Query 005439
Match_columns 696
No_of_seqs 398 out of 3085
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 01:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 99.9 8.2E-28 2.8E-32 272.3 17.3 158 241-461 65-225 (506)
2 3hsi_A Phosphatidylserine synt 99.9 1.2E-23 4.1E-28 234.1 16.2 268 209-631 24-309 (458)
3 2fk9_A Protein kinase C, ETA t 99.8 2.2E-19 7.6E-24 171.5 12.7 129 11-180 23-156 (157)
4 2dmh_A Myoferlin; beta-sandwic 99.8 4E-18 1.4E-22 159.2 15.5 125 15-185 5-137 (140)
5 1gmi_A Protein kinase C, epsil 99.8 2.4E-18 8E-23 160.3 13.9 130 13-182 2-134 (136)
6 3b7y_A E3 ubiquitin-protein li 99.8 3.9E-18 1.3E-22 161.8 15.4 124 15-181 18-153 (153)
7 3kwu_A MUNC13-1; calcium bindi 99.8 1.5E-17 5.2E-22 156.8 18.6 124 12-181 12-147 (148)
8 1wfj_A Putative elicitor-respo 99.8 2.1E-18 7.3E-23 160.2 11.9 125 14-185 7-134 (136)
9 2ep6_A MCTP2 protein; beta san 99.8 5.5E-18 1.9E-22 157.0 13.6 127 9-181 5-132 (133)
10 3m7f_B E3 ubiquitin-protein li 99.7 1.9E-17 6.5E-22 161.1 15.8 124 16-182 7-142 (176)
11 1rlw_A Phospholipase A2, CALB 99.7 3.5E-17 1.2E-21 149.8 13.1 118 16-181 2-125 (126)
12 2nq3_A Itchy homolog E3 ubiqui 99.7 8.3E-17 2.8E-21 156.4 13.0 127 13-184 32-164 (173)
13 3pyc_A E3 ubiquitin-protein li 99.7 3E-16 1E-20 145.1 14.7 120 17-179 5-131 (132)
14 1xdp_A Polyphosphate kinase; P 99.7 2.5E-16 8.4E-21 181.9 16.3 139 241-458 346-493 (687)
15 4ggj_A Mitochondrial cardiolip 99.7 7.1E-17 2.4E-21 160.0 9.6 135 241-461 45-179 (196)
16 2o8r_A Polyphosphate kinase; s 99.7 1.6E-16 5.3E-21 182.3 13.3 205 241-627 351-569 (705)
17 2b3r_A Phosphatidylinositol-4- 99.6 1.4E-15 4.8E-20 141.2 14.4 107 11-160 14-129 (134)
18 2r83_A Synaptotagmin-1; C2A-C2 99.6 3.6E-15 1.2E-19 155.6 17.1 128 15-184 17-150 (284)
19 1rsy_A Synaptotagmin I; calciu 99.6 1.6E-15 5.5E-20 143.7 12.9 104 15-160 40-149 (152)
20 3f04_A Synaptotagmin-1; C2A, c 99.6 1.6E-15 5.5E-20 142.0 12.0 103 15-159 32-140 (143)
21 3fdw_A Synaptotagmin-like prot 99.6 1.4E-15 4.8E-20 143.4 11.6 105 16-162 22-135 (148)
22 2q3x_A Regulating synaptic mem 99.6 2.8E-15 9.5E-20 145.2 13.3 107 13-161 26-139 (171)
23 1a25_A CALB, protein kinase C 99.6 2.6E-15 8.8E-20 141.8 12.7 106 13-161 27-139 (149)
24 3rdl_A Protein kinase C alpha 99.6 3.1E-15 1.1E-19 138.7 12.8 106 13-161 12-124 (137)
25 1rh8_A Piccolo protein; beta-s 99.6 1E-15 3.5E-20 143.0 9.0 107 12-160 13-137 (142)
26 2d8k_A Synaptotagmin VII; exoc 99.6 4.9E-15 1.7E-19 138.4 13.3 104 15-160 24-134 (141)
27 2z0u_A WW domain-containing pr 99.6 1.4E-15 4.9E-20 144.9 8.6 104 15-160 41-154 (155)
28 2bwq_A Regulating synaptic mem 99.6 5.7E-15 2E-19 135.5 12.3 101 16-159 17-128 (129)
29 1byr_A Protein (endonuclease); 99.6 7.3E-15 2.5E-19 139.2 12.4 135 241-460 13-149 (155)
30 3fbk_A RGS3, RGP3, regulator o 99.6 1.3E-14 4.6E-19 137.6 12.9 106 14-162 24-138 (153)
31 1v27_A Regulating synaptic mem 99.6 7.1E-15 2.4E-19 136.9 10.8 104 16-162 20-134 (141)
32 2chd_A Rabphilin-3A, exophilin 99.6 1.1E-14 3.7E-19 136.2 11.9 103 15-159 27-138 (142)
33 1wfm_A Synaptotagmin XIII; C2 99.6 1.4E-14 4.8E-19 135.1 12.0 82 80-161 44-132 (138)
34 3n5a_A Synaptotagmin-7; calciu 99.6 1.8E-14 6.2E-19 133.5 12.3 92 15-148 14-113 (138)
35 2dmg_A KIAA1228 protein; beta- 99.6 1.6E-14 5.4E-19 135.0 11.8 104 16-162 23-136 (142)
36 1ugk_A Synaptotagmin IV, KIAA1 99.5 2.6E-14 8.9E-19 133.0 12.6 105 15-161 20-133 (138)
37 1tjx_A Similar to synaptotagmi 99.5 2.8E-14 9.7E-19 136.1 13.0 104 15-160 23-146 (159)
38 2enp_A B/K protein; C2 type 1, 99.5 2E-14 7E-19 135.2 11.0 110 15-160 24-140 (147)
39 2cm5_A Rabphilin-3A; protein t 99.5 5.1E-14 1.8E-18 135.3 13.6 91 15-147 35-133 (166)
40 1w15_A Synaptotagmin IV; metal 99.5 9.5E-15 3.2E-19 138.4 7.9 102 15-160 28-137 (153)
41 4gel_A Mitochondrial cardiolip 99.5 1E-14 3.6E-19 146.6 8.1 151 241-461 57-211 (220)
42 1dqv_A Synaptotagmin III; beta 99.5 8E-14 2.7E-18 146.7 14.4 125 15-182 18-150 (296)
43 3l9b_A Otoferlin; C2-domain, b 99.5 1.5E-13 5.1E-18 127.0 12.1 102 80-184 37-143 (144)
44 2cjt_A UNC-13 homolog A, MUNC1 99.5 3.3E-13 1.1E-17 124.8 13.8 96 80-179 23-130 (131)
45 3jzy_A Intersectin 2; C2 domai 99.4 5.7E-13 2E-17 150.4 14.3 117 15-180 385-507 (510)
46 2cjs_A UNC-13 homolog A, MUNC1 99.4 2.7E-12 9.2E-17 123.7 14.1 99 80-182 32-142 (167)
47 3nsj_A Perforin-1; pore formin 99.4 2.6E-12 9E-17 145.1 15.3 110 16-182 393-505 (540)
48 3bxj_A RAS GTPase-activating p 99.4 5.3E-14 1.8E-18 158.0 1.1 129 11-186 5-162 (483)
49 1djx_A PLC-D1, phosphoinositid 99.4 3.2E-12 1.1E-16 147.3 14.3 122 15-180 495-623 (624)
50 1cjy_A CPLA2, protein (cytosol 99.3 3.1E-12 1.1E-16 148.9 11.6 103 15-159 16-124 (749)
51 2r83_A Synaptotagmin-1; C2A-C2 99.3 7.1E-12 2.4E-16 130.6 12.9 103 16-160 149-271 (284)
52 1dqv_A Synaptotagmin III; beta 99.2 4.8E-12 1.6E-16 133.1 4.9 104 16-162 151-262 (296)
53 3pfq_A PKC-B, PKC-beta, protei 99.0 1E-09 3.5E-14 128.2 12.7 107 13-162 168-281 (674)
54 3ohm_B 1-phosphatidylinositol- 98.9 3.2E-09 1.1E-13 125.6 11.4 95 80-181 742-845 (885)
55 3qr0_A Phospholipase C-beta (P 98.9 4.4E-09 1.5E-13 123.7 12.5 114 15-181 648-771 (816)
56 2zkm_X 1-phosphatidylinositol- 98.9 5.6E-09 1.9E-13 123.3 12.7 113 15-180 676-798 (799)
57 1yrk_A NPKC-delta, protein kin 98.9 2.8E-08 9.6E-13 89.2 14.2 89 80-180 27-124 (126)
58 2enj_A NPKC-theta, protein kin 98.8 2.4E-08 8.2E-13 90.8 12.1 91 80-182 32-131 (138)
59 3hsi_A Phosphatidylserine synt 98.8 3.3E-08 1.1E-12 109.9 12.4 149 241-461 257-421 (458)
60 1v0w_A Phospholipase D; hydrol 98.5 8.1E-07 2.8E-11 100.1 13.5 158 242-460 314-492 (506)
61 1byr_A Protein (endonuclease); 97.5 0.00021 7.2E-09 66.7 8.4 71 560-668 13-83 (155)
62 4ggj_A Mitochondrial cardiolip 97.1 0.0006 2.1E-08 66.8 6.1 49 560-628 45-93 (196)
63 2o8r_A Polyphosphate kinase; s 96.7 0.0032 1.1E-07 72.6 8.8 138 232-460 509-654 (705)
64 4gel_A Mitochondrial cardiolip 96.5 0.0022 7.4E-08 63.6 5.3 50 560-629 57-106 (220)
65 1xdp_A Polyphosphate kinase; P 96.1 0.0017 5.9E-08 75.1 2.4 49 564-631 350-403 (687)
66 3qph_A TRMB, A global transcri 93.9 0.04 1.4E-06 58.5 4.6 48 241-305 118-165 (342)
67 2f5t_X Archaeal transcriptiona 93.5 0.085 2.9E-06 52.9 5.8 51 241-308 9-59 (233)
68 3l4c_A Dedicator of cytokinesi 83.3 9 0.00031 37.6 11.4 40 92-131 77-119 (220)
69 3qph_A TRMB, A global transcri 77.4 2.5 8.5E-05 44.6 5.6 54 559-632 117-170 (342)
70 2yrb_A Protein fantom; beta sa 72.8 21 0.00073 33.0 9.9 97 83-181 45-150 (156)
71 2wxf_A Phosphatidylinositol-4, 70.4 20 0.00068 42.8 11.5 68 80-147 235-324 (940)
72 2f5t_X Archaeal transcriptiona 64.2 10 0.00035 37.6 6.3 53 559-631 8-60 (233)
73 3hhm_A Phosphatidylinositol-4, 62.1 32 0.0011 41.6 11.0 67 80-147 375-455 (1091)
74 1e7u_A Phosphatidylinositol 3- 44.7 80 0.0027 37.7 10.6 50 80-129 238-295 (961)
75 2y3a_A Phosphatidylinositol-4, 36.4 29 0.001 42.0 5.1 50 80-129 371-429 (1092)
76 2l82_A Designed protein OR32; 26.3 82 0.0028 27.0 4.8 45 285-343 90-134 (162)
77 3lub_A Putative creatinine ami 20.7 90 0.0031 31.1 4.7 63 599-668 42-112 (254)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.95 E-value=8.2e-28 Score=272.25 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHhccceEEEEEEEE-eeceeeeecCCCCCCCCCchhHHHHHHHHhhcC--CEEEEEEeCCCCccCccCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSV-FHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGV 317 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~-~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rG--V~VriLvwD~~gs~~~~~~ 317 (696)
+++|++|+++|++||++|+|++|++ .+ +. .| .+|.++|++||+|| |+||||+ |.+|+....
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~-------d~----~g--~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPN-------GA----FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCC-------HH----HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCC-------Ch----HH--HHHHHHHHHHHhCCCCcEEEEEE-eCccccccc--
Confidence 5789999999999999999999984 42 21 22 78999999999999 9999996 776543210
Q ss_pred CCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCcc
Q 005439 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 397 (696)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R 397 (696)
.......+.|+..|+++. ...|.....+.. ....+.+||+|++|||++ +||+||+||+.++
T Consensus 129 -------~~~~~~~~~L~~~g~~~~--~~~~~~~~~~~~--~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 129 -------VIPSKYRDELTAKLGKAA--ENITLNVASMTT--SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp -------CHHHHHHHHHHHHHGGGG--GGEEEEEEEECS--BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred -------cCCHHHHHHHHhccccee--ecCccccccccc--cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 012345555665444321 000000000000 001224999999999998 9999999998767
Q ss_pred CCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 005439 398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (696)
Q Consensus 398 ~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~ 461 (696)
|.+. ..+|||++++|+||+|.++.+.|.++|+....
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~ 225 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 225 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhcc
Confidence 7642 13899999999999999999999999997643
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.90 E-value=1.2e-23 Score=234.14 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=165.2
Q ss_pred ccCceeEEEEcccccCCCCCceecCCCCCCCccchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHH
Q 005439 209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG 288 (696)
Q Consensus 209 ~~gn~v~l~~dg~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~ 288 (696)
..+|.++++.+| +++|+++.++|++|+++|+|++|+|.+ +. .| ..|.
T Consensus 24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~----~g--~~l~ 70 (458)
T 3hsi_A 24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE----AG--QEIL 70 (458)
T ss_dssp CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH----HH--HHHH
T ss_pred ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEec-------Cc----HH--HHHH
Confidence 468999999998 689999999999999999999998853 21 23 7999
Q ss_pred HHHHHHhhc--CCEEEEEEeCCC-------CccCccCCCCCCcccCChHHHHhhhcCCC--cEEE--ecCCCCCCccchh
Q 005439 289 ELLKYKSEE--GVRVLLLVWDDK-------TSHDKLGVKTPGVMATHDEETKKFFKHSS--VNCV--LAPRYASSKLSYF 355 (696)
Q Consensus 289 ~lL~~aA~r--GV~VriLvwD~~-------gs~~~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~--~~~~~p~~~~~~~ 355 (696)
++|.+||+| ||+||||+ |.. |+... ..+......|.++| |++. +.. +|...
T Consensus 71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~----------~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~~---- 134 (458)
T 3hsi_A 71 DEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKS----------ATNADWYCEQRQTYQLPDDPNMFFG-VPINT---- 134 (458)
T ss_dssp HHHHHHHHHSTTCEEEEEE-ETTGGGSCCC---------------CCHHHHHHHHHHHHTCTTCCCCEEE-ECSSS----
T ss_pred HHHHHHHhcCCCCEEEEEE-ECccccccccccccc----------cccHHHHHHHHhhCCCceEeeeecC-Ccccc----
Confidence 999999999 99999996 883 33211 00133444454333 6554 321 23211
Q ss_pred hcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCcee
Q 005439 356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHD 435 (696)
Q Consensus 356 ~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhD 435 (696)
...+.++|+|++|||++ + ++||+||++.++... .....|+|
T Consensus 135 ----~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~drd 175 (458)
T 3hsi_A 135 ----REVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDRY 175 (458)
T ss_dssp ----SGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECCE
T ss_pred ----ccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcchh
Confidence 12456899999999997 8 556699999544321 11234888
Q ss_pred eeeeEeChHHHHHHHHHHH--HHHhhcccchhhhhhccccccccc--cccc-ccccccccCccccccCCCccccCCCCcc
Q 005439 436 LHCRLDGPAAYDVLINFEQ--RWRKATKLTELTFKFKRVSHWRDD--YLIK-IGRISWILSPELSLKTNGTTIVPRDDNV 510 (696)
Q Consensus 436 v~~~v~Gpav~dl~~~F~q--rWn~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 510 (696)
+.+.||.+.|....|++ .|+...-.. ++.. |..+ .+.. ...+...+.... .+ .++.
T Consensus 176 --~~i~g~~~~D~~~~~~~~~~~~g~~v~~-----l~~~--~~~~~~~~~~~~~~~~~~l~~~~---~~---~~~~---- 236 (458)
T 3hsi_A 176 --QKITHAELADSMVNFINDYLLDFSAVYP-----LDVT--NRPRTKEIRGNIRAYRKDLAQNG---EY---SLKS---- 236 (458)
T ss_dssp --EEEECHHHHHHHHHHHHHTTCCTTTCEE-----SSSS--CCCCGGGTHHHHHHHHHHHHHHC---CC---CCSS----
T ss_pred --hhhcCchHHHHHHHHHHhhhhcCccchh-----hHHH--hcccchhhHHHHHHHHHhhhhcc---cc---cccc----
Confidence 44899999999999954 465321110 0000 0000 0000 000000000000 00 0010
Q ss_pred cccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhccccccccCccchhHHHHHHHHHHHhccceEEEeeeeecccccC
Q 005439 511 VRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYA 590 (696)
Q Consensus 511 ~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~ 590 (696)
...+...+|+......+ ..+..+..+|+++|.+|+++|||+|+||+++.
T Consensus 237 ------~~~~~~~~~v~p~~~~~-----------------------~~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-- 285 (458)
T 3hsi_A 237 ------AVKLPNVLSVSPLFGLG-----------------------ASGNELNQVIEDLFLQVQKKLVICTPYFNFPR-- 285 (458)
T ss_dssp ------CBSSCSSCEEEEEEEES-----------------------SSSCHHHHHHHHHHHTCSSEEEEECSSSCCCH--
T ss_pred ------cCCCCceEEEecCCCCC-----------------------CchhHHHHHHHHHHHhcccEEEEEEeccCCCH--
Confidence 00111123443311001 01367999999999999999999999999973
Q ss_pred CCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 591 WPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 591 ~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
.+..+|..| +++||+|.||+|...
T Consensus 286 ---------------~~~~aL~~A--a~rGV~VrIi~~~~~ 309 (458)
T 3hsi_A 286 ---------------TLQHKIATL--LENGKRVEIIVGDKV 309 (458)
T ss_dssp ---------------HHHHHHHHH--HTTTCEEEEEEECGG
T ss_pred ---------------HHHHHHHHH--HHCCCeEEEEECCcc
Confidence 788888888 568999999999874
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=171.46 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=106.2
Q ss_pred eeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC
Q 005439 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (696)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (696)
++..++|.|.|+|++|++|+++|..+.++ +|. ...+.+||||++.+++
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~------------------------------~~~g~sDPYv~v~l~~ 70 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFK------------------------------KGHQLLDPYLTVSVDQ 70 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSS------------------------------SSCCCCCEEEEEEETT
T ss_pred hhccCccEEEEEEEEEECCCCcccccccc--ccc------------------------------cCCCCCCeEEEEEECC
Confidence 45689999999999999999877543210 110 0112489999999998
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCC----ceeEEEEEccCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSGS 165 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~l~~~~~~ 165 (696)
....+|++++++.||+|||+|.|.+.. ...|.|+|||++.++ +++||.+.|+|.++..+ ...+.||+|
T Consensus 71 ~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L------ 143 (157)
T 2fk9_A 71 VRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL------ 143 (157)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEEC------
T ss_pred EeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEEC------
Confidence 887899999999999999999999865 458999999999998 89999999999998855 678999999
Q ss_pred CCCCCceEEEEEEEe
Q 005439 166 PPKPGASIQLELKFT 180 (696)
Q Consensus 166 ~~~~~g~i~l~l~~~ 180 (696)
.+.|+|+|+++|.
T Consensus 144 --~~~G~i~l~l~~~ 156 (157)
T 2fk9_A 144 --EPEGKVFVVITLT 156 (157)
T ss_dssp --BSSCEEEEEEEEC
T ss_pred --CCCcEEEEEEEEE
Confidence 2479999999874
No 4
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=159.16 Aligned_cols=125 Identities=28% Similarity=0.478 Sum_probs=107.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
..|.|.|+|++|++|+.++. +. +||||++.+.+.. .
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~ 40 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K 40 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence 57899999999999998775 43 8999999998865 7
Q ss_pred EeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEE---ccCCCCCC
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP 166 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~---l~~~~~~~ 166 (696)
+|++++++.||+|||+|.|.+..+ ...|.|+|||++.++ +++||++.|++.++..+...+.|++ |....+.
T Consensus 41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~- 119 (140)
T 2dmh_A 41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ- 119 (140)
T ss_dssp ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC-
T ss_pred EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC-
Confidence 999999999999999999998753 467999999999997 8999999999999998888889988 6444332
Q ss_pred CCCCceEEEEEEEecCCCC
Q 005439 167 PKPGASIQLELKFTPCDKN 185 (696)
Q Consensus 167 ~~~~g~i~l~l~~~~~~~~ 185 (696)
...|+|+|+++|.|.+..
T Consensus 120 -~~~G~l~l~~~~~p~~~~ 137 (140)
T 2dmh_A 120 -DTGATIDLVIGYDPPSGP 137 (140)
T ss_dssp -EEEEEEEEEEEECCCBSS
T ss_pred -CCCCEEEEEEEEECCCCC
Confidence 346999999999997653
No 5
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.77 E-value=2.4e-18 Score=160.26 Aligned_cols=130 Identities=18% Similarity=0.411 Sum_probs=105.9
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (696)
.+++|.|.|+|++|++|+++|..+.+. + |. +.+...+||||++.+++..
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~--------------------g~--------~~~~~~~DPyv~v~l~~~~ 50 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---V--------------------GP--------RPQTFLLDPYIALNVDDSR 50 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----C--------------------CS--------SCCCCCCCEEEEEEETTEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---c--------------------cc--------ccCCcCcCcEEEEEECCeE
Confidence 357899999999999999876433200 0 00 0112348999999999887
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCC--ceeEEEEEccCCCCCCCCC
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP 169 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~l~~~~~~~~~~ 169 (696)
..+|++++++.||+|||+|.|.+... ..|.|+|||++.++ +++||.+.|++.++..+ ...+.|++| ++
T Consensus 51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L--------~~ 121 (136)
T 1gmi_A 51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------EP 121 (136)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------BS
T ss_pred eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc--------CC
Confidence 78999999999999999999998766 78999999999887 89999999999999863 346899998 34
Q ss_pred CceEEEEEEEecC
Q 005439 170 GASIQLELKFTPC 182 (696)
Q Consensus 170 ~g~i~l~l~~~~~ 182 (696)
.|+|+|+++|.+.
T Consensus 122 ~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 122 EGKVYVIIDLSGS 134 (136)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CeEEEEEEEEEec
Confidence 7999999999874
No 6
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.77 E-value=3.9e-18 Score=161.79 Aligned_cols=124 Identities=21% Similarity=0.373 Sum_probs=100.8
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 55 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG 55 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 45789999999999998775554 89999999963
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCce------eEEEEEccCC
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAP 162 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~l~~~ 162 (696)
....+|++++++.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|.++..+.. ...|++|...
T Consensus 56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~ 135 (153)
T 3b7y_A 56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135 (153)
T ss_dssp EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence 3568999999999999999999999888788999999999987 8999999999999976543 2589999433
Q ss_pred CCCCCCCCceEEEEEEEec
Q 005439 163 SGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 163 ~~~~~~~~g~i~l~l~~~~ 181 (696)
. ...+..|+|+|+++|.|
T Consensus 136 ~-~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 136 S-HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp S-TTCCCCSEEEEEEEECC
T ss_pred c-CCCCcceEEEEEEEEeC
Confidence 2 33356899999999987
No 7
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.76 E-value=1.5e-17 Score=156.77 Aligned_cols=124 Identities=23% Similarity=0.435 Sum_probs=104.6
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
+....|.|.|+|++|++|+.++..+. +||||++.+++.
T Consensus 12 ~~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~ 49 (148)
T 3kwu_A 12 TSKWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKT 49 (148)
T ss_dssp ---CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTE
T ss_pred ccccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCE
Confidence 34568999999999999998776554 899999999876
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCC-----------C-CeeeEEEecccccccCCceeEEEEEc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~-----------~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
. .+|++++++.||.|||+|.|.+..+...|.|+|||.+.+ + +++||++.|+|.++. .....|++|
T Consensus 50 ~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L 126 (148)
T 3kwu_A 50 K-KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNL 126 (148)
T ss_dssp E-EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEEC
T ss_pred E-EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEc
Confidence 5 699999999999999999999988888899999999985 4 899999999999983 456899999
Q ss_pred cCCCCCCCCCCceEEEEEEEec
Q 005439 160 IAPSGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 160 ~~~~~~~~~~~g~i~l~l~~~~ 181 (696)
. +.+......|+|+|+++|.-
T Consensus 127 ~-~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 127 D-KRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp B-CSSTTCCCCCEEEEEEEEEC
T ss_pred c-cCCCCCCCceEEEEEEEEEe
Confidence 4 33333456899999999863
No 8
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.76 E-value=2.1e-18 Score=160.18 Aligned_cols=125 Identities=24% Similarity=0.483 Sum_probs=108.9
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeE
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV 93 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~ 93 (696)
...|.|.|+|++|++|+.++..+. +||||++.+.+..
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~- 43 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD- 43 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-
T ss_pred CCcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-
Confidence 467999999999999998776554 8999999998866
Q ss_pred EEeeecc-CCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccc-cCCceeEEEEEccCCCCCCCCCC
Q 005439 94 ARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPG 170 (696)
Q Consensus 94 ~~T~~~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l-~~g~~~~~w~~l~~~~~~~~~~~ 170 (696)
.+|++++ ++.||+|||+|.|.+......|.|+|||++.++ +++||++.|+|.++ ..++....||+|. .. .+..
T Consensus 44 ~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~---~~~~ 119 (136)
T 1wfj_A 44 QKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KD---EEYK 119 (136)
T ss_dssp EECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ET---TEEE
T ss_pred ceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cC---CccC
Confidence 5999998 899999999999999987788999999999987 89999999999999 4566778999996 22 2468
Q ss_pred ceEEEEEEEecCCCC
Q 005439 171 ASIQLELKFTPCDKN 185 (696)
Q Consensus 171 g~i~l~l~~~~~~~~ 185 (696)
|+|+|+++|.|....
T Consensus 120 G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 120 GEIWVALSFKPSGPS 134 (136)
T ss_dssp EEEEEEEEEEECCSC
T ss_pred EEEEEEEEEEeCCCC
Confidence 999999999998653
No 9
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.75 E-value=5.5e-18 Score=156.96 Aligned_cols=127 Identities=24% Similarity=0.357 Sum_probs=108.5
Q ss_pred CceeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE
Q 005439 9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV 88 (696)
Q Consensus 9 ~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~ 88 (696)
+.......|.|.|+|++|++|+.++..+. +||||++.+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~ 42 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLEL 42 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEEEE
Confidence 34445578999999999999998775554 899999999
Q ss_pred CCeeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCC
Q 005439 89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (696)
Q Consensus 89 ~~~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~ 167 (696)
++.. .+|++++++.||+|||+|.|.+..+...|.|+|||++.++ +++||++.|++.++..+. ..|++|.....+ .
T Consensus 43 ~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~-~ 118 (133)
T 2ep6_A 43 GNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE-Q 118 (133)
T ss_dssp TTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT-S
T ss_pred CCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC-C
Confidence 8865 6999999999999999999999988888999999999997 899999999999998765 489999544332 3
Q ss_pred CCCceEEEEEEEec
Q 005439 168 KPGASIQLELKFTP 181 (696)
Q Consensus 168 ~~~g~i~l~l~~~~ 181 (696)
...|+|+|+++|..
T Consensus 119 ~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 119 AFKGVIYLEMDLIY 132 (133)
T ss_dssp CCSSEEEEEEEEEE
T ss_pred ccceEEEEEEEEEe
Confidence 57899999999864
No 10
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.74 E-value=1.9e-17 Score=161.08 Aligned_cols=124 Identities=21% Similarity=0.391 Sum_probs=98.7
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----- 90 (696)
.|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~ 44 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI 44 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence 5889999999999998776554 89999999964
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCcee-E-----EEEEccCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS 163 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~-~-----~w~~l~~~~ 163 (696)
..+.+|++++++.||+|||+|.|.+......|.|+|||.+.++ +++||.+.|+|..+..+... + .||+|. ..
T Consensus 45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~-~~ 123 (176)
T 3m7f_B 45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH-PR 123 (176)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECB-CS
T ss_pred ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcc-cc
Confidence 1567999999999999999999999987788999999999987 89999999999999865433 2 799994 33
Q ss_pred CCCCCCCceEEEEEEEecC
Q 005439 164 GSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 164 ~~~~~~~g~i~l~l~~~~~ 182 (696)
....+..|+|+|+++|.|.
T Consensus 124 ~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 124 SHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp STTCCCCSEEEEEEEECC-
T ss_pred CCCCccCEEEEEEEEEEeC
Confidence 3334578999999999997
No 11
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.72 E-value=3.5e-17 Score=149.82 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=98.4
Q ss_pred ccEEEEEEEEeeCCCCCC---CcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 005439 16 HGDLDLKIIRARRLPNMD---MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (696)
.|.|.|+|++|++|+.++ ..+ .+||||++.+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------------------~~dpyv~v~~~~~~ 39 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------------------TPDPYVELFISTTP 39 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHC------------------------------------------CCCEEEEEECTTST
T ss_pred CcEEEEEEEeeeCCCCCCccccCC------------------------------------------CCCCEEEEEEccCC
Confidence 478999999999999742 222 289999999975
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecC-CCCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCCCCCCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~-~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~ 169 (696)
..+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.+++++||++.|+|.++..|.....|++|. + ..
T Consensus 40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~-~-----~~ 113 (126)
T 1rlw_A 40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VT 113 (126)
T ss_dssp TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TE
T ss_pred CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcC-C-----Cc
Confidence 356799999999999999999999954 4567999999999988999999999999999999999999993 2 23
Q ss_pred CceEEEEEEEec
Q 005439 170 GASIQLELKFTP 181 (696)
Q Consensus 170 ~g~i~l~l~~~~ 181 (696)
.|+|+|++.-.|
T Consensus 114 ~g~i~~~le~~~ 125 (126)
T 1rlw_A 114 EMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEEeCC
Confidence 567777666444
No 12
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.70 E-value=8.3e-17 Score=156.37 Aligned_cols=127 Identities=18% Similarity=0.300 Sum_probs=103.2
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT 92 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~ 92 (696)
....++|.|+|++|++|++.+..+. +||||+|.+++ .
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~ 68 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-Q 68 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-E
T ss_pred cCCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-E
Confidence 4568899999999999994332222 89999999988 5
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCc-----eeEEEEEccCCCCCC
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAPSGSP 166 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~-----~~~~w~~l~~~~~~~ 166 (696)
+.+|++++++.||+|||+|.|.+. +...|.|+|||++.++ +++||.+.|+|.++..+. ....|++|... ...
T Consensus 69 ~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-~~~ 146 (173)
T 2nq3_A 69 SKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEP 146 (173)
T ss_dssp EEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCT
T ss_pred EeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-CCC
Confidence 579999999999999999999985 4778999999999997 899999999999886421 24679999554 223
Q ss_pred CCCCceEEEEEEEecCCC
Q 005439 167 PKPGASIQLELKFTPCDK 184 (696)
Q Consensus 167 ~~~~g~i~l~l~~~~~~~ 184 (696)
.+..|+|.|.|.|.+...
T Consensus 147 ~~~~G~L~v~l~~l~~~~ 164 (173)
T 2nq3_A 147 TETIGDLSICLDGLQLES 164 (173)
T ss_dssp TSEEEEEEEEEESEECC-
T ss_pred CcccEEEEEEEeeeecch
Confidence 356899999999998744
No 13
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.69 E-value=3e-16 Score=145.05 Aligned_cols=120 Identities=19% Similarity=0.352 Sum_probs=99.0
Q ss_pred cEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eeEEE
Q 005439 17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR 95 (696)
Q Consensus 17 g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~~~ 95 (696)
..|.|+|++|++|+++|..+. +||||++.+.. ..+.+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k 42 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS 42 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence 579999999999998876654 89999999965 45689
Q ss_pred eeeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC----CeeeEEEecccccc-cCCceeEEEEEccCCC-CCCCCC
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTI-ATGELISRWYDIIAPS-GSPPKP 169 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~----~~~iG~~~i~l~~l-~~g~~~~~w~~l~~~~-~~~~~~ 169 (696)
|++++++.||+|||+|.|.+..+. .|.|+|||++.++ +++||.+.|++..+ ..+.....|++|.... ..+.+.
T Consensus 43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~ 121 (132)
T 3pyc_A 43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV 121 (132)
T ss_dssp CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence 999999999999999999998765 4999999999886 69999999999988 3344445889995532 223456
Q ss_pred CceEEEEEEE
Q 005439 170 GASIQLELKF 179 (696)
Q Consensus 170 ~g~i~l~l~~ 179 (696)
.|+|.|+|++
T Consensus 122 ~G~i~v~l~~ 131 (132)
T 3pyc_A 122 RGQIVVSLQT 131 (132)
T ss_dssp CSEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 8999999875
No 14
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.68 E-value=2.5e-16 Score=181.88 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=104.6
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCcc
Q 005439 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~ 315 (696)
.+.|+.+.+.|++|++ +|+|+.|.+.+ ...+.++|++||++||+|+||+ |..+.+..
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~----------------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK----------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT----------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC----------------cHHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 3568899999999997 99998776532 1589999999999999999996 87753210
Q ss_pred CCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceE---EEEcccc
Q 005439 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT---AFIGGID 392 (696)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~v---AfvGG~d 392 (696)
.....+.+.|..+||++.. ..| .+++|+|++|||++.++ .+ ||+||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~--~~~--------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIF--SAP--------------GLKIHAKLFLISRKENG----EVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEE--CCT--------------TCEECCEEEEEEEEETT----EEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEE--ecC--------------CccccceEEEEEeccCC----eEEEEEEEeCCc
Confidence 0112455667889999874 222 24679999999952000 26 9999999
Q ss_pred cCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHh
Q 005439 393 LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRK 458 (696)
Q Consensus 393 l~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~ 458 (696)
+... . ...|+|+++.+.|| +|.++...|...|+.
T Consensus 459 ~d~r-s-------------------------------~~~n~D~~l~i~~~~i~~~l~~~F~~~~~~ 493 (687)
T 1xdp_A 459 FNEK-T-------------------------------ARLYTDYSLLTADARITNEVRRVFNFIENP 493 (687)
T ss_dssp SCTT-G-------------------------------GGTEEEEEEEECCHHHHHHHHHHHHHHHCT
T ss_pred CCcc-h-------------------------------hhhcceEEEEEeCHHHHHHHHHHHHHHHhh
Confidence 8763 1 12479999999987 699999999999975
No 15
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.67 E-value=7.1e-17 Score=160.02 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=100.5
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
+..|.+|+++|++|+++|+|+.|+|+ ...|.++|++||+|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~-----------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFS-----------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBC-----------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeC-----------------CHHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 57899999999999999999998773 1579999999999999999996 8632110
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
.......|..+||.++... + ...+|+|++|||++ ++|+||.|++...+..
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~--~--------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~~ 149 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQ--D--------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQN 149 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECC--S--------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHHH
T ss_pred ------cHHHHHHHHhcCCCccccc--c--------------cccccCcEEEEcce--------EEEecCccCChhhhcc
Confidence 1123456778899987421 1 12469999999998 9999999998742211
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~ 461 (696)
-|-++.+.-.+++|..+.+.|.+.|+....
T Consensus 150 -------------------------------n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 150 -------------------------------NRENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp -------------------------------CCEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred -------------------------------cceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 122344444456899999999999997644
No 16
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.67 E-value=1.6e-16 Score=182.29 Aligned_cols=205 Identities=12% Similarity=0.174 Sum_probs=143.0
Q ss_pred cchHHHHHHHHHhccc-----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCcc
Q 005439 241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL 315 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~ 315 (696)
.+.|+.++++|++|++ +|.++.|++.. +..+.++|++||++||+|+||+ | .++..
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arf-- 410 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARF-- 410 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCc--
Confidence 4679999999999999 99999997731 1589999999999999999996 8 65421
Q ss_pred CCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccc---
Q 005439 316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID--- 392 (696)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~d--- 392 (696)
....+..+.+.|+++||+|.+ .+ .++++|+|++|||++.. ++ ||++
T Consensus 411 -------dee~ni~wa~~Le~aGv~Vv~--g~--------------~~lk~H~Ki~lIdrr~~------~~--g~~~~y~ 459 (705)
T 2o8r_A 411 -------DEENNLRLSERMRRSGIRIVY--SM--------------PGLKVHAKTALILYHTP------AG--ERPQGIA 459 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEE--CC--------------TTCCBCCCEEEEEECCC------SS--SCCCEEE
T ss_pred -------chhhhHHHHHHHHHCCCEEEE--cc--------------CCCCceeEEEEEecccc------cC--CceeEEE
Confidence 111234678889999999874 11 23688999999998510 22 4430
Q ss_pred -cCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhcccchhhhhhc
Q 005439 393 -LCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATKLTELTFKFK 470 (696)
Q Consensus 393 -l~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~~~~~~~~~~~~~ 470 (696)
++.|.|... . ..-|.|+++...+| +|.|+...|...|... .
T Consensus 460 ~igtGN~n~~--------------------------t-ariy~D~~l~t~~~~i~~dl~~vF~~~tg~~--~-------- 502 (705)
T 2o8r_A 460 LLSTGNFNET--------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRILDGDP--E-------- 502 (705)
T ss_dssp EEESSCSSCC--------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHHHTTCC--C--------
T ss_pred eccccceeee--------------------------E-EEEEeeeeeeecChHHHHHHHHHHHHHhCCC--C--------
Confidence 012222110 0 12367777777775 6699999996665311 0
Q ss_pred ccccccccccccccccccccCccccccCCCccccCCCCcccccccCCCCCCeeeeEEeeccCCCCCCCCCCcchhhcccc
Q 005439 471 RVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSL 550 (696)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l 550 (696)
+ ... .|++-+ |..
T Consensus 503 ----------------------------------~--------------~~~-~~l~~s---------P~~--------- 515 (705)
T 2o8r_A 503 ----------------------------------P--------------ARF-SRLLVA---------RYN--------- 515 (705)
T ss_dssp ----------------------------------C--------------SCC-SSCEET---------TTT---------
T ss_pred ----------------------------------C--------------CCc-eEEEEC---------Cch---------
Confidence 0 000 234332 221
Q ss_pred ccccCccchhHHHHHHHHHHHhccc----eEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEE
Q 005439 551 ICAKDVVIDKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVI 626 (696)
Q Consensus 551 ~~~~~~~~e~sI~~ayl~~I~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~Iv 626 (696)
....|.+.+..+|.+|++ +|+|.++| +++. .+..+|.+| +.+||+|.|+
T Consensus 516 -------~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D~-----------------~ii~aL~~A--s~~GV~V~LI 568 (705)
T 2o8r_A 516 -------MGEAITNLIEREIENVKRGKRGYMLLKMNG-LQDK-----------------NVITQLYRA--SEAGVEIDLI 568 (705)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCEEEEE
T ss_pred -------HHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEE
Confidence 247799999999999999 99999998 7763 788899888 4589999999
Q ss_pred e
Q 005439 627 I 627 (696)
Q Consensus 627 l 627 (696)
+
T Consensus 569 V 569 (705)
T 2o8r_A 569 V 569 (705)
T ss_dssp E
T ss_pred E
Confidence 9
No 17
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.65 E-value=1.4e-15 Score=141.24 Aligned_cols=107 Identities=17% Similarity=0.419 Sum_probs=91.7
Q ss_pred eeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-
Q 005439 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP- 89 (696)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~- 89 (696)
+..+..|.|.|+|++|++|+. +..+. +||||++.+.
T Consensus 14 ~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l~~ 50 (134)
T 2b3r_A 14 SVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYLLP 50 (134)
T ss_dssp EEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEEES
T ss_pred EEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEEEc
Confidence 345788999999999999995 43332 8999999982
Q ss_pred ---CeeEEEeeeccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 90 ---QATVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 90 ---~~~~~~T~~~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
...+.||++++++.||+|||+|.|. +.. ....|.|+|||.+.++ +++||++.|+|.++..+.....||+|.
T Consensus 51 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 51 DTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp CSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred CCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 2345799999999999999999999 664 3468999999999987 899999999999999888899999994
No 18
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=3.6e-15 Score=155.59 Aligned_cols=128 Identities=29% Similarity=0.480 Sum_probs=108.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~ 92 (696)
..|.|.|+|++|++|+.++..+. +||||++.+.. ..
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~ 54 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 54 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCc
Confidence 57899999999999998776554 89999999953 34
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCC
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK 168 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~ 168 (696)
..+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.++|.++..+.....|++|....+....
T Consensus 55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~ 134 (284)
T 2r83_A 55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134 (284)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCC
T ss_pred eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccccc
Confidence 57999999999999999999998753 467999999999987 89999999999999988889999999654433345
Q ss_pred CCceEEEEEEEecCCC
Q 005439 169 PGASIQLELKFTPCDK 184 (696)
Q Consensus 169 ~~g~i~l~l~~~~~~~ 184 (696)
..|+|.++++|.|...
T Consensus 135 ~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 135 KLGDICFSLRYVPTAG 150 (284)
T ss_dssp CCCEEEEEEEEETTTT
T ss_pred ccccEEEEEEecCcCC
Confidence 6899999999998643
No 19
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=1.6e-15 Score=143.74 Aligned_cols=104 Identities=33% Similarity=0.537 Sum_probs=91.5
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (696)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 77 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCc
Confidence 46899999999999998775554 8999999994 234
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
..+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+...+.|++|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 57999999999999999999998753 467999999999987 899999999999999888899999994
No 20
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.62 E-value=1.6e-15 Score=141.99 Aligned_cols=103 Identities=33% Similarity=0.548 Sum_probs=90.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (696)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKK 69 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCc
Confidence 56899999999999998765443 8999999993 344
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+...+.|++|
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 140 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEEC
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEEC
Confidence 67999999999999999999998754 367999999999987 89999999999999999899999999
No 21
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=143.41 Aligned_cols=105 Identities=17% Similarity=0.331 Sum_probs=90.1
Q ss_pred ccEEEEEEEEeeCCCCCCC-cchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 16 HGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
.+.|.|+|++|++|+.++. .+. +||||++.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR 59 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence 5899999999999997662 333 89999999953
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
..+.+|++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||.+.|+|.++..+.....|++|...
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 23679999999999999999999987743 45999999999987 89999999999999877788899999543
No 22
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.62 E-value=2.8e-15 Score=145.18 Aligned_cols=107 Identities=21% Similarity=0.386 Sum_probs=93.2
Q ss_pred EeEccEEEEEEEEeeCCCCCCC-cchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
.+..|.|.|+|++|++|+.++. .+. +||||++.+..
T Consensus 26 ~y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~~ 63 (171)
T 2q3x_A 26 EDKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLEN 63 (171)
T ss_dssp EEETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEET
T ss_pred EECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEECC
Confidence 3578999999999999998774 343 89999999853
Q ss_pred ---eeEEEeeeccCCCCCeeeeEEEEeecCCCCeEEEEEE-eCCCCC-CeeeEEEecccccccCCceeEEEEEccC
Q 005439 91 ---ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (696)
Q Consensus 91 ---~~~~~T~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~-d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (696)
..+.+|++++++.||+|||+|.|.+......|.|+|| |++.++ +++||.+.|+|.++..+.....||+|..
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~ 139 (171)
T 2q3x_A 64 GACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139 (171)
T ss_dssp TEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred CccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence 2367999999999999999999999877778999999 999987 8999999999999998888999999943
No 23
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.61 E-value=2.6e-15 Score=141.78 Aligned_cols=106 Identities=23% Similarity=0.392 Sum_probs=91.8
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-- 90 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-- 90 (696)
.+..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 27 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~ 64 (149)
T 1a25_A 27 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 64 (149)
T ss_dssp EESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESCT
T ss_pred EecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECCC
Confidence 4568999999999999998775554 89999999963
Q ss_pred --eeEEEeeeccCCCCCeeeeEEEEeecCC--CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccC
Q 005439 91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (696)
Q Consensus 91 --~~~~~T~~~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (696)
..+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+ ..+.||+|..
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 65 KSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp TCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 4567999999999999999999998764 357999999999997 89999999999999866 4789999953
No 24
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.61 E-value=3.1e-15 Score=138.68 Aligned_cols=106 Identities=23% Similarity=0.409 Sum_probs=91.5
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC---
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--- 89 (696)
.+..|.|.|+|++|++|+.++..+. +||||++.+.
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~ 49 (137)
T 3rdl_A 12 EVTDEKLHVTVRDAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP 49 (137)
T ss_dssp EEETTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEECCT
T ss_pred EEcCCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeeEEEEEEcCC
Confidence 4578999999999999998776554 8999999993
Q ss_pred -CeeEEEeeeccCCCCCeeeeEEEEeecCCC--CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccC
Q 005439 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA 161 (696)
Q Consensus 90 -~~~~~~T~~~~~~~~P~wne~f~~~~~~~~--~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~ 161 (696)
.....+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||.+.|+|.++..+. ...||+|..
T Consensus 50 ~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~ 124 (137)
T 3rdl_A 50 KNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLN 124 (137)
T ss_dssp TCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBC
T ss_pred CCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcC
Confidence 344579999999999999999999987543 56999999999987 899999999999998665 789999954
No 25
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.61 E-value=1e-15 Score=143.03 Aligned_cols=107 Identities=28% Similarity=0.440 Sum_probs=92.1
Q ss_pred eEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 005439 12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA 91 (696)
Q Consensus 12 ~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~ 91 (696)
+.+..|.|.|+|++|++|+.++..+. +||||++.+...
T Consensus 13 l~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~ 50 (142)
T 1rh8_A 13 INYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPG 50 (142)
T ss_dssp EEEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTS
T ss_pred EEEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecC
Confidence 34668999999999999998776554 899999999763
Q ss_pred -------------eEEEeeeccCCCCCeeeeEEEEe-ecC---CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCcee
Q 005439 92 -------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI 153 (696)
Q Consensus 92 -------------~~~~T~~~~~~~~P~wne~f~~~-~~~---~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~ 153 (696)
...+|++++++.||+|||+|.|. +.. ....|.|+|||++.++ +++||.+.|+|.++..+...
T Consensus 51 ~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~ 130 (142)
T 1rh8_A 51 RGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT 130 (142)
T ss_dssp SCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC
T ss_pred CCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCC
Confidence 24799999999999999999997 543 3567999999999987 89999999999999877778
Q ss_pred EEEEEcc
Q 005439 154 SRWYDII 160 (696)
Q Consensus 154 ~~w~~l~ 160 (696)
..||+|.
T Consensus 131 ~~W~~L~ 137 (142)
T 1rh8_A 131 PRWYPLK 137 (142)
T ss_dssp CEEEECB
T ss_pred CeEEECC
Confidence 8999994
No 26
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=138.43 Aligned_cols=104 Identities=29% Similarity=0.473 Sum_probs=90.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (696)
..+.|.|+|++|++|+.++..+. +||||++.+. ...
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKH 61 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46899999999999998775554 8999999994 344
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
..+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.|+|.++..+.....|++|.
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 134 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECc
Confidence 6799999999999999999998643 2467999999999987 899999999999999888889999994
No 27
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=144.94 Aligned_cols=104 Identities=25% Similarity=0.414 Sum_probs=90.0
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|++|++++..+. +||||++.+..
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~ 78 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSES 78 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCH
T ss_pred CCCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCC
Confidence 46899999999999998876554 89999999954
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEeccccccc-CCceeEEEEEcc
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII 160 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~l~ 160 (696)
..+.||++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++. .+.....||+|.
T Consensus 79 ~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 2368999999999999999999998753 457999999999987 899999999999996 467788999983
No 28
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.59 E-value=5.7e-15 Score=135.53 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=83.2
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (696)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 54 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 5889999999999998775554 8999999982 24
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeCCCCC---CeeeEEEecccccccCCceeEEEEEc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
.+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.++ +++||++.++|.++.... ...||+|
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 56799999999999999999999643 2367999999999986 899999999999987654 7899998
No 29
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.58 E-value=7.3e-15 Score=139.24 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
..+++.+.++|++|+++|+|+.|+|. + ..+.++|.+|++|||+|+||+ |..++..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~--------~---------~~i~~aL~~a~~rGV~Vril~-~~~~~~~------- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFT--------A---------PDIMKALVAAKKRGVDVKIVI-DERGNTG------- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBC--------C---------HHHHHHHHHHHHTTCEEEEEE-ESTTCCS-------
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeC--------C---------HHHHHHHHHHHHCCCEEEEEE-eCccccc-------
Confidence 36799999999999999999987662 1 579999999999999999996 6653311
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEEEcccccCCccCCC
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT 400 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~R~Dt 400 (696)
.......+.|.+.|++++... + ...+|.|++|||++ ++++||.|++...+
T Consensus 68 ----~~~~~~~~~L~~~gv~v~~~~--~--------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~-- 117 (155)
T 1byr_A 68 ----RASIAAMNYIANSGIPLRTDS--N--------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE-- 117 (155)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEEC--S--------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred ----cccHHHHHHHHHCCCeEEEcC--C--------------cccccceEEEECCC--------EEEEECCCCCcccc--
Confidence 012345666778899887421 1 12579999999998 99999999987311
Q ss_pred CCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh--HHHHHHHHHHHHHHhhc
Q 005439 401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKAT 460 (696)
Q Consensus 401 ~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp--av~dl~~~F~qrWn~~~ 460 (696)
..|++..+.+.|+ .+.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 1467999999994 89999999999998653
No 30
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.57 E-value=1.3e-14 Score=137.59 Aligned_cols=106 Identities=23% Similarity=0.404 Sum_probs=89.4
Q ss_pred eEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 005439 14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--- 90 (696)
Q Consensus 14 ~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--- 90 (696)
...|.|.|+|++|++|+.++ .+. +||||++.+..
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~~~ 60 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPEDS 60 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESCSC
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcCCC
Confidence 56789999999999999876 333 89999999832
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeec--CCCCeEEEEEEeCCCCC--CeeeEEEecccccccC-CceeEEEEEccCC
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAP 162 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~--~~~~~l~i~v~d~~~~~--~~~iG~~~i~l~~l~~-g~~~~~w~~l~~~ 162 (696)
..+.+|++++++.||+|||+|.|.+. .....|.|+|||.+.++ +++||++.|+|.++.. +.....|++|...
T Consensus 61 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 61 RLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp CTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred CccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 34579999999999999999999984 34456999999999874 7999999999999984 7888999999543
No 31
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.57 E-value=7.1e-15 Score=136.92 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~ 91 (696)
.+.|.|+|++|++|+.++..+. +||||++.+. ..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~ 57 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK 57 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence 6899999999999998776554 8999999983 24
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeCCCCC---CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
.+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|.++.... ...||+|...
T Consensus 58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~ 134 (141)
T 1v27_A 58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTH 134 (141)
T ss_dssp SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCC
T ss_pred cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccc
Confidence 457999999999999999999995332 367999999999986 799999999999987554 7899999543
No 32
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.57 E-value=1.1e-14 Score=136.15 Aligned_cols=103 Identities=29% Similarity=0.480 Sum_probs=89.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASK 64 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSG
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence 57899999999999998775553 89999999964
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEe-ecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
....+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.|+|.++..++....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 356899999999999999999998 5432 257999999999987 79999999999999988888888888
No 33
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.56 E-value=1.4e-14 Score=135.09 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=72.2
Q ss_pred CCcEEEEEEC---CeeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCce
Q 005439 80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL 152 (696)
Q Consensus 80 ~dpyv~v~~~---~~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~ 152 (696)
+||||++.+. .....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..+..
T Consensus 44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~ 123 (138)
T 1wfm_A 44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG 123 (138)
T ss_dssp CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence 8999999993 34467999999999999999999998764 357999999999987 8999999999999987778
Q ss_pred eEEEEEccC
Q 005439 153 ISRWYDIIA 161 (696)
Q Consensus 153 ~~~w~~l~~ 161 (696)
...|++|..
T Consensus 124 ~~~W~~L~~ 132 (138)
T 1wfm_A 124 AAQWGELKT 132 (138)
T ss_dssp CCEEEECCC
T ss_pred ccceeeCcC
Confidence 889999943
No 34
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.56 E-value=1.8e-14 Score=133.53 Aligned_cols=92 Identities=27% Similarity=0.408 Sum_probs=79.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 51 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKR 51 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCc
Confidence 46899999999999998776544 89999999953
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEeccccccc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIA 148 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~ 148 (696)
..+.+|++++++.||+|||+|.|.+.... ..|.|+|||.+.++ +++||++.|++.++.
T Consensus 52 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 52 VEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 34679999999999999999999987654 56999999999987 899999999998653
No 35
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=135.04 Aligned_cols=104 Identities=22% Similarity=0.418 Sum_probs=87.6
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~ 91 (696)
.+.|.|+|++|++|+.++..+ +||||++.+.. .
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence 789999999999999765322 79999999832 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC---CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~---~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
.+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|+|..+..+.....|++|...
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 457999999999999999999998653 357999999999875 36999999999999877788899999543
No 36
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.55 E-value=2.6e-14 Score=132.96 Aligned_cols=105 Identities=29% Similarity=0.420 Sum_probs=87.6
Q ss_pred EccEEEEEEEEeeCCCCCCCc-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e
Q 005439 15 LHGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~ 91 (696)
..+.|.|+|++|++|+.++.. +. +||||++.+.. .
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKK 57 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCC
Confidence 568899999999999987753 33 89999999953 4
Q ss_pred eEEEeeeccCCCCCeeeeEEEEe-ecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCce-eEEEEEccC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA 161 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~-~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~-~~~w~~l~~ 161 (696)
.+.+|++++++.||+|||+|.|. +... ...|.|+|||++.++ +++||++.|+|.++..+.. ...|++|..
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 56899999999999999999996 6543 357999999999987 8999999999999986543 456788843
No 37
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.55 E-value=2.8e-14 Score=136.08 Aligned_cols=104 Identities=27% Similarity=0.445 Sum_probs=87.8
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR 60 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCce
Confidence 57899999999999998775554 89999999852
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccc------------cCCceeE
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELIS 154 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l------------~~g~~~~ 154 (696)
....+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+ ..+..+.
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~ 140 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEE
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeee
Confidence 2467999999999999999999998764 356999999999987 89999999999853 2356788
Q ss_pred EEEEcc
Q 005439 155 RWYDII 160 (696)
Q Consensus 155 ~w~~l~ 160 (696)
.|++|.
T Consensus 141 ~W~~L~ 146 (159)
T 1tjx_A 141 QWHTLQ 146 (159)
T ss_dssp EEEECB
T ss_pred eEEECc
Confidence 999984
No 38
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=135.16 Aligned_cols=110 Identities=25% Similarity=0.453 Sum_probs=88.7
Q ss_pred EccEEEEEEEEeeCCCCC-CCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e
Q 005439 15 LHGDLDLKIIRARRLPNM-DMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A 91 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~ 91 (696)
..+.|.|+|++|++|+.. +..+. +...+.+||||++.+.. .
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~------------------------------------~~~~~~~dpyv~v~l~~~~~ 67 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGS------------------------------------RQDMAHSNPYVKICLLPDQK 67 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCS------------------------------------SCTTCCCCCEEEEEEETCCS
T ss_pred CCCEEEEEEEEEeCCCCccccccc------------------------------------cccCCCCCcEEEEEEEeCCC
Confidence 368999999999999973 43220 00112389999999953 3
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
.+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|+|.++..++....|++|.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 457999999999999999999998753 357999999999987 899999999999998777778899883
No 39
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.53 E-value=5.1e-14 Score=135.34 Aligned_cols=91 Identities=29% Similarity=0.405 Sum_probs=79.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|++|+.++..+. +||||++.+..
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGK 72 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence 46899999999999998776554 89999999965
Q ss_pred eeEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccc
Q 005439 91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI 147 (696)
Q Consensus 91 ~~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l 147 (696)
..+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||++.|++.++
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 3568999999999999999999998753 457999999999987 89999999999875
No 40
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.53 E-value=9.5e-15 Score=138.41 Aligned_cols=102 Identities=27% Similarity=0.428 Sum_probs=79.7
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCe-
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQA- 91 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~- 91 (696)
..+.|.|+|++|++|+.++..+. +||||++.+ ++.
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKR 65 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeE
Confidence 57899999999999998775554 899999999 443
Q ss_pred -eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEcc
Q 005439 92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII 160 (696)
Q Consensus 92 -~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~ 160 (696)
.+.+|++++++.||+|||+|.|.+.... ..|.|+|||++.++ +++||++.|++.. .+.....|++|+
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 137 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEIC 137 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHH
Confidence 2579999999999999999999987753 56999999999987 8999999999987 233344555554
No 41
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.52 E-value=1e-14 Score=146.65 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
.+.++.|+++|++|+++|+|+.|+|+ ...|.++|++||+|||+||||+ |..++...
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~Y~~~-----------------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------ 112 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAIYTFT-----------------SLFLADSIKRALQRGVIIRIIS-DGEMVYSK------ 112 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSCBC-----------------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred HHHHHHHHHHHHHhhhEEEEEEEEeC-----------------CHHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence 57899999999999999999998873 1589999999999999999996 98754321
Q ss_pred CcccCChHHHHhhhcCCCcEEEecCCCCCCccc--hhhc--ccccccccCccceEEecCCCCCCCcceEEEEcccccCCc
Q 005439 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLS--YFKQ--QIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG 396 (696)
Q Consensus 321 ~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~--~~~~--~~~~~~~rhHqK~vVID~~~~~~~~~~vAfvGG~dl~~~ 396 (696)
......+...++.+............ .+.. ...+.+.++|+|++|+|+. ++++||.|++..
T Consensus 113 -------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~ 177 (220)
T 4gel_A 113 -------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL 177 (220)
T ss_dssp -------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred -------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence 11223334455555431111000000 0000 0112345788999999987 999999998762
Q ss_pred cCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcc
Q 005439 397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461 (696)
Q Consensus 397 R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gpav~dl~~~F~qrWn~~~~ 461 (696)
-. ...|.|+.+...|++|.++.+.|.+.|+....
T Consensus 178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 11 23588999999999999999999999997544
No 42
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.51 E-value=8e-14 Score=146.68 Aligned_cols=125 Identities=25% Similarity=0.391 Sum_probs=100.3
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT 92 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~~ 92 (696)
-.+.|.|+|++|++|+.+|..+. +||||++.+. +..
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~ 55 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKK 55 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCe
Confidence 36899999999999998776554 8999999993 345
Q ss_pred EEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecc-ccccc-CCceeEEEEEccCCCCCC
Q 005439 93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIA-TGELISRWYDIIAPSGSP 166 (696)
Q Consensus 93 ~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~-l~~l~-~g~~~~~w~~l~~~~~~~ 166 (696)
..+|++++++.||+|||+|.|.+... ...|.|+|||.+.++ +++||++.++ +..+. .+.....|++|.... ..
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-~~ 134 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-SE 134 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-SC
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccc-cc
Confidence 57999999999999999999998654 347999999999987 8999999996 44443 244567899995433 23
Q ss_pred CCCCceEEEEEEEecC
Q 005439 167 PKPGASIQLELKFTPC 182 (696)
Q Consensus 167 ~~~~g~i~l~l~~~~~ 182 (696)
....|+|.++++|.|.
T Consensus 135 ~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 135 KADLGELNFSLCYLPT 150 (296)
T ss_dssp CSCCCEEEEEEEEETT
T ss_pred ccccceEEEEEEeccc
Confidence 3457999999999874
No 43
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.49 E-value=1.5e-13 Score=126.98 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=89.1
Q ss_pred CCcEEEEEECCeeEEEeeecc-CCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeE
Q 005439 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS 154 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~ 154 (696)
+|||+++.+-+.+ .||++++ ++.||+|||.|.|++..+ .+.|.|+|+|++.++ +.+||++.++|.++..+....
T Consensus 37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~ 115 (144)
T 3l9b_A 37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE 115 (144)
T ss_dssp EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence 8999999997766 6999998 699999999999998875 466999999999987 999999999999998777777
Q ss_pred EEEEccCCCCCCCCCCceEEEEEEEecCCC
Q 005439 155 RWYDIIAPSGSPPKPGASIQLELKFTPCDK 184 (696)
Q Consensus 155 ~w~~l~~~~~~~~~~~g~i~l~l~~~~~~~ 184 (696)
.+.+|.+.+.++. .++|.|+|+|.|.+.
T Consensus 116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 116 VSDTLIDDNNAII--KTSLSMEVRYQAADG 143 (144)
T ss_dssp EEEEEECTTSCEE--EEEEEEEEEEEETTC
T ss_pred EeecccCCCCCcc--ccEEEEEEEecCCCC
Confidence 7888987776653 489999999999754
No 44
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.48 E-value=3.3e-13 Score=124.81 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=68.3
Q ss_pred CCcEEEEEECCeeEEEeeecc-CCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCc--eeEE
Q 005439 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR 155 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~--~~~~ 155 (696)
+||||++. .. . .+|++++ ++.||+|||+|.|.+......|.|+|||++ ++ |++||++.|+|.++.... ....
T Consensus 23 ~DPYv~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~ 98 (131)
T 2cjt_A 23 FNTYVTLK-VQ-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 98 (131)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred cCeEEEEE-ec-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence 89999999 22 2 3566655 699999999999999988788999999999 65 899999999999986322 1224
Q ss_pred EEEccC----CCCC----CCCCCceEEEEEEE
Q 005439 156 WYDIIA----PSGS----PPKPGASIQLELKF 179 (696)
Q Consensus 156 w~~l~~----~~~~----~~~~~g~i~l~l~~ 179 (696)
|.++.- ..++ -....+.+.+.++|
T Consensus 99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 555421 1211 11124458887776
No 45
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.43 E-value=5.7e-13 Score=150.43 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=99.6
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEE
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA 94 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~ 94 (696)
-.|.|.|+|++|++|+++|..+. +||||++.+++.. .
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~ 421 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-Y 421 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-E
T ss_pred CCceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-c
Confidence 35789999999999998776654 8999999998765 7
Q ss_pred EeeeccCCCCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCce----eEEEEEccCCCCCCCC
Q 005439 95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPK 168 (696)
Q Consensus 95 ~T~~~~~~~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~----~~~w~~l~~~~~~~~~ 168 (696)
+|++++++.||+|||+|.|.+..+. ..|.|+|||+|.++ +++||.+.+++.++..+.. ...|+++. . .
T Consensus 422 ~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~-~-----~ 495 (510)
T 3jzy_A 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH-E-----V 495 (510)
T ss_dssp ECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB-S-----S
T ss_pred cCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCC-C-----C
Confidence 9999999999999999999997765 56999999999998 8999999999999986544 77899983 2 2
Q ss_pred CCceEEEEEEEe
Q 005439 169 PGASIQLELKFT 180 (696)
Q Consensus 169 ~~g~i~l~l~~~ 180 (696)
..|+|.|++.+.
T Consensus 496 ~~G~i~l~~~l~ 507 (510)
T 3jzy_A 496 PTGEVWVRFDLQ 507 (510)
T ss_dssp SSCEEEEEEEEE
T ss_pred CCceEEEEEEEE
Confidence 579998888764
No 46
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.39 E-value=2.7e-12 Score=123.72 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCcEEEEEECCeeEEEeeecc-CCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCC-CeeeEEEecccccccCCc------
Q 005439 80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE------ 151 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~~T~~~~-~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~------ 151 (696)
+||||++. .. . .+|++++ ++.||+|||+|.|.+......|.|+|||++ ++ |++||++.|+|.++....
T Consensus 32 ~DPYV~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~~~g~~~ 107 (167)
T 2cjs_A 32 FNTYVTLK-VQ-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE 107 (167)
T ss_dssp CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred CCeEEEEE-ec-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcccCcCCccc
Confidence 89999999 22 2 4677765 599999999999999988888999999999 65 999999999999986322
Q ss_pred eeEEEEEccCCCCC----CCCCCceEEEEEEEecC
Q 005439 152 LISRWYDIIAPSGS----PPKPGASIQLELKFTPC 182 (696)
Q Consensus 152 ~~~~w~~l~~~~~~----~~~~~g~i~l~l~~~~~ 182 (696)
....|+.+..+.++ .....+++++.++|...
T Consensus 108 ~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 108 WLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred ceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 22244554322221 01123457777776543
No 47
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.38 E-value=2.6e-12 Score=145.14 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=92.6
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeEEE
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR 95 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~~~ 95 (696)
.|.|.|+|++|++|+. |..+. +||||+|.+++.. .|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~k 428 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FR 428 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-ee
Confidence 4689999999999997 76654 9999999999865 89
Q ss_pred eeeccCCCCCeeeeEEEEeecC--CCCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCCCCCce
Q 005439 96 TRVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS 172 (696)
Q Consensus 96 T~~~~~~~~P~wne~f~~~~~~--~~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~~~~g~ 172 (696)
|++++++.||+|||+|.|.+.. ....|+|+|||+|.++ |++||++.++|. .| ..+.|++| ..|+
T Consensus 429 Tkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~ 495 (540)
T 3nsj_A 429 TGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL---------NHGR 495 (540)
T ss_dssp CCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC---------SSSE
T ss_pred eeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc---------CCeE
Confidence 9999999999999999998643 5677999999999987 799999999987 34 36789987 2688
Q ss_pred EEEEEEEecC
Q 005439 173 IQLELKFTPC 182 (696)
Q Consensus 173 i~l~l~~~~~ 182 (696)
|++++...-.
T Consensus 496 l~~~~~~~c~ 505 (540)
T 3nsj_A 496 VKFSYHAKCL 505 (540)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEC
Confidence 8888765443
No 48
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.38 E-value=5.3e-14 Score=157.97 Aligned_cols=129 Identities=24% Similarity=0.412 Sum_probs=27.2
Q ss_pred eeEeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC
Q 005439 11 KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ 90 (696)
Q Consensus 11 ~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~ 90 (696)
......|.|+|+|++|++|+++ .||||++.+++
T Consensus 5 ~~~r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~ 37 (483)
T 3bxj_A 5 NSRRVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDD 37 (483)
T ss_dssp CEEEEEECC-----------------------------------------------------------------------
T ss_pred ccceeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECC
Confidence 3456789999999999999842 38999999988
Q ss_pred eeEEEeeeccCC---CCCeeeeEEEEeecCCCCeEEEEEEeC-CC---CC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 91 ATVARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-DV---FG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 91 ~~~~~T~~~~~~---~~P~wne~f~~~~~~~~~~l~i~v~d~-~~---~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
....||++++++ .||+|||+|.|.+.+....|.|+|||. +. .+ +++||.+.|++.++..+...+.||+|..+
T Consensus 38 ~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~ 117 (483)
T 3bxj_A 38 MLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117 (483)
T ss_dssp ---------------------CCEECC------------------------------------------CCEECC-----
T ss_pred eEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence 767899999999 999999999999766667899999994 42 44 89999999999999988889999999654
Q ss_pred CC---------------------CCCCCCceEEEEEEEecCCCCC
Q 005439 163 SG---------------------SPPKPGASIQLELKFTPCDKNP 186 (696)
Q Consensus 163 ~~---------------------~~~~~~g~i~l~l~~~~~~~~p 186 (696)
.. +..+..|+|+|+++|.+....|
T Consensus 118 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 118 TGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp ---------------------------------CEEEEEECCBCC
T ss_pred CCccccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence 32 1123469999999998875444
No 49
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.36 E-value=3.2e-12 Score=147.31 Aligned_cols=122 Identities=23% Similarity=0.423 Sum_probs=99.9
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..+.|.|+|++|++|+.++... .+.+||||+|.+.+
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~----------------------------------------~~~~DPYV~V~l~g~~~d 534 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNK----------------------------------------NSIVDPKVIVEIHGVGRD 534 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCS----------------------------------------SSCCCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcCCCCcccccc----------------------------------------cCCCCcEEEEEEecCCCC
Confidence 5689999999999999766310 01289999999944
Q ss_pred eeEEEeeeccCC-CCCeeeeEEEEeecCCC-CeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCCCCCCC
Q 005439 91 ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167 (696)
Q Consensus 91 ~~~~~T~~~~~~-~~P~wne~f~~~~~~~~-~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~~~~ 167 (696)
..+.||++++++ .||+|||+|.|.+..+. ..|.|+|||++.++ +++||++.|||..+..|. +|++|.+..+.+.
T Consensus 535 ~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~ 611 (624)
T 1djx_A 535 TGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH 611 (624)
T ss_dssp CEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE
T ss_pred cceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC
Confidence 345799999997 99999999999998764 57899999999986 899999999999998774 6999977666542
Q ss_pred CCCceEEEEEEEe
Q 005439 168 KPGASIQLELKFT 180 (696)
Q Consensus 168 ~~~g~i~l~l~~~ 180 (696)
..+.|.|.+.|.
T Consensus 612 -~~~~L~v~i~~~ 623 (624)
T 1djx_A 612 -PSATLFVKISIQ 623 (624)
T ss_dssp -EEEEEEEEEEEE
T ss_pred -CceEEEEEEEEE
Confidence 368888888875
No 50
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.32 E-value=3.1e-12 Score=148.89 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=90.9
Q ss_pred EccEEEEEEEEeeCCCC---CCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 005439 15 LHGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~- 90 (696)
..|.|.|+|++|++|+. +|..+. +||||+|.+.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~ 53 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTT 53 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTS
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecC
Confidence 45799999999999997 554333 89999999974
Q ss_pred -eeEEEeeeccCCCCCeeeeEEEEeecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEc
Q 005439 91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI 159 (696)
Q Consensus 91 -~~~~~T~~~~~~~~P~wne~f~~~~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l 159 (696)
..+.||++++++.||+|||+|.|.+..+ ...|+|+|||++.+++++||++.|+|.++..|.....|++|
T Consensus 54 ~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L 124 (749)
T 1cjy_A 54 PDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124 (749)
T ss_dssp TTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred CCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence 3457999999999999999999999874 56799999999998899999999999999988888999999
No 51
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.32 E-value=7.1e-12 Score=130.57 Aligned_cols=103 Identities=26% Similarity=0.443 Sum_probs=86.3
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (696)
.+.|.|+|++|++|+.++..+. +||||++.+. + .
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~ 186 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL 186 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence 5789999999999998776554 8999999984 2 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCCCC-CeeeEEEecccccc------------cCCceeEE
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTI------------ATGELISR 155 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~~~-~~~iG~~~i~l~~l------------~~g~~~~~ 155 (696)
.+.+|++++++.||+|||+|.|.+..+. ..|.|+|||++.++ +++||++.|++..+ ..+..+.+
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~ 266 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ 266 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence 4579999999999999999999987653 46999999999987 89999999999763 23456788
Q ss_pred EEEcc
Q 005439 156 WYDII 160 (696)
Q Consensus 156 w~~l~ 160 (696)
|++|.
T Consensus 267 W~~L~ 271 (284)
T 2r83_A 267 WHTLQ 271 (284)
T ss_dssp EEECB
T ss_pred eeecC
Confidence 99984
No 52
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.22 E-value=4.8e-12 Score=133.05 Aligned_cols=104 Identities=29% Similarity=0.447 Sum_probs=84.7
Q ss_pred ccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--e
Q 005439 16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A 91 (696)
Q Consensus 16 ~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~--~ 91 (696)
.|.|.|+|++|++|+.++..+. +||||++.+. + .
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~ 188 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRL 188 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTT
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCc
Confidence 5899999999999998876554 8999999995 2 2
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCC---CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~---~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
.+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.|++..+.. ...+.|++++..
T Consensus 189 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~ 262 (296)
T 1dqv_A 189 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLAN 262 (296)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSS
T ss_pred cceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhC
Confidence 457999999999999999999998765 246899999999997 8999999999987642 123456665443
No 53
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.01 E-value=1e-09 Score=128.18 Aligned_cols=107 Identities=22% Similarity=0.408 Sum_probs=91.3
Q ss_pred EeEccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC---
Q 005439 13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--- 89 (696)
Q Consensus 13 ~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--- 89 (696)
.+..+.|.|+|++|++|+.+|..+. +||||++.+.
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~ 205 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDP 205 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCS
T ss_pred eeccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCc
Confidence 3567899999999999998887664 8999999982
Q ss_pred -CeeEEEeeeccCCCCCeeeeEEEEeecCC--CCeEEEEEEeCCCCC-CeeeEEEecccccccCCceeEEEEEccCC
Q 005439 90 -QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP 162 (696)
Q Consensus 90 -~~~~~~T~~~~~~~~P~wne~f~~~~~~~--~~~l~i~v~d~~~~~-~~~iG~~~i~l~~l~~g~~~~~w~~l~~~ 162 (696)
...+.+|++++++.||+|||+|.|.+... ...|.|+|||++.++ +++||.+.+++.++..+. ...|+.++..
T Consensus 206 ~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 206 KSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp SCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeeccc
Confidence 23457999999999999999999998754 356999999999997 899999999999998654 5899999754
No 54
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.90 E-value=3.2e-09 Score=125.60 Aligned_cols=95 Identities=23% Similarity=0.406 Sum_probs=76.0
Q ss_pred CCcEEEEEECC-----eeEEEeeeccC-CCCCeeee-EEEEe-ecCC-CCeEEEEEEeCCCCCCeeeEEEecccccccCC
Q 005439 80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG 150 (696)
Q Consensus 80 ~dpyv~v~~~~-----~~~~~T~~~~~-~~~P~wne-~f~~~-~~~~-~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g 150 (696)
+||||+|.+.+ ..+.+|+++++ +.||+||| +|.|. +..+ ...|.|+|||++ +++||++.|||..|..|
T Consensus 742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence 89999999854 23469999976 69999999 69998 6554 356899999987 89999999999999987
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEec
Q 005439 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (696)
. ++++|.+..+.+. ..+.|.|.+.+..
T Consensus 819 y---R~vpL~~~~g~~l-~~atLfv~i~~~~ 845 (885)
T 3ohm_B 819 Y---HYVCLRNEANQPL-CLPALLIYTEASD 845 (885)
T ss_dssp E---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred c---eEEEecCCCCCcc-CceEEEEEEEEEe
Confidence 4 5788876655432 3678888888765
No 55
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.90 E-value=4.4e-09 Score=123.74 Aligned_cols=114 Identities=24% Similarity=0.399 Sum_probs=91.0
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..++|.|+|++|++|+.. . +||||+|.+.+
T Consensus 648 ~~~~L~V~Visaq~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 681 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----Q------------------------------------------ISSYVEVEMYGLPTD 681 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----C------------------------------------------CCEEEEEEEESSGGG
T ss_pred cceEEEEEEEEcccCCCC----C------------------------------------------CCCeEEEEEeCCCcc
Confidence 357899999999999842 1 89999999854
Q ss_pred e--eEEEeeeccC-CCCCeeeeE-EEEe-ecCCC-CeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 91 A--TVARTRVLKN-SQEPVWNEH-FNIP-LAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 91 ~--~~~~T~~~~~-~~~P~wne~-f~~~-~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
. .+.||+++++ +.||+|||+ |.|. +..+. ..|.|+|||++ +++||++.|||..|..|. ++++|.+..+
T Consensus 682 ~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g 755 (816)
T 3qr0_A 682 TVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESN 755 (816)
T ss_dssp CEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTS
T ss_pred cccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCC
Confidence 1 4579999886 699999998 9998 76554 56899999985 799999999999999884 5789977666
Q ss_pred CCCCCCceEEEEEEEec
Q 005439 165 SPPKPGASIQLELKFTP 181 (696)
Q Consensus 165 ~~~~~~g~i~l~l~~~~ 181 (696)
.+. ..+.|.+.+.+..
T Consensus 756 ~~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 756 RPL-GLASVFAHIVAKD 771 (816)
T ss_dssp CEE-EEEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEEe
Confidence 542 2477888777654
No 56
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.89 E-value=5.6e-09 Score=123.27 Aligned_cols=113 Identities=21% Similarity=0.364 Sum_probs=89.0
Q ss_pred EccEEEEEEEEeeCCCCCCCcchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 005439 15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---- 90 (696)
Q Consensus 15 ~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---- 90 (696)
..|+|.|+|++|++|+.. . +||||+|.+.+
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------------------~DPYV~V~l~g~p~d 709 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------------------VRTYVEVELFGLPGD 709 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------------------CCEEEEEEEECCTTS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------------------CCcEEEEEEEecCCC
Confidence 467899999999999841 1 89999999932
Q ss_pred -eeEEEee-eccC-CCCCeeee-EEEE-eecCCC-CeEEEEEEeCCCCCCeeeEEEecccccccCCceeEEEEEccCCCC
Q 005439 91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG 164 (696)
Q Consensus 91 -~~~~~T~-~~~~-~~~P~wne-~f~~-~~~~~~-~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~g~~~~~w~~l~~~~~ 164 (696)
..+.||+ ++++ +.||+||| +|.| .+..+. ..|.|.|+|++ +++||++.|||..|..|. +|++|.+..+
T Consensus 710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g 783 (799)
T 2zkm_X 710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESN 783 (799)
T ss_dssp CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCC
Confidence 2357999 7765 79999999 6999 776554 46899999987 899999999999998773 6889976655
Q ss_pred CCCCCCceEEEEEEEe
Q 005439 165 SPPKPGASIQLELKFT 180 (696)
Q Consensus 165 ~~~~~~g~i~l~l~~~ 180 (696)
.+. ..+.|.|.+.+.
T Consensus 784 ~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 784 MPL-TMPALFIFLEMK 798 (799)
T ss_dssp CEE-EEEEEEEEEEEE
T ss_pred CCC-CceEEEEEEEEE
Confidence 432 257777777764
No 57
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.89 E-value=2.8e-08 Score=89.21 Aligned_cols=89 Identities=16% Similarity=0.349 Sum_probs=75.0
Q ss_pred CCcEEEEEECCeeEE---Ee-eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEeccccccc-----CC
Q 005439 80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (696)
Q Consensus 80 ~dpyv~v~~~~~~~~---~T-~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~-----~g 150 (696)
.||||.|.++..... +| ...++|..|+|||+|.-.+. ....|.|.|++... +++..+.|++.+|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 899999999875544 76 66667999999999998875 46689999997655 99999999999997 35
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEe
Q 005439 151 ELISRWYDIIAPSGSPPKPGASIQLELKFT 180 (696)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~ 180 (696)
...+.|++| ++.|+|++.++|.
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 577899999 6799999999986
No 58
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.84 E-value=2.4e-08 Score=90.80 Aligned_cols=91 Identities=19% Similarity=0.389 Sum_probs=76.5
Q ss_pred CCcEEEEEECCeeE---EEe-eeccCCCCCeeeeEEEEeecCCCCeEEEEEEeCCCCCCeeeEEEeccccccc-----CC
Q 005439 80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG 150 (696)
Q Consensus 80 ~dpyv~v~~~~~~~---~~T-~~~~~~~~P~wne~f~~~~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~-----~g 150 (696)
.||||.|.++.... ++| ...++|..|+|||+|.-.+. ....|.|.|++... +++..+.|++.+|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 89999999987554 788 66677999999999998875 46689999996544 89999999999997 34
Q ss_pred ceeEEEEEccCCCCCCCCCCceEEEEEEEecC
Q 005439 151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182 (696)
Q Consensus 151 ~~~~~w~~l~~~~~~~~~~~g~i~l~l~~~~~ 182 (696)
...+.|++| ++.|+|++.++|.-.
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~e 131 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFLE 131 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECCC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEEe
Confidence 567899999 679999999999643
No 59
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.75 E-value=3.3e-08 Score=109.90 Aligned_cols=149 Identities=18% Similarity=0.050 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~ 320 (696)
......+.++|.+|+++|+|+ +| |++ +. ..+.++|+.||+|||+|+||+ +...+...+.-...
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~----tp--Yf~--p~--------~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVIC----TP--YFN--FP--------RTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEE----CS--SSC--CC--------HHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEE----Ee--ccC--CC--------HHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 467889999999999999998 33 222 21 689999999999999999997 77632221110111
Q ss_pred CcccCChH-HH-----------HhhhcCCC-cEEEecCCCCCCccchhhcccccccccCccceEEecCCCCCCCcceEEE
Q 005439 321 GVMATHDE-ET-----------KKFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF 387 (696)
Q Consensus 321 ~~~~~~~~-~~-----------~~~l~~~g-v~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~~~vAf 387 (696)
.++..... .. ...+..+| +.+... .+. .+..|.|++|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~-~~~--------------~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLW-RDG--------------DNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEE-CBT--------------TBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEE-ecC--------------CCceeEEEEEECCe--------EEE
Confidence 11110000 11 01233456 333321 111 23569999999998 999
Q ss_pred EcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh---HHHHHHHHHHHHHHhhcc
Q 005439 388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKATK 461 (696)
Q Consensus 388 vGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp---av~dl~~~F~qrWn~~~~ 461 (696)
+|+.|+...-+.- + .++.+.|.+| .+.++.+.|.+.|..+..
T Consensus 377 vGS~N~d~RS~~l---------------N-----------------~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~~ 421 (458)
T 3hsi_A 377 LTGNNLNPRAWRL---------------D-----------------AENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421 (458)
T ss_dssp EECCCCSHHHHHT---------------C-----------------EEEEEEEECTTCSSHHHHHHHHHHHHTTEEE
T ss_pred ecCCCCCcchhhh---------------C-----------------ceeEEEEeCCcHHHHHHHHHHHHHHHHhCeE
Confidence 9999998732210 1 3889999998 799999999999986543
No 60
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.47 E-value=8.1e-07 Score=100.14 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=91.8
Q ss_pred chHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCC
Q 005439 242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321 (696)
Q Consensus 242 ~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~ 321 (696)
.....+.++|.+||++|+|+.-.|.| |++ +.. . . ...+.++|++|++|||+|+||+ +..............
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~p--yf~--p~~-~-~--~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~~~a~~~ 384 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNA--TCP--PLP-R-Y--DIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYS 384 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSC--CTT--TSC-S-C--CHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CC
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccc--ccc--Ccc-c-c--hHHHHHHHHHHHhCCCcEEEEe-CCCCchHHHHHhHHH
Confidence 46889999999999999999522222 111 110 0 0 2589999999999999999997 654211100000000
Q ss_pred cccCChHH-----HHhhhcCC-----------CcEEEecCC---CCCCccchhhcccccccccCccceEEecCCCCCCCc
Q 005439 322 VMATHDEE-----TKKFFKHS-----------SVNCVLAPR---YASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNR 382 (696)
Q Consensus 322 ~~~~~~~~-----~~~~l~~~-----------gv~~~~~~~---~p~~~~~~~~~~~~~~~~rhHqK~vVID~~~~~~~~ 382 (696)
......+. ....+... ++++.-... +.. ..+.....|.|++|||++
T Consensus 385 ~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~---------~~~~~~~lHaK~~vvD~~------ 449 (506)
T 1v0w_A 385 QIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKW---------ADGHPYAQHHKLVSVDSS------ 449 (506)
T ss_dssp CCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSC---------TTSCCCCBCCEEEEETTT------
T ss_pred HHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCcccc---------ccCccccceEEEEEECCc------
Confidence 00000000 00000011 123310000 000 000023579999999998
Q ss_pred ceEEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHH-HHhhc
Q 005439 383 KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR-WRKAT 460 (696)
Q Consensus 383 ~~vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qr-Wn~~~ 460 (696)
++++|+.|+.. |. ++++.+.|++| .|.++.+.|.+. |+.+.
T Consensus 450 --~~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 450 --TFYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp --EEEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred --EEEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999944 32 24889999997 788999999975 87643
No 61
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=97.52 E-value=0.00021 Score=66.68 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCCCCCch
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 639 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~~~~~~ 639 (696)
.++.++++++|.+|+++|+|+++|| ++ ..+..+|.+|. ++||+|+|+++..+. . .
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~-~~-----------------~~i~~aL~~a~--~rGV~Vril~~~~~~--~--~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSF-TA-----------------PDIMKALVAAK--KRGVDVKIVIDERGN--T--G- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSB-CC-----------------HHHHHHHHHHH--HTTCEEEEEEESTTC--C--S-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEe-CC-----------------HHHHHHHHHHH--HCCCEEEEEEeCccc--c--c-
Confidence 5789999999999999999999988 33 26788888884 489999999996542 1 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005439 640 VQEILFWQSQTMQMMYSVVAQELREMQVD 668 (696)
Q Consensus 640 ~~~i~~~~~~ti~~~~~si~~~L~~~gi~ 668 (696)
....+.++.|+++|++
T Consensus 68 -------------~~~~~~~~~L~~~gv~ 83 (155)
T 1byr_A 68 -------------RASIAAMNYIANSGIP 83 (155)
T ss_dssp -------------HHHHHHHHHHHHTTCC
T ss_pred -------------cccHHHHHHHHHCCCe
Confidence 1223556778888984
No 62
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=97.06 E-value=0.0006 Score=66.82 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEee
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 628 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP 628 (696)
.+....++++|.+|+++|+|+. |++++ ..|+.+|.+| +++||+|+||+-
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~-y~~~~-----------------~~i~~aL~~a--a~rGV~Vrii~D 93 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCL-FAFSS-----------------PQLGRAVQLL--HQRGVRVRVITD 93 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEE-SCBCC-----------------HHHHHHHHHH--HHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhheEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCcEEEEEe
Confidence 3456789999999999999998 66655 2788899888 458999999995
No 63
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=96.68 E-value=0.0032 Score=72.64 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=93.8
Q ss_pred cCCCCCCCccchHHHHHHHHHhccc----eEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeC
Q 005439 232 LDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD 307 (696)
Q Consensus 232 l~~g~~y~~~~~f~~l~~aI~~Ak~----~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD 307 (696)
|..|+......+...+..+|.+|++ +|+|. .| +| + +..+.++|.+||++||+|+||| .
T Consensus 509 l~~sP~~~~~~i~~~i~~eI~~Ak~G~~a~I~ik----~n--~l---~--------D~~ii~aL~~As~~GV~V~LIV-R 570 (705)
T 2o8r_A 509 LLVARYNMGEAITNLIEREIENVKRGKRGYMLLK----MN--GL---Q--------DKNVITQLYRASEAGVEIDLIV-R 570 (705)
T ss_dssp CEETTTTHHHHHHHHHHHHHHHHHTTCCCEEEEE----ES--CB---C--------CHHHHHHHHHHHHTTCEEEEEE-S
T ss_pred EEECCchHHHHHHHHHHHHHHHHhcCCCCEEEEE----cC--CC---C--------CHHHHHHHHHHHHCCCeEEEEE-c
Confidence 3337766667788888999999998 99987 33 12 1 2689999999999999999998 6
Q ss_pred CCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEecCCCCCCccchhhcccccccccCccceEEe---cCCCCCCCcce
Q 005439 308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLV---DTQASGNNRKI 384 (696)
Q Consensus 308 ~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~~p~~~~~~~~~~~~~~~~rhHqK~vVI---D~~~~~~~~~~ 384 (696)
++-++. + |+ + ...++.|+- .+ +.+.. |-|+.+. |+.
T Consensus 571 GiC~L~-P-----gv---------~--~sdni~V~S--iv-------------gr~Le-h~RIy~f~~gd~~-------- 609 (705)
T 2o8r_A 571 GICCLV-P-----DM---------P--QSRNIRVTR--LV-------------DMYLE-HSRIWCFHNGGKE-------- 609 (705)
T ss_dssp SCBCSC-C-----SS---------G--GGTTEEEEE--CC-------------SSSEE-CCCEEEECGGGSC--------
T ss_pred cccccC-C-----CC---------C--CCCCeEEEe--eH-------------HHHHh-cCEEEEEECCCCc--------
Confidence 553221 1 11 0 122455531 11 11123 4588888 555
Q ss_pred EEEEcccccCCccCCCCCCCcccCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeCh-HHHHHHHHHHHHHHhhc
Q 005439 385 TAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKAT 460 (696)
Q Consensus 385 vAfvGG~dl~~~R~Dt~~H~l~d~~~~~~~~dy~n~~~~~~~~~pr~pWhDv~~~v~Gp-av~dl~~~F~qrWn~~~ 460 (696)
.+|+|+.|+...-++- -..+.+-|..| .++.|.+.|..+|....
T Consensus 610 ~~~IGSAn~m~Rnl~~--------------------------------r~Ev~~~i~d~~~~~~l~~i~~~~l~d~~ 654 (705)
T 2o8r_A 610 EVFISSADWMKRNLYN--------------------------------RIETACPVLDPTLRREIIDILEIQLRDNI 654 (705)
T ss_dssp EEEEESCCBCHHHHHT--------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEeccccchhhhhh--------------------------------eeEEEEEEcCHHHHHHHHHHHHHhhhhhh
Confidence 9999999997733331 02788888887 77888889999998643
No 64
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=96.51 E-value=0.0022 Score=63.58 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeC
Q 005439 560 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 629 (696)
Q Consensus 560 ~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~ 629 (696)
....+..+++|.+|++.|+|+. |++++ ..|+.+|.+| +++||+|+||+-.
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~-----------------~~I~~aL~~A--a~RGV~VRii~D~ 106 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTS-----------------LFLADSIKRA--LQRGVIIRIISDG 106 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCC-----------------HHHHHHHHHH--HHHTCEEEEECCT
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCC-----------------HHHHHHHHHH--HHcCCeEEEEEec
Confidence 4556778999999999999997 77765 3788999998 4589999999853
No 65
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=96.14 E-value=0.0017 Score=75.10 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHHhccc-----eEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 564 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 564 ~ayl~~I~~Ak~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
.+++++|.+|++ .|+| ++||+++. ..++.+|++| +++|++|.|+++..+
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------------~~I~~AL~~A--A~rGV~VrVLvd~~a 403 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKD----------------SRIIDSMIHA--AHNGKKVTVVVELQA 403 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------------CHHHHHHHHH--HHTTCEEEEEECTTC
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCc----------------HHHHHHHHHH--HhcCCEEEEEECCCc
Confidence 578889999997 9999 99999431 1788999988 558999999999775
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=93.88 E-value=0.04 Score=58.52 Aligned_cols=48 Identities=25% Similarity=0.152 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEE
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLv 305 (696)
+.....+.+.|.+|+++|++..|. . . -..+.+.|.++++|||+|++++
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~---~-~-------------l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPS---E-F-------------FETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECH---H-H-------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCH---H-H-------------HHHHHHHHHHHHhCCCEEEEEE
Confidence 467888999999999999998651 1 0 1478899999999999999997
No 67
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=93.46 E-value=0.085 Score=52.86 Aligned_cols=51 Identities=24% Similarity=0.079 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHhccceEEEEEEEEeeceeeeecCCCCCCCCCchhHHHHHHHHhhcCCEEEEEEeCC
Q 005439 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 308 (696)
Q Consensus 241 ~~~f~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~g~~~~l~~lL~~aA~rGV~VriLvwD~ 308 (696)
+...+.+.+.|++|+++|++..|. + .-.+|.+.|.+|++|||.|+|+++..
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~----------e-------~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS----------E-------FFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG----------G-------GHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH----------H-------HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 467889999999999999997551 1 12589999999999999999999643
No 68
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=83.29 E-value=9 Score=37.62 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=32.5
Q ss_pred eEEEeeeccCCCCCeeeeEEEEeecCCC---CeEEEEEEeCCC
Q 005439 92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131 (696)
Q Consensus 92 ~~~~T~~~~~~~~P~wne~f~~~~~~~~---~~l~i~v~d~~~ 131 (696)
..++|.|...+.+|.|+|++.+.++... ..|.|+++....
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 4578999999999999999999998753 458888876543
No 69
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=77.40 E-value=2.5 Score=44.58 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCC
Q 005439 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 632 (696)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~ 632 (696)
...|.+...++|.+|++.||+..++..- ..+...+.+| .++||+|.+++|..|+
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a--~~RGV~Vrvi~~~~~d 170 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKT--LERGVTVSLYIDKIPD 170 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHH--HHTTCEEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHH--HhCCCEEEEEECCCCC
Confidence 4789999999999999999998754321 2455566666 4589999999986654
No 70
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=72.76 E-value=21 Score=33.02 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=66.7
Q ss_pred EEEEEECCeeEEEeeeccCCCCCeeeeEEEEeecCC--------CCeEEEEEEeCCCCCCeeeEEEeccccccc-CCcee
Q 005439 83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-TGELI 153 (696)
Q Consensus 83 yv~v~~~~~~~~~T~~~~~~~~P~wne~f~~~~~~~--------~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~-~g~~~ 153 (696)
||.+.+-.-..+.|.+.+ ..+|.+|-+-++.+... ...+.+++.......-..||.+.|+|..+. ..+.+
T Consensus 45 F~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~i 123 (156)
T 2yrb_A 45 FCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGRI 123 (156)
T ss_dssp EEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSCE
T ss_pred EEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCce
Confidence 455554344445777766 77999998888887543 235788887754333589999999999986 34446
Q ss_pred EEEEEccCCCCCCCCCCceEEEEEEEec
Q 005439 154 SRWYDIIAPSGSPPKPGASIQLELKFTP 181 (696)
Q Consensus 154 ~~w~~l~~~~~~~~~~~g~i~l~l~~~~ 181 (696)
.+-.+|.+..+. ...-|.|...+++..
T Consensus 124 ~g~~~L~g~~g~-~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 124 FCTASLIGTKGD-IPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEECBSSSC-CTTSEEEEEEEEEEE
T ss_pred EEEEEEEcCCCC-cceEEEEEEEEEEec
Confidence 677788665442 135799999998754
No 71
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=70.37 E-value=20 Score=42.80 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCcEEEEEE--CCee---EEEeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeCCCC-------------CCeee
Q 005439 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVF-------------GAQII 137 (696)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~-------------~~~~i 137 (696)
.+-||++.+ ++.. ...|+.+....+|.|||.++|++.- ....|.|+||+...- ....+
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 567888776 4422 2345544447789999999998654 245689999985321 13477
Q ss_pred EEEecccccc
Q 005439 138 GTAAIPAHTI 147 (696)
Q Consensus 138 G~~~i~l~~l 147 (696)
|.+.++|-+.
T Consensus 315 g~~~~~lFd~ 324 (940)
T 2wxf_A 315 AWANLMLFDY 324 (940)
T ss_dssp EEEEEESBCT
T ss_pred EEEeeeEECC
Confidence 8888877553
No 72
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=64.17 E-value=10 Score=37.63 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhccceEEEeeeeecccccCCCccccCCccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCC
Q 005439 559 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 631 (696)
Q Consensus 559 e~sI~~ayl~~I~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p 631 (696)
...|.+-..++|++|++.|++ .++... -..+...|.+| .++||.|.|++...+
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~l----si~~e~--------------l~~l~~~L~~A--~~rGV~V~liv~~~~ 60 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIV----VTPSEF--------------FETIREDLIKT--LERGVTVSLYIDKIP 60 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEE----EECGGG--------------HHHHHHHHHHH--HHTTCEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhhhEEEE----EeCHHH--------------HHHHHHHHHHH--HHCCCEEEEEEcCCc
Confidence 367888889999999999999 333321 13567777777 569999999988543
No 73
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=62.12 E-value=32 Score=41.56 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCcEEEEEE--CC---eeEEEeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeCCCCC-----CeeeEEEecccc
Q 005439 80 SDPYVTVVV--PQ---ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-----AQIIGTAAIPAH 145 (696)
Q Consensus 80 ~dpyv~v~~--~~---~~~~~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~~~~~-----~~~iG~~~i~l~ 145 (696)
.+.||++.+ ++ +...+|+.+. ..+|.|||..+|++.- ....|.|+||+....+ ...||.+.++|-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 567888887 33 2223444333 4578899999998654 2466899999865421 347888888876
Q ss_pred cc
Q 005439 146 TI 147 (696)
Q Consensus 146 ~l 147 (696)
+.
T Consensus 454 d~ 455 (1091)
T 3hhm_A 454 DY 455 (1091)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=44.67 E-value=80 Score=37.75 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCcEEEEEE--CCeeEE--EeeeccCCCCCeeeeEEEEeecC----CCCeEEEEEEeC
Q 005439 80 SDPYVTVVV--PQATVA--RTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDD 129 (696)
Q Consensus 80 ~dpyv~v~~--~~~~~~--~T~~~~~~~~P~wne~f~~~~~~----~~~~l~i~v~d~ 129 (696)
.+-||++.+ ++.... +|..+.-+.+|.|||.++|++.- ....|.|+||+.
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 295 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCG 295 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEec
Confidence 567888765 553322 34444446789999999988654 245688999864
No 75
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=36.40 E-value=29 Score=42.03 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCcEEEEEE--CCee---EEEeeeccCCCCCeeeeEEEEeecCC----CCeEEEEEEeC
Q 005439 80 SDPYVTVVV--PQAT---VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDD 129 (696)
Q Consensus 80 ~dpyv~v~~--~~~~---~~~T~~~~~~~~P~wne~f~~~~~~~----~~~l~i~v~d~ 129 (696)
.+-||++.+ ++.. ...|+.+.-+.+|.|||.++|++.-. ...|.|+||+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 456666554 4422 12454444477899999999986653 45688999885
No 76
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.28 E-value=82 Score=27.04 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhcCCEEEEEEeCCCCccCccCCCCCCcccCChHHHHhhhcCCCcEEEe
Q 005439 285 LTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL 343 (696)
Q Consensus 285 ~~l~~lL~~aA~rGV~VriLvwD~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 343 (696)
.-+.+.+..|.+|||+|.++ |+.-..- ..++....++..||.++.
T Consensus 90 ewikdfieeakergvevfvv-ynnkddd-------------rrkeaqqefrsdgvdvrt 134 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVV-YNNKDDD-------------RRKEAQQEFRSDGVDVRT 134 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EECSCHH-------------HHHHHHHHHCCSSCEEEE
T ss_pred HHHHHHHHHHHhcCcEEEEE-ecCCCch-------------hHHHHHHHhhhcCceeee
Confidence 56888999999999999999 6754110 013556778899999873
No 77
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=20.70 E-value=90 Score=31.05 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=42.3
Q ss_pred ccCccHHHHHHHHHHHHHcCCCcEEEEEeeCCCCCC-C-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005439 599 ADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD-P-------KTNTVQEILFWQSQTMQMMYSVVAQELREMQVD 668 (696)
Q Consensus 599 ~~n~i~~~i~~~i~~a~~~~~~~~V~IvlP~~p~G~-~-------~~~~~~~i~~~~~~ti~~~~~si~~~L~~~gi~ 668 (696)
.+.+|+.+++.++++++.++.++.| +|+|..|=|. . .+-++. ..|+...-..|.+.|.++|+.
T Consensus 42 tD~~ia~~ia~~~a~~l~~~~~~~~-lv~P~i~yG~~s~~h~~fPGTisl~------~~tl~~~l~di~~sl~~~G~r 112 (254)
T 3lub_A 42 TDCILPHDIAVEAAELALSRSGVRC-MVMPPVPFGAHNPGQRELPFCIHTR------YATQQAILEDIVSSLHVQGFR 112 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCE-EECCCBCCBCCCTTTTTSTTCCBCC------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCE-EEeCCccccCCCccccCcCCeEEeC------HHHHHHHHHHHHHHHHHcCCC
Confidence 5777888888888876543213444 6788777554 2 222333 667777888888899999973
Done!