15 Score=139.23 Aligned_cols=82 Identities=22% Similarity=0.409 Sum_probs=69.4
Q ss_pred CCcEEEEEECCe----eEEEeeeccCCCCCeeeeEEEEeecC----------------CCCeEEEEEEeCCCCC-CeeeE
Q 005439 80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG 138 (696)
Q Consensus 80 ~dpyv~v~~~~~----~~~~T~~~~~~~~P~wne~f~~~~~~----------------~~~~l~i~v~d~~~~~-~~~iG 138 (696)
+||||+|.+... ...+|++++++.||+|||+|.|.+.. ....|.|.||+++.++ +++||
T Consensus 19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG 98 (148)
T cd04010 19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG 98 (148)
T ss_pred CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence 899999999652 34699999999999999999999851 1245899999999886 89999
Q ss_pred EEecccccccCC-ceeEEEEEccC
Q 005439 139 TAAIPAHTIATG-ELISRWYDIIA 161 (696)
Q Consensus 139 ~~~i~l~~l~~g-~~~~~w~~l~~ 161 (696)
++.|++..+..+ .....||+|..
T Consensus 99 ~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 99 EVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEecccccccCCcCcceeecCC
Confidence 999999999876 56789999943
No 57
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.58 E-value=1.7e-14 Score=133.36 Aligned_cols=116 Identities=25% Similarity=0.376 Sum_probs=93.9
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEeee
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (696)
|+|+|++|++|+.++..+. +||||++.+++....+|++
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~v 39 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTDV 39 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEccE
Confidence 8999999999998765543 8999999997656689999
Q ss_pred ccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC---CeeeEEEecccccccCCc-eeEEEEEccCCCCC-CCCCCceE
Q 005439 99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGASI 173 (696)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l~~g~-~~~~w~~l~~~~~~-~~~~~g~i 173 (696)
++++.||.|||+|.|.+.. ...|.|+|||++.++ +++||.+.+++.++.... ....|++|...... .....|+|
T Consensus 40 ~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v 118 (123)
T cd08382 40 AKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKI 118 (123)
T ss_pred EcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEE
Confidence 9999999999999999976 678999999999886 479999999999986433 34679999443321 23347888
Q ss_pred EEEE
Q 005439 174 QLEL 177 (696)
Q Consensus 174 ~l~l 177 (696)
.+++
T Consensus 119 ~~~~ 122 (123)
T cd08382 119 VVSL 122 (123)
T ss_pred EEEe
Confidence 8776
No 58
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.58 E-value=8.4e-15 Score=136.36 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=86.5
Q ss_pred ccEEEEEEEEeeCCCCCCCc-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
.+.|.|+|++|++|+.++.. +. +||||++.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------------------~dpYVkv~llp~~~~ 51 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------------------CHPYVKVCLLPDKSH 51 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------------------CCeEEEEEEEeCCcc
Confidence 48899999999999987653 32 89999999842
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccC---CceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|.+... ...|.+.||+.+.++ +++||.+.|+|.++.. ++....||+|
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 2356999999999999999999998763 467999999999887 8999999999999864 4467789998
No 59
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=1e-14 Score=134.95 Aligned_cols=113 Identities=26% Similarity=0.437 Sum_probs=94.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
+|+|+|++|++|+..+..+. +||||++.+++....+|+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~ 38 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP 38 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence 48999999999997664443 899999999884557999
Q ss_pred ecc-CCCCCeeeeEEEEeecCC-----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCce-----eEEEEEccCCCCC
Q 005439 98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----ISRWYDIIAPSGS 165 (696)
Q Consensus 98 ~~~-~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~l~~~~~~ 165 (696)
+.. ++.||.|||.|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++..+.. ...||+|..+.+
T Consensus 39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g- 117 (125)
T cd04051 39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG- 117 (125)
T ss_pred cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-
Confidence 986 489999999999999887 578999999999866 8999999999999986554 368999976654
Q ss_pred CCCCCceEEE
Q 005439 166 PPKPGASIQL 175 (696)
Q Consensus 166 ~~~~~g~i~l 175 (696)
++.|.|++
T Consensus 118 --~~~G~~~~ 125 (125)
T cd04051 118 --KPQGVLNF 125 (125)
T ss_pred --CcCeEEeC
Confidence 56888764
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.8e-14 Score=132.67 Aligned_cols=104 Identities=27% Similarity=0.457 Sum_probs=92.3
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+..+..+. +||||++.+++..+.+|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT 38 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT 38 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence 789999999999998765443 89999999987777899
Q ss_pred eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCC
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS 163 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~ 163 (696)
++++++.||+|||.|.|.+..+...|.|+|||++.++ +++||.+.+++.++..+ ..+.||.+++..
T Consensus 39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999999888789999999999987 78999999999999866 668999997654
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.57 E-value=1e-14 Score=134.88 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=86.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|+||++++..+. +||||++.+-.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~------------------------------------------~dpyVKv~Llp~~~~ 49 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPEN------------------------------------------SKVYVRVALLPCSSS 49 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCC------------------------------------------CCeEEEEEEccCCCC
Confidence 35789999999999998764433 89999999832
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCC-ceeEEEEEc
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDI 159 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~l 159 (696)
....||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||.+.|+|.++... +....||+|
T Consensus 50 ~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 50 TSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 2367999999999999999999998763 467999999999887 89999999999999644 457789875
No 62
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=4.6e-14 Score=128.76 Aligned_cols=96 Identities=26% Similarity=0.479 Sum_probs=75.3
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR 155 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~ 155 (696)
+||||++.+++...++|+++++ .+|.|||+|.|.+... ...|.|.+|+.+... +..+|.+. +..+..+...+.
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~ 94 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDE 94 (117)
T ss_pred CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE--ecCcCCCCccee
Confidence 8999999999877789999999 9999999999999874 345788888887664 56666655 445555777899
Q ss_pred EEEccCCCCCCCCCCceEEEEEEE
Q 005439 156 WYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
||+|..... .....|+|+|+++|
T Consensus 95 w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 95 WFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred EEECccCCC-CCCcCceEEEEEEC
Confidence 999943322 33568999999986
No 63
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.56 E-value=2.1e-14 Score=133.14 Aligned_cols=101 Identities=27% Similarity=0.537 Sum_probs=87.7
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT 92 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~ 92 (696)
+.|.|+|++|++|+.++..+. +||||++.+.. ..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~ 53 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST 53 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence 889999999999998775443 89999999843 34
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCC--C-CeeeEEEecccccccCCceeEEEEEc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~--~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
+.+|++++++.||+|||+|.|.+... ...|.|.||+.+.+ + +++||.+.+++.++..++....||+|
T Consensus 54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 57999999999999999999998653 35789999999875 3 89999999999999888888999988
No 64
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.55 E-value=2.9e-14 Score=131.78 Aligned_cols=101 Identities=28% Similarity=0.441 Sum_probs=84.1
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.+.|.|+|++|++|+.++..+. +||||++.+.+ .
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 52 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEK 52 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCcc
Confidence 4889999999999998765443 89999999954 3
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.+.+|++++++.||+|||+|.|.+.. ....|.|+|||.+.++ +++||++.++|.+.. ......||+|
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 45799999999999999999999654 2467999999999887 899999999999833 2334689998
No 65
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.55 E-value=2.3e-14 Score=131.99 Aligned_cols=103 Identities=29% Similarity=0.521 Sum_probs=87.7
Q ss_pred EccEEEEEEEEeeCCCCCC-CcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 15 LHGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
-.+.|.|+|++|++|+.++ ..+. +||||++.+..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyv~v~l~~~~~ 49 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKR------------------------------------------SNPYVKVYLLPDKS 49 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCC------------------------------------------CCcEEEEEEecCCC
Confidence 4589999999999999766 2222 89999999832
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.+|++++++.+|+|||+|.|.+... ...|.|+|||.+.++ +++||.+.++|.++..+...+.||+|
T Consensus 50 ~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 50 KQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 2457999999999999999999998763 457999999999887 79999999999999888888999986
No 66
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.54 E-value=1.7e-14 Score=130.81 Aligned_cols=98 Identities=28% Similarity=0.474 Sum_probs=83.8
Q ss_pred cEEEEEEEEeeCCCCCCCc-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeE
Q 005439 17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~ 93 (696)
|.|+|+|++|++|+.++.. +. +||||++.+.. ...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~ 38 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL 38 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence 7899999999999987754 43 89999999843 345
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.+|++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||.+.+++.++.. ..+|+++
T Consensus 39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 7999999999999999999988764 457999999999987 8999999999999872 3478877
No 67
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.54 E-value=6.5e-14 Score=130.45 Aligned_cols=103 Identities=29% Similarity=0.404 Sum_probs=84.7
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~ 93 (696)
.+.|.|+|++|++|+.++..+. .+||||++.+.. ..+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyV~v~l~~~~~~~ 53 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSG-----------------------------------------TSDPYVKLQLLPEKEHK 53 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCC-----------------------------------------CcCCEEEEEEeCCcCce
Confidence 4689999999999998764311 289999999843 445
Q ss_pred EEeeeccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCC--ceeEEEEEc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI 159 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~l 159 (696)
.||++++++.||+|||+|.|. +.. ....|.++||+++.++ +++||.+.|+|.++..+ ++...|.+|
T Consensus 54 ~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 54 VKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred eeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 699999999999999999994 432 2346899999999887 89999999999999654 678899988
No 68
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=6.7e-14 Score=129.46 Aligned_cols=102 Identities=30% Similarity=0.473 Sum_probs=87.3
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeeE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV 93 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~~ 93 (696)
.+.|.|+|++|++|+.++..+. +||||++.+. ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 52 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK 52 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcc
Confidence 5689999999999997765443 8999999983 3445
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.+|++++++.||+|||+|.|..... ...|.++|||.+.++ +++||.+.+++.++..+.....|++|
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 7999999999999999999984332 346899999999887 89999999999999988889999998
No 69
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.53 E-value=1.3e-13 Score=134.84 Aligned_cols=145 Identities=22% Similarity=0.242 Sum_probs=108.3
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
.++++.+.++|.+|+++|+|+.|.|++.. .+ . ...|.+.|.+|+++||+|+||+.+.. ....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-----~--~~~l~~~L~~a~~rGv~V~il~~~~~-~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-----Y--GPVILDALLAAARRGVKVRILVDEWS-NTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-----c--chHHHHHHHHHHHCCCEEEEEEcccc-cCCc------
Confidence 57899999999999999999999887532 01 1 26899999999999999999984433 2110
Q ss_pred CcccCChHHHHhhhcCC---CcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCcc
Q 005439 321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~---gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R 397 (696)
.........|... ++++...+... ....++|+|++|||++ ++++||.|+....
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0112344455443 78776322110 0235889999999998 9999999999954
Q ss_pred CCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh--HHHHHHHHHHHHHHhh
Q 005439 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA 459 (696)
Q Consensus 398 ~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp--av~dl~~~F~qrWn~~ 459 (696)
+. .++|+.+.+.+| +|.++.+.|.+.|+..
T Consensus 138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 42 457999999999 7999999999999863
No 70
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.53 E-value=5.2e-14 Score=127.11 Aligned_cols=96 Identities=20% Similarity=0.356 Sum_probs=79.7
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+..+..+. ....+||||++.+++.. .||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~~-~kT 41 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRRV-FRT 41 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCEe-Eee
Confidence 789999999999997653221 01128999999997654 699
Q ss_pred eeccCCCCCeeeeEEEEeecCCC--CeEEEEEEeCCCCC-CeeeEEEecccccccCCc
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~ 151 (696)
++++++.||+|||.|.|.+.... ..|.|+|||++.++ +++||++.++|.++..+.
T Consensus 42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999999999999986543 46899999999987 899999999999987653
No 71
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.3e-14 Score=127.20 Aligned_cols=100 Identities=29% Similarity=0.487 Sum_probs=88.2
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEeee
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV 98 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~~ 98 (696)
|+|+|++|++|+..+..+. +||||++.+.+....+|++
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v 38 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT 38 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence 5799999999997664433 8999999998766689999
Q ss_pred ccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 99 ~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
+.++.+|.|||+|.|.+... ...+.|+|||++..+ +++||++.+++.++..+.....|++|.
T Consensus 39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 99999999999999998864 567899999999886 899999999999999888889999994
No 72
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=7.4e-14 Score=126.71 Aligned_cols=100 Identities=20% Similarity=0.377 Sum_probs=85.9
Q ss_pred ccCCCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccC-CceeE
Q 005439 77 IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELIS 154 (696)
Q Consensus 77 ~~~~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~-g~~~~ 154 (696)
.+.+||||++.++++...+|++++++.||+|||+|.|.+.++ ...|.|.|+|.+.+++++||.+.++|.++.. +....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~ 89 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQ 89 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccc
Confidence 345899999999887778999999999999999999999875 4669999999998888999999999998853 44567
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEecC
Q 005439 155 RWYDIIAPSGSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (696)
.||+|.. ...|+|+|++.|.|+
T Consensus 90 ~w~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 90 QWFPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred eeEECCC------CCCCEEEEEEEEecC
Confidence 9999942 257999999999984
No 73
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=8.2e-14 Score=129.04 Aligned_cols=101 Identities=22% Similarity=0.377 Sum_probs=86.4
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV 93 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~ 93 (696)
.+.|.|+|++|+||++++..+. +||||++.+.. ..+
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~ 52 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQR 52 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCcce
Confidence 3789999999999998764443 89999988732 445
Q ss_pred EEeeeccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.||++.++ .||+|||+|.|+ +.. ....|.++|++++.++ +++||.+.|+|..+..++....|++|
T Consensus 53 ~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 53 AKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred eecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 79999988 999999999998 554 2467999999999887 89999999999999988889999998
No 74
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=9e-14 Score=132.79 Aligned_cols=116 Identities=30% Similarity=0.405 Sum_probs=86.2
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEee
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR 97 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T~ 97 (696)
.|+|+|++|++||.+|..+. .+.+. ..+ +...+.+||||+|.+++.+ .+|+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~--~~~------------------------~~~~~~~DPYV~V~~~g~~-~kT~ 51 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK--AFL------------------------GEKKELVDPYVEVSFAGQK-VKTS 51 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee--ccc------------------------cCCCCCcCcEEEEEECCEe-eecc
Confidence 37899999999999874431 00000 000 0112248999999999876 5999
Q ss_pred eccCCCCCeeeeEEEEeecCC--CCeEEEEEEeCCCCC-CeeeEEEecccccccCCce-------eEEEEEccCC
Q 005439 98 VLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-------ISRWYDIIAP 162 (696)
Q Consensus 98 ~~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~-------~~~w~~l~~~ 162 (696)
+++++.||+|||+|.|++..+ ...|.|+|||++..+ +++||++.+++.++...+. -..|+.|+++
T Consensus 52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999999999999997543 467999999999985 8999999999998875432 1367777554
No 75
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.51 E-value=1.9e-14 Score=135.48 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=89.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|+||+.++.... .++||||+|.+..
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k 52 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAK 52 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCcc
Confidence 46899999999999998774211 1289999999843
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
..+.||++++++.||+|||+|.|.++.. ...|.|+|||.+.++ +++||.+.+++.. .|+..+.|.+++...++
T Consensus 53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~ 129 (138)
T cd08407 53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRR 129 (138)
T ss_pred cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCC
Confidence 2356999999999999999999998874 466999999999998 8999999999974 67777889988776554
No 76
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=8.7e-14 Score=128.60 Aligned_cols=100 Identities=26% Similarity=0.515 Sum_probs=88.1
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+..+..+. +||||++.+++.. .+|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T 37 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS 37 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence 789999999999997765443 8999999998765 588
Q ss_pred eeccC-CCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 97 ~~~~~-~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
++.++ +.||.|||+|.|.+..+ ...|.|+|||.+.++ +++||.+.+++.++..+...+.|+.|
T Consensus 38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 88875 89999999999999887 467999999999886 89999999999999877778999999
No 77
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-13 Score=153.04 Aligned_cols=131 Identities=27% Similarity=0.387 Sum_probs=109.2
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~ 91 (696)
+-+..|.|+|++|++|+.++..+ ++||||++++.. .
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g------------------------------------------~sdpyVK~~llPdk~ 201 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGG------------------------------------------TSDPYVKVYLLPDKK 201 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCC------------------------------------------CCCCeeEEEEcCCCC
Confidence 45678999999999999887322 289999999944 4
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~ 167 (696)
.+.+|++.+++.||+|||+|.|.+... ...|.++|||.|+|+ +++||.+.++|..+........|.++........
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~ 281 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSE 281 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcc
Confidence 568999999999999999999997764 467999999999998 9999999999998887766888999965433333
Q ss_pred CCCceEEEEEEEecCCCCC
Q 005439 168 KPGASIQLELKFTPCDKNP 186 (696)
Q Consensus 168 ~~~g~i~l~l~~~~~~~~p 186 (696)
+..|+|.++|+|.|++..-
T Consensus 282 ~~~gel~~sL~Y~p~~g~l 300 (421)
T KOG1028|consen 282 ELAGELLLSLCYLPTAGRL 300 (421)
T ss_pred cccceEEEEEEeecCCCeE
Confidence 4448999999999996543
No 78
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.51 E-value=1.2e-13 Score=127.25 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=87.6
Q ss_pred ccEEEEEEEEeeCCCCCC-CcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 005439 16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (696)
.+.|.|+|++|++|+.++ ..+. +||||++.+. ...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~ 50 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR 50 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence 578999999999999776 3332 8999999983 334
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+|++++++.||+|||+|.|.+... ...|.|+|||.+..+ +++||++.++|+++........|++|
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 57999999999999999999998763 356999999999887 89999999999999988888899998
No 79
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.50 E-value=1.6e-13 Score=124.45 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCC-----CeEEEEEEeCCCCC-CeeeEEEecccccccCC---
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--- 150 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~-----~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g--- 150 (696)
+||||++.+++++ .+|++++++.||.|||+|.|.+..+. ..|.|+|||.+.++ +++||++.++|+++..+
T Consensus 21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~ 99 (111)
T cd04011 21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99 (111)
T ss_pred CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence 8999999999876 59999999999999999999976543 56899999999887 89999999999999654
Q ss_pred ceeEEEEEccC
Q 005439 151 ELISRWYDIIA 161 (696)
Q Consensus 151 ~~~~~w~~l~~ 161 (696)
.....|++|.+
T Consensus 100 ~~~~~w~~L~~ 110 (111)
T cd04011 100 AFLRKWLLLTD 110 (111)
T ss_pred cceEEEEEeeC
Confidence 45789999954
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.50 E-value=3.7e-14 Score=132.74 Aligned_cols=107 Identities=29% Similarity=0.440 Sum_probs=89.3
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~ 48 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGK 48 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCc
Confidence 45899999999999998775543 89999999843
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
..+.+|++++++.||+|||+|.|.+..+ ...|.|+|||.+..+ +++||.+.+++.. .|+....|++++...++
T Consensus 49 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~ 125 (133)
T cd08384 49 KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDK 125 (133)
T ss_pred cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCC
Confidence 3357999999999999999999998764 357999999999886 8999999999975 56667889999766543
No 81
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.49 E-value=3.6e-14 Score=133.44 Aligned_cols=106 Identities=23% Similarity=0.365 Sum_probs=87.0
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.+.|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~ 51 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI 51 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence 5789999999999998765443 89999999832 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
.+.||++++++.||+|||+|.|.++.. ...|.|+|++++.++ +++||++.|+.. ..|+..++|.+++...++
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~ 127 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRK 127 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCC
Confidence 246899999999999999999998763 466999999999887 899999999776 456677789888766443
No 82
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.48 E-value=1.2e-13 Score=133.84 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=86.4
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----C
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~ 90 (696)
..|.|.|+|++|++|+..+..+. +||||++.+. +
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~ 62 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK 62 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 45899999999999998765443 8999999883 2
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++........|+++
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 3467999999999999999999986432 346899999999987 89999999999998765567788877
No 83
>PRK05443 polyphosphate kinase; Provisional
Probab=99.48 E-value=2.4e-12 Score=149.29 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=150.7
Q ss_pred ccchHHHHHHHHHhccc-----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCc
Q 005439 240 PGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314 (696)
Q Consensus 240 ~~~~f~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~ 314 (696)
|-+-|.-+.+.|++|.+ +|.++-|.+.. ..++.++|+.||++||+|+||+ +.-.
T Consensus 346 PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~ka---- 404 (691)
T PRK05443 346 PYESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKA---- 404 (691)
T ss_pred CccCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCc----
Confidence 34568889999999998 89999997641 2689999999999999999998 5331
Q ss_pred cCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccC
Q 005439 315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 394 (696)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~ 394 (696)
.+....+..+.+.|+++||++++ .++ .+..|.|+++||++.. +.-+.+|++|+.|+.
T Consensus 405 ------rfde~~n~~~~~~L~~aGv~V~y--~~~--------------~~k~HaK~~lid~~e~-~~~~~~~~iGTgN~n 461 (691)
T PRK05443 405 ------RFDEEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREG-GGLRRYVHLGTGNYN 461 (691)
T ss_pred ------cccHHHHHHHHHHHHHcCCEEEE--ccC--------------CccceeEEEEEEeecC-CceeEEEEEcCCCCC
Confidence 11222234677788999999974 222 1356999999998622 233448999999998
Q ss_pred CccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeE-eChHHHHHHHHHHHHHHhhcccchhhhhhcccc
Q 005439 395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRKATKLTELTFKFKRVS 473 (696)
Q Consensus 395 ~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v-~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~ 473 (696)
. +. ...|.|+.+.. .+..+.|+...|...|......
T Consensus 462 ~-~s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~----------- 498 (691)
T PRK05443 462 P-KT-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPV----------- 498 (691)
T ss_pred c-ch-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccc-----------
Confidence 7 32 12578999994 5569999999999987532110
Q ss_pred cccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccc
Q 005439 474 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 553 (696)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~ 553 (696)
.+ -.++-+ |.
T Consensus 499 -----------~~-------------------------------------~~l~~s---------P~------------- 508 (691)
T PRK05443 499 -----------KL-------------------------------------RKLLVS---------PF------------- 508 (691)
T ss_pred -----------cc-------------------------------------cEEeec---------Cc-------------
Confidence 00 011111 11
Q ss_pred cCccchhHHHHHHHHHHHhccc----eEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 005439 554 KDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (696)
Q Consensus 554 ~~~~~e~sI~~ayl~~I~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~Ivl 627 (696)
..+..+.+.+...|.+|++ +|+|.++| +++. .+..+|..| +.+||+|.|++
T Consensus 509 ---~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d~-----------------~ii~aL~~A--s~~GV~V~liV 563 (691)
T PRK05443 509 ---TLRERLLELIDREIANARAGKPARIIAKMNS-LVDP-----------------QIIDALYEA--SQAGVKIDLIV 563 (691)
T ss_pred ---cHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEE
Confidence 1247788999999999999 99999999 4452 788899888 55888888888
No 84
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=1.1e-13 Score=129.00 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=86.1
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---- 89 (696)
...|.|.|+|++|++|++++... ..||||+|++-
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~~~k 48 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFSTGG 48 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEECCC
Confidence 46788999999999999753222 17999999983
Q ss_pred CeeEEEeeeccCCC-CCeeeeEEEEeecCCCC--eEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 90 QATVARTRVLKNSQ-EPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 90 ~~~~~~T~~~~~~~-~P~wne~f~~~~~~~~~--~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
...+.||++++++. +|+|||+|.|+++.+.. .+.|+|+|.+..+ +++||.+.++.+.. .++..++|.+++...++
T Consensus 49 ~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~ 127 (135)
T cd08692 49 LLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEK 127 (135)
T ss_pred cceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCC
Confidence 23467999999985 69999999999987643 4678899998876 89999999999763 34557899988765543
No 85
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.47 E-value=8.9e-14 Score=130.81 Aligned_cols=106 Identities=27% Similarity=0.462 Sum_probs=87.8
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A- 91 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~- 91 (696)
..+.|.|+|++|++|+.++..+. +||||++.+.. .
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~ 50 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCce
Confidence 46789999999999998765543 89999999832 2
Q ss_pred -eEEEeeeccCCCCCeeeeEEEEeecC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 92 -TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 92 -~~~~T~~~~~~~~P~wne~f~~~~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
.+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||.+.+++.. .+.....|++|....+
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~ 126 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPR 126 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCC
Confidence 34689999999999999999999875 3456899999999987 8999999999987 4666778999865544
No 86
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.47 E-value=2.2e-13 Score=130.36 Aligned_cols=100 Identities=25% Similarity=0.445 Sum_probs=85.4
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe--
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA-- 91 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-- 91 (696)
...+.|.|+|++|++|+++|..+. +||||++.+...
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~ 62 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASR 62 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccc
Confidence 346789999999999998876654 899999998531
Q ss_pred --------------------------eEEEeeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEeccc
Q 005439 92 --------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPA 144 (696)
Q Consensus 92 --------------------------~~~~T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l 144 (696)
...+|++++++.||.|||+|.|.+... ...|.|+|||.+ +++||.+.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l 139 (153)
T cd08676 63 ERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPL 139 (153)
T ss_pred ccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEH
Confidence 246899999999999999999999764 467999999998 89999999999
Q ss_pred ccccCCceeEEEEEc
Q 005439 145 HTIATGELISRWYDI 159 (696)
Q Consensus 145 ~~l~~g~~~~~w~~l 159 (696)
.++. +..++.||+|
T Consensus 140 ~~l~-~~~~d~W~~L 153 (153)
T cd08676 140 KDLP-SCGLDSWFKL 153 (153)
T ss_pred HHhC-CCCCCCeEeC
Confidence 9998 4457999986
No 87
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.46 E-value=3.3e-13 Score=127.20 Aligned_cols=81 Identities=22% Similarity=0.444 Sum_probs=71.4
Q ss_pred CCcEEEEEECC---eeEEEeeeccCCCCCeeeeEEEEeecCC----------------CCeEEEEEEeCCCCC-CeeeEE
Q 005439 80 SDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGT 139 (696)
Q Consensus 80 ~dpyv~v~~~~---~~~~~T~~~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d~~~~~-~~~iG~ 139 (696)
+||||++.+.. ..+.+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.
T Consensus 19 ~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~ 98 (137)
T cd08675 19 CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGE 98 (137)
T ss_pred CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEE
Confidence 89999999973 4557999999999999999999998775 346899999999885 899999
Q ss_pred EecccccccCCceeEEEEEcc
Q 005439 140 AAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 140 ~~i~l~~l~~g~~~~~w~~l~ 160 (696)
+.+++.++........||+|.
T Consensus 99 ~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 99 VRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred EEEehhhccCCCcccceEecC
Confidence 999999998777789999994
No 88
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.46 E-value=4e-13 Score=127.66 Aligned_cols=91 Identities=31% Similarity=0.645 Sum_probs=81.8
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEEe
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART 96 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~T 96 (696)
|.|.|+|++|++|+..+. +. +||||++.++++. .+|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------------------sDPYV~v~~g~~~-~kT 37 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------------------SDPYVVLTLGNQK-VKT 37 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------------------cCcEEEEEECCEE-EEe
Confidence 789999999999997664 32 8999999998765 799
Q ss_pred eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCc
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE 151 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~ 151 (696)
++++++.||+|||+|.|.+..+...+.|+|||++.++ +++||.+.+++.++....
T Consensus 38 ~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 38 RVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred eeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 9999999999999999999998888999999999987 899999999999887543
No 89
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.46 E-value=4.3e-13 Score=125.21 Aligned_cols=108 Identities=26% Similarity=0.439 Sum_probs=91.2
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
+.+-.+.|.|+|++|++|+..+..+. +||||++.+.+
T Consensus 8 ~~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~ 45 (131)
T cd04026 8 ISVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPD 45 (131)
T ss_pred EEECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcC
Confidence 45677999999999999997654433 89999999953
Q ss_pred ---eeEEEeeeccCCCCCeeeeEEEEeecCC--CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 91 ---~~~~~T~~~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
..+++|++++++.+|.|||+|.|.+... ...|.|+|||++..+ +++||++.+++.++... ....||+|.+.
T Consensus 46 ~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 46 PKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 3568999999999999999999998764 356999999999876 89999999999999854 67899999654
No 90
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.45 E-value=1e-12 Score=121.81 Aligned_cols=97 Identities=26% Similarity=0.453 Sum_probs=78.4
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCC---ce--e
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG---EL--I 153 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g---~~--~ 153 (696)
+||||++.+++....+|++++++.+|+|||+|.|.+. ....|.|+|||++..+ +++||++.++|.++..+ .. .
T Consensus 22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 100 (125)
T cd04021 22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV 100 (125)
T ss_pred CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence 8999999998765689999999999999999999986 4568999999999986 89999999999988742 22 4
Q ss_pred EEEEEccCCCCCCCCCCceEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLEL 177 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l 177 (696)
..|+++..+........|+|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 101 KLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEccCCCcceeeeeEEEEe
Confidence 468998544321234588888875
No 91
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.45 E-value=8.7e-14 Score=130.83 Aligned_cols=107 Identities=29% Similarity=0.490 Sum_probs=88.2
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 50 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence 57899999999999998765443 89999999842
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
....+|++++++.||.|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++.. .|+..+.|++++....+
T Consensus 51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~ 127 (136)
T cd08402 51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRR 127 (136)
T ss_pred cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCC
Confidence 23568999999999999999999987542 46899999999987 8999999999975 46667889988765443
No 92
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.44 E-value=3e-12 Score=147.65 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=145.7
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCcc
Q 005439 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~ 315 (696)
-+-|..+.+.|++|.+ +|.|+-|.+.. ..++.++|++||++|++|+||| +--..
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkAr---- 396 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKAR---- 396 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhh----
Confidence 4557889999999998 89999997741 2689999999999999999998 61100
Q ss_pred CCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCC
Q 005439 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (696)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~ 395 (696)
+-...+-++.+.|+.+|++|++ ..+ .+..|+|+++||.+.++ .-+..+++|.-|...
T Consensus 397 ------fde~~ni~wa~~le~aG~~viy--g~~--------------~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 397 ------FDEEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGG-ELRRYVHLGTGNYHP 453 (672)
T ss_pred ------ccchhhHHHHHHHHHcCCEEEE--cCC--------------CeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCC
Confidence 0111234677789999999985 111 24779999999976211 122355665544433
Q ss_pred ccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeee-EeChHHHHHHHHHHHHHHhhcccchhhhhhccccc
Q 005439 396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (696)
Q Consensus 396 ~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~-v~Gpav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~ 474 (696)
. + ...|+|+++. ..+..+.|+...|..-|.......
T Consensus 454 ~-------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~----------- 490 (672)
T TIGR03705 454 K-------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK----------- 490 (672)
T ss_pred c-------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-----------
Confidence 1 1 2469999999 889999999999998875321100
Q ss_pred ccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhcccccccc
Q 005439 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (696)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~ 554 (696)
+. .++ + + |.
T Consensus 491 -----------~~-------------------------------------~l~-~---~-----P~-------------- 499 (672)
T TIGR03705 491 -----------FK-------------------------------------HLL-V---S-----PF-------------- 499 (672)
T ss_pred -----------hH-------------------------------------HHH-h---C-----cc--------------
Confidence 00 000 0 0 11
Q ss_pred CccchhHHHHHHHHHHHhccc----eEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEe
Q 005439 555 DVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 627 (696)
Q Consensus 555 ~~~~e~sI~~ayl~~I~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~Ivl 627 (696)
..+..+.+.+...|.+|++ +|+|.++| +++. .|..+|..| +.+||+|.+++
T Consensus 500 --~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D~-----------------~ii~aL~~A--s~aGV~V~Liv 554 (672)
T TIGR03705 500 --TLRKRLLELIDREIENARAGKPARIIAKMNS-LVDP-----------------DLIDALYEA--SQAGVKIDLIV 554 (672)
T ss_pred --hHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEE
Confidence 1246788899999999999 99999999 4452 788899888 55788888888
No 93
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.44 E-value=1.6e-13 Score=129.03 Aligned_cols=107 Identities=28% Similarity=0.450 Sum_probs=87.5
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q-- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~-- 90 (696)
..++|.|+|++|++|+.++..+. +||||++.+. +
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~ 50 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKR 50 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCc
Confidence 45899999999999997665443 8999999983 2
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
..+.+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++.+. |...+.|++++..+++
T Consensus 51 ~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~ 127 (136)
T cd08405 51 VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQ 127 (136)
T ss_pred cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCC
Confidence 2346899999999999999999997642 356899999999887 89999999999875 5566788888766544
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.43 E-value=1.7e-12 Score=120.23 Aligned_cols=116 Identities=29% Similarity=0.525 Sum_probs=93.0
Q ss_pred EEEEEEEEeeCCCCCC--CcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 005439 18 DLDLKIIRARRLPNMD--MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (696)
.|+|+|++|++|+.++ ..+ ..||||++.+..
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~~ 40 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGS------------------------------------------IVDPYVEVEIHGLPADD 40 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCC------------------------------------------ccCCEEEEEEEeCCCCC
Confidence 5899999999999765 122 289999999942
Q ss_pred eeEEEeeeccCCC-CCeeeeEEEEeecCCC-CeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 005439 91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (696)
Q Consensus 91 ~~~~~T~~~~~~~-~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (696)
....+|+++.++. ||+|||+|.|.+..+. ..|.|+|+|.+..++++||.+.+++.++..|. +|++|....+. ..
T Consensus 41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~-~~ 116 (128)
T cd00275 41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGE-PL 116 (128)
T ss_pred CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCC-CC
Confidence 3447999988765 9999999999988665 45899999998878899999999999997663 68999666554 24
Q ss_pred CCceEEEEEEE
Q 005439 169 PGASIQLELKF 179 (696)
Q Consensus 169 ~~g~i~l~l~~ 179 (696)
..|.|.+.+.+
T Consensus 117 ~~~~l~v~~~~ 127 (128)
T cd00275 117 ELSTLFVHIDI 127 (128)
T ss_pred cceeEEEEEEE
Confidence 56888888875
No 95
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.43 E-value=5.7e-13 Score=123.63 Aligned_cols=91 Identities=26% Similarity=0.383 Sum_probs=76.8
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
--|+|+|+|++|++|+. +..+. +||||+|.+++. +.
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~ 61 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EK 61 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-cc
Confidence 34799999999999973 33332 899999999876 57
Q ss_pred EeeeccCCCCCeeeeEEEEeecC--CCCeEEEEEEeCCCCC-CeeeEEEecccccccC
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~ 149 (696)
||++++++.||+|||+|.|.... ....|+|+|||++.++ +++||++.++|.....
T Consensus 62 kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 62 RTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred cCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 99999999999999999997533 3567999999999986 8999999999986653
No 96
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.43 E-value=1.7e-13 Score=129.17 Aligned_cols=106 Identities=21% Similarity=0.432 Sum_probs=88.4
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.+.|.|+|++|++|+..+ .+. +||||++.+.. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~ 50 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVV 50 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEe
Confidence 588999999999999766 332 89999999843 1
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
.+.+|++++++.||+|||+|.|.++.. ...|.|+||+.+..+ +++||++.|+......|+..+.|.+++...+
T Consensus 51 ~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~ 127 (137)
T cd08409 51 KTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK 127 (137)
T ss_pred eeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence 346999999999999999999998753 356999999999876 8999999999877777888888998876543
No 97
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.43 E-value=2e-13 Score=128.02 Aligned_cols=108 Identities=32% Similarity=0.470 Sum_probs=88.3
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
...|.|+|+|++|++|++++..+. +||||++.+..
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~ 48 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGR 48 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCc
Confidence 456899999999999998776554 89999999832
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
....+|++++++.||.|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|++. ..+...+.|++++...++
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~ 126 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRK 126 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCC
Confidence 23569999999999999999999986532 35899999999988 899999999987 445556789988766554
No 98
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=1.8e-13 Score=127.79 Aligned_cols=106 Identities=31% Similarity=0.520 Sum_probs=89.4
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.++|.|+|++|++|+..+..+. +||||++.+.. .
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~ 50 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKL 50 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEe
Confidence 4899999999999997664433 89999999854 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
...+|++++++.+|.|||+|.|.+... ...|.|+|||.+.++ +++||.+.+++++ .+...+.|++|+...++
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK 126 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence 356999999999999999999998775 367999999999876 8999999999998 67778899999766443
No 99
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.42 E-value=2.8e-12 Score=120.69 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=77.0
Q ss_pred CCcEEEEEECC--e----------eEEEeeeccCCCCCee-eeEEEEeecCCCCeEEEEEEeCCCCC----CeeeEEEec
Q 005439 80 SDPYVTVVVPQ--A----------TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAI 142 (696)
Q Consensus 80 ~dpyv~v~~~~--~----------~~~~T~~~~~~~~P~w-ne~f~~~~~~~~~~l~i~v~d~~~~~----~~~iG~~~i 142 (696)
+||||++.+.. . .+.+|++++++.||+| ||+|.|.+.. ...|.|+|||.+..+ +++||.+.+
T Consensus 21 ~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i 99 (137)
T cd08691 21 PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSI 99 (137)
T ss_pred CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEE
Confidence 99999999943 1 2579999999999999 9999999864 457999999976432 699999999
Q ss_pred ccccccCC---ceeEEEEEccCCCCCCCCCCceEEEEE
Q 005439 143 PAHTIATG---ELISRWYDIIAPSGSPPKPGASIQLEL 177 (696)
Q Consensus 143 ~l~~l~~g---~~~~~w~~l~~~~~~~~~~~g~i~l~l 177 (696)
++.++..+ .....|+++ ...+......|+|.|.+
T Consensus 100 ~l~~l~~~~~~~~~~~~~~l-~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 100 PVQRLLERHAIGDQELSYTL-GRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EHHHhcccccCCceEEEEEC-CcCCCCCcEEEEEEEEe
Confidence 99999754 346789999 44444556789988875
No 100
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.40 E-value=1.1e-12 Score=123.00 Aligned_cols=92 Identities=29% Similarity=0.452 Sum_probs=79.2
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (696)
.+.|.|+|++|++|+.++..+. +||||+|.+..
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~ 52 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFP 52 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCc
Confidence 3789999999999998765443 89999999852
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCC-----CCeEEEEEEeCCCCC-CeeeEEEecccccccC
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT 149 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~-----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~ 149 (696)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.++|.++..
T Consensus 53 ~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 53 DVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 3467999999999999999999998763 356899999999988 8999999999998874
No 101
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.40 E-value=7e-13 Score=150.55 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=109.8
Q ss_pred CCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCcc
Q 005439 233 DGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 312 (696)
Q Consensus 233 ~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~ 312 (696)
.+|++...+..+..+.++|.+||++|+|++..|-| + ..+.++|+.||+|||+|+||+ +..+..
T Consensus 335 ~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p--------d--------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~ 397 (509)
T PRK12452 335 ASGPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP--------D--------QETLTLLRLSAISGIDVRILY-PGKSDS 397 (509)
T ss_pred eCCCCchhHHHHHHHHHHHHHhhhEEEEECCccCC--------C--------HHHHHHHHHHHHcCCEEEEEc-CCCCCh
Confidence 33444444688999999999999999999744422 1 579999999999999999997 654221
Q ss_pred CccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccc
Q 005439 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID 392 (696)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~d 392 (696)
. .+....+.....|.++||++.. +.. ...|+|++|||++ +|++||.|
T Consensus 398 ~--------~~~~a~~~~~~~L~~aGv~I~~---y~~--------------~~lHaK~~ivD~~--------~a~vGS~N 444 (509)
T PRK12452 398 I--------ISDQASQSYFTPLLKAGASIYS---YKD--------------GFMHAKIVLVDDK--------IATIGTAN 444 (509)
T ss_pred H--------HHHHHHHHHHHHHHHcCCEEEE---ecC--------------CCeeeeEEEECCC--------EEEEeCcc
Confidence 1 0111123445667789999873 221 1359999999998 99999999
Q ss_pred cCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 005439 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (696)
Q Consensus 393 l~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~ 461 (696)
+.. |.- +..|.+..+...|+.|.++...|.++|..+..
T Consensus 445 ld~-RS~------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~ 482 (509)
T PRK12452 445 MDV-RSF------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHSTE 482 (509)
T ss_pred cCH-hHh------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 977 432 12466889999999999999999999987543
No 102
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.40 E-value=2.2e-12 Score=141.22 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=99.8
Q ss_pred hHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHh-hcCCEEEEEEeCCCCccCccCCCCCC
Q 005439 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTPG 321 (696)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA-~rGV~VriLvwD~~gs~~~~~~~~~~ 321 (696)
..+++.++|.+||++|+|+.+.|-|.. +++. . ......|.++|.+|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~-~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDD-K--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCC-C--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc-------
Confidence 468999999999999999999776632 2121 0 001258999999985 8999999996 87643210
Q ss_pred cccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCC
Q 005439 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 401 (696)
Q Consensus 322 ~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~ 401 (696)
......+.|..+|+++....+ + ..+.+|+|++|||++ +||+||+|+....+..
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDDE--------FAHITSANFDGTHYLH- 335 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcCC--------EEEEeccccCchhhcc-
Confidence 023455667777754210000 0 011279999999998 9999999997743432
Q ss_pred CCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhh
Q 005439 402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459 (696)
Q Consensus 402 ~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~ 459 (696)
..|.++ ....|++|.+++..|.++|+..
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 123333 2568999999999999999753
No 103
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.40 E-value=2.1e-12 Score=121.83 Aligned_cols=107 Identities=20% Similarity=0.380 Sum_probs=85.4
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---e
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A 91 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~ 91 (696)
..++|.|+|++|+||+.++..+. +||||++.+.. .
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~ 50 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQ 50 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCc
Confidence 35899999999999998765443 89999999832 1
Q ss_pred --eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 92 --TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 92 --~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
.+.||++++++.||+|||+|.|+++.. ...|.|+||+.+.++ +++||++.+++..... +..+.|+.++.+.+
T Consensus 51 ~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~ 128 (138)
T cd08408 51 EISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKG 128 (138)
T ss_pred ceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCC
Confidence 346999999999999999999998763 457999999999877 8999999998874331 23467888865544
No 104
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.39 E-value=5.6e-13 Score=125.32 Aligned_cols=108 Identities=23% Similarity=0.425 Sum_probs=85.1
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE-CC---
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV-PQ--- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~-~~--- 90 (696)
..|.|.|+|++|++|+.++..+. +||||++.+ ++
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~ 49 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKL 49 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 55899999999999998775554 899999997 32
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
....+|++++++.||+|||+|.|.+... ...|.|+|||++..+ +++||.+.|...... ++..+.|+.|+...++
T Consensus 50 ~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~ 127 (135)
T cd08410 50 IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRT 127 (135)
T ss_pred cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCC
Confidence 2346999999999999999999998653 236899999999877 899999987653322 2246789988766554
No 105
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.37 E-value=2.4e-13 Score=143.26 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=93.3
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP---- 89 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---- 89 (696)
+-...|+|+|.+|+||-+||.++. +||||++.+-
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPK 214 (683)
T ss_pred ecCceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCc
Confidence 456779999999999999998886 9999999983
Q ss_pred CeeEEEeeeccCCCCCeeeeEEEEeecCCC--CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 90 ~~~~~~T~~~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
+..++||++++.++||+|||+|+|.+.+.. ..|.|+|||+|+.+ ++++|+.++.+++|.. ..+++||.|+..
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsq 289 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQ 289 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhh
Confidence 356689999999999999999999998764 56899999999998 9999999999999984 468899999754
No 106
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=7.8e-13 Score=165.00 Aligned_cols=122 Identities=22% Similarity=0.460 Sum_probs=104.2
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
+..+.|.|.|+|++|++|. +..+. +||||++.++++
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~------------------------------------------sdPyv~l~~g~~ 2010 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGN------------------------------------------TNAFCKLTLGNG 2010 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCC------------------------------------------CCCeEEEEECCC
Confidence 4578999999999999997 22222 899999999976
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC--CeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~ 169 (696)
.+.||++++++.||+|||.|+|.+..|. ..|.|+|||+|.|+++.+|.+.|++.++..+....+||+|. +.+ +.
T Consensus 2011 ~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~---~k 2086 (2102)
T PLN03200 2011 PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLN-PES---NK 2086 (2102)
T ss_pred CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecC-ccc---cc
Confidence 5569999999999999999998887765 67999999999999889999999999999999999999995 322 23
Q ss_pred Cce---EEEEEEEec
Q 005439 170 GAS---IQLELKFTP 181 (696)
Q Consensus 170 ~g~---i~l~l~~~~ 181 (696)
.|+ |++++.|.+
T Consensus 2087 ~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2087 DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCcceEEEEEEecC
Confidence 566 999998875
No 107
>PRK13912 nuclease NucT; Provisional
Probab=99.37 E-value=1.3e-11 Score=121.50 Aligned_cols=141 Identities=17% Similarity=0.250 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
.+.++.+.++|++|+++|+|+.|.+.. ..+.++|.+|++|||+|+||+ |+.++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 356889999999999999999887731 479999999999999999996 88754221
Q ss_pred CcccCChHHHHhhh-cCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCC
Q 005439 321 GVMATHDEETKKFF-KHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (696)
Q Consensus 321 ~~~~~~~~~~~~~l-~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~D 399 (696)
......++ +.+++++... .+.... .......+|.|++|||++ ++|+||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~--~~~~~~------~~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLL--KGLKAK------NGKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEe--cCcccc------CcccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 01112222 2346665521 111000 001124689999999998 999999999985443
Q ss_pred CCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhh
Q 005439 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (696)
Q Consensus 400 t~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~~ 459 (696)
.. +++.+.+..| .+.++.+.|.+.|..+
T Consensus 146 ~N--------------------------------~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 NN--------------------------------YEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred cC--------------------------------CceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 20 2567778887 5689999999999764
No 108
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.36 E-value=9.3e-12 Score=113.04 Aligned_cols=65 Identities=34% Similarity=0.538 Sum_probs=55.7
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeC-------CCCC-CeeeEEEecccc
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAH 145 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~-------~~~~-~~~iG~~~i~l~ 145 (696)
+||||++.++. ..++||+++++|.||+|||+|.|.+.. ...|.+.|||+ |..+ |+++|++.+.|+
T Consensus 15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 89999999854 346899999999999999999999974 66899999997 3445 899988888775
No 109
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.36 E-value=3.8e-12 Score=117.85 Aligned_cols=118 Identities=24% Similarity=0.346 Sum_probs=89.1
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-EEEe
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~T 96 (696)
.|+|+|++|++|+.++..+. +||||++.+++.. ..+|
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT 38 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRD 38 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeecccee
Confidence 37899999999998775554 8999999998754 3588
Q ss_pred eeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEE
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ 174 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~ 174 (696)
++++++.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.+++.+...+ ..|.....+... ...|.++
T Consensus 39 ~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~~---~~~~~~~~~~~~--~~~~~~~ 113 (124)
T cd04037 39 NYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFFS---KHRATCGLPPTY--EESGPNQ 113 (124)
T ss_pred eEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccccc---hHHHhccCCCcc--cccCcee
Confidence 8899999999999999998655 457999999999986 89999999999866532 234433222222 1356666
Q ss_pred EEEEEecC
Q 005439 175 LELKFTPC 182 (696)
Q Consensus 175 l~l~~~~~ 182 (696)
.+..+.|.
T Consensus 114 ~~~~~~~~ 121 (124)
T cd04037 114 WRDSLKPS 121 (124)
T ss_pred cCcccCcc
Confidence 66665554
No 110
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.35 E-value=6.7e-12 Score=115.84 Aligned_cols=101 Identities=29% Similarity=0.405 Sum_probs=82.3
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.+.|.|+|++|++|++.+..+. +||||++.+.. .
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~ 51 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKA 51 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCC
Confidence 4689999999999997665443 89999999832 3
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEE
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD 158 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~ 158 (696)
.+.+|++++++.||.|||+|.|..... ...+.|+|||.+.+++++||.+.++++++..++..+.|+.
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 457999999999999999999963332 3578999999988788999999999999987766555543
No 111
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.35 E-value=4.1e-12 Score=116.82 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.7
Q ss_pred CCcEEEEEECCe------eEEEeeeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCC----CC-CeeeEEEecccccc
Q 005439 80 SDPYVTVVVPQA------TVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI 147 (696)
Q Consensus 80 ~dpyv~v~~~~~------~~~~T~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~----~~-~~~iG~~~i~l~~l 147 (696)
+||||++.+.+. .+.+|++++++.||+|||+|.|.+.. ....|.|+|||++. ++ +++||.+.+++.++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence 899999999653 25799999999999999999998653 45578999999996 55 89999999999999
Q ss_pred cCCceeEEEEEc
Q 005439 148 ATGELISRWYDI 159 (696)
Q Consensus 148 ~~g~~~~~w~~l 159 (696)
..++....|++|
T Consensus 101 ~~~~~~~~~~~l 112 (120)
T cd04048 101 VSSPGQKLTLPL 112 (120)
T ss_pred hcCCCcEEEEEc
Confidence 988778889999
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.31 E-value=3.2e-12 Score=142.07 Aligned_cols=133 Identities=25% Similarity=0.352 Sum_probs=116.5
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
....|.|+|.+|+|||+.+..+. .||||+|.++++.+.
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~------------------------------------------~D~yC~v~lD~E~v~ 40 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGM------------------------------------------RDCYCTVNLDQEEVC 40 (800)
T ss_pred cccceeEEEeecccCCCCCCCCC------------------------------------------cCcceEEeecchhhh
Confidence 34679999999999998876665 899999999999999
Q ss_pred EeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceE
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i 173 (696)
||.++.++..|.|.|.|.|.++.....|.|-|||.| ++ |+.||++.|.=.+|......+.|+.| .+.....+.+|++
T Consensus 41 RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L-~~VD~dsEVQG~v 118 (800)
T KOG2059|consen 41 RTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSL-QPVDPDSEVQGKV 118 (800)
T ss_pred hhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceec-cccCCChhhceeE
Confidence 999999999999999999999999999999999999 55 99999999999888876678899999 5655566789999
Q ss_pred EEEEEEecCCCCCccccc
Q 005439 174 QLELKFTPCDKNPLYRQG 191 (696)
Q Consensus 174 ~l~l~~~~~~~~p~~~~g 191 (696)
+|+|.+.+.........+
T Consensus 119 ~l~l~~~e~~~~~~~~c~ 136 (800)
T KOG2059|consen 119 HLELALTEAIQSSGLVCH 136 (800)
T ss_pred EEEEEeccccCCCcchhh
Confidence 999999998765443333
No 113
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.13 E-value=2.1e-10 Score=103.61 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=59.4
Q ss_pred CCcEEEEEECCe-----eEEEeeeccCCCCCeeeeEEEEeecC-----CCCeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~~~-----~~~~T~~~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
+||||++.+.+. ...+|++++++.||+|| +|.|++.. ....|.|+|||++.++ +++||.+.+++.++.
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 899999998542 45899999999999999 78887542 2567999999999987 899999999999998
Q ss_pred CC
Q 005439 149 TG 150 (696)
Q Consensus 149 ~g 150 (696)
.+
T Consensus 100 ~~ 101 (110)
T cd04047 100 KS 101 (110)
T ss_pred cC
Confidence 44
No 114
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.13 E-value=2.4e-10 Score=129.56 Aligned_cols=148 Identities=19% Similarity=0.179 Sum_probs=105.1
Q ss_pred cCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCc
Q 005439 232 LDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311 (696)
Q Consensus 232 l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs 311 (696)
+.+|++...+.+...+.++|.+|+++|+|+.-. ++ ++ ..+.++|+.||+|||+|+||+ +....
T Consensus 308 ~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tpY------fi--p~--------~~i~~aL~~Aa~rGV~Vril~-p~~~d 370 (483)
T PRK01642 308 IASGPGDPEETIHQFLLTAIYSARERLWITTPY------FV--PD--------EDLLAALKTAALRGVDVRIII-PSKND 370 (483)
T ss_pred EeCCCCChhhHHHHHHHHHHHHhccEEEEEcCC------cC--CC--------HHHHHHHHHHHHcCCEEEEEe-CCCCC
Confidence 344555544567888999999999999998522 22 21 589999999999999999997 55422
Q ss_pred cCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEccc
Q 005439 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGI 391 (696)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~ 391 (696)
.. ......+...+.|.++||++.. +... ..|.|++|||++ +|++|+.
T Consensus 371 ~~--------~~~~~~~~~~~~L~~~Gv~I~~---y~~~--------------~~HaK~~ivD~~--------~~~vGS~ 417 (483)
T PRK01642 371 SL--------LVFWASRAFFTELLEAGVKIYR---YEGG--------------LLHTKSVLVDDE--------LALVGTV 417 (483)
T ss_pred cH--------HHHHHHHHHHHHHHHcCCEEEE---eCCC--------------ceEeEEEEECCC--------EEEeeCC
Confidence 11 1111123445566788999873 2111 249999999998 9999999
Q ss_pred ccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcc
Q 005439 392 DLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK 461 (696)
Q Consensus 392 dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~~~~ 461 (696)
|+...-+.. =+++.+.+.+| .+.++.+.|.++|..+..
T Consensus 418 N~d~rS~~~--------------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~ 456 (483)
T PRK01642 418 NLDMRSFWL--------------------------------NFEITLVIDDTGFAADLAAMQEDYFARSRE 456 (483)
T ss_pred cCCHhHHhh--------------------------------hhcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence 996632210 03788889997 689999999999986543
No 115
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.13 E-value=1.6e-10 Score=98.05 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe--eEEEe
Q 005439 19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART 96 (696)
Q Consensus 19 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--~~~~T 96 (696)
|+|+|++|++|+..+..+. .||||++.+... ...+|
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T 38 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT 38 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence 7899999999997664443 899999999763 34899
Q ss_pred eeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEe
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA 141 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~ 141 (696)
++++++.+|.|||+|.|.+..+ ...|.|+||+.+..+ +++||++.
T Consensus 39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9999999999999999996554 456999999999998 89999874
No 116
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.8e-10 Score=126.09 Aligned_cols=123 Identities=25% Similarity=0.478 Sum_probs=101.5
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeE
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (696)
-+...++++|+.|.+|.+.|..++ +||||++.++..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk- 328 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK- 328 (1283)
T ss_pred ccceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-
Confidence 367789999999999998776665 9999999998866
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCC------------CCeeeEEEecccccccCCceeEEEEEccC
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIA 161 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (696)
.+|+++....||+|||.|.|.+.+....|+++|||+|.. +|+|+|+..|.+..+. | +++-||.| +
T Consensus 329 rrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynl-e 405 (1283)
T KOG1011|consen 329 RRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNL-E 405 (1283)
T ss_pred hhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcch-h
Confidence 599999999999999999999999988999999998732 4899999999988776 3 57899999 4
Q ss_pred CCCCCCCCCceEEEEEEEecC
Q 005439 162 PSGSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 162 ~~~~~~~~~g~i~l~l~~~~~ 182 (696)
.+..+....|-|+|.+...-.
T Consensus 406 krtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 406 KRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred hccchhhccceEEEEEEEEEc
Confidence 444444567887777765443
No 117
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.07 E-value=6.9e-10 Score=102.25 Aligned_cols=125 Identities=20% Similarity=0.350 Sum_probs=84.4
Q ss_pred HHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCC
Q 005439 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATH 326 (696)
Q Consensus 247 l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~ 326 (696)
|.++|++|+++|+|+.+.|. + ..+.++|..++++||+|+|++ +...... ... ....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~--------~---------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~--~~~----~~~~ 56 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT--------D---------PDIIKALLDAAKRGVKVRIIV-DSNQDDS--EAI----NLAS 56 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS---------S---------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH--CCC----SHHH
T ss_pred CHHHHhccCCEEEEEEEecC--------c---------HHHHHHHHHHHHCCCeEEEEE-CCCcccc--chh----hhHH
Confidence 57899999999999977552 1 478999999999999999997 5431100 000 0001
Q ss_pred hHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcc
Q 005439 327 DEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLF 406 (696)
Q Consensus 327 ~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~ 406 (696)
.....+.+...|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 57 ~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------- 100 (126)
T PF13091_consen 57 LKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------- 100 (126)
T ss_dssp HHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC-------
T ss_pred HHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc-------
Confidence 1233444467777754 1459999999998 999999999986552
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChH-HHHHHHHHHHHH
Q 005439 407 RDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW 456 (696)
Q Consensus 407 d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpa-v~dl~~~F~qrW 456 (696)
-.++..+.+.+|. +.++.+.|.+.|
T Consensus 101 -------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 -------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2359999999996 999999998889
No 118
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=8.7e-10 Score=95.24 Aligned_cols=80 Identities=34% Similarity=0.646 Sum_probs=70.5
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCCCC-CeeeEEEeccccccc-CCceeEEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW 156 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~-~g~~~~~w 156 (696)
.+|||++.+......+|++..++.+|.|||.|.|.+.. ....+.|+|++.+..+ +.+||.+.+++..+. .+.....|
T Consensus 20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~ 99 (102)
T cd00030 20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99 (102)
T ss_pred CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence 89999999987555799999999999999999999988 5678999999998887 899999999999988 66667778
Q ss_pred EEc
Q 005439 157 YDI 159 (696)
Q Consensus 157 ~~l 159 (696)
++|
T Consensus 100 ~~l 102 (102)
T cd00030 100 LPL 102 (102)
T ss_pred ecC
Confidence 764
No 119
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.2e-09 Score=94.93 Aligned_cols=73 Identities=42% Similarity=0.754 Sum_probs=65.1
Q ss_pred CCcEEEEEECCe--eEEEeeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCC-CeeeEEEecccccccCCce
Q 005439 80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (696)
Q Consensus 80 ~dpyv~v~~~~~--~~~~T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~ 152 (696)
.+|||++.+... ...+|+++.++.+|.|||.|.|.+..+ ...|.|+||+.+..+ +.++|.+.+++.++..+..
T Consensus 21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 799999999775 568999999999999999999999988 788999999998876 8999999999998876644
No 120
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.02 E-value=1.4e-09 Score=120.53 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHhccceEEEEE-EEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT 319 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~-w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~ 319 (696)
..+...+.++|.+|+++|+|+. |.+ +. ..|.++|+.||+|||+|+||+ +..+...
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~---------p~--------~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~------ 260 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFF---------PG--------YRLLRALRNAARRGVRVRLIL-QGEPDMP------ 260 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcC---------CC--------HHHHHHHHHHHHCCCEEEEEe-CCCCCcH------
Confidence 4667889999999999999985 322 21 689999999999999999998 6543211
Q ss_pred CCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCC
Q 005439 320 PGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD 399 (696)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~D 399 (696)
++....+.....|.++||++.. +.. ...|.|++|||++ ++++|+.|+.. |..
T Consensus 261 --~~~~a~~~~~~~Ll~~Gv~I~~---y~~--------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~ 312 (411)
T PRK11263 261 --IVRVGARLLYNYLLKGGVQIYE---YCR--------------RPLHGKVALMDDH--------WATVGSSNLDP-LSL 312 (411)
T ss_pred --HHHHHHHHHHHHHHHCCCEEEE---ecC--------------CCceeEEEEECCC--------EEEEeCCcCCH-HHh
Confidence 1111123455667789999862 211 1359999999998 99999999977 432
Q ss_pred CCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHH
Q 005439 400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWR 457 (696)
Q Consensus 400 t~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn 457 (696)
.. + .++.+.|.+| .++.|...|.+.+.
T Consensus 313 ~l--------------N-----------------~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 313 SL--------------N-----------------LEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred hh--------------h-----------------hhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 21 1 2667778887 56888899999996
No 121
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=4.5e-09 Score=117.25 Aligned_cols=96 Identities=23% Similarity=0.430 Sum_probs=79.4
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCCCe-EEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~-l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
.||||+|.+.+ ....+|++..|+.||+|||+|.|++..|... |.|+|+|.|... ++++|++.+|+..+..|-
T Consensus 435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-- 512 (537)
T PLN02223 435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI-- 512 (537)
T ss_pred CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence 89999999954 3446888888899999999999999887654 799999999876 899999999999999985
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
++++|++..+.+.. ..+|.+++.|
T Consensus 513 -R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 513 -RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred -eeEeccCCCcCCCC-CceEEEEEEe
Confidence 67899777776543 4677776665
No 122
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=117.40 Aligned_cols=170 Identities=24% Similarity=0.433 Sum_probs=122.7
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
+.|.|-|+|..||+||-||..+. ..|.||++.+.+.. +
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~ 38 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F 38 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence 46899999999999999987665 28999999999877 7
Q ss_pred EeeeccCCCCCeee-eEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccC----------CceeEEEEEc
Q 005439 95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT----------GELISRWYDI 159 (696)
Q Consensus 95 ~T~~~~~~~~P~wn-e~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~----------g~~~~~w~~l 159 (696)
||.|..++.||.|| +-|.|.+.+. .+.|.|++.|+|..+ ++.||++.|.++.+.. |..+.+|+++
T Consensus 39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 99999999999999 6689998874 467999999999998 8999999999887642 4568899999
Q ss_pred cCCCCCCCCCCceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEEcccccCCCCCceecCCCCCCC
Q 005439 160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239 (696)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~ 239 (696)
++.-. ..+|+|.+-++..-......|..+.-+ -.| .-.+..|. +-+.++ .-||..+.++.+.++|.
T Consensus 119 fdtih---girgeinvivkvdlfndlnkf~qsscg-vkf--fcttsip~--~yra~i------ihgfveelvvnddpeyq 184 (1169)
T KOG1031|consen 119 FDTIH---GIRGEINVIVKVDLFNDLNKFPQSSCG-VKF--FCTTSIPF--CYRAQI------IHGFVEELVVNDDPEYQ 184 (1169)
T ss_pred ceecc---cccceeEEEEEEeehhhhhhccccccc-cee--eecccCcc--ceeehh------hhhhhHHhccCCCcchh
Confidence 76533 358999998886555443333222111 000 00111111 111111 23677888888888886
Q ss_pred c
Q 005439 240 P 240 (696)
Q Consensus 240 ~ 240 (696)
|
T Consensus 185 w 185 (1169)
T KOG1031|consen 185 W 185 (1169)
T ss_pred h
Confidence 4
No 123
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.2e-09 Score=121.23 Aligned_cols=107 Identities=32% Similarity=0.554 Sum_probs=86.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
-+|.|+|.|++|++|+.++..+. +||||++.+-.
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~ 333 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKR 333 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCce
Confidence 35999999999999998876654 89999999832
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
.++.||.+.+++.||+|||+|.|.++.. ...+.|+|||++.++ +++||.+.+.... .|.....|.+++...+.
T Consensus 334 ~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~ 410 (421)
T KOG1028|consen 334 LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRK 410 (421)
T ss_pred eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccC
Confidence 4567999999999999999999988763 346899999999998 7899998887765 45556677777655443
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=98.89 E-value=1.9e-08 Score=114.57 Aligned_cols=96 Identities=23% Similarity=0.444 Sum_probs=77.6
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCCC-eEEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~~-~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
.||||+|.+-+ ..+.+|+++.++.||+|||+|.|++..+.. -+.|+|+|.|..+ ++++|++.+|+..|..|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI-- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence 69999999854 445699999999999999999999887753 4799999999876 899999999999999986
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
+|++|.+..+.+.. ...|.+.+.|
T Consensus 575 -R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 575 -RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 59999776665432 3455555544
No 125
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.89 E-value=4.7e-10 Score=75.13 Aligned_cols=27 Identities=59% Similarity=1.015 Sum_probs=18.8
Q ss_pred cccCccceEEecCCCCCCCcceEEEEcccccCCcc
Q 005439 363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (696)
Q Consensus 363 ~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R 397 (696)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 47999999999998 9999999999864
No 126
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.88 E-value=7.6e-09 Score=96.49 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCcEEEEEECC--eeEEEeeeccCCCC--CeeeeEEEEeecCC------------------------CCeEEEEEEeCCC
Q 005439 80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV 131 (696)
Q Consensus 80 ~dpyv~v~~~~--~~~~~T~~~~~~~~--P~wne~f~~~~~~~------------------------~~~l~i~v~d~~~ 131 (696)
+||||++.+.+ ..+++|.|.+++.| |.||+.|.|++..+ ...|.++|||.|.
T Consensus 25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence 89999999976 56689999999988 99999999997762 2357999999999
Q ss_pred CC-CeeeEEEecccccccCCc
Q 005439 132 FG-AQIIGTAAIPAHTIATGE 151 (696)
Q Consensus 132 ~~-~~~iG~~~i~l~~l~~g~ 151 (696)
++ +++||.+.++|..+..+.
T Consensus 105 ~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 105 FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcceEEEEEhhhccccc
Confidence 98 899999999999887554
No 127
>PHA02820 phospholipase-D-like protein; Provisional
Probab=98.88 E-value=1.1e-08 Score=113.72 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=97.2
Q ss_pred HHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHH-HhhcCCEEEEEEeCCCCccCccCCCCCCc
Q 005439 244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV 322 (696)
Q Consensus 244 f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~-aA~rGV~VriLvwD~~gs~~~~~~~~~~~ 322 (696)
..++..+|.+||++|+|+.=-|-|.++...++..- ...+.++|++ |++|||+||||+ =... ....
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~y-----w~~i~~AL~~AA~~RGV~VriLv-p~~~--------d~~~ 285 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILF-----WPYIEDELRRAAIDRKVSVKLLI-SCWQ--------RSSF 285 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCcccc-----hHHHHHHHHHHHHhCCCEEEEEE-eccC--------CCCc
Confidence 57899999999999999976666764433222211 2489999996 567999999998 1110 0001
Q ss_pred ccCChHHHHhhhcCCCcEEE--ecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 323 ~~~~~~~~~~~l~~~gv~~~--~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
...........|...|+++. +. .+|.... ..+...-+|.|++|||+ .|++|..|+....+..
T Consensus 286 ~~~a~~~~l~~L~~~gv~I~Vk~y-~~p~~~~------~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~ 349 (424)
T PHA02820 286 IMRNFLRSIAMLKSKNINIEVKLF-IVPDADP------PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD 349 (424)
T ss_pred cHHHHHHHHHHHhccCceEEEEEE-EcCcccc------cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence 10001122334456787763 11 2221100 01112356999999995 8999999998844432
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC----hHHHHHHHHHHHHHHh
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRK 458 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~G----pav~dl~~~F~qrWn~ 458 (696)
. ..+.+.+.. +.+.+|.+.|.++|+.
T Consensus 350 n--------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s 379 (424)
T PHA02820 350 T--------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNS 379 (424)
T ss_pred c--------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCC
Confidence 1 256777765 4999999999999985
No 128
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=5e-09 Score=123.03 Aligned_cols=123 Identities=25% Similarity=0.380 Sum_probs=101.4
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (696)
.|.|+|.+..|.||++.|..+. +||||++.+..+..++
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence 7999999999999999888776 9999999999988899
Q ss_pred eeeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCceE
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI 173 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i 173 (696)
|++++++.||+|||+|.+++.. ....+++.|+|+|... ++.||++.++|+.+..+.....-.+| .... .....|.+
T Consensus 1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038 1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence 9999999999999999999985 4556899999999887 89999999999999987766555555 3222 22345666
Q ss_pred EEEEEEecC
Q 005439 174 QLELKFTPC 182 (696)
Q Consensus 174 ~l~l~~~~~ 182 (696)
+....|.+.
T Consensus 1155 ~~~~~~r~~ 1163 (1227)
T COG5038 1155 HPGFNFRSK 1163 (1227)
T ss_pred ecceecchh
Confidence 666665554
No 129
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=8.6e-09 Score=121.11 Aligned_cols=129 Identities=26% Similarity=0.442 Sum_probs=103.5
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
--|.|.|+|.+|++|...+..-. ++.|||+++.+.....+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~g 473 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIG 473 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCC
Confidence 34899999999999986552211 23899999999876668
Q ss_pred EeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCce-eEEEEEccCCCCCCCCCCce
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPKPGAS 172 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~-~~~w~~l~~~~~~~~~~~g~ 172 (696)
||++.+++.||+|||+|.+.+..-...|.|+|||.+.+. |+++|++.++|+.|..... ..+-+.++.. .+..|+
T Consensus 474 kT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~----~k~vGr 549 (1227)
T COG5038 474 KTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN----TKNVGR 549 (1227)
T ss_pred ccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc----CccceE
Confidence 999999999999999999999988899999999977665 9999999999998874332 2334555332 257899
Q ss_pred EEEEEEEecCCCCCc
Q 005439 173 IQLELKFTPCDKNPL 187 (696)
Q Consensus 173 i~l~l~~~~~~~~p~ 187 (696)
|...++|.|...+..
T Consensus 550 L~yDl~ffp~~e~k~ 564 (1227)
T COG5038 550 LTYDLRFFPVIEDKK 564 (1227)
T ss_pred EEEeeeeecccCCcc
Confidence 999999999876543
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.81 E-value=3.4e-08 Score=112.28 Aligned_cols=96 Identities=22% Similarity=0.449 Sum_probs=79.0
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
.||||+|.+-+ ....+|++..++.||+|||+|.|++.-|+ .-|+|.|+|+|... ++++|+..||+..|..|-
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-- 573 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-- 573 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence 79999999843 34469999999999999999999988775 45799999999865 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
+.++|++..+.+.. ...|.+++.|
T Consensus 574 -R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 574 -HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 46888777776543 4577777765
No 131
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=4.1e-08 Score=111.65 Aligned_cols=98 Identities=27% Similarity=0.512 Sum_probs=80.9
Q ss_pred CCcEEEEEECC----eeEEEee-eccCCCCCeeeeEEEEeecCCCCe-EEEEEEeCCCCC-CeeeEEEecccccccCCce
Q 005439 80 SDPYVTVVVPQ----ATVARTR-VLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~-~~~~~~~P~wne~f~~~~~~~~~~-l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~ 152 (696)
+||||.|.+.+ +...+|+ |..|+.||.|+|+|.|++..|+-. |+|.|+|.|..+ |+|+|+..||+..|..|-
T Consensus 641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy- 719 (746)
T KOG0169|consen 641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY- 719 (746)
T ss_pred CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence 89999999854 5567999 556699999999999999998755 699999999998 999999999999999885
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEec
Q 005439 153 ISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (696)
+-++|++..|... ...+|.+.+++.+
T Consensus 720 --RhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 720 --RHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred --eeeeecCCCCccc-cceeEEEEEEEec
Confidence 4477877666543 4678888888764
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.75 E-value=8.5e-08 Score=108.92 Aligned_cols=96 Identities=23% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
.||||+|.+.+ ..+.+|+++.++.||+|||+|.|.+..|. .-|.|.|+|.|..+ ++++|+..||+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 79999999953 44569999999999999999999988775 45799999998866 899999999999999885
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEE
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
+.++|++..+.+.. ...|.+.+.|
T Consensus 557 -R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 46888777776544 4577777765
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=98.71 E-value=1.3e-07 Score=107.22 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=82.4
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCee-eeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCce
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~w-ne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~ 152 (696)
.||||+|.+.+ ....+|++++++.||+| ||+|.|.+..+. .-|.|.|+|.|..+ ++++|++.||+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 79999999843 34469999999999999 999999988775 45799999998776 899999999999999885
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEecC
Q 005439 153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (696)
+.++|++..+.... .++|.+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 46788777776543 5789999888764
No 134
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.63 E-value=1.5e-07 Score=83.11 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=56.5
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEeccccccc
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~ 148 (696)
+||||.+.++...++||++ +.||.|||+|.|++. -...++|.|||...-..-.||-.-+.+++|.
T Consensus 23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 8999999999987789987 489999999999995 4778999999986655678899889888876
No 135
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.43 E-value=1.1e-06 Score=99.37 Aligned_cols=126 Identities=25% Similarity=0.391 Sum_probs=94.2
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
+..-+|.|+|+.||.||... .+. ..|||+|++-+
T Consensus 1062 l~p~~lsv~vigaRHL~k~g-------------------------------r~i------------~cPfVevEiiGa~~ 1098 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKLG-------------------------------RSI------------ACPFVEVEIIGAEY 1098 (1267)
T ss_pred ccceEEEEEEeeccccccCC-------------------------------CCc------------cCCcEEEEEecccc
Confidence 45567899999999998322 111 56999999844
Q ss_pred --eeEEEeeeccCCCCCeee-eEEEEeecCCCC-eEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCC
Q 005439 91 --ATVARTRVLKNSQEPVWN-EHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS 165 (696)
Q Consensus 91 --~~~~~T~~~~~~~~P~wn-e~f~~~~~~~~~-~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~ 165 (696)
....+|.|..|..||+|| |+|+|.+..|.- -|++.|++.|+++ ..|||++..|+..+..|- +-++| .+.-+
T Consensus 1099 Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpL-kN~yS 1174 (1267)
T KOG1264|consen 1099 DTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPL-KNGYS 1174 (1267)
T ss_pred CCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeec-ccCch
Confidence 333455667789999999 999999999864 4799999999999 489999999999999884 45777 33222
Q ss_pred CCCCCceEEEEEEEecCCCCC
Q 005439 166 PPKPGASIQLELKFTPCDKNP 186 (696)
Q Consensus 166 ~~~~~g~i~l~l~~~~~~~~p 186 (696)
..-...+|.+.+...|.....
T Consensus 1175 EdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1175 EDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred hhhhhhhheeeeEeccccCcc
Confidence 222356778888888876543
No 136
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.38 E-value=4.5e-06 Score=89.74 Aligned_cols=166 Identities=17% Similarity=0.292 Sum_probs=106.5
Q ss_pred CCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEe
Q 005439 227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (696)
Q Consensus 227 ~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvw 306 (696)
+|.-....|+.- =.++|.+.|.+|+++|||.--...|...... +. .-+.|+++|++||=|||+||+|+
T Consensus 265 SP~~~~~~grt~----DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k-~~------~fw~iDdaiR~aa~RgV~vR~lv- 332 (456)
T KOG3603|consen 265 SPPPLNPSGRTW----DLEAILNTIDEAQKFVYISVMDYFPSTIYSK-NH------RFWEIDDAIRRAAVRGVKVRLLV- 332 (456)
T ss_pred CCCCCCCCCCch----hHHHHHHHHHHHhhheeeeehhccchheeec-Cc------chhhhhHHHHHHhhcceEEEEEE-
Confidence 566666777643 2789999999999999997666666543322 22 13689999999999999999998
Q ss_pred CCCCccCccCCCCCCccc-CCh-HHHHhhhcCCCcEEEe--cCCCCCCccchhhcccccccccCccceEEecCCCCCCCc
Q 005439 307 DDKTSHDKLGVKTPGVMA-THD-EETKKFFKHSSVNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNR 382 (696)
Q Consensus 307 D~~gs~~~~~~~~~~~~~-~~~-~~~~~~l~~~gv~~~~--~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~ 382 (696)
-...- ...++-. .++ ......+++-.|+|.+ .|.-.. ...+....+|.|.+|=+.
T Consensus 333 s~~~~------~~~~m~~~L~SLq~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~------- 391 (456)
T KOG3603|consen 333 SCWKH------SEPSMFRFLRSLQDLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES------- 391 (456)
T ss_pred eccCC------CCchHHHHHHHHHHhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec-------
Confidence 22210 0000000 000 0011112355666653 332111 123445689999999987
Q ss_pred ceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeee-----EeChHHHHHHHHHHHHHH
Q 005439 383 KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-----LDGPAAYDVLINFEQRWR 457 (696)
Q Consensus 383 ~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~-----v~Gpav~dl~~~F~qrWn 457 (696)
.||+|--|.+-+||-... -+++. -.|+.+.+|...|..+|+
T Consensus 392 --aayIGTSNws~dYf~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~ 437 (456)
T KOG3603|consen 392 --AAYIGTSNWSGDYFTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWN 437 (456)
T ss_pred --ceeeeccCCCccceeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccc
Confidence 899999999998874321 01111 357899999999999998
Q ss_pred hh
Q 005439 458 KA 459 (696)
Q Consensus 458 ~~ 459 (696)
..
T Consensus 438 S~ 439 (456)
T KOG3603|consen 438 ST 439 (456)
T ss_pred cc
Confidence 53
No 137
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.34 E-value=9.8e-05 Score=79.67 Aligned_cols=259 Identities=17% Similarity=0.164 Sum_probs=142.9
Q ss_pred hHHHHHHHHHhccceEEEEEEEEee---ceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCC
Q 005439 243 CWEDICHAISEAHHLIYIVGWSVFH---KIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT 319 (696)
Q Consensus 243 ~f~~l~~aI~~Ak~~I~I~~w~~~p---~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~ 319 (696)
.+++-++.|++|+++++|..|-.+- ++++ ++. - ...+..+...|..++.+||.||+.. ..... ..
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~--~ds-S--t~~G~~vy~~L~~~~~~gIsiriA~-~~p~~-~~----- 140 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGV--VDS-S--TQYGEQVYNTLLALAKSGVKIRIAQ-SYPSG-GP----- 140 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceecc--CCC-c--chHHHHHHHHHHHhccCCeEEEEEe-ecCCC-CC-----
Confidence 4688899999999999997654431 1111 011 0 1013789999999999999999997 44311 10
Q ss_pred CCcccCChHHHHhhhcCCC-cEEEe--cCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCc
Q 005439 320 PGVMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (696)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~g-v~~~~--~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~ 396 (696)
...-...|+..| ++++- ..+++.+ .-.|-|+.|||++ -=|+||.|+..
T Consensus 141 -------~~~d~~~Le~~Gaa~vr~id~~~l~g~-------------GvlHtKf~vvD~k--------hfylGSaNfDW- 191 (456)
T KOG3603|consen 141 -------PNADLQVLESLGLAQVRSIDMNRLTGG-------------GVLHTKFWVVDIK--------HFYLGSANFDW- 191 (456)
T ss_pred -------CcccHHHHHhCCCceEEeecccccccC-------------ceEEEEEEEEecc--------eEEEeccccch-
Confidence 112234566666 66551 1122211 1349999999998 88999999977
Q ss_pred cCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeC--hHHHHHHHHHHHHHHhhcccchhhhhhccccc
Q 005439 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474 (696)
Q Consensus 397 R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~G--pav~dl~~~F~qrWn~~~~~~~~~~~~~~~~~ 474 (696)
|=.|.- -.+++.+.- -.++||...|.++|+.-.... . .-++
T Consensus 192 rSlTqv-------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s-----~-~p~~ 234 (456)
T KOG3603|consen 192 RSLTQV-------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKS-----L-IPKK 234 (456)
T ss_pred hhccce-------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCc-----c-CCCC
Confidence 433310 123333322 378999999999998633221 0 0001
Q ss_pred ccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhcccccccc
Q 005439 475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 554 (696)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~ 554 (696)
|....-. +-+ . ..|- . . ..+......++..|- . .+ .+ +|
T Consensus 235 wp~~~st----------~~N-----~--~~p~----~--~-~~dg~~~~~y~saSP--~---~~--~~---------~g- 273 (456)
T KOG3603|consen 235 WPNCYST----------HYN-----K--PLPM----K--I-AVDGTPATPYISASP--P---PL--NP---------SG- 273 (456)
T ss_pred Ccccccc----------ccc-----c--cCcc----e--e-ecCCCCcceEEccCC--C---CC--CC---------CC-
Confidence 1100000 000 0 0000 0 0 001112233343331 0 11 00 11
Q ss_pred CccchhHHHHHHHHHHHhccceEEEe-eeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCC
Q 005439 555 DVVIDKSIQTAYIQAIRSAQHFIYIE-NQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 633 (696)
Q Consensus 555 ~~~~e~sI~~ayl~~I~~Ak~~IYIE-nqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G 633 (696)
.+.. .+|.+..|..|+.||||. -+||=+.... + . ++-- +|=.+|.+|. -|||+|++++..++.-
T Consensus 274 ---rt~D-L~ail~~i~~A~~fv~isVMdY~Ps~~y~----k--~--~~fw-~iDdaiR~aa--~RgV~vR~lvs~~~~~ 338 (456)
T KOG3603|consen 274 ---RTWD-LEAILNTIDEAQKFVYISVMDYFPSTIYS----K--N--HRFW-EIDDAIRRAA--VRGVKVRLLVSCWKHS 338 (456)
T ss_pred ---Cchh-HHHHHHHHHHHhhheeeeehhccchheee----c--C--cchh-hhhHHHHHHh--hcceEEEEEEeccCCC
Confidence 1223 369999999999999995 5666444321 1 1 1112 6667887774 4999999999988654
Q ss_pred CC
Q 005439 634 DP 635 (696)
Q Consensus 634 ~~ 635 (696)
++
T Consensus 339 ~~ 340 (456)
T KOG3603|consen 339 EP 340 (456)
T ss_pred Cc
Confidence 44
No 138
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.32 E-value=1.5e-07 Score=105.25 Aligned_cols=90 Identities=20% Similarity=0.453 Sum_probs=74.1
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCC----------------------------------C---CCe
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDV----------------------------------F---GAQ 135 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~----------------------------------~---~~~ 135 (696)
.-|.|+++|.||.|+|.|.|.+.+.. ..+.+.+||+|- . .||
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 36888889999999999999998864 458899998861 0 168
Q ss_pred eeEEEecccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEecCCCC
Q 005439 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 136 ~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (696)
|+|++.|||.++... ..+.||.| .++....+.+|.++|.++......+
T Consensus 259 FLGciNipl~EiP~~-Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPPD-GLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cccccccchhcCCcc-hHHHHhcc-CcccccccccceEEEEEEEeeeccc
Confidence 999999999999843 47899999 7777777899999999999876553
No 139
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.30 E-value=3.4e-06 Score=94.70 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=95.1
Q ss_pred HHHHHHHHhccceEEEEE-EEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcc
Q 005439 245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM 323 (696)
Q Consensus 245 ~~l~~aI~~Ak~~I~I~~-w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~ 323 (696)
..+..+|.+|+++|+|+. |.+ +. ..+.++|+.++++||+|+|++ +..+..... ..
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~---------~~--------~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV---------PD--------RELLAALKAAARRGVDVRIII-PSLGANDSA------IV 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC---------CC--------HHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HH
Confidence 679999999999999995 543 21 678899999999999999997 743211100 00
Q ss_pred cCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCC
Q 005439 324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 403 (696)
Q Consensus 324 ~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H 403 (696)
........+.+.+.|+++.. ++.. ...|.|++|||++ ++++|+.|+...-+..
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~---~~~g-------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYE---YPGG-------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEE---ecCC-------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00112345566788998752 2210 2459999999998 9999999998832211
Q ss_pred CcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhh
Q 005439 404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA 459 (696)
Q Consensus 404 ~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~~ 459 (696)
+ -.+.+.|+.+ .+.++...|...|...
T Consensus 382 ------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 ------------N-----------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 1567777777 8899999999777654
No 140
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.21 E-value=4.6e-07 Score=101.46 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=80.0
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
.-+.+|.|.|+.|+++-+.|.+|. +||||.|++..
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~ 981 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFR 981 (1103)
T ss_pred ccccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccc
Confidence 346679999999999998888776 99999999964
Q ss_pred ---eeEEEeeeccCCCCCeeeeEEEEeecCCC-----CeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 91 ---~~~~~T~~~~~~~~P~wne~f~~~~~~~~-----~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
...++|+|++.|.||+|+|+|.|.++... .-+.|+|+|+|-++ +||-|.+.+.|..+.
T Consensus 982 fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 982 FPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 45679999999999999999999998742 23799999999998 899999999988765
No 141
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.04 E-value=4.1e-05 Score=85.89 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=90.6
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCC
Q 005439 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (696)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~ 321 (696)
.....+.++|.+|+++|+|+ +| |+. +. ..+.++|++++++||+|+||+ -+..+..++.-....
T Consensus 251 ~l~~~~~~li~~A~~~i~I~----TP--YF~--p~--------~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~~ 313 (451)
T PRK09428 251 LLNKTIFHLMASAEQKLTIC----TP--YFN--LP--------AILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDEP 313 (451)
T ss_pred HHHHHHHHHHhccCcEEEEE----eC--CcC--CC--------HHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCccH
Confidence 45677889999999999987 55 333 21 589999999999999999998 554322211101111
Q ss_pred cccCCh-HHHH-----------hhhcCCC---cEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEE
Q 005439 322 VMATHD-EETK-----------KFFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (696)
Q Consensus 322 ~~~~~~-~~~~-----------~~l~~~g---v~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vA 386 (696)
+..... .... ..+..+| |++.. ++ .++.|-|.++||++ ++
T Consensus 314 ~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~--------~~ 368 (451)
T PRK09428 314 FKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR--------WM 368 (451)
T ss_pred HHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEe---cC--------------CCcceEEEEEEeCC--------EE
Confidence 110000 0000 0122344 44331 21 24669999999998 99
Q ss_pred EEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHh
Q 005439 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK 458 (696)
Q Consensus 387 fvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~ 458 (696)
++||.|+...-|.- |+ .+.+.|..|. ..|...|.+....
T Consensus 369 ~iGS~Nld~RS~~l---------------n~-----------------E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 369 LLTGNNLNPRAWRL---------------DL-----------------ENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred EEcCCCCChhHhhh---------------cc-----------------cceEEEECCh-HHHHHHHHHHHHH
Confidence 99999998843431 11 5677777777 7888888888764
No 142
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.92 E-value=9e-06 Score=95.58 Aligned_cols=107 Identities=21% Similarity=0.455 Sum_probs=87.4
Q ss_pred eeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC
Q 005439 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (696)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (696)
++.|-.|+|.|-|.-|++|+-.. ||.. +||||+.++-.
T Consensus 1518 sIsY~~~~LtImV~H~K~L~~Lq-----------------------------dg~~-------------P~pyVK~YLlP 1555 (1639)
T KOG0905|consen 1518 SISYNNGTLTIMVMHAKGLALLQ-----------------------------DGQD-------------PDPYVKTYLLP 1555 (1639)
T ss_pred EEEEcCceEEEEhhhhccccccc-----------------------------CCCC-------------CCcceeEEecC
Confidence 35678999999999999996322 2222 89999999942
Q ss_pred ----eeEEEeeeccCCCCCeeeeEEEEe-ecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ----ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ----~~~~~T~~~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||+|+++|.+|.|||..... ++.. ...|.++||..+.+. +.++|.+.|+|..+...++..+||.|
T Consensus 1556 dp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1556 DPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred CchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 556799999999999999998877 3322 356899999998887 89999999999999877777799999
No 143
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.74 E-value=5.1e-05 Score=85.75 Aligned_cols=107 Identities=17% Similarity=0.359 Sum_probs=81.6
Q ss_pred CCCcEEEEEECC---eeEEEeeeccCCCCCeeeeEEEEeecCC----------------CCeEEEEEEeC-CCCC-Ceee
Q 005439 79 TSDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDD-DVFG-AQII 137 (696)
Q Consensus 79 ~~dpyv~v~~~~---~~~~~T~~~~~~~~P~wne~f~~~~~~~----------------~~~l~i~v~d~-~~~~-~~~i 137 (696)
++|||+++...+ ....+|++.++|.+|.|+|.|.|.+... ...|.+.+|++ +... ++|+
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl 229 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL 229 (800)
T ss_pred CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence 389999999854 2235999999999999999999998765 23478899984 4444 8999
Q ss_pred EEEecccccccCCceeEEEEEccCC-CCC---CCCCCceEEEEEEEecCCCC
Q 005439 138 GTAAIPAHTIATGELISRWYDIIAP-SGS---PPKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 138 G~~~i~l~~l~~g~~~~~w~~l~~~-~~~---~~~~~g~i~l~l~~~~~~~~ 185 (696)
|.+.+|+..+.....-..||.|... +++ ....-|.++|.++|....-.
T Consensus 230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vl 281 (800)
T KOG2059|consen 230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVL 281 (800)
T ss_pred eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceec
Confidence 9999999988755567789998432 222 23457899999999876543
No 144
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.62 E-value=0.00012 Score=67.00 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=64.3
Q ss_pred CCCcEEEEEE---CCeeEEEeeeccCCCCCeeeeEEEEeecC----------------CCCeEEEEEEeCCCC-------
Q 005439 79 TSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF------- 132 (696)
Q Consensus 79 ~~dpyv~v~~---~~~~~~~T~~~~~~~~P~wne~f~~~~~~----------------~~~~l~i~v~d~~~~------- 132 (696)
+.++||++.+ ++....+|+++.++..|.|+.++.|+++- ....+.++||+...-
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 4799999996 34556799999999999999999999772 124578999986532
Q ss_pred ----CCeeeEEEecccccccC-CceeEEEEEc
Q 005439 133 ----GAQIIGTAAIPAHTIAT-GELISRWYDI 159 (696)
Q Consensus 133 ----~~~~iG~~~i~l~~l~~-g~~~~~w~~l 159 (696)
+|-++|++.||+.+|.. ...+.+||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 25689999999998863 4458899985
No 145
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.47 E-value=8.7e-05 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred ccCccceEEecCCCCCCCcceEEEEcccccCC
Q 005439 364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 395 (696)
Q Consensus 364 ~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~ 395 (696)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4789999999998 99999999987
No 146
>PF13918 PLDc_3: PLD-like domain
Probab=97.45 E-value=0.0006 Score=66.39 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=54.1
Q ss_pred CCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHh-hcCCEEEEE
Q 005439 226 ILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLL 304 (696)
Q Consensus 226 ~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA-~rGV~VriL 304 (696)
.+|+.....|+... .++++..|++|+++|||+--..-|.+.. ..+.+-| ..|+++|++|| +|||+||+|
T Consensus 70 sSPp~~~~~gRT~D----ldAIl~~I~~A~~fI~IsVMdY~P~~~~-~~~~~YW-----P~ID~ALR~AA~~R~V~VRlL 139 (177)
T PF13918_consen 70 SSPPPFCPKGRTLD----LDAILSVIDSAKKFIYISVMDYLPTSRY-SKPNRYW-----PVIDDALRRAAIERGVKVRLL 139 (177)
T ss_pred CCCcccCCCCCCcH----HHHHHHHHHhHhheEEEEEeecCCeeec-CCCCCcc-----hhHHHHHHHHHHHcCCeEEEE
Confidence 36777777787653 6899999999999999988877885431 2222223 47999999997 799999999
Q ss_pred E
Q 005439 305 V 305 (696)
Q Consensus 305 v 305 (696)
+
T Consensus 140 I 140 (177)
T PF13918_consen 140 I 140 (177)
T ss_pred E
Confidence 8
No 147
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00016 Score=76.74 Aligned_cols=109 Identities=23% Similarity=0.402 Sum_probs=87.4
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
-.|+|+|.|++|++|........ .++|||+|++-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~-----------------------------------------~~apyVkVYlL~~g~c 305 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKS-----------------------------------------LPAPYVKVYLLENGFC 305 (405)
T ss_pred ccCceeEEEEecccccccCCccc-----------------------------------------ccCceeEEEEcCCCce
Confidence 35789999999999976432221 289999999832
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeC-CCCC-CeeeEEEecccccccCCc-eeEEEEEccCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFG-AQIIGTAAIPAHTIATGE-LISRWYDIIAPSG 164 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~-~~~~-~~~iG~~~i~l~~l~~g~-~~~~w~~l~~~~~ 164 (696)
..+.+|+...+|.+|.+.+...|.-..+...|.++||.. .... +.|+|.+.+-++++..+. ...+||++.....
T Consensus 306 ~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 306 IAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred ecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 335689999999999999999999888999999999964 4444 689999999999998766 7889999965543
No 148
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.27 E-value=0.00019 Score=76.69 Aligned_cols=99 Identities=15% Similarity=0.299 Sum_probs=80.8
Q ss_pred CCcEEEEEEC----CeeEEEeeeccCCCCCeeeeEEEEeecCC------------CCeEEEEEEeCCCCC--CeeeEEEe
Q 005439 80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA 141 (696)
Q Consensus 80 ~dpyv~v~~~----~~~~~~T~~~~~~~~P~wne~f~~~~~~~------------~~~l~i~v~d~~~~~--~~~iG~~~ 141 (696)
.|-||++++. .....+|.+++++.+|.|+|.|.+.+... ...+.|+++.+..|- |.++|++.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 6889998873 33456999999999999999999998772 134799999998774 89999999
Q ss_pred cccccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEec
Q 005439 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 142 i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (696)
+.|.-|...-+++..++|.+.+. ..+|.|.++++...
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIRQ 504 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEec
Confidence 99999998888889999955443 45899999988654
No 149
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00032 Score=73.29 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=79.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|++++|..|..+|..+. +||||...+..
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~ 268 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGK 268 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcch
Confidence 45668999999999998887776 99999999843
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
.-+.||.+.+++.+|.||++|.+.+.+. ...+.|.|||.+.-+ .+++|-+.... ...++....|+.-+
T Consensus 269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~~ 340 (362)
T KOG1013|consen 269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRCL 340 (362)
T ss_pred hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCccccc
Confidence 3456999999999999999999998874 356899999998875 78888755433 35566666776543
No 150
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0015 Score=72.93 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=67.3
Q ss_pred CCcEEEEEECC------eeEEEeeeccCCCCCeeeeEEEEeecCCC----CeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~~------~~~~~T~~~~~~~~P~wne~f~~~~~~~~----~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
--|||+|.+-+ .+++.|+...++..|.+||+|.|-+.... -.|.+.|+|.-... |.++|-+.++|.++.
T Consensus 1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence 46999999732 56788999999999999999999988754 34788998887766 799999999999998
Q ss_pred CCceeEEEEEc
Q 005439 149 TGELISRWYDI 159 (696)
Q Consensus 149 ~g~~~~~w~~l 159 (696)
.......|++|
T Consensus 1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred hcCceeEeeec
Confidence 66677899999
No 151
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.88 E-value=0.012 Score=61.56 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=95.2
Q ss_pred ccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHH
Q 005439 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (696)
Q Consensus 209 ~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~ 288 (696)
..-.++++|..-.. ++ . ..+=+.+.+.|.+|++.|-|..=.|+ |. .-|.
T Consensus 116 ~g~Tr~~vy~qPp~-~~-~-------------p~IKE~vR~~I~~A~kVIAIVMD~FT-------D~---------dIf~ 164 (284)
T PF07894_consen 116 KGVTRATVYFQPPK-DG-Q-------------PHIKEVVRRMIQQAQKVIAIVMDVFT-------DV---------DIFC 164 (284)
T ss_pred cCCceEEEEeCCCC-CC-C-------------CCHHHHHHHHHHHhcceeEEEeeccc-------cH---------HHHH
Confidence 44478999986421 11 1 23456788999999999999866553 11 4577
Q ss_pred HHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCcc
Q 005439 289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQ 368 (696)
Q Consensus 289 ~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHq 368 (696)
++|.++-+|||-||||+ |..+...++.... .+..+ ...+ .|+.++...- ..+..+.....-...|+
T Consensus 165 DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~--~~~v~----~~~~--~nmrVRsv~G-----~~y~~rsg~k~~G~~~e 230 (284)
T PF07894_consen 165 DLLEAANKRGVPVYILL-DEQNLPHFLEMCE--KLGVN----LQHL--KNMRVRSVTG-----CTYYSRSGKKFKGQLKE 230 (284)
T ss_pred HHHHHHHhcCCcEEEEe-chhcChHHHHHHH--HCCCC----hhhc--CCeEEEEecC-----CeeecCCCCeeeCcccc
Confidence 76666669999999998 9875422110000 00000 0112 2333331100 00111001122346799
Q ss_pred ceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHH
Q 005439 369 KCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDV 448 (696)
Q Consensus 369 K~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl 448 (696)
|+++||++ .+..|+-=.+.. +.+-| | -+...++|.+|...
T Consensus 231 KF~lvD~~--------~V~~GSYSFtWs--~~~~~--------------------------r----~~~~~~tGq~Ve~F 270 (284)
T PF07894_consen 231 KFMLVDGD--------KVISGSYSFTWS--SSRVH--------------------------R----NLVTVLTGQIVESF 270 (284)
T ss_pred eeEEEecc--------cccccccceeec--ccccc--------------------------c----ceeEEEeccccchH
Confidence 99999998 888887644331 11111 1 46789999999999
Q ss_pred HHHHHHHH
Q 005439 449 LINFEQRW 456 (696)
Q Consensus 449 ~~~F~qrW 456 (696)
.+.|..-.
T Consensus 271 D~EFR~Ly 278 (284)
T PF07894_consen 271 DEEFRELY 278 (284)
T ss_pred hHHHHHHH
Confidence 99997764
No 152
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=96.79 E-value=0.0029 Score=61.59 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCC
Q 005439 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 632 (696)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~ 632 (696)
+.++.+.++++|.+|++.|+|+++||.+.. ......|..+|.+|.+ +|++|+|++...+.
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~--rGv~V~il~~~~~~ 78 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAAR--RGVKVRILVDEWSN 78 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHH--CCCEEEEEEccccc
Confidence 578999999999999999999999999641 0001478899998854 69999999997654
No 153
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.00032 Score=73.34 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=92.5
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
...++.+|.+|++|..++..+. .|||++..+.. .
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl 129 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKL 129 (362)
T ss_pred hhhcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhh
Confidence 3557899999999999887775 89999999843 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCc--eeEEEEEccCCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDIIAPSG 164 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~--~~~~w~~l~~~~~ 164 (696)
...+|++..++.||.|+|......-.. .+.+.+.|.|.+.+. ++++|+..+++..+.+.+ ....|+.-..+.+
T Consensus 130 ~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~ 209 (362)
T KOG1013|consen 130 NSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSE 209 (362)
T ss_pred hhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcc
Confidence 336889999999999999876663221 345678888888887 799999999988887543 3344544322211
Q ss_pred C----CCCCCceEEEEEEEecCCC
Q 005439 165 S----PPKPGASIQLELKFTPCDK 184 (696)
Q Consensus 165 ~----~~~~~g~i~l~l~~~~~~~ 184 (696)
. ..+..|+|.+++.|.....
T Consensus 210 rad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 210 RADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred cccccchhhccceeeeeccCcCCC
Confidence 1 2356899999999876543
No 154
>PLN02964 phosphatidylserine decarboxylase
Probab=96.72 E-value=0.0022 Score=74.43 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCe-EEEEEEeCCCCC-CeeeEEEecccccccCCce--eEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR 155 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~-l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~--~~~ 155 (696)
.|+|..+..-+.+++||.+.++|.||+|||...|.+...... ..+.|||.+.++ ++++|.+.++|..+...+. ..+
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 688888777677779999999999999999999998876544 599999999998 8999999999887765433 222
Q ss_pred EEEccCCCC
Q 005439 156 WYDIIAPSG 164 (696)
Q Consensus 156 w~~l~~~~~ 164 (696)
-|.++++++
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 255655543
No 155
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.72 E-value=0.0012 Score=56.44 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=56.2
Q ss_pred CcEEEE--EECCeeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEE
Q 005439 81 DPYVTV--VVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISR 155 (696)
Q Consensus 81 dpyv~v--~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~ 155 (696)
.-|++- .++....+||.+.+.+.||+|.|+|.|++.-. ...|.|.|+. ..-....||.+.+.+.++.. ++.++
T Consensus 22 ~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~H 99 (103)
T cd08684 22 TIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLST-QETDH 99 (103)
T ss_pred eeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCCH-HHhhh
Confidence 345543 34565668999999999999999999997653 3456778877 33347999999999987763 34567
Q ss_pred EEEc
Q 005439 156 WYDI 159 (696)
Q Consensus 156 w~~l 159 (696)
|.++
T Consensus 100 W~e~ 103 (103)
T cd08684 100 WLEI 103 (103)
T ss_pred hhcC
Confidence 7653
No 156
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.67 E-value=0.00046 Score=80.86 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=82.1
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeec----------CCCCeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLA----------HPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~----------~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
+|||..+.+-++. ..|-++.+|.||.|+++..|.-- .....+.++|+|.+..+ ++++|..........
T Consensus 227 sdp~a~v~f~~qs-~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~ 305 (1105)
T KOG1326|consen 227 SDPDAAVEFCGQS-KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMV 305 (1105)
T ss_pred CCchhhhhccccc-ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEe
Confidence 8999999987766 48999999999999999888711 11234689999999988 899999877554333
Q ss_pred CCceeEEEEEccCCCCCCCCCCceEEEEEEEecCCCCCccccccCCCCCcCCccCcCCCCccCceeEEEE
Q 005439 149 TGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQ 218 (696)
Q Consensus 149 ~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~p~~~~gi~~~~~~~gv~~s~~P~~~gn~v~l~~ 218 (696)
. .....|+++.... ...|++.++.....-.....+-.-+.- ..+.+++....|......++++-
T Consensus 306 ~-~p~lkw~p~~rg~----~l~gd~l~a~eliq~~~~i~~p~~~~~-~~~~~vp~~iRp~~q~~~~evl~ 369 (1105)
T KOG1326|consen 306 Q-CPALKWVPTMRGA----FLDGDVLIAAELIQIGKPIPQPPPQRE-IIFSLVPKKIRPKTQIGKAELLM 369 (1105)
T ss_pred c-CCccceEEeeccc----ccccchhHHHHHHhhcCCCCCCCcccc-cceeccccCCCcceeeeeeehhh
Confidence 2 3456899994332 345555554433222221111111110 23445555556655555555543
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.67 E-value=0.00098 Score=78.23 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=72.7
Q ss_pred EEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-EEEe
Q 005439 18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART 96 (696)
Q Consensus 18 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~~~T 96 (696)
.++|.|++|-+|.+.|..+. +|||+.+.+++.. .-++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~ 651 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA 651 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence 46788899999987776664 8999999998744 3477
Q ss_pred eeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccc
Q 005439 97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAH 145 (696)
Q Consensus 97 ~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~ 145 (696)
..+.++.||+|.+.|.+.+.-+. ..+++.|+|+|.++ ++.||...+.|+
T Consensus 652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 78889999999999999988775 45799999999998 999999999886
No 158
>PRK13912 nuclease NucT; Provisional
Probab=96.67 E-value=0.0043 Score=61.08 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCC
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 632 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~ 632 (696)
..+...++++|.+|++.|+|+. |++++ ..++.+|.+| +++||+|.|+++...+
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~A--a~RGV~VrIlld~~~~ 84 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSA--AKRGVKISIIYDYESN 84 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHH--HHCCCEEEEEEeCccc
Confidence 5678899999999999999996 77765 2788899888 4699999999996543
No 159
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.28 E-value=0.063 Score=58.06 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=81.2
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecC--------CCCeEEEEEEeCCCC-C-CeeeEEEecccccc--
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH--------PLSNLEIQVKDDDVF-G-AQIIGTAAIPAHTI-- 147 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~--------~~~~l~i~v~d~~~~-~-~~~iG~~~i~l~~l-- 147 (696)
..-.+...+++.. ..|..+..+..|.||..+.+.+.. ....|+++++..+.. + ...||.+.++|...
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 4567888888877 488888889999999999998765 246799999998833 3 69999999999888
Q ss_pred -cCC--ceeEEEEEccCCCCCCCCCCceEEEEEEEecCCC
Q 005439 148 -ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (696)
Q Consensus 148 -~~g--~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (696)
..+ .....||+|+..+.+-.+.+.+|.|.|.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 544 4567899998875544455788888888877654
No 160
>PRK05443 polyphosphate kinase; Provisional
Probab=96.00 E-value=0.045 Score=64.66 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=82.1
Q ss_pred cchHHHHHHHHHhccc----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 005439 241 GTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~ 316 (696)
..+.+.+..+|.+||+ +|+|..--+ + +..+.++|..|+++||+|++|| .++-++ .+|
T Consensus 512 ~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l---------~--------d~~ii~aL~~As~~GV~V~liV-RGiC~l-~pg 572 (691)
T PRK05443 512 ERLLELIDREIANARAGKPARIIAKMNSL---------V--------DPQIIDALYEASQAGVKIDLIV-RGICCL-RPG 572 (691)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCC---------C--------CHHHHHHHHHHHHCCCeEEEEE-eccccc-CCC
Confidence 4566667778999998 999873322 1 2689999999999999999998 766332 222
Q ss_pred CCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCc
Q 005439 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (696)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~ 396 (696)
++.. ..++.+. +++ +.+.. |-|+...+.. +...+|+|+.|+...
T Consensus 573 ipg~---------------sd~i~v~----------s~v-----~r~Le-h~rIy~f~~g-----d~~~~~iGSAn~d~R 616 (691)
T PRK05443 573 VPGL---------------SENIRVR----------SIV-----GRFLE-HSRIYYFGNG-----GDEEVYISSADWMPR 616 (691)
T ss_pred CCCC---------------CCCEEEH----------HHH-----HHHHh-cCEEEEEeCC-----CCcEEEEECCCCCcc
Confidence 2210 0112221 011 11122 4566666321 012999999998773
Q ss_pred cCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChH-HHHHHHHHHHHHHhh
Q 005439 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKA 459 (696)
Q Consensus 397 R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpa-v~dl~~~F~qrWn~~ 459 (696)
-++- -.++.+-|..|. ++.|...|...|...
T Consensus 617 sl~~--------------------------------r~Ev~~~i~d~~~~~~l~~~~~~~l~dn 648 (691)
T PRK05443 617 NLDR--------------------------------RVEVLFPILDPRLKQRLLEILEIQLADN 648 (691)
T ss_pred cccc--------------------------------eEEEeEEEeCHHHHHHHHHHHHHHHhhh
Confidence 2221 148888888874 666778899998754
No 161
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=95.86 E-value=0.052 Score=63.85 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=86.5
Q ss_pred ecCCCCCCCccchHHHHHHHHHhccc----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEe
Q 005439 231 PLDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306 (696)
Q Consensus 231 ~l~~g~~y~~~~~f~~l~~aI~~Ak~----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvw 306 (696)
.|..|+......+.+.+..+|.+||+ +|+|..--+ . +..+.++|.+|+++||+|++|+
T Consensus 493 ~l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~-----------D~~ii~aL~~As~aGV~V~Liv- 554 (672)
T TIGR03705 493 HLLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V-----------DPDLIDALYEASQAGVKIDLIV- 554 (672)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C-----------CHHHHHHHHHHHHCCCeEEEEE-
Confidence 35556555545566667778999998 999873322 1 2689999999999999999998
Q ss_pred CCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEE
Q 005439 307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA 386 (696)
Q Consensus 307 D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vA 386 (696)
.++=++. +|++. . ..++.+. . + .+.+.. |-|+...... +...+
T Consensus 555 RGiCcL~-pgipg--~-------------sd~i~v~---s-------i-----v~r~Le-h~rIy~f~~~-----~d~~~ 597 (672)
T TIGR03705 555 RGICCLR-PGVPG--L-------------SENIRVR---S-------I-----VGRFLE-HSRIYYFGNG-----GEEKV 597 (672)
T ss_pred ecccccC-CCCCC--C-------------CCCEEEE---E-------E-----hhHhhC-cCEEEEEeCC-----CCcEE
Confidence 7663321 22221 1 1223332 0 0 111233 6777776432 11299
Q ss_pred EEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHH-HH-HHHHHHHh
Q 005439 387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDV-LI-NFEQRWRK 458 (696)
Q Consensus 387 fvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl-~~-~F~qrWn~ 458 (696)
|+|+.|+...-++- -..+.+-|..|....- .. .+...|+.
T Consensus 598 ~igSAn~m~Rnl~~--------------------------------r~E~~~~i~d~~~~~~l~~~il~~~l~D 639 (672)
T TIGR03705 598 YISSADWMTRNLDR--------------------------------RVEVLFPIEDPTLKQRVLDEILEAYLAD 639 (672)
T ss_pred EEECCCCCCCcccc--------------------------------eEEEEEEEcCHHHHHHHHHHHHHHhCcc
Confidence 99999987732221 1388888888865544 35 56666654
No 162
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.80 E-value=0.044 Score=64.07 Aligned_cols=98 Identities=22% Similarity=0.340 Sum_probs=74.2
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (696)
..+.+++.|+|+++.-|..++ ...||+|.+-+
T Consensus 699 gvIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP 732 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLP 732 (1189)
T ss_pred ceEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCC
Confidence 357889999999998887543 45799999832
Q ss_pred ----eeEEEeeeccC-CCCCeeee-EEEEe--ecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCC
Q 005439 91 ----ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 91 ----~~~~~T~~~~~-~~~P~wne-~f~~~--~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
.+.++|++... +.||+|+| .|.|. +.+....|.|.|++.+ ..+||+-.+|+..+..|.. .+.|...
T Consensus 733 ~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GYr---hv~LRse 806 (1189)
T KOG1265|consen 733 TDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGYR---HVCLRSE 806 (1189)
T ss_pred chhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcce---eEEecCC
Confidence 34578888765 99999996 47776 4445667899999974 5799999999999988853 3556433
No 163
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.35 E-value=0.44 Score=44.74 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=68.7
Q ss_pred CcEEEEEECCee--EEEeeecc-CCCCCeeeeEEEEeecC---C------CCeEEEEEEeCCCCCC-eeeEEEecccccc
Q 005439 81 DPYVTVVVPQAT--VARTRVLK-NSQEPVWNEHFNIPLAH---P------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTI 147 (696)
Q Consensus 81 dpyv~v~~~~~~--~~~T~~~~-~~~~P~wne~f~~~~~~---~------~~~l~i~v~d~~~~~~-~~iG~~~i~l~~l 147 (696)
-.||+...+... ..+|.... ....-.|||.|.+.+.- . ...++|.|+....-+. ..+|++.|.|.++
T Consensus 25 ~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 25 KVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh
Confidence 345555555433 23444433 35667999999988442 1 2347888888754443 5999999999999
Q ss_pred cC--CceeEEEEEccCCCCCCCCCCceEEEEEEEecCCCCCc
Q 005439 148 AT--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL 187 (696)
Q Consensus 148 ~~--g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~p~ 187 (696)
.. .+....-++|... ......|.+++.+.+...++.
T Consensus 105 ~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 105 ANEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD 142 (143)
T ss_pred hCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence 86 3556666777332 245789999999988876654
No 164
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.27 E-value=0.084 Score=54.32 Aligned_cols=50 Identities=30% Similarity=0.261 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD 307 (696)
+...+.+.+.|++|+++|+|..|. + .-..|.+.|++|++|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~---~--------------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP---E--------------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G---G--------------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH---H--------------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 467889999999999999999771 1 0258999999999999999999966
No 165
>PLN03008 Phospholipase D delta
Probab=94.60 E-value=0.074 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=42.4
Q ss_pred eecCCCCCCCc-cchHHHHHHHHHhccceEEEEEEEEeeceeeeec-CCCCCCCCCchhHHHHHHHHhh--cCCEEEEEE
Q 005439 230 IPLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIRE-QTRPLPRGGDLTLGELLKYKSE--EGVRVLLLV 305 (696)
Q Consensus 230 ~~l~~g~~y~~-~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~-~~~~~~~g~~~~l~~lL~~aA~--rGV~VriLv 305 (696)
..|..|+...- ..+..+.++||++||+.|||+-=-|-...+.... .......-....|...|.+|.+ ++-+|+|++
T Consensus 554 ~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 554 QHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 34555554433 4567899999999999999974322221111100 0000000012456666666655 678888887
No 166
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.59 E-value=0.049 Score=61.38 Aligned_cols=69 Identities=29% Similarity=0.471 Sum_probs=55.3
Q ss_pred CCcEEEEEEC---C--eeEEEeeeccCCCCCeeeeEEEEeecC-----CCCeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~---~--~~~~~T~~~~~~~~P~wne~f~~~~~~-----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
+|||..+.-- + ....+|.+++++.+|.|-+ |.+.+.. +...+.+.++|.+..+ +++||++..++..+.
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 8999988752 1 4567999999999999984 5555433 3467899999999988 599999999998886
Q ss_pred C
Q 005439 149 T 149 (696)
Q Consensus 149 ~ 149 (696)
.
T Consensus 236 ~ 236 (529)
T KOG1327|consen 236 E 236 (529)
T ss_pred c
Confidence 3
No 167
>PLN02352 phospholipase D epsilon
Probab=94.39 E-value=0.13 Score=60.66 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCC-CCCCCCchhHHHHHHHHhh--cCCEEEEEE
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTR-PLPRGGDLTLGELLKYKSE--EGVRVLLLV 305 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~-~~~~g~~~~l~~lL~~aA~--rGV~VriLv 305 (696)
.....+.++||++||++|||+.=-|-...+....+.. ....-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 6789999999999999999974323211111111100 0000012467777777766 577888887
No 168
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.09 E-value=0.59 Score=45.90 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=95.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
+...++|...|+.|++...+..++-. .| -.-+.+.|..+..+||++|||- +..-++
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~--------------sG-~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE--------------SG-LSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC--------------cc-HHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 46789999999999999988877653 12 3578899999999999999996 443221
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
+.....++.+.-.+|++++.. .+ ...+|-|-.+.-.. ....|++|+.||+++-.-.
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~-~~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVST-IG--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEe-cC--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 223445566666668877421 11 23567777765332 1137999999999964321
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCce-eeeeeEeChHHHHHHHHHHHHHH
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR 457 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWh-Dv~~~v~Gpav~dl~~~F~qrWn 457 (696)
. ..|- -+.-.-.|..|..+...|...|.
T Consensus 150 n-----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 N-----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred C-----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1121 23334468899999999999997
No 169
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=93.97 E-value=0.087 Score=48.03 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=33.6
Q ss_pred HHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCC
Q 005439 567 IQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMW 630 (696)
Q Consensus 567 l~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~ 630 (696)
+++|.+|++.|+|..+||... .+..+|..+ +.+|++|.|++-..
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~ 45 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSN 45 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECG
T ss_pred HHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCC
Confidence 679999999999999999433 567777775 55889999999954
No 170
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.78 E-value=1.3 Score=42.74 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCcEEEEEE--CCeeE---EEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-----CeeeEEEecccc
Q 005439 80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (696)
Q Consensus 80 ~dpyv~v~~--~~~~~---~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-----~~~iG~~~i~l~ 145 (696)
+|-||++.+ ++... ..|+.+.. .++.|||-.+|++.-. ...|.|+||+..... ...+|.+.++|.
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 578888865 44221 23443333 6799999999986653 356899999865321 256888888886
Q ss_pred cc
Q 005439 146 TI 147 (696)
Q Consensus 146 ~l 147 (696)
+.
T Consensus 105 d~ 106 (158)
T cd08398 105 DY 106 (158)
T ss_pred CC
Confidence 53
No 171
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=93.61 E-value=0.67 Score=44.48 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=70.6
Q ss_pred cEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCC--------------CeEEEEEEeCCCCC-CeeeEEEeccccc
Q 005439 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPAHT 146 (696)
Q Consensus 82 pyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~--------------~~l~i~v~d~~~~~-~~~iG~~~i~l~~ 146 (696)
..+-+.+.+++ ++|+.+..+.+|.|+|.|.|++.... ..|.+.|...|..+ ..++|...+....
T Consensus 36 ~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 36 FTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 34444456655 89999999999999999999987642 34677777777766 5899999998877
Q ss_pred ccCCcee--EEEEEccCCCCCCCCCCceEEEEEEEecCC
Q 005439 147 IATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD 183 (696)
Q Consensus 147 l~~g~~~--~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~ 183 (696)
+...... ..-+.|.+......-+.|-|.+++...|.-
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6533222 233444333222223689999999998864
No 172
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.89 E-value=0.29 Score=51.27 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=78.9
Q ss_pred ceeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC
Q 005439 10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP 89 (696)
Q Consensus 10 ~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~ 89 (696)
..+.-+.|.|.+.++.+|+|.-.. +.++.+.+.||.++++
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p----------------------------------------~~kglt~~~ycVle~d 83 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTP----------------------------------------QQKGLTVCFYCVLEPD 83 (442)
T ss_pred eeeecccceEEEEEecccccccCh----------------------------------------hccCceeeeeeeeeec
Confidence 344567899999999999997321 1223347899999999
Q ss_pred CeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 005439 90 QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (696)
Q Consensus 90 ~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (696)
.+...+|.+.....-=.|.|+|.+.+... +.+.+-|+.++... +++.-...+.+..+..- .-++-+-+. .+
T Consensus 84 rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RHKLC~~g~l~~~~v~rq-spd~~~Al~------le 155 (442)
T KOG1452|consen 84 RQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQRRHKLCHLGLLEAFVVDRQ-SPDRVVALY------LE 155 (442)
T ss_pred ccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchhhccccccchhhhhhhhhc-CCcceeeee------cc
Confidence 88878888877776778999999987643 35566677766543 45433334444433321 112222221 14
Q ss_pred CCceEEEEEEEec
Q 005439 169 PGASIQLELKFTP 181 (696)
Q Consensus 169 ~~g~i~l~l~~~~ 181 (696)
++|++-+++.+..
T Consensus 156 Prgq~~~r~~~~D 168 (442)
T KOG1452|consen 156 PRGQPPLRLPLAD 168 (442)
T ss_pred cCCCCceecccCC
Confidence 5777777776543
No 173
>PLN02270 phospholipase D alpha
Probab=92.76 E-value=0.36 Score=57.32 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHhccceEEEEEEEE-eeceeeeecCCCCCCCC----CchhHHHHHHHHhh--cCCEEEEEE
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRG----GDLTLGELLKYKSE--EGVRVLLLV 305 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~-~p~~~L~r~~~~~~~~g----~~~~l~~lL~~aA~--rGV~VriLv 305 (696)
++...+.++||++|+++|||+.=-| +..+.--.++-.+...| .+..|...|.+|.+ ++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 6788999999999999999963222 22110000000000011 02455566666655 688999987
No 174
>PF13918 PLDc_3: PLD-like domain
Probab=92.20 E-value=1.5 Score=43.08 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=41.1
Q ss_pred HHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCC
Q 005439 564 TAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDP 635 (696)
Q Consensus 564 ~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~ 635 (696)
+|.++.|..|++||||+===++|...- .....-+- .|=.+|.+|+ =.|||+|++++..|..-++
T Consensus 85 dAIl~~I~~A~~fI~IsVMdY~P~~~~---~~~~~YWP----~ID~ALR~AA-~~R~V~VRlLIS~W~ht~p 148 (177)
T PF13918_consen 85 DAILSVIDSAKKFIYISVMDYLPTSRY---SKPNRYWP----VIDDALRRAA-IERGVKVRLLISCWKHTDP 148 (177)
T ss_pred HHHHHHHHhHhheEEEEEeecCCeeec---CCCCCcch----hHHHHHHHHH-HHcCCeEEEEEeecCCCCh
Confidence 699999999999999986656654210 00000111 4455665553 2469999999998864333
No 175
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=92.04 E-value=0.49 Score=56.24 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred ccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 367 HqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
|-|++|||++ .+.+|+.||.+.-.+.
T Consensus 703 HsK~mIvDD~--------~vIIGSANINqRSm~G 728 (887)
T KOG1329|consen 703 HSKLMIVDDE--------YVIIGSANINQRSMLG 728 (887)
T ss_pred eeeeEEecCC--------EEEEeecccchhhccC
Confidence 9999999999 9999999999844443
No 176
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=91.11 E-value=1 Score=44.17 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCcEEEEEE--CCee---EEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCC
Q 005439 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDD 130 (696)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~ 130 (696)
.+-||++.+ ++.. ...|+.+..+..+.|||.+.|++.-. ...|.|+||+..
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 567888765 4422 23555555567899999999986542 355899999854
No 177
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.56 E-value=1.5 Score=38.13 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=62.2
Q ss_pred cCCCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEE
Q 005439 78 ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWY 157 (696)
Q Consensus 78 ~~~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~ 157 (696)
++.+..+.+.+++..++.|.-... .+..|+++|+|.+.. ...|+|.|+-.|. ..+.|-..+.|.+...+ .-.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~ 78 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQL 78 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhccc----cee
Confidence 347788999999988888876544 578899999999975 4588999987654 34556666777763221 122
Q ss_pred EccCCCCCCCCCCceEEEEEEE
Q 005439 158 DIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
++ .+.|.+..++.|
T Consensus 79 ~l--------epqg~l~~ev~f 92 (98)
T cd08687 79 DM--------EPQLCLVAELTF 92 (98)
T ss_pred cc--------ccccEEEEEEEe
Confidence 33 578999999988
No 178
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.92 E-value=2.2 Score=41.76 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=58.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~~ 92 (696)
+...+.|+|..+.+++....... .|-||++.+ ++..
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~------------------------------------------~~~~v~~~l~~g~~~ 43 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF------------------------------------------EDFYLSCSLYHGGRL 43 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc------------------------------------------ccEEEEEEEEECCEE
Confidence 45678899999999985432111 678888866 4422
Q ss_pred E---EEeeecc--C--CCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC----------CeeeEEEecccccc
Q 005439 93 V---ARTRVLK--N--SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQIIGTAAIPAHTI 147 (696)
Q Consensus 93 ~---~~T~~~~--~--~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~----------~~~iG~~~i~l~~l 147 (696)
. ..|+... + ...+.|||...|++.-. +..|.|++|+....+ +..||.+.++|-+.
T Consensus 44 L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 44 LCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred CcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 1 2443221 1 34678999999986542 356899999865432 46888888887653
No 179
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=89.63 E-value=1.9 Score=41.35 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCcEEEEEE--CCe---eEEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC---CeeeEEEecccccc
Q 005439 80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI 147 (696)
Q Consensus 80 ~dpyv~v~~--~~~---~~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l 147 (696)
.+-||++.+ ++. ....|+....+.++.|||..+|++.-. ...|.|+||+.+..+ ...||.+.++|-+.
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567777765 332 222444444347899999999986542 356899999876543 58999999998764
Q ss_pred c
Q 005439 148 A 148 (696)
Q Consensus 148 ~ 148 (696)
.
T Consensus 108 ~ 108 (156)
T cd08380 108 K 108 (156)
T ss_pred c
Confidence 3
No 180
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=89.39 E-value=1.5 Score=42.89 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=62.4
Q ss_pred ccccccCccCCCcEEEEEECCeeEEEeeeccC--CCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEecccccc
Q 005439 70 KIIRKSKIITSDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTI 147 (696)
Q Consensus 70 ~~~~~~~~~~~dpyv~v~~~~~~~~~T~~~~~--~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l 147 (696)
+..+........-|+++.++++.+.+|+...- ...-.+||.|.+.+...-+.|.++||......+..|+++.||+-..
T Consensus 27 E~~RR~~~~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 27 EQNRRQRVQKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGS 106 (168)
T ss_pred HhhhHHHhhheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence 33344445557899999999988888877654 3445678999999988888999999999887799999999998644
Q ss_pred c
Q 005439 148 A 148 (696)
Q Consensus 148 ~ 148 (696)
.
T Consensus 107 ~ 107 (168)
T PF15625_consen 107 T 107 (168)
T ss_pred c
Confidence 3
No 181
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=89.38 E-value=1.4 Score=50.77 Aligned_cols=97 Identities=23% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCCccchHHHHHHHHHhccc-----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCc
Q 005439 237 LYKPGTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311 (696)
Q Consensus 237 ~y~~~~~f~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs 311 (696)
.|.|-+-|+.+.+-|++|-. .|-++ |-|-. ...++.++|++||+.|-+|-+|| +.
T Consensus 347 lhHPYeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~-------~dSpIV~ALi~AA~nGKqVtvlV--EL-- 406 (696)
T COG0855 347 LHHPYESFEPVVEFLRQAAADPDVLAIKQT---------LYRTS-------KDSPIVRALIDAAENGKQVTVLV--EL-- 406 (696)
T ss_pred EECchhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecC-------CCCHHHHHHHHHHHcCCeEEEEE--EE--
Confidence 34445678889999999742 22223 33422 24799999999999999999998 11
Q ss_pred cCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCC
Q 005439 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ 376 (696)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~ 376 (696)
+. .+=...+-.+.+.|+.+||||.+ ..+ .+--|-|+++|=-+
T Consensus 407 ------kA-RFDEE~NI~WAk~LE~AGvhVvy--G~~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 407 ------KA-RFDEEANIHWAKRLERAGVHVVY--GVV--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred ------hh-hcChhhhhHHHHHHHhCCcEEEe--ccc--------------ceeeeeeEEEEEEe
Confidence 10 11111123467789999999985 222 13449999998543
No 182
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=88.90 E-value=1.9 Score=46.48 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=77.5
Q ss_pred chHHHHHHHHHhcc-----ceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccC
Q 005439 242 TCWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG 316 (696)
Q Consensus 242 ~~f~~l~~aI~~Ak-----~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~ 316 (696)
+-|..+.+-|++|- .+|.|+-| |-. ....+.++|++||+.|=+|-++| .--.-
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLY---------R~a-------~~S~iv~aLi~AA~nGK~Vtv~v-ELkAR----- 75 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLY---------RVA-------SNSPIVNALIEAAENGKQVTVLV-ELKAR----- 75 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEES---------SS--------TT-HHHHHHHHHHHTT-EEEEEE-STTSS-----
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEE---------ecC-------CCCHHHHHHHHHHHcCCEEEEEE-EEecc-----
Confidence 34667777788773 56766655 322 23799999999999999999998 21110
Q ss_pred CCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCc
Q 005439 317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (696)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~ 396 (696)
+=...+-.+.+.|+++||+|.+ ..|. +--|-|+++|=-+.++ .-+..+++|-=|....
T Consensus 76 -----FDEe~Ni~Wa~~Le~aGv~Viy--G~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~ 133 (352)
T PF13090_consen 76 -----FDEENNIHWAKRLEEAGVHVIY--GVPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK 133 (352)
T ss_dssp -----STTCCCCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SSTT
T ss_pred -----ccHHHHhHHHhhHHhcCeEEEc--CCCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc
Confidence 1011112356778999999985 2222 2339999999543111 1233566553333221
Q ss_pred cCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHH
Q 005439 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR 455 (696)
Q Consensus 397 R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qr 455 (696)
+ ..-+-|+.+.-.-| .+.|+...|..-
T Consensus 134 -------------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 134 -------------------------------T-ARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp -------------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred -------------------------------c-hhheecceeecCCHHHHHHHHHHHHHH
Confidence 1 12356888887776 788999888554
No 183
>PLN02866 phospholipase D
Probab=87.39 E-value=1.3 Score=54.14 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEee
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP 628 (696)
.....|++++|.+||++|||+.=.|-|....+.+ ..-.++..|...|.++ +++||+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-----~~D~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-----FHDHESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-----CCCchHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 6688999999999999999954333222111000 0011345677777766 678999999854
No 184
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=86.78 E-value=2.7 Score=40.68 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=50.8
Q ss_pred CCCcEEEEEE--CCee---EEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccc
Q 005439 79 TSDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (696)
Q Consensus 79 ~~dpyv~v~~--~~~~---~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l 147 (696)
.+|-||++.+ ++.. ...|+.+.-+..+.|||-.+|++... ...|.|+||+.+..+ ...+|.+.++|.+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4788999976 3322 22555555577789999999997653 356899999987654 67899999988754
No 185
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.77 E-value=6.7 Score=36.96 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=45.9
Q ss_pred CcEEEEEE--CCe----eEEEeeeccCC-CCCeeeeEEEEeecC----CCCeEEEEEEeCCCCC-C----eeeEEEeccc
Q 005439 81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-A----QIIGTAAIPA 144 (696)
Q Consensus 81 dpyv~v~~--~~~----~~~~T~~~~~~-~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~~-~----~~iG~~~i~l 144 (696)
+.||++.+ ++. ....|+...-+ ..+.|||...|++.- ....|.|+|+..+... . ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 35666665 442 33366666655 899999999998654 2456899999876655 3 6999999998
Q ss_pred ccc
Q 005439 145 HTI 147 (696)
Q Consensus 145 ~~l 147 (696)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 776
No 186
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=84.14 E-value=1.5 Score=47.55 Aligned_cols=127 Identities=18% Similarity=0.156 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhh--cCCEEEEEEeCCC-CccCccCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSE--EGVRVLLLVWDDK-TSHDKLGV 317 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~--rGV~VriLvwD~~-gs~~~~~~ 317 (696)
.+||+.+...|.+||+.|+++.- ||- . .+..|.+-|..+.+ .-.+|.||+ |.. |+...+.-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasL------YlG---~------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASL------YLG---K------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeee------ccc---h------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 68999999999999999999854 321 1 13678888888877 578999997 876 22211110
Q ss_pred CCCCcccCChHHHHhhhcCCCcEEEe--cCCCCCCccchhhcc-ccc---ccccCccceEEecCCCCCCCcceEEEEccc
Q 005439 318 KTPGVMATHDEETKKFFKHSSVNCVL--APRYASSKLSYFKQQ-IVG---TIFTHHQKCVLVDTQASGNNRKITAFIGGI 391 (696)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~~~--~~~~p~~~~~~~~~~-~~~---~~~rhHqK~vVID~~~~~~~~~~vAfvGG~ 391 (696)
.+ +.....-.+++.+ .|.+.+ -|.+. .+.+.. +.+ ...-.|-|+.-+|++ ..+-|.
T Consensus 102 ~s---~llp~~l~kkf~e--~vd~~lyhtp~Lr----g~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGa 163 (469)
T KOG3964|consen 102 CS---ALLPVWLGKKFPE--RVDESLYHTPFLR----GLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGA 163 (469)
T ss_pred ch---hhchHHHhhhhhh--hhceeeecChhhh----hhhhhcCchhhccccchhhhhhhcccHh---------hhcccc
Confidence 00 0000011122222 333332 11110 011100 011 124679999999995 478899
Q ss_pred ccCCccCCCC
Q 005439 392 DLCDGRYDTP 401 (696)
Q Consensus 392 dl~~~R~Dt~ 401 (696)
|++.+++.+.
T Consensus 164 nls~dyfTNR 173 (469)
T KOG3964|consen 164 NLSNDYFTNR 173 (469)
T ss_pred cchhhhhccc
Confidence 9999766543
No 187
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=82.63 E-value=11 Score=37.10 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred cEEEEEE--CCee--EEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC--CeeeEEEecccccccCCc
Q 005439 82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGE 151 (696)
Q Consensus 82 pyv~v~~--~~~~--~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~--~~~iG~~~i~l~~l~~g~ 151 (696)
-||++.+ ++.. ..+|.....+.+|.|||-..|++.-. ...|.|+||+....+ ....|.- +...-....
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~ 109 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH 109 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence 5666644 3321 12555555577899999999986653 356899999863321 1122211 111111112
Q ss_pred eeEEEEEc--cCCCCCCCCCCceEEEEEEEecCCCC
Q 005439 152 LISRWYDI--IAPSGSPPKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 152 ~~~~w~~l--~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (696)
..-.|..+ ++..+ .-.+|+..|.++-.|...+
T Consensus 110 ~~l~wvn~~LFD~~~--~Lr~G~~~L~~W~~~~~~~ 143 (178)
T cd08399 110 QLLYYVNLLLIDHRF--LLRTGEYVLHMWQISGKGE 143 (178)
T ss_pred ceEEEEEEEEEcCCC--ceecCCEEEEEecCCCccc
Confidence 23345433 33222 2247888888887665443
No 188
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.06 E-value=12 Score=37.30 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=39.5
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC---CeeeEEEeccc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA 144 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~---~~~iG~~~i~l 144 (696)
...++|-|.....+|.|+|++.+.++.. ...|.|++++..... ...+|-+.+||
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 3457899999999999999999999874 455778776643321 25677777766
No 189
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.13 E-value=15 Score=36.63 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=40.8
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCC--C---CeeeEEEecccc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G---AQIIGTAAIPAH 145 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~--~---~~~iG~~~i~l~ 145 (696)
...++|-|.....+|.|+|++.+.++.. ...|.+++++.... + ...+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4457899999999999999999998874 45688888765422 1 356777777763
No 190
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.39 E-value=18 Score=32.58 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=50.9
Q ss_pred EEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC--------CCeEEEEEEeCCCCCCeeeEEEeccccccc--CCce
Q 005439 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIA--TGEL 152 (696)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~--~g~~ 152 (696)
||++.+-.-....|.++. ..+|.+|-+-.+.+... ...+.|+++..-......+|.+.|++..+. .++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554445777776 78999998877777664 356888888765333689999999999886 3435
Q ss_pred eEEEEEccCCCCCCCCCCceEEEEEEEe
Q 005439 153 ISRWYDIIAPSGSPPKPGASIQLELKFT 180 (696)
Q Consensus 153 ~~~w~~l~~~~~~~~~~~g~i~l~l~~~ 180 (696)
+..-..+.+..++ .-|.|...++..
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEec
Confidence 6666777555543 678888887754
No 191
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.29 E-value=8 Score=38.16 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=32.8
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC----CeeeEEEeccccc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG----AQIIGTAAIPAHT 146 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~----~~~iG~~~i~l~~ 146 (696)
..+.|.|..++.+|.|+|+|.+.++.+. ..|.|++++...-. ...+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4468888888999999999999998764 45888888765432 2578888887765
No 192
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.57 E-value=3.2 Score=48.33 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccC-CceeEEEE
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY 157 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~-g~~~~~w~ 157 (696)
.+||+.|.+.-.....+.+.+.+..|.|+|+|.+.+. ....+.|.|+...... +.+...+.+-.+++.. ......|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 7999999997755556666778999999999999954 4556778888765443 3333333333333332 22345688
Q ss_pred EccCCCCCCCCCCceEEEEEEEecCCC
Q 005439 158 DIIAPSGSPPKPGASIQLELKFTPCDK 184 (696)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (696)
.+ ++.|++.+.+.+.-...
T Consensus 107 ~~--------~~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LI--------EELGTLLKPAALTGTLE 125 (694)
T ss_pred cc--------ccccceeeeecccCcCC
Confidence 76 34677777777665444
No 193
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=71.45 E-value=6.7 Score=40.27 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeC
Q 005439 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (696)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~ 629 (696)
...|.+-..++|++|++.|||..+.= . -..+...|.+| .++||+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~---~---------------l~~l~~~L~~a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPE---F---------------LEELRDELEEA--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GG---G---------------HHHHHHHHHHH--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHH---H---------------HHHHHHHHHHH--HHCCCEEEEEEeC
Confidence 47899999999999999999986421 0 13666777777 4589999999987
No 194
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=65.43 E-value=16 Score=43.87 Aligned_cols=98 Identities=17% Similarity=0.341 Sum_probs=55.6
Q ss_pred CCcEEEEEECC----eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCC----------CCC-CeeeEEEeccc
Q 005439 80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD----------VFG-AQIIGTAAIPA 144 (696)
Q Consensus 80 ~dpyv~v~~~~----~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~----------~~~-~~~iG~~~i~l 144 (696)
..-||+..++. ..+++|+++.+|..|.||++|.+++-... ...+...+++ .+. +...|+..+.+
T Consensus 775 ~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sq-S~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l 853 (1112)
T KOG4269|consen 775 RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQ-SSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKL 853 (1112)
T ss_pred cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhcc-ccchhhhcccchHHHhhhccchhhccccccccccc
Confidence 45677777642 45579999999999999999999876532 2223332221 111 34555555555
Q ss_pred ccccCCceeEEEEEccCCCCCCCCCCceEEEEEEEecCCCC
Q 005439 145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 145 ~~l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~ 185 (696)
...... ...|+.-... -....+...|.|.+....
T Consensus 854 ~~~~~~--d~d~~t~v~~-----~n~~~ve~~v~~ssss~S 887 (1112)
T KOG4269|consen 854 DPQPHH--DADWYTQVID-----MNGIVVETSVKFSSSSTS 887 (1112)
T ss_pred Cccccc--cccCccChhh-----hcCcceeeeEEecccccc
Confidence 432211 2235432111 124456777888776543
No 195
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=62.23 E-value=49 Score=29.13 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCcEEEEEE--CCee---EEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeC
Q 005439 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (696)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~ 129 (696)
++-||++.+ ++.. ...|+.+.-...+.|||-..|++.-. ...|.|++|+.
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 478888876 4422 12455444466689999999986543 34588999874
No 196
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=50.62 E-value=39 Score=33.35 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=31.3
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDD 130 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~ 130 (696)
..+.|.|...+.+|.|+|++.+.++... ..|.|+.++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 4578899999999999999999998753 45778877643
No 197
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.60 E-value=44 Score=32.78 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=35.7
Q ss_pred EEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCC-----C-CeeeEEEeccccc
Q 005439 94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF-----G-AQIIGTAAIPAHT 146 (696)
Q Consensus 94 ~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~-----~-~~~iG~~~i~l~~ 146 (696)
++|-+..+ .+|.|+|+|.+.++.. ...|.|++++...- . ...+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444445 8999999999999764 34588888875422 1 4667777777653
No 198
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=49.16 E-value=19 Score=40.03 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=37.0
Q ss_pred eeEEEeccccc-ccCCceeEEEEEccCCCCCCCCCCceEEEEEEEecCCCCC
Q 005439 136 IIGTAAIPAHT-IATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186 (696)
Q Consensus 136 ~iG~~~i~l~~-l~~g~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~~p 186 (696)
++|.+.||++. +..+...+.||++.+...+. ...|.| ++++|...--.|
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~VLp 50 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENFVLP 50 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeeceecc
Confidence 48999999999 66788899999997765543 335666 788887765444
No 199
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=49.00 E-value=28 Score=38.22 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
...++.+...|.+||+.|+|.+-|.-.. ..+++.-|..|+.++..++|-|++--.-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 4577888999999999999999998653 2599999999999999999999986443
No 200
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=46.94 E-value=23 Score=40.51 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCC----C-CeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVF----G-AQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~----~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
....+|.++.+..||.|-+.|.++..... +.+++++++.+.. . .+++|++...+.++........-+-+ .+ +
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~-~~-~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL-KP-G 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc-cc-C
Confidence 34569999999999999999988866554 4578999887654 2 68999999999888744332222222 21 1
Q ss_pred CCCCCCceEEEEEEE
Q 005439 165 SPPKPGASIQLELKF 179 (696)
Q Consensus 165 ~~~~~~g~i~l~l~~ 179 (696)
.....|.|.+++.=
T Consensus 118 -~~~~~g~iti~aee 131 (529)
T KOG1327|consen 118 -KNAGSGTITISAEE 131 (529)
T ss_pred -ccCCcccEEEEeec
Confidence 12346676666653
No 201
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=45.07 E-value=38 Score=35.89 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeC
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~ 629 (696)
.+|.+....+|++|++-|=|.--=|.-- .|...|..|. .+|+|-|||+|=.
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa-~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAA-NKRGVPVYILLDE 183 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHH-HhcCCcEEEEech
Confidence 5799999999999999999999888643 6777888884 3789999999973
No 202
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=44.66 E-value=65 Score=32.03 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=31.6
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDD 130 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~ 130 (696)
..+.|.|...+.+|.|+|++.+.++... ..|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 4578899999999999999999988753 45788888754
No 203
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=43.15 E-value=2.6e+02 Score=31.31 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=62.9
Q ss_pred CCcEEEEEECCeeEEEeeec--cC-CCCC-ee---eeEEEEe------ecCC------CCeEEEEEEeCCC-------CC
Q 005439 80 SDPYVTVVVPQATVARTRVL--KN-SQEP-VW---NEHFNIP------LAHP------LSNLEIQVKDDDV-------FG 133 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~--~~-~~~P-~w---ne~f~~~------~~~~------~~~l~i~v~d~~~-------~~ 133 (696)
+.+||+|.+.+-..+.+.+- .. +.+| .- -..|.+. +..+ ...|+|.||.-.. .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 57899999987443222221 11 1111 11 1345554 1111 1458999997432 23
Q ss_pred CeeeEEEeccccccc-CCc---eeEEEEEccCCCCC-CCCCCceEEEEEEEecCCCCCccccccCC
Q 005439 134 AQIIGTAAIPAHTIA-TGE---LISRWYDIIAPSGS-PPKPGASIQLELKFTPCDKNPLYRQGIAG 194 (696)
Q Consensus 134 ~~~iG~~~i~l~~l~-~g~---~~~~w~~l~~~~~~-~~~~~g~i~l~l~~~~~~~~p~~~~gi~~ 194 (696)
..+||++.|+|+--- .++ ...+|..|-+...+ ......+|+|.++..|. |-|.-.-++
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD---PRfVFQFdg 178 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD---PRFVFQFDG 178 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC---CeeEEEcCC
Confidence 589999999996221 233 35679999333221 22357899999997664 555554444
No 204
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=31.79 E-value=2.9e+02 Score=30.07 Aligned_cols=94 Identities=12% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCcEEEEEECCeeEEEeeec-cCCCCC-eeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEeccccc-c-cCCceeEE
Q 005439 80 SDPYVTVVVPQATVARTRVL-KNSQEP-VWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHT-I-ATGELISR 155 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~-~~~~~P-~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~-l-~~g~~~~~ 155 (696)
...|+++..+.... +|..+ .+..+- .-.|...+.+..-...|++.|+.....+...||.+.+.+.. + ...-+...
T Consensus 74 khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnk 152 (508)
T PTZ00447 74 KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNE 152 (508)
T ss_pred eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccc
Confidence 46788888887553 55333 222222 34466666666667789999999988889999999998864 2 23446778
Q ss_pred EEEccCCCCCCCCCCceEEEEEE
Q 005439 156 WYDIIAPSGSPPKPGASIQLELK 178 (696)
Q Consensus 156 w~~l~~~~~~~~~~~g~i~l~l~ 178 (696)
||.+. ..| +..++|.|++-
T Consensus 153 Wy~c~-kDG---q~~cRIqLSFh 171 (508)
T PTZ00447 153 WFVCF-KDG---QEICKVQMSFY 171 (508)
T ss_pred eEEEe-cCC---ceeeeEEEEeh
Confidence 99994 333 34677777663
No 205
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=28.66 E-value=4.6e+02 Score=23.95 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=39.3
Q ss_pred CCcEEEEEECCeeEEEeeeccCCCCCee-eeEEEEeecCC---CCeEEEEEEeCC--CCCCeeeEEEeccccccc
Q 005439 80 SDPYVTVVVPQATVARTRVLKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDD--VFGAQIIGTAAIPAHTIA 148 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~~~~~P~w-ne~f~~~~~~~---~~~l~i~v~d~~--~~~~~~iG~~~i~l~~l~ 148 (696)
+.||++|.-....+..|...... .... ...+.+.+..+ ...+.|.+++.+ ......+.++.+.-.-+.
T Consensus 25 c~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 25 CRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCCEEEEEEEEEGGGSB
T ss_pred EEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEeeeeee
Confidence 89999999888776433332221 1111 12233333321 245788888876 334677888877766555
No 206
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=27.65 E-value=95 Score=27.58 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=39.0
Q ss_pred ecCCCCCCCc--cchHHHHHHHHHhc----cceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEE
Q 005439 231 PLDGGKLYKP--GTCWEDICHAISEA----HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304 (696)
Q Consensus 231 ~l~~g~~y~~--~~~f~~l~~aI~~A----k~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriL 304 (696)
.-..|..|.+ .++|.-+++.+++- ...|-+..-.. |+ .... ...-..|.++|.+++++|.+|.|-
T Consensus 12 l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~----Yf-NTSS----sk~l~~i~~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 12 LEISGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFKLS----YF-NTSS----SKALMDIFDLLEDAAQKGGKVTVN 82 (99)
T ss_pred EEEecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEEEE----EE-ecHh----HHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3456677766 46788888777753 23343322111 11 1011 001146777888889999999998
Q ss_pred EeCC
Q 005439 305 VWDD 308 (696)
Q Consensus 305 vwD~ 308 (696)
|-.
T Consensus 83 -Wyy 85 (99)
T PF09345_consen 83 -WYY 85 (99)
T ss_pred -EEE
Confidence 643
No 207
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=27.45 E-value=2.5e+02 Score=32.75 Aligned_cols=93 Identities=16% Similarity=0.391 Sum_probs=59.4
Q ss_pred cEEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCC--C--CCeeeEEEecccccccCCceeEEEE
Q 005439 82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV--F--GAQIIGTAAIPAHTIATGELISRWY 157 (696)
Q Consensus 82 pyv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~--~--~~~~iG~~~i~l~~l~~g~~~~~w~ 157 (696)
.||++++.+.+. +|.-. ...-|.|.-.=.|...+|...+++.++.... + .|.-+|++.+.-. .......+|+
T Consensus 362 vyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkvklftestgvlaledkelgrvil~pt--pns~ks~ewh 437 (1218)
T KOG3543|consen 362 VYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWH 437 (1218)
T ss_pred EEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecC--CCCcCCccce
Confidence 799999988663 44432 3457999988788888888788888887643 2 2778898776432 2222334788
Q ss_pred EccCCCCCCCCCCceEEEEEEE
Q 005439 158 DIIAPSGSPPKPGASIQLELKF 179 (696)
Q Consensus 158 ~l~~~~~~~~~~~g~i~l~l~~ 179 (696)
.+.-+..+. ...-+|.|.++.
T Consensus 438 ~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 438 TMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred eeecCCCCc-CccceEEEEEec
Confidence 875443332 224556666554
No 208
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=26.22 E-value=1.1e+02 Score=31.46 Aligned_cols=58 Identities=22% Similarity=0.379 Sum_probs=37.5
Q ss_pred CccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCC-------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 005439 598 GADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD-------PKTNTVQEILFWQSQTMQMMYSVVAQELREMQV 667 (696)
Q Consensus 598 ~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~-------~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi 667 (696)
+.+.+|+.+++.++++++.+ .+|+|..|=|. +.+-+++ ..|+......+.+.|.+.|+
T Consensus 36 gtD~~ia~~~a~~~a~~~~~------~lv~P~i~yG~s~~h~~fpGTisl~------~~t~~~~l~di~~sl~~~Gf 100 (237)
T PF02633_consen 36 GTDTLIAEAVAERAAERLGE------ALVLPPIPYGCSPHHMGFPGTISLS------PETLIALLRDILRSLARHGF 100 (237)
T ss_dssp THHHHHHHHHHHHHHHHHTH------EEE---B--BB-GCCTTSTT-BBB-------HHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHCCc------EEEeCCCccccCcccCCCCCeEEeC------HHHHHHHHHHHHHHHHHcCC
Confidence 35788899999999988643 78889888442 3233444 67777888888888988886
No 209
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=49 Score=28.11 Aligned_cols=37 Identities=24% Similarity=0.726 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCC-----CCchHHHHHHHHHH
Q 005439 603 IPMELALKIASKIRANERFAVYVIIPMWPEGDP-----KTNTVQEILFWQSQ 649 (696)
Q Consensus 603 i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~-----~~~~~~~i~~~~~~ 649 (696)
|-.++..|+.-|++ +-.||||.. ....+|++|-||-+
T Consensus 10 mtPEiYQrL~~AvE----------lGKWPdG~~LtqeQke~clQaVmlwqar 51 (90)
T COG3139 10 MTPEIYQRLSTAVE----------LGKWPDGVALTQEQKENCLQAVMLWQAR 51 (90)
T ss_pred cCHHHHHHHHHHHH----------hcCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 33489999999953 568999964 23578999999877
No 210
>PF13289 SIR2_2: SIR2-like domain
Probab=21.72 E-value=3e+02 Score=24.92 Aligned_cols=65 Identities=18% Similarity=0.429 Sum_probs=38.0
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcC-C---EEEEEEeCCCCccCccCC
Q 005439 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG-V---RVLLLVWDDKTSHDKLGV 317 (696)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rG-V---~VriLvwD~~gs~~~~~~ 317 (696)
..|...+.++..++..|+| ||.+. | ..+..+|..+.+.. - ++++++.+..
T Consensus 74 ~~~~~~l~~~l~~~~~lfi-Gys~~-------D----------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~-------- 127 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFI-GYSFN-------D----------PDIRQLLRSALENSGKSRPRHYIVIPDPD-------- 127 (143)
T ss_pred HHHHHHHHHHHcCCCEEEE-EECCC-------C----------HHHHHHHHHHHHhccCCCccEEEEEcCCc--------
Confidence 3355666666677766655 99763 1 34666665555532 2 5777763332
Q ss_pred CCCCcccCChHHHHhhhcCCCcEE
Q 005439 318 KTPGVMATHDEETKKFFKHSSVNC 341 (696)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~ 341 (696)
.+...+++++.||++
T Consensus 128 ---------~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 ---------DENEREFLEKYGIEV 142 (143)
T ss_pred ---------hHHHHHHHHHcCCEE
Confidence 134466777788875
No 211
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.66 E-value=2.4e+02 Score=28.97 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCC---------
Q 005439 606 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDA----HPQ--------- 672 (696)
Q Consensus 606 ~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~~----~~~--------- 672 (696)
.+...|.++ +++.+++||++-+-.-....+ .. -...+.++|.++|+|. +||
T Consensus 172 ~i~~~i~~~---r~~~D~vIv~~HwG~e~~~~p-~~------------~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~ 235 (250)
T PF09587_consen 172 RIKEDIREA---RKKADVVIVSLHWGIEYENYP-TP------------EQRELARALIDAGADIIIGHHPHVIQPVEIYK 235 (250)
T ss_pred HHHHHHHHH---hcCCCEEEEEeccCCCCCCCC-CH------------HHHHHHHHHHHcCCCEEEeCCCCcccceEEEC
Confidence 455666655 268999999998832111111 11 2234667788888752 443
Q ss_pred CeEEEEecCCc
Q 005439 673 DYLSFYCLGKR 683 (696)
Q Consensus 673 ~Yi~f~~lr~~ 683 (696)
+-+-||+|+|.
T Consensus 236 ~~~I~YSLGNf 246 (250)
T PF09587_consen 236 GKPIFYSLGNF 246 (250)
T ss_pred CEEEEEeCccc
Confidence 23778888875
No 212
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.26 E-value=7.5e+02 Score=23.84 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=34.1
Q ss_pred EEeeeccC-----CCCCeeeeEEEEeecCCC----CeEEEEEEeCCCCC-CeeeEEEeccc
Q 005439 94 ARTRVLKN-----SQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVFG-AQIIGTAAIPA 144 (696)
Q Consensus 94 ~~T~~~~~-----~~~P~wne~f~~~~~~~~----~~l~i~v~d~~~~~-~~~iG~~~i~l 144 (696)
..|.+.+. ...-.||..|.+.+.... ..|.|+|+..|.++ +.+.|-..+.|
T Consensus 41 G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 41 GQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 45555433 344679988877765532 46899999999998 66666544443
Done!