Query 005444
Match_columns 696
No_of_seqs 392 out of 3678
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 01:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 4E-139 1E-143 1231.8 54.7 688 4-694 6-808 (816)
2 2r60_A Glycosyl transferase, g 100.0 2.5E-46 8.6E-51 421.8 36.1 434 160-654 4-458 (499)
3 3fro_A GLGA glycogen synthase; 100.0 4.7E-44 1.6E-48 393.1 37.2 400 163-654 2-429 (439)
4 3c48_A Predicted glycosyltrans 100.0 6.8E-44 2.3E-48 393.7 35.8 400 162-654 19-424 (438)
5 3vue_A GBSS-I, granule-bound s 100.0 1.5E-43 5.3E-48 403.6 32.2 438 163-656 9-512 (536)
6 3okp_A GDP-mannose-dependent a 100.0 6.9E-41 2.4E-45 363.0 34.1 368 162-654 3-378 (394)
7 2qzs_A Glycogen synthase; glyc 100.0 9.2E-41 3.1E-45 374.5 33.1 430 164-654 1-475 (485)
8 2jjm_A Glycosyl transferase, g 100.0 2.7E-40 9.2E-45 360.5 35.4 358 184-654 24-384 (394)
9 1rzu_A Glycogen synthase 1; gl 100.0 7.9E-41 2.7E-45 375.0 31.5 430 164-654 1-474 (485)
10 2iw1_A Lipopolysaccharide core 100.0 1.8E-40 6.1E-45 357.6 19.8 367 164-655 1-371 (374)
11 2x6q_A Trehalose-synthase TRET 100.0 5.8E-39 2E-43 352.5 31.6 288 291-654 125-413 (416)
12 2gek_A Phosphatidylinositol ma 100.0 2.2E-39 7.5E-44 353.0 27.0 363 161-654 18-382 (406)
13 3oy2_A Glycosyltransferase B73 100.0 3E-38 1E-42 346.2 22.8 359 164-654 1-389 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 3.2E-37 1.1E-41 329.8 27.6 311 163-654 3-334 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 7.9E-34 2.7E-38 313.7 14.1 346 161-647 44-402 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 4.5E-31 1.5E-35 284.0 27.8 339 163-654 6-356 (364)
17 3nb0_A Glycogen [starch] synth 100.0 3.7E-31 1.2E-35 300.3 25.5 335 291-654 180-632 (725)
18 2hy7_A Glucuronosyltransferase 100.0 4E-32 1.4E-36 299.3 9.7 242 292-651 124-373 (406)
19 2vsy_A XCC0866; transferase, g 100.0 5.7E-29 2E-33 284.4 28.4 173 446-654 368-558 (568)
20 1uqt_A Alpha, alpha-trehalose- 100.0 1.7E-28 5.9E-33 275.6 27.0 313 291-654 122-453 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 3E-29 1E-33 270.5 18.0 284 280-652 86-373 (375)
22 1vgv_A UDP-N-acetylglucosamine 100.0 1.7E-28 5.8E-33 265.7 16.1 292 280-655 77-376 (384)
23 2bfw_A GLGA glycogen synthase; 100.0 2.1E-27 7.1E-32 234.0 20.7 187 409-640 2-200 (200)
24 3qhp_A Type 1 capsular polysac 99.9 2.4E-26 8.1E-31 219.8 18.2 163 457-647 2-166 (166)
25 3t5t_A Putative glycosyltransf 99.9 4E-25 1.4E-29 246.6 27.4 320 281-653 137-471 (496)
26 1v4v_A UDP-N-acetylglucosamine 99.9 9.2E-25 3.1E-29 236.2 15.5 269 291-653 90-362 (376)
27 2xci_A KDO-transferase, 3-deox 99.9 2.9E-23 9.8E-28 226.1 21.3 206 355-640 149-365 (374)
28 2f9f_A First mannosyl transfer 99.9 7.5E-24 2.6E-28 205.8 13.8 151 454-630 20-173 (177)
29 3otg_A CALG1; calicheamicin, T 99.8 5E-20 1.7E-24 201.2 22.0 162 455-653 241-408 (412)
30 3rhz_A GTF3, nucleotide sugar 99.8 1.6E-19 5.4E-24 193.9 19.9 247 290-649 72-330 (339)
31 3s2u_A UDP-N-acetylglucosamine 99.8 9.4E-18 3.2E-22 181.9 27.3 345 162-654 1-357 (365)
32 2iyf_A OLED, oleandomycin glyc 99.8 5.9E-18 2E-22 186.3 25.9 162 455-653 231-399 (430)
33 3tsa_A SPNG, NDP-rhamnosyltran 99.8 8.4E-19 2.9E-23 190.5 14.6 162 455-652 217-387 (391)
34 4fzr_A SSFS6; structural genom 99.8 1.4E-18 4.8E-23 189.5 14.8 159 455-650 226-397 (398)
35 3dzc_A UDP-N-acetylglucosamine 99.7 1.2E-17 4E-22 183.2 17.3 290 276-651 98-393 (396)
36 3ia7_A CALG4; glycosysltransfe 99.7 8.9E-17 3.1E-21 174.4 20.7 161 455-653 230-398 (402)
37 3oti_A CALG3; calicheamicin, T 99.7 8.8E-17 3E-21 175.4 20.5 157 455-652 231-396 (398)
38 3ot5_A UDP-N-acetylglucosamine 99.7 4E-17 1.4E-21 179.5 17.6 287 276-651 101-391 (403)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 4.7E-15 1.6E-19 162.2 26.6 161 455-653 246-413 (415)
40 2p6p_A Glycosyl transferase; X 99.7 3.8E-15 1.3E-19 161.4 22.7 156 456-652 210-378 (384)
41 2c4m_A Glycogen phosphorylase; 99.6 9.6E-15 3.3E-19 168.6 13.9 330 292-653 289-717 (796)
42 2yjn_A ERYCIII, glycosyltransf 99.6 6.4E-14 2.2E-18 155.1 18.9 157 457-653 268-435 (441)
43 2gj4_A Glycogen phosphorylase, 99.5 1.1E-13 3.9E-18 160.2 19.7 232 351-610 429-710 (824)
44 1l5w_A Maltodextrin phosphoryl 99.5 4E-14 1.4E-18 163.4 15.7 332 292-654 299-729 (796)
45 4hwg_A UDP-N-acetylglucosamine 99.5 1.5E-13 5.2E-18 149.9 14.0 283 278-652 83-374 (385)
46 3h4t_A Glycosyltransferase GTF 99.5 2E-12 6.9E-17 141.6 22.0 156 455-653 220-382 (404)
47 2iya_A OLEI, oleandomycin glyc 99.5 1.6E-11 5.4E-16 134.8 27.7 161 455-653 254-421 (424)
48 1iir_A Glycosyltransferase GTF 99.3 2.4E-11 8.4E-16 133.2 18.8 153 456-651 238-398 (415)
49 4amg_A Snogd; transferase, pol 99.3 1.1E-11 3.9E-16 134.2 15.2 158 455-651 236-398 (400)
50 3q3e_A HMW1C-like glycosyltran 99.3 4.4E-11 1.5E-15 135.8 19.2 186 449-659 433-628 (631)
51 1rrv_A Glycosyltransferase GTF 99.3 7.8E-11 2.7E-15 129.1 19.8 136 456-633 237-382 (416)
52 2o6l_A UDP-glucuronosyltransfe 99.1 6.1E-10 2.1E-14 106.5 11.0 133 456-628 21-162 (170)
53 4gyw_A UDP-N-acetylglucosamine 98.0 0.00011 3.8E-09 86.2 19.3 183 445-654 513-704 (723)
54 1ygp_A Yeast glycogen phosphor 98.0 0.00018 6E-09 83.6 19.1 142 450-600 588-761 (879)
55 2vch_A Hydroquinone glucosyltr 98.0 0.0038 1.3E-07 69.5 29.1 65 545-614 351-427 (480)
56 2c1x_A UDP-glucose flavonoid 3 98.0 0.00074 2.5E-08 74.8 23.0 94 525-634 324-425 (456)
57 2pq6_A UDP-glucuronosyl/UDP-gl 97.9 0.005 1.7E-07 68.5 29.3 151 456-634 295-452 (482)
58 2acv_A Triterpene UDP-glucosyl 97.8 0.0087 3E-07 66.3 27.3 135 455-614 275-423 (463)
59 3hbf_A Flavonoid 3-O-glucosylt 97.7 0.0027 9.3E-08 70.2 21.1 145 456-634 273-427 (454)
60 1psw_A ADP-heptose LPS heptosy 97.5 0.0039 1.3E-07 65.7 19.1 101 456-580 180-286 (348)
61 3hbm_A UDP-sugar hydrolase; PS 97.1 0.01 3.5E-07 61.4 16.4 94 457-581 158-251 (282)
62 3tov_A Glycosyl transferase fa 93.8 0.21 7.1E-06 52.9 10.0 102 454-580 182-286 (349)
63 2jzc_A UDP-N-acetylglucosamine 91.1 0.18 6E-06 50.2 4.6 65 541-613 123-196 (224)
64 2gt1_A Lipopolysaccharide hept 90.6 0.69 2.4E-05 47.9 9.0 99 456-580 178-278 (326)
65 3l7i_A Teichoic acid biosynthe 80.8 13 0.00046 42.9 13.9 64 542-614 608-681 (729)
66 1xv5_A AGT, DNA alpha-glucosyl 78.3 51 0.0017 31.9 27.4 163 459-644 199-391 (401)
67 3h5i_A Response regulator/sens 68.5 57 0.0019 28.0 11.9 108 488-614 5-122 (140)
68 4g65_A TRK system potassium up 67.7 79 0.0027 34.3 15.0 136 459-614 211-365 (461)
69 3to5_A CHEY homolog; alpha(5)b 64.6 61 0.0021 28.7 11.2 110 488-615 12-132 (134)
70 3kht_A Response regulator; PSI 64.6 60 0.002 27.9 11.2 111 488-615 5-127 (144)
71 2pln_A HP1043, response regula 64.4 49 0.0017 28.2 10.5 106 487-614 17-131 (137)
72 1uan_A Hypothetical protein TT 56.3 37 0.0013 33.1 8.9 24 276-302 82-105 (227)
73 2zay_A Response regulator rece 55.4 99 0.0034 26.4 11.5 110 487-615 7-127 (147)
74 2dvz_A BUGE, putative exported 55.3 1.5E+02 0.0053 30.2 13.8 149 458-632 116-281 (314)
75 3heb_A Response regulator rece 54.4 1.1E+02 0.0036 26.5 13.2 109 489-614 5-133 (152)
76 2f5x_A BUGD; periplasmic bindi 53.7 1.4E+02 0.0049 30.4 13.2 148 459-632 113-277 (312)
77 1k68_A Phytochrome response re 52.8 1E+02 0.0035 25.8 13.2 109 489-614 3-129 (140)
78 3cg4_A Response regulator rece 52.7 1.1E+02 0.0036 26.0 11.9 110 487-615 6-126 (142)
79 3grc_A Sensor protein, kinase; 52.6 1.1E+02 0.0036 26.0 11.9 109 488-615 6-126 (140)
80 4b4o_A Epimerase family protei 51.9 6.2 0.00021 39.8 2.3 33 164-225 1-33 (298)
81 3h1g_A Chemotaxis protein CHEY 49.8 1.1E+02 0.0039 25.5 12.5 108 489-614 6-125 (129)
82 1k66_A Phytochrome response re 49.4 1.2E+02 0.0041 25.7 12.5 110 488-614 6-136 (149)
83 3ius_A Uncharacterized conserv 47.7 6.4 0.00022 39.3 1.6 35 161-225 3-37 (286)
84 2ixd_A LMBE-related protein; h 47.6 55 0.0019 32.3 8.5 25 275-302 83-107 (242)
85 4e7p_A Response regulator; DNA 45.4 98 0.0033 26.8 9.2 75 540-614 55-138 (150)
86 2qpq_A Protein BUG27; alpha/be 42.1 1.4E+02 0.0047 30.3 10.8 148 459-632 104-268 (301)
87 4egb_A DTDP-glucose 4,6-dehydr 41.5 1.1E+02 0.0037 31.0 10.0 21 203-225 39-59 (346)
88 4gi5_A Quinone reductase; prot 41.1 24 0.00082 35.9 4.7 36 163-216 22-57 (280)
89 2j48_A Two-component sensor ki 39.6 98 0.0033 24.8 7.8 105 490-613 3-115 (119)
90 2phj_A 5'-nucleotidase SURE; S 39.0 1.7E+02 0.0057 29.1 10.4 38 163-227 1-38 (251)
91 2qr3_A Two-component system re 38.7 1.4E+02 0.0049 25.0 9.1 107 489-614 4-124 (140)
92 4dad_A Putative pilus assembly 38.2 98 0.0034 26.5 8.0 66 550-615 67-140 (146)
93 3lkv_A Uncharacterized conserv 37.6 3.2E+02 0.011 27.1 14.9 113 472-600 126-243 (302)
94 3n53_A Response regulator rece 36.7 1.9E+02 0.0065 24.3 11.0 106 489-614 4-120 (140)
95 3kcn_A Adenylate cyclase homol 36.1 2.1E+02 0.0071 24.6 12.7 107 488-614 4-121 (151)
96 1qkk_A DCTD, C4-dicarboxylate 34.6 2E+02 0.0069 24.7 9.6 107 489-614 4-119 (155)
97 1rcu_A Conserved hypothetical 34.6 24 0.00083 33.9 3.3 66 544-612 112-191 (195)
98 2vzf_A NADH-dependent FMN redu 34.4 33 0.0011 32.4 4.3 37 162-216 1-38 (197)
99 3gt7_A Sensor protein; structu 33.5 2.3E+02 0.008 24.4 12.3 112 488-618 7-129 (154)
100 3eul_A Possible nitrate/nitrit 33.2 2.3E+02 0.0079 24.2 11.1 111 487-614 14-133 (152)
101 1j9j_A Stationary phase surviV 32.9 2.6E+02 0.009 27.6 10.7 35 289-323 83-128 (247)
102 2qvg_A Two component response 32.9 2.2E+02 0.0075 23.9 11.8 108 488-612 7-131 (143)
103 3lte_A Response regulator; str 31.8 2.2E+02 0.0074 23.5 10.7 108 488-614 6-123 (132)
104 2rdm_A Response regulator rece 31.8 2.2E+02 0.0074 23.5 11.7 108 488-614 5-121 (132)
105 1t2a_A GDP-mannose 4,6 dehydra 31.7 93 0.0032 32.0 7.7 20 203-226 39-58 (375)
106 2qxy_A Response regulator; reg 30.9 2.4E+02 0.0081 23.7 9.3 108 488-614 4-119 (142)
107 1i3c_A Response regulator RCP1 30.7 2.5E+02 0.0087 23.9 12.6 110 488-614 8-135 (149)
108 2e6c_A 5'-nucleotidase SURE; S 30.6 2.5E+02 0.0086 27.7 10.1 35 289-323 84-129 (244)
109 3m2p_A UDP-N-acetylglucosamine 30.6 21 0.00073 35.9 2.3 35 162-225 1-35 (311)
110 2qsj_A DNA-binding response re 30.1 2.4E+02 0.0083 24.1 9.3 110 488-615 3-123 (154)
111 2qzj_A Two-component response 29.9 2.5E+02 0.0085 23.6 11.4 108 488-614 4-119 (136)
112 3jte_A Response regulator rece 29.6 2.5E+02 0.0086 23.5 12.3 107 489-614 4-121 (143)
113 3l4b_C TRKA K+ channel protien 29.4 78 0.0027 30.0 6.1 30 291-320 64-96 (218)
114 3cio_A ETK, tyrosine-protein k 29.0 1.6E+02 0.0055 29.6 8.7 26 80-108 21-46 (299)
115 3lua_A Response regulator rece 28.8 1.8E+02 0.006 24.6 7.9 108 488-614 4-125 (140)
116 2rjn_A Response regulator rece 28.3 2.8E+02 0.0096 23.7 9.5 108 488-614 7-124 (154)
117 2l2q_A PTS system, cellobiose- 27.7 67 0.0023 27.3 4.7 35 161-216 2-36 (109)
118 3cnb_A DNA-binding response re 27.7 2.7E+02 0.0091 23.2 12.6 110 488-615 8-129 (143)
119 1d4a_A DT-diaphorase, quinone 27.4 57 0.002 32.7 4.9 37 162-216 1-37 (273)
120 2duw_A Putative COA-binding pr 27.4 3.1E+02 0.011 24.2 9.5 46 151-225 4-49 (145)
121 3ew7_A LMO0794 protein; Q8Y8U8 26.6 28 0.00097 32.7 2.3 19 203-225 15-33 (221)
122 3tqq_A Methionyl-tRNA formyltr 26.6 1.1E+02 0.0036 31.6 6.8 34 290-326 78-112 (314)
123 3hzh_A Chemotaxis response reg 26.5 3.1E+02 0.011 23.6 10.7 75 540-614 70-155 (157)
124 3nhm_A Response regulator; pro 26.3 2.7E+02 0.0093 22.9 12.4 76 540-615 36-121 (133)
125 3ilh_A Two component response 26.0 2.9E+02 0.0099 23.1 11.8 111 487-614 8-137 (146)
126 3p0r_A Azoreductase; structura 25.5 53 0.0018 31.4 4.1 39 162-216 3-43 (211)
127 3slg_A PBGP3 protein; structur 25.1 67 0.0023 33.0 5.1 20 203-226 39-59 (372)
128 3h2s_A Putative NADH-flavin re 25.0 31 0.0011 32.5 2.3 19 203-225 15-33 (224)
129 1y81_A Conserved hypothetical 24.7 3E+02 0.01 24.2 8.7 19 203-225 32-50 (138)
130 4fle_A Esterase; structural ge 24.6 3.8E+02 0.013 24.0 10.8 32 290-322 60-91 (202)
131 2cp8_A NEXT to BRCA1 gene 1 pr 24.6 64 0.0022 24.3 3.3 20 104-123 2-21 (54)
132 3hdv_A Response regulator; PSI 24.5 3E+02 0.01 22.8 11.4 108 488-614 7-125 (136)
133 3i42_A Response regulator rece 24.4 2.9E+02 0.0099 22.5 11.2 107 489-614 4-120 (127)
134 2gkg_A Response regulator homo 24.3 2.8E+02 0.0096 22.3 11.1 106 489-614 6-123 (127)
135 2fzv_A Putative arsenical resi 24.0 45 0.0015 33.8 3.3 38 161-216 56-93 (279)
136 1kjq_A GART 2, phosphoribosylg 24.0 3E+02 0.01 28.2 10.1 18 203-224 25-42 (391)
137 3rqi_A Response regulator prot 23.9 2.6E+02 0.0088 25.2 8.5 108 488-614 7-123 (184)
138 3cg0_A Response regulator rece 23.7 3.1E+02 0.011 22.7 11.9 109 487-614 8-126 (140)
139 1l5x_A SurviVal protein E; str 23.1 3.7E+02 0.013 27.0 9.9 38 164-228 1-38 (280)
140 1jwq_A N-acetylmuramoyl-L-alan 23.0 64 0.0022 30.2 4.0 26 195-225 28-54 (179)
141 4h62_K Mediator of RNA polymer 22.7 61 0.0021 21.7 2.5 23 125-147 10-32 (40)
142 3dhn_A NAD-dependent epimerase 21.8 33 0.0011 32.5 1.7 20 203-226 19-38 (227)
143 2q62_A ARSH; alpha/beta, flavo 21.7 88 0.003 30.9 4.9 47 152-216 22-69 (247)
144 2q5c_A NTRC family transcripti 21.7 4E+02 0.014 25.0 9.5 97 515-614 84-181 (196)
145 1iuk_A Hypothetical protein TT 21.7 2.4E+02 0.0082 24.9 7.4 46 151-225 4-49 (140)
146 1p2f_A Response regulator; DRR 21.6 4.2E+02 0.015 24.2 9.8 107 489-616 3-117 (220)
147 2yw3_A 4-hydroxy-2-oxoglutarat 21.6 3.9E+02 0.013 25.2 9.5 92 514-614 95-198 (207)
148 2x4g_A Nucleoside-diphosphate- 21.4 46 0.0016 33.7 2.8 20 203-226 28-47 (342)
149 3gem_A Short chain dehydrogena 21.1 1.2E+02 0.0041 29.7 5.8 19 203-225 42-60 (260)
150 3vps_A TUNA, NAD-dependent epi 20.7 50 0.0017 32.9 2.9 21 203-227 22-42 (321)
151 3g17_A Similar to 2-dehydropan 20.6 43 0.0015 33.8 2.4 18 204-225 17-34 (294)
152 3lcr_A Tautomycetin biosynthet 20.6 4.2E+02 0.014 26.3 10.1 39 275-314 131-169 (319)
153 2r6j_A Eugenol synthase 1; phe 20.6 56 0.0019 32.8 3.3 20 203-226 26-45 (318)
154 3hn2_A 2-dehydropantoate 2-red 20.5 49 0.0017 33.7 2.8 19 203-225 16-34 (312)
155 3i83_A 2-dehydropantoate 2-red 20.5 41 0.0014 34.4 2.2 19 203-225 16-34 (320)
156 3hdg_A Uncharacterized protein 20.5 3.7E+02 0.012 22.2 11.1 108 488-614 7-123 (137)
157 3t6k_A Response regulator rece 20.1 3.8E+02 0.013 22.3 12.2 107 489-614 5-122 (136)
158 2hqr_A Putative transcriptiona 20.0 3.2E+02 0.011 25.2 8.5 94 512-616 13-115 (223)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=3.5e-139 Score=1231.78 Aligned_cols=688 Identities=69% Similarity=1.163 Sum_probs=641.2
Q ss_pred CCCCCccchhhhhHHHHhhcHHHHHHHHHHHHhcCccccchhchHHHHhhhcCCccccccccCCchHHHHHHhh------
Q 005444 4 PKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQ------ 77 (696)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 77 (696)
++|+|++||+|||+++|++|||+|++|||||+++||++|++|+|++||+++.+ .++.++.+|+||++|++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (816)
T 3s28_A 6 RMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIVLP 83 (816)
T ss_dssp ---------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEECS
T ss_pred cccccchhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--hhhcccccCcHHHHHHhhhheeecC
Confidence 79999999999999999999999999999999999999999999999999873 4678999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 005444 78 -------------------------------------------------------------------------------- 77 (696)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (696)
T Consensus 84 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (816)
T 3s28_A 84 PWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLN 163 (816)
T ss_dssp SEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHHH
T ss_pred CeEEEEEcCCCcceEEEEEEhhhCceeeecHHHHHHhHHHhcCCCCCCCCceEEeccccccCCCCCCCcccccCcHHHHH
Confidence
Q ss_pred -----------------------------hhhhccccCCHHHHHHHHHHHHHHhcCCCCCCCchhHHHHhhhcCCccccC
Q 005444 78 -----------------------------LLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKGWG 128 (696)
Q Consensus 78 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (696)
+|||||||+|+++|+++|++|++||+++|+||||++|+++||+||||||||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (816)
T 3s28_A 164 RHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243 (816)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCSC
T ss_pred HHHHhhhcCChhhhHHHHHHHHHcccCCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCcchHHHHhcCCCceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 005444 129 DTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRI 208 (696)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L 208 (696)
|||+||+|||++|+|+|++|||++||+|++|+||+|||++||+|||++|.+++|.||||||++||+|||||||++|+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L 323 (816)
T 3s28_A 244 DNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRI 323 (816)
T ss_dssp SBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccHHHHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCccceeEEEeCCCCCCCCCccccceeeecCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHH
Q 005444 209 KRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAE 288 (696)
Q Consensus 209 ~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~ 288 (696)
+++||+|+|+|+|+|+.++++.|+.|.++.+.+.++++++|+|+|+++.++++++|++++.+|+|+..|+..+...+...
T Consensus 324 ~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~ 403 (816)
T 3s28_A 324 KQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKE 403 (816)
T ss_dssp HHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888999999999999999998888888777
Q ss_pred hCCCCeEEEEeCCCchHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccH
Q 005444 289 LQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTY 368 (696)
Q Consensus 289 ~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~ 368 (696)
..++|||||+|++.+++++.++++++|+|+|+|.|+++..++..++.+|..+...|++.+++.+|..+++.||.|||+|.
T Consensus 404 ~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~ 483 (816)
T 3s28_A 404 LNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483 (816)
T ss_dssp CSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCH
T ss_pred cCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCH
Confidence 67799999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccc
Q 005444 369 QEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 448 (696)
Q Consensus 369 ~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 448 (696)
++++.+++.+++|.++.+|++|++|++++|++++++|+.|||||+|.+.|.|......+....++.+++.++++.+.++.
T Consensus 484 ~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~ 563 (816)
T 3s28_A 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEH 563 (816)
T ss_dssp HHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTE
T ss_pred HHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777888899999999999999
Q ss_pred cCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcE
Q 005444 449 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 528 (696)
Q Consensus 449 ~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V 528 (696)
+|++.++++++|+|+||+++.||++.|++|++++.+.+++++|+|+|+|++ ..+.++++.++.+.++++++++++.++|
T Consensus 564 lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~~V 642 (816)
T 3s28_A 564 LCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNGQF 642 (816)
T ss_dssp ESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBBBE
T ss_pred hcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCc-ccccchhhHHHHHHHHHHHHHcCCCCcE
Confidence 999888999999999999999999999999999988778999999999987 6788899999999999999999999999
Q ss_pred EEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHH
Q 005444 529 RWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAE 608 (696)
Q Consensus 529 ~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~ 608 (696)
+|+|++.+.++.+++++++++++|+||+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|++++|+|++++++
T Consensus 643 ~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~ 722 (816)
T 3s28_A 643 RWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAAD 722 (816)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHH
T ss_pred EEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHH
Confidence 99998888888899999999668999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhHHhcHHHHHHHHhHHhHhhhhccccccccc
Q 005444 609 LMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVKSV 688 (696)
Q Consensus 609 ~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (696)
+|.++++++..|++.+++|+++|++++.++|||+.++++++++|+.|+||+++++++|++++||+||||+|+|||||++|
T Consensus 723 aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~~~ 802 (816)
T 3s28_A 723 TLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAV 802 (816)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHHHS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHhhhhHHhcC
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 005444 689 PLASEN 694 (696)
Q Consensus 689 ~~~~~~ 694 (696)
|+++|+
T Consensus 803 ~~~~~~ 808 (816)
T 3s28_A 803 PLAQDD 808 (816)
T ss_dssp CCCCC-
T ss_pred CCccch
Confidence 999995
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=2.5e-46 Score=421.78 Aligned_cols=434 Identities=29% Similarity=0.495 Sum_probs=313.9
Q ss_pred CCceeEEEEEccccccCCcc--cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccc
Q 005444 160 LPMVFNVVILSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQR 237 (696)
Q Consensus 160 ~p~~~rI~iis~h~~~~~~~--~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~ 237 (696)
+++.|||++++++++|.... +.+.|..||.+.++. +|+++|+++||+|+ |+|..........+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhh
Confidence 34568999999999885432 245578899999999 66666799999999 88865332111122222
Q ss_pred eeeecCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCc
Q 005444 238 LERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT 317 (696)
Q Consensus 238 ~e~i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip 317 (696)
.+......+++++++|..... +..+..+|.++..+...+.+.+.+. ..+|||||+|++..++++.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCc
Confidence 333312347899999875432 2233445666655555555555442 3589999999877777888888889999
Q ss_pred EEEEecCCCccCCC---CCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccce
Q 005444 318 QCTIAHALEKTKYP---DSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 394 (696)
Q Consensus 318 ~v~t~H~l~~~~~~---~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~ 394 (696)
+|++.|+....... ........+...+++......++..++.+|.||++|...++...+..
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~---------------- 209 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD---------------- 209 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG----------------
T ss_pred EEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhh----------------
Confidence 99999986432110 00100011122222222334567789999999999998765322110
Q ss_pred eecc-c-cc-CCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccC-----CCCCCCCCEEEEEccc
Q 005444 395 VVHG-I-DV-FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG-----TLSDRSKPIVFSMARL 466 (696)
Q Consensus 395 ~~~g-i-~~-~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g-----~l~~~~k~iIl~vGRL 466 (696)
..| + +. ...++.|||||+|.+.|.|......+ . ..++.+| + ++++++|+|+||+
T Consensus 210 -~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~-~--------------~~r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 210 -LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIK-A--------------KITKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp -GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHH-H--------------HHHHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred -cccccccccCCCCeEEECCCcChhhcCccchhhhH-H--------------HHHHHhccccccc--CCCCcEEEEeecC
Confidence 001 1 00 25689999999999988876431110 0 0112234 3 5678899999999
Q ss_pred cccCChHHHHHHHHHhhccCCC-eEEEEEeCccCCCCC---cchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhH
Q 005444 467 DHVKNMTGLVECYGKNSQLREL-VNLVVVAGYIDVNKS---KDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGE 542 (696)
Q Consensus 467 ~~~Kgi~~Llea~~~l~~~~~~-~~LvIvG~g~~~~~~---~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~e 542 (696)
.+.||++.+++|+..+.+..++ +.|+|+|++..+..+ .+.++.++.++++++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred ccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC----CCCHHH
Confidence 9999999999999988765444 589999983321000 01234455788999999999999999999 677889
Q ss_pred HHHHHHccc----cEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhh
Q 005444 543 LYRYIADTK----GAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCK 618 (696)
Q Consensus 543 l~~~la~aa----dvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~ 618 (696)
+..+|+. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---- 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---- 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----
T ss_pred HHHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH----
Confidence 9999995 9 999999999999999999999999999999999999999999999999999999999997776
Q ss_pred cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 619 ENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 619 ~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+|++.+++|++++++++.++|||+.+++++.++|+.
T Consensus 423 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 458 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQE 458 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999999999999998889999999999999874
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.7e-44 Score=393.08 Aligned_cols=400 Identities=17% Similarity=0.180 Sum_probs=298.5
Q ss_pred eeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCc---------
Q 005444 163 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--------- 233 (696)
Q Consensus 163 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~--------- 233 (696)
.|||++++++.+| +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 5899999988774 35799999999 66667799999999 9987654432110
Q ss_pred -cccceeeecCCCceEEEEecccCcccccccccccCCCcc-cHH-------HHHHHHHHHHHHHh--CCCCeEEEEeCCC
Q 005444 234 -CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWP-YLE-------TFTEDVGSEITAEL--QGFPDFIIGNYSD 302 (696)
Q Consensus 234 -~~~~~e~i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p-~l~-------~f~~~~~~~i~~~~--~~~pDvIh~h~~~ 302 (696)
...... .....++.+++++. .. ..+..+++ +.. .|...+.+.+...+ ..+|||||+|++.
T Consensus 62 ~~~~~~~-~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVS-YEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEE-EEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred ccceeee-eccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchh
Confidence 000000 00224688888876 21 22333333 222 23333334333321 6799999999988
Q ss_pred chHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhccccccccc
Q 005444 303 GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYE 382 (696)
Q Consensus 303 ~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~ 382 (696)
.++++.++++..++|+|++.|+.....++........+.. ..+......+...++.||.|+++|....+. ..+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~-- 206 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGF-- 206 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHH--
T ss_pred hhhhHHHHhhccCCCEEEEecccccccCchHHhCcccccc-ccccceeeHhhhhhhhccEEEecCHHHHHH---Hhhh--
Confidence 8888888888899999999999864332211000000000 001122245677899999999999987652 1110
Q ss_pred ccccccccccceeecccccCCCcEEEecCCCcCCCCCCCc----hHHHHHhhhhcchhhhcCCccccccccCCCCCCCCC
Q 005444 383 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS----EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 458 (696)
Q Consensus 383 ~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~----~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~ 458 (696)
++....++.+||||+|.+.|.|.. ....+ ...++.+|+ +++ +
T Consensus 207 ----------------~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 207 ----------------FRNFEGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG-V 252 (439)
T ss_dssp ----------------HGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-E
T ss_pred ----------------hhhcCCceeecCCCCCchhcCcccccchhhhhH---------------HHHHHHcCC--CCC-c
Confidence 123378999999999999988762 11111 112344666 555 9
Q ss_pred EEEEEcccc-ccCChHHHHHHHHHhhccC--CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecccc
Q 005444 459 IVFSMARLD-HVKNMTGLVECYGKNSQLR--ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 535 (696)
Q Consensus 459 iIl~vGRL~-~~Kgi~~Llea~~~l~~~~--~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~ 535 (696)
+|+|+||+. +.||++.+++|+..+.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g--- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE--- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS---
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh----------hHHHHHHHHHhhcC--CEEEEcC---
Confidence 999999999 9999999999999998876 8999999999875 33478899999988 7788898
Q ss_pred ccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 536 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 536 ~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 -~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 318 -MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp -CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH-
Confidence 7788999999995 999999999999999999999999999999999999999887 999999999999999998777
Q ss_pred hhhc-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 616 KCKE-NPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 616 ~l~~-dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+ |++.+++|++++++++ ++|||+.+++++.++|+.
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 429 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTG 429 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred ---hcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH
Confidence 6 8999999999999999 889999999999999874
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=6.8e-44 Score=393.75 Aligned_cols=400 Identities=21% Similarity=0.318 Sum_probs=292.8
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeee
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 241 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i 241 (696)
.+|||++++.+.+|.. ..|.+..||.+.++. +|+++|+++||+|+ |+|....... ......
T Consensus 19 ~mmkIl~i~~~~~p~~--~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~~ 79 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQ--QPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVRV 79 (438)
T ss_dssp CCCEEEEECTTSCTTC--C-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEEE
T ss_pred chheeeeEEeeccccc--cCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCCCC-----cccccc
Confidence 4689999999887632 234457899999999 66666799999999 8886532110 011111
Q ss_pred cCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEEE
Q 005444 242 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTI 321 (696)
Q Consensus 242 ~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t 321 (696)
..++.+++++.....+ .++..++.++..|...+.+..... ..+||+||+|++..++++.++++..++|+|++
T Consensus 80 --~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~ 151 (438)
T 3c48_A 80 --AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHT 151 (438)
T ss_dssp --ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhc-cCCCCEEEeCCccHHHHHHHHHHHcCCCEEEE
Confidence 1368888888654321 222334445555555444442222 22499999998777777778888889999999
Q ss_pred ecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeeccccc
Q 005444 322 AHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 401 (696)
Q Consensus 322 ~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~ 401 (696)
.|+............ ..... ......+...++.+|.|+++|....+...+. .|+
T Consensus 152 ~h~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~-- 205 (438)
T 3c48_A 152 AHTLAAVKNSYRDDS-DTPES----EARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDA-- 205 (438)
T ss_dssp CSSCHHHHSCC-----CCHHH----HHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCC--
T ss_pred ecCCccccccccccc-CCcch----HHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH-------------------hCC--
Confidence 998743221100000 00000 0111235667899999999998876532111 122
Q ss_pred CCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHH
Q 005444 402 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 481 (696)
Q Consensus 402 ~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~ 481 (696)
...++.+||||+|.+.|.|...... ...++.+|+ ++++++|+++||+.+.||++.+++|+..
T Consensus 206 ~~~k~~vi~ngvd~~~~~~~~~~~~----------------~~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 267 (438)
T 3c48_A 206 DPDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVAA 267 (438)
T ss_dssp CGGGEEECCCCCCTTTSCCC----C----------------HHHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHHH
T ss_pred ChhheEEecCCccccccCCcccchh----------------hhhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHHH
Confidence 2578999999999998877533210 001233565 5678899999999999999999999999
Q ss_pred hhccCC--CeEEEEEeC----ccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEE
Q 005444 482 NSQLRE--LVNLVVVAG----YIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFV 555 (696)
Q Consensus 482 l~~~~~--~~~LvIvG~----g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV 555 (696)
+.+..| +++|+|+|+ |.. .+.++++++++++.++|.|+| .++.+++..+++. +|++|
T Consensus 268 l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v 330 (438)
T 3c48_A 268 LFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVA 330 (438)
T ss_dssp HHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEE
T ss_pred HHhhCCCcceEEEEEeCCCCCCcH------------HHHHHHHHHHcCCCCcEEEcC----CCChHHHHHHHHh-CCEEE
Confidence 987766 899999998 433 567889999999999999999 6778899999995 99999
Q ss_pred eCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 005444 556 QPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI 635 (696)
Q Consensus 556 ~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v 635 (696)
+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++++
T Consensus 331 ~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~ 406 (438)
T 3c48_A 331 VPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHA 406 (438)
T ss_dssp ECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred ECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776 79999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q 005444 636 YERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 636 ~~~ysw~~~a~~l~~ly~~ 654 (696)
.+ |||+.+++++.++|+.
T Consensus 407 ~~-~s~~~~~~~~~~~~~~ 424 (438)
T 3c48_A 407 RT-FSWAATAAQLSSLYND 424 (438)
T ss_dssp HH-HHHHHHHHHHHHHHHH
T ss_pred Hh-CCHHHHHHHHHHHHHH
Confidence 77 9999999999999864
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=1.5e-43 Score=403.58 Aligned_cols=438 Identities=14% Similarity=0.142 Sum_probs=284.1
Q ss_pred eeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeee-
Q 005444 163 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV- 241 (696)
Q Consensus 163 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i- 241 (696)
-|||+++|...+|- -.|||...++. .|+++|+++||+|. |+++.++.-....-......+
T Consensus 9 ~MkIl~vs~E~~P~-------~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~~ 69 (536)
T 3vue_A 9 HMNVVFVGAEMAPW-------SKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEIK 69 (536)
T ss_dssp CCEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEEE
T ss_pred CcEEEEEEEeccch-------hccCcHHHHHH--------HHHHHHHHcCCeEE----EEecCchhhhhhcccceEEEEE
Confidence 58999999988753 36899999998 56666799999999 998876543221000000000
Q ss_pred -cC-CCceEEEEecccCccc-ccc--ccccc------CCCc---------ccHHHHHH--HHHHHHHHHh----------
Q 005444 242 -SG-TEHTHILRVPFRSEKG-ILR--QWISR------FDVW---------PYLETFTE--DVGSEITAEL---------- 289 (696)
Q Consensus 242 -~~-~~~v~I~rvp~~~~~~-~~~--~wisr------~~i~---------p~l~~f~~--~~~~~i~~~~---------- 289 (696)
.+ ...+.+++.+...-.- ++. .+..| ..++ ...++|+. .+.-.+...+
T Consensus 70 ~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~ 149 (536)
T 3vue_A 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKG 149 (536)
T ss_dssp ETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCS
T ss_pred ecCceEEEEEEEEEECCceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhc
Confidence 00 0112222221110000 000 00001 0111 11222221 1122222221
Q ss_pred -CCCCeEEEEeCCCchHHHHHHhhc-------CCCcEEEEecCCCccCC-CC-----CCccHhhhh--------hhhhcc
Q 005444 290 -QGFPDFIIGNYSDGNLVASLLAYK-------MGITQCTIAHALEKTKY-PD-----SDIYWKKFD--------EKYHFS 347 (696)
Q Consensus 290 -~~~pDvIh~h~~~~~l~a~lla~~-------~gip~v~t~H~l~~~~~-~~-----s~~~~~~~~--------~~y~~~ 347 (696)
.+.+||||+|+|.+++++.++... .++|+|+|+|++..... +. ....+.... ....+.
T Consensus 150 ~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (536)
T 3vue_A 150 TYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEG 229 (536)
T ss_dssp CCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCE
T ss_pred cCCCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccc
Confidence 245788999999999888877654 36999999999754321 00 000000000 001111
Q ss_pred chhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHH
Q 005444 348 CQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKR 427 (696)
Q Consensus 348 ~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r 427 (696)
..+...+..+..||.|+|+|+..++++....+ +.+. + . ......++.+|+||||.+.|.|..+....
T Consensus 230 ~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~-------~g~~-l----~-~~~~~~~i~~I~NGiD~~~~~p~~d~~~~ 296 (536)
T 3vue_A 230 RKINWMKAGILEADRVLTVSPYYAEELISGIA-------RGCE-L----D-NIMRLTGITGIVNGMDVSEWDPSKDKYIT 296 (536)
T ss_dssp EEEEHHHHHHHHCSEEEESCHHHHHHHHTTCC-------CCSS-S----C-CCSCCCSCEECCCCCCTTTSCTTTCSSSS
T ss_pred cchhHHHHHHHhccEEEEcCHHHhhhhhcccc-------cccc-c----c-cccccCCeEEEECCcchhhcCCCCccccc
Confidence 22334567889999999999987764432211 0000 0 0 01125689999999999999986432100
Q ss_pred Hhh-hhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcch
Q 005444 428 LTA-LHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDR 506 (696)
Q Consensus 428 ~~~-~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~ 506 (696)
... ....++.+..++....+.+|+..+++.|+|+|+||+.++||++.|++|+.++.+ ++.+|+|+|.|..
T Consensus 297 ~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------- 367 (536)
T 3vue_A 297 AKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------- 367 (536)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH-------
T ss_pred cccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc-------
Confidence 000 000011122223344556788778999999999999999999999999999976 4689999998865
Q ss_pred HHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcc
Q 005444 507 EEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPA 586 (696)
Q Consensus 507 e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~ 586 (696)
.....++..+..+ .++|.+.+ ..+.+++..+++ ++|+||+||++|+||++++|||+||+|||+|++||++
T Consensus 368 ---~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~-~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~ 437 (536)
T 3vue_A 368 ---KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMA-GADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLV 437 (536)
T ss_dssp ---HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHH-HCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHH
T ss_pred ---hHHHHHHHHHhhc--CCceEEEE----eccHHHHHHHHH-hhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCch
Confidence 2344555555554 46899998 667788888888 4999999999999999999999999999999999999
Q ss_pred hhhccCCeEE----------EECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Q 005444 587 EIIEHGASGF----------HIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYG 656 (696)
Q Consensus 587 EiI~dg~~G~----------l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~y~ 656 (696)
|+|.|+.+|| +++|.|+++++++|.+++. +..++ .|++|.+++. .++|||+..+++|+++|+..+
T Consensus 438 e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 438 DTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred heeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH-hcCcH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHHHhh
Confidence 9999999999 6788899999999988874 33455 5788887774 468999999999999998653
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=6.9e-41 Score=362.98 Aligned_cols=368 Identities=17% Similarity=0.266 Sum_probs=280.9
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeee
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 241 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i 241 (696)
++|||++++++.. |..||.+.++. .|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCceEEEEeCccC---------CccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCccc-------hhhh
Confidence 3589999998755 45799999999 555556 699999 8876643210 0111
Q ss_pred cCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCc-EEE
Q 005444 242 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT-QCT 320 (696)
Q Consensus 242 ~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip-~v~ 320 (696)
....++.+++++.... ++.. .+...+.+.+.+ .+||+||+|..........++++.++| +|+
T Consensus 53 ~~~~~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVM-------------LPTP-TTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSC-------------CSCH-HHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEcccccc-------------ccch-hhHHHHHHHHHh---cCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 1223578888876432 1111 233344444443 389999999877654445556777887 888
Q ss_pred EecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccc
Q 005444 321 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 400 (696)
Q Consensus 321 t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~ 400 (696)
+.|+... .|.. ... .....+..++.+|.|+++|....+..++. .+
T Consensus 116 ~~h~~~~--------~~~~-~~~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSM-LPG-----SRQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-- 160 (394)
T ss_dssp ECCSTHH--------HHTT-SHH-----HHHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC--
T ss_pred Eeccchh--------hhhh-cch-----hhHHHHHHHHhCCEEEEcCHHHHHHHHHh-------------------cC--
Confidence 9997532 1110 000 11123457789999999998876532211 11
Q ss_pred cCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHH
Q 005444 401 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 480 (696)
Q Consensus 401 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~ 480 (696)
...++.+||||+|.+.|.|....... ..++.+|+ ++++++|+|+||+.+.||++.+++++.
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDKS----------------ATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHHH----------------HHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred -CCCCeEEecCCcCHHHcCCCCchhhH----------------HHHHhcCC--CcCceEEEEEeccccccCHHHHHHHHH
Confidence 15799999999999999884333211 11234666 667799999999999999999999999
Q ss_pred HhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCC
Q 005444 481 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 560 (696)
Q Consensus 481 ~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 560 (696)
++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|+||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHhhCCCeEEEEEcCchH------------HHHHHHHH--hcccCeEEEcC----CCCHHHHHHHHHh-CCEEEecCcc
Confidence 9988889999999999876 56677777 56778999999 7778999999995 9999999999
Q ss_pred -------CCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 005444 561 -------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLK 633 (696)
Q Consensus 561 -------E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~ 633 (696)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ .|++.+++|++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHH----hCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999997776 899999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHH
Q 005444 634 RIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 634 ~v~~~ysw~~~a~~l~~ly~~ 654 (696)
++.++|||+.+++++.++|+.
T Consensus 358 ~~~~~~s~~~~~~~~~~~~~~ 378 (394)
T 3okp_A 358 HVEAEWSWEIMGERLTNILQS 378 (394)
T ss_dssp HHHHHTBHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 998899999999999999863
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=9.2e-41 Score=374.50 Aligned_cols=430 Identities=14% Similarity=0.108 Sum_probs=280.9
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCc----------
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 233 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~---------- 233 (696)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCccccccccccceeEEEec
Confidence 7999999876642 24699999999 66667799999999 8886532110000
Q ss_pred -cccceeee-cCCCceEEEEecccCcccccccccccC--CCccc----HHHHHHHHHHHHHHHh-CCCCeEEEEeCCCch
Q 005444 234 -CNQRLERV-SGTEHTHILRVPFRSEKGILRQWISRF--DVWPY----LETFTEDVGSEITAEL-QGFPDFIIGNYSDGN 304 (696)
Q Consensus 234 -~~~~~e~i-~~~~~v~I~rvp~~~~~~~~~~wisr~--~i~p~----l~~f~~~~~~~i~~~~-~~~pDvIh~h~~~~~ 304 (696)
.....+.. ....++.+++++............... .-|+. +..+...+.+.+.... ..+|||||+|.+..+
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~ 141 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG 141 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT
T ss_pred ccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchh
Confidence 00000000 001367888876421000000000000 00111 1112222222222111 168999999998777
Q ss_pred HHHHHHh-hcCCCcEEEEecCCCccCCCC-CCccHhhhhhh------hhccchhhhhHHhhhcCCEEEeccHHHHhhccc
Q 005444 305 LVASLLA-YKMGITQCTIAHALEKTKYPD-SDIYWKKFDEK------YHFSCQFTADLIAMNNADFIITSTYQEIAGTKN 376 (696)
Q Consensus 305 l~a~lla-~~~gip~v~t~H~l~~~~~~~-s~~~~~~~~~~------y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~ 376 (696)
+++.+++ +..++|+|++.|+........ .......+... ..+......++..++.+|.|+++|...++...+
T Consensus 142 ~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 221 (485)
T 2qzs_A 142 LAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITE 221 (485)
T ss_dssp THHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTS
T ss_pred HHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhc
Confidence 7777777 788999999999974321100 00000000000 001111234567889999999999987653221
Q ss_pred ccccccccccccccccceeeccccc------CC--CcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccc
Q 005444 377 TVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 448 (696)
Q Consensus 377 ~v~qy~~~~~~~~p~l~~~~~gi~~------~~--~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 448 (696)
. ..|+++ .. .++.+||||+|.+.|.|..............++.........++.
T Consensus 222 ~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 283 (485)
T 2qzs_A 222 P------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283 (485)
T ss_dssp H------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHH
T ss_pred c------------------ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHH
Confidence 1 001110 12 689999999999988875321000000000000000000122344
Q ss_pred cCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcE
Q 005444 449 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 528 (696)
Q Consensus 449 ~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V 528 (696)
+|+..++++++|+|+||+.+.||++.|++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++ ++|
T Consensus 284 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v 349 (485)
T 2qzs_A 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP--GQV 349 (485)
T ss_dssp HTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST--TTE
T ss_pred cCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch----------HHHHHHHHHHHhCC--CcE
Confidence 676323378999999999999999999999999876 4899999999853 24677888898875 678
Q ss_pred E-EeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccC---------CeEEEE
Q 005444 529 R-WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHI 598 (696)
Q Consensus 529 ~-flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg---------~~G~l~ 598 (696)
. |.| . +.+++..+|+. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|+++
T Consensus 350 ~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~ 423 (485)
T 2qzs_A 350 GVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF 423 (485)
T ss_dssp EEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE
T ss_pred EEeCC----C-CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEE
Confidence 6 887 3 46677899995 999999999999999999999999999999999999999998 899999
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 599 DPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 599 ~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+++|+++++++|.+++. +..|++.+++|++++++ ++|||+.++++|+++|+.
T Consensus 424 ~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~ 475 (485)
T 2qzs_A 424 EDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYR 475 (485)
T ss_dssp CSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHH
Confidence 99999999999977652 22699999999999974 799999999999999864
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.7e-40 Score=360.51 Aligned_cols=358 Identities=18% Similarity=0.254 Sum_probs=264.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeeecCCCceEEEEecccCccccccc
Q 005444 184 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 263 (696)
Q Consensus 184 p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i~~~~~v~I~rvp~~~~~~~~~~ 263 (696)
|..||.+.++. +|+++|+++||+|+ |+|...+.... ...+++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCCccc----------ccCCceEEEeccccccc-----
Confidence 55799999999 66667799999999 88865322100 11234666655543211
Q ss_pred ccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchH-HHHHHhhcC--CCcEEEEecCCCccCCCCCCccHhhh
Q 005444 264 WISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNL-VASLLAYKM--GITQCTIAHALEKTKYPDSDIYWKKF 340 (696)
Q Consensus 264 wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l-~a~lla~~~--gip~v~t~H~l~~~~~~~s~~~~~~~ 340 (696)
.+...++...+...+.+.+.+. +||+||+|++.+.. .+.+.++.. ++|+|++.|+.........
T Consensus 77 ---~~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~------- 143 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSD------- 143 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTC-------
T ss_pred ---ccccccccHHHHHHHHHHHHHc---CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCCC-------
Confidence 1111122223334444555443 89999999876543 344444444 5999999998432111100
Q ss_pred hhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCC
Q 005444 341 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 420 (696)
Q Consensus 341 ~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p 420 (696)
..+ ....+..++.+|.|+++|+...+...+. . + ...++.+||||+|.+.|.|
T Consensus 144 -~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~--~-~~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 144 -PSL-----NNLIRFGIEQSDVVTAVSHSLINETHEL-------------------V--K-PNKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp -TTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHH-------------------T--C-CSSCEEECCCCCCTTTCCC
T ss_pred -HHH-----HHHHHHHHhhCCEEEECCHHHHHHHHHh-------------------h--C-CcccEEEecCCccHHhcCC
Confidence 000 1124457889999999998876532111 0 1 1468999999999998877
Q ss_pred CchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCC
Q 005444 421 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDV 500 (696)
Q Consensus 421 ~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~ 500 (696)
......+ +.+|+ ++++++|+++||+.+.||++.+++|+..+.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHHHH-------------------HHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 5332211 22554 56788999999999999999999999999766 5699999999876
Q ss_pred CCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 005444 501 NKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 580 (696)
Q Consensus 501 ~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat 580 (696)
.+.++++++++++.++|.|+|+ .+++..+++. +|++|+||.+|+||++++|||+||+|||+|
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHcCCCCeEEEeCc------hhhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEe
Confidence 6788999999999999999994 2467888885 999999999999999999999999999999
Q ss_pred CCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 581 CHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 581 ~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+.||..|++.++.+|++++++|+++++++|.+++ .|++.+++|++++++++.++|||+.+++++.++|+.
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 384 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997776 799999999999999999999999999999999874
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=7.9e-41 Score=375.01 Aligned_cols=430 Identities=16% Similarity=0.170 Sum_probs=280.9
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCcccc-------
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQ------- 236 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~------- 236 (696)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... .+..
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccc-cccccceeEEE
Confidence 7999999877642 24699999999 66667799999999 88865322100 0000
Q ss_pred ------ceeee-cCCCceEEEEecccCccccccc--cccc--CCCccc----HHHHHHHHHHHHHHHh--CCCCeEEEEe
Q 005444 237 ------RLERV-SGTEHTHILRVPFRSEKGILRQ--WISR--FDVWPY----LETFTEDVGSEITAEL--QGFPDFIIGN 299 (696)
Q Consensus 237 ------~~e~i-~~~~~v~I~rvp~~~~~~~~~~--wisr--~~i~p~----l~~f~~~~~~~i~~~~--~~~pDvIh~h 299 (696)
..... ....++.+++++...... +. .... ..-|+. +..|...+.+ +.+.+ ..+|||||+|
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DiIh~~ 137 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYE--RSGGPYLGQTGKDYPDNWKRFAALSLAAAR-IGAGVLPGWRPDMVHAH 137 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHC--SSSCSSBCTTSSBCTTHHHHHHHHHHHHHH-HHTTCSSSCCCSEEEEE
T ss_pred EEecCCeEEEEEEEecCceEEEEeChHHhC--CCccccCCcccccccchHHHHHHHHHHHHH-HHHHhccCCCCCEEEec
Confidence 00000 001367888876431000 00 0000 000111 1112222222 22222 5689999999
Q ss_pred CCCchHHHHHHhhc--CCCcEEEEecCCCccCC-CCCCc-----cHhhhh-hhhhccchhhhhHHhhhcCCEEEeccHHH
Q 005444 300 YSDGNLVASLLAYK--MGITQCTIAHALEKTKY-PDSDI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQE 370 (696)
Q Consensus 300 ~~~~~l~a~lla~~--~gip~v~t~H~l~~~~~-~~s~~-----~~~~~~-~~y~~~~~~~~e~~a~~~AD~IIt~S~~~ 370 (696)
.+..++++.++++. .++|+|+++|+...... +.... .+..+. ....+......++.+++.+|.|+++|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 217 (485)
T 1rzu_A 138 DWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSY 217 (485)
T ss_dssp HHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHH
T ss_pred ccchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhH
Confidence 97767777777765 89999999999753211 00000 000000 00001111234567889999999999987
Q ss_pred HhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccC
Q 005444 371 IAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG 450 (696)
Q Consensus 371 ~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g 450 (696)
.+...+.. | ++.++.+ ++....++.+||||+|.+.|.|..............++....+....++.+|
T Consensus 218 ~~~~~~~~--~----g~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 218 AEEILTAE--F----GMGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HHHTTSHH--H----HTTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred HHHHhccc--c----CcchHHH------HHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 65322110 0 0000000 0123578999999999998887542100000000000000000011233466
Q ss_pred CCCCCC-CCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 005444 451 TLSDRS-KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 529 (696)
Q Consensus 451 ~l~~~~-k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~ 529 (696)
+ +++ +++|+|+||+.+.||++.|++|+..+.+ ++++|+|+|+|+. .+.+.+++++++++ ++|.
T Consensus 286 ~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~ 349 (485)
T 1rzu_A 286 I--DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVG 349 (485)
T ss_dssp C--CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEE
T ss_pred C--CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch----------HHHHHHHHHHHhCC--CcEE
Confidence 6 333 6799999999999999999999999876 4899999999853 24677888888875 6787
Q ss_pred -EeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccC---------CeEEEEC
Q 005444 530 -WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHID 599 (696)
Q Consensus 530 -flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg---------~~G~l~~ 599 (696)
|.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++
T Consensus 350 ~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~ 423 (485)
T 1rzu_A 350 VAIG----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFS 423 (485)
T ss_dssp EEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEES
T ss_pred EecC----C-CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeC
Confidence 787 3 45677889995 999999999999999999999999999999999999999998 8999999
Q ss_pred CCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 600 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 600 p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
++|+++++++|.+++. +..|++.+++|++++++ ++|||+.++++|+++|+.
T Consensus 424 ~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 424 PVTLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp SCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHH
Confidence 9999999999977652 23699999999999974 789999999999999863
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.8e-40 Score=357.58 Aligned_cols=367 Identities=15% Similarity=0.189 Sum_probs=264.5
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeeecC
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 243 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i~~ 243 (696)
|||++++++..| .||.+.++. +|++.|+++||+|+ |+|.......
T Consensus 1 MkIl~i~~~~~~----------~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYFP----------FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEECT----------TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CeEEEEEeecCC----------CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCCCC-------------
Confidence 799999986542 499999999 66667799999999 8886532110
Q ss_pred CCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEEEec
Q 005444 244 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 323 (696)
Q Consensus 244 ~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~H 323 (696)
.+++.+.++|...... ......+...+.+.+.+ .+||+||+|.+.++..+...+...+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHHHHhc---cCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1257788877643211 01112333334444433 489999999866543322222333334333334
Q ss_pred CCCccCCCCCCccHhhhhhhhhccchhhhhHHhh--hcCCEEEeccHHHHhhcccccccccccccccccccceeeccccc
Q 005444 324 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM--NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 401 (696)
Q Consensus 324 ~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~--~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~ 401 (696)
+... .....+.+.. ..+...+ +.+|.|+++|+...+...+. .|+
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~-- 157 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQKH-------------------YQT-- 157 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHHH-------------------HCC--
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHHH-------------------hCC--
Confidence 3110 0111111111 1233333 37999999998876532111 122
Q ss_pred CCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHH
Q 005444 402 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 481 (696)
Q Consensus 402 ~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~ 481 (696)
...++.+||||+|.+.|.|......+ ...++.+|+ ++++++|+|+||+.+.||++.+++++..
T Consensus 158 ~~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 158 EPERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp CGGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred ChhheEEecCCcCHHhcCcccchhHH---------------HHHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 25689999999999888764321111 011233666 6678899999999999999999999998
Q ss_pred hhcc-CCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCC
Q 005444 482 NSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 560 (696)
Q Consensus 482 l~~~-~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 560 (696)
+.+. .++++|+|+|+|.. +.++++++++++.++|.|+|+ .+++..+++. +|++|+||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSC
T ss_pred hHhccCCceEEEEEcCCCH-------------HHHHHHHHHcCCCCcEEECCC------cccHHHHHHh-cCEEEecccc
Confidence 8665 57899999999754 467888999999999999994 2468889985 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEEC-CCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhC
Q 005444 561 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHID-PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 639 (696)
Q Consensus 561 E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~-p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~y 639 (696)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+|+++++++|.+++ +|++.+++|++++++++ ++|
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHS
T ss_pred CCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999999999999999998 899999999998776 79999999999999998 578
Q ss_pred CHHHHHHHHHHHHHHh
Q 005444 640 TWKIYSERLMTLAGVY 655 (696)
Q Consensus 640 sw~~~a~~l~~ly~~y 655 (696)
+|...++++.++++.|
T Consensus 356 ~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 DLYSLPEKAADIITGG 371 (374)
T ss_dssp CCSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 11
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=5.8e-39 Score=352.50 Aligned_cols=288 Identities=19% Similarity=0.203 Sum_probs=222.7
Q ss_pred CCCeEEEEeCCCchHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEE-eccHH
Q 005444 291 GFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII-TSTYQ 369 (696)
Q Consensus 291 ~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~II-t~S~~ 369 (696)
.+||+||+|.+....++.++++ ++|+|++.|+..... ....|+. ....+..+|.++ ++|..
T Consensus 125 ~~~Dvv~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~---~~~~~~~-------------~~~~~~~~~~~i~~~s~~ 186 (416)
T 2x6q_A 125 SSFDYVLVHDPQPAALIEFYEK--KSPWLWRCHIDLSSP---NREFWEF-------------LRRFVEKYDRYIFHLPEY 186 (416)
T ss_dssp GGSSEEEEESSTTGGGGGGSCC--CSCEEEECCSCCSSC---CHHHHHH-------------HHHHHTTSSEEEESSGGG
T ss_pred cCCCEEEEeccchhhHHHHHHh--cCCEEEEEccccCCc---cHHHHHH-------------HHHHHHhCCEEEEechHH
Confidence 4899999999876554444433 389999999753321 1111111 112345667665 55532
Q ss_pred HHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCcccccccc
Q 005444 370 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHV 449 (696)
Q Consensus 370 ~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 449 (696)
..+ +++ ..++.+||||+|...|.+......... ..++.+
T Consensus 187 ~~~-------------------------~~~--~~~~~vi~ngvd~~~~~~~~~~~~~~~--------------~~r~~~ 225 (416)
T 2x6q_A 187 VQP-------------------------ELD--RNKAVIMPPSIDPLSEKNVELKQTEIL--------------RILERF 225 (416)
T ss_dssp SCT-------------------------TSC--TTTEEECCCCBCTTSTTTSCCCHHHHH--------------HHHHHT
T ss_pred HHh-------------------------hCC--ccceEEeCCCCChhhhcccccChhhHH--------------HHHHHh
Confidence 110 111 468999999999877754321110000 112336
Q ss_pred CCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEE
Q 005444 450 GTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR 529 (696)
Q Consensus 450 g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~ 529 (696)
|+ ++++++|+++||+.+.||++.+++|+..+.+..|+++|+|+|+|+.. + ....+.++++++++++.++|.
T Consensus 226 ~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~----~---~~~~~~l~~~~~~~~~~~~V~ 296 (416)
T 2x6q_A 226 DV--DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHD----D---PEGWIYFEKTLRKIGEDYDVK 296 (416)
T ss_dssp TC--CTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTT----C---HHHHHHHHHHHHHHTTCTTEE
T ss_pred CC--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCccc----c---hhHHHHHHHHHHHhCCCCcEE
Confidence 66 67789999999999999999999999999888889999999999751 1 123456788899999999999
Q ss_pred EeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHH
Q 005444 530 WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAEL 609 (696)
Q Consensus 530 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~ 609 (696)
|+|+.. .++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+++++++
T Consensus 297 ~~G~~~-~~~~~~~~~~~~~-ad~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~ 372 (416)
T 2x6q_A 297 VLTNLI-GVHAREVNAFQRA-SDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEV 372 (416)
T ss_dssp EEEGGG-TCCHHHHHHHHHH-CSEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHH
T ss_pred EecccC-CCCHHHHHHHHHh-CCEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHH
Confidence 999654 3456789999995 9999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 610 MADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 610 I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
|.+++ +|++.+++|++++++++.++|||+.+++++.++|+.
T Consensus 373 i~~ll----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 373 VLYLL----KHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp HHHHH----HCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred HHHHH----hCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 97776 799999999999999998899999999999999863
No 12
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.2e-39 Score=353.00 Aligned_cols=363 Identities=15% Similarity=0.192 Sum_probs=265.7
Q ss_pred CceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceee
Q 005444 161 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 240 (696)
Q Consensus 161 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~ 240 (696)
.++|||+++++... |..||.+.++. .+++.|+++||+|+ +++.......-. ....
T Consensus 18 ~~~MkIl~i~~~~~---------~~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~----~~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSF---------DVPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVKLP----DYVV 72 (406)
T ss_dssp ---CEEEEECSSCT---------TSCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSCCC----TTEE
T ss_pred CCcceEEEEeccCC---------CCCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCccccCC----cccc
Confidence 45689999996433 34589999999 66667799999999 888764332101 1111
Q ss_pred ecCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEE
Q 005444 241 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 320 (696)
Q Consensus 241 i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~ 320 (696)
.. + .++++|+... ..+.. +...+...+.+.+.+. +||+||+|.+.....+.++++..++|+|+
T Consensus 73 ~~---~-~~~~~~~~~~-------~~~~~---~~~~~~~~l~~~l~~~---~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 SG---G-KAVPIPYNGS-------VARLR---FGPATHRKVKKWIAEG---DFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp EC---C-CCC----------------------CCHHHHHHHHHHHHHH---CCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred cC---C-cEEeccccCC-------ccccc---ccHHHHHHHHHHHHhc---CCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 11 1 3444443221 11111 1111223344444443 89999999987765577777778999999
Q ss_pred EecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccc
Q 005444 321 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 400 (696)
Q Consensus 321 t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~ 400 (696)
+.|+..... ..+..+ +. . .+ ..++.+|.++++|....+...+ +++
T Consensus 136 ~~h~~~~~~-----~~~~~~---~~----~-~~-~~~~~~d~ii~~s~~~~~~~~~---------------------~~~ 180 (406)
T 2gek_A 136 TFHTSTTKS-----LTLSVF---QG----I-LR-PYHEKIIGRIAVSDLARRWQME---------------------ALG 180 (406)
T ss_dssp EECCCCCSH-----HHHHHH---HS----T-TH-HHHTTCSEEEESSHHHHHHHHH---------------------HHS
T ss_pred EEcCcchhh-----hhHHHH---HH----H-HH-HHHhhCCEEEECCHHHHHHHHH---------------------hcC
Confidence 999853211 011111 11 1 11 5788999999999887652211 122
Q ss_pred cCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccc-cccCChHHHHHHH
Q 005444 401 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVKNMTGLVECY 479 (696)
Q Consensus 401 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~Kgi~~Llea~ 479 (696)
..++ +||||+|.+.|.+.... .+. ++++++|+|+||+ .+.||++.+++++
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999998766554311 111 2356899999999 9999999999999
Q ss_pred HHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCC
Q 005444 480 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 559 (696)
Q Consensus 480 ~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 559 (696)
.++.+..++++|+|+|+++. +.++++++++ .++|.|+| .++..++..+++. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~~-------------~~l~~~~~~~--~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~ 291 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGDE-------------DELREQAGDL--AGHLRFLG----QVDDATKASAMRS-ADVYCAPHL 291 (406)
T ss_dssp HHHHTTSTTCEEEEESCSCH-------------HHHHHHTGGG--GGGEEECC----SCCHHHHHHHHHH-SSEEEECCC
T ss_pred HHHHHHCCCeEEEEEcCCcH-------------HHHHHHHHhc--cCcEEEEe----cCCHHHHHHHHHH-CCEEEecCC
Confidence 99988888999999998742 4667777776 67899999 7778899999995 999999996
Q ss_pred -CCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHh
Q 005444 560 -YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYER 638 (696)
Q Consensus 560 -~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ 638 (696)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.++++++++++++. +
T Consensus 292 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 292 GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-R 366 (406)
T ss_dssp SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-h
Confidence 9999999999999999999999999999999999999999999999999997776 799999999999999997 9
Q ss_pred CCHHHHHHHHHHHHHH
Q 005444 639 YTWKIYSERLMTLAGV 654 (696)
Q Consensus 639 ysw~~~a~~l~~ly~~ 654 (696)
|||+.+++++.++|+.
T Consensus 367 ~s~~~~~~~~~~~~~~ 382 (406)
T 2gek_A 367 YDWSVVSAQIMRVYET 382 (406)
T ss_dssp GBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999864
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3e-38 Score=346.18 Aligned_cols=359 Identities=13% Similarity=0.116 Sum_probs=261.0
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeeecC
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 243 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i~~ 243 (696)
|||++++++. |..||.+.++. +|+++|+++ |+|+ |+|.... |.....
T Consensus 1 MkI~~v~~~~----------p~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~~------- 47 (413)
T 3oy2_A 1 MKLIIVGAHS----------SVPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVHA------- 47 (413)
T ss_dssp CEEEEEEECT----------TCCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSCS-------
T ss_pred CeEEEecCCC----------CCCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Cccccc-------
Confidence 8999999753 34599999999 666777999 9999 7775432 111000
Q ss_pred CCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCc----EE
Q 005444 244 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT----QC 319 (696)
Q Consensus 244 ~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip----~v 319 (696)
........... .. .+++.. .+.+ ..+.+.+... +||+||+|++.+ ..+.++++..++| .+
T Consensus 48 --~~~~~~~~~~~---~~-~~~~~~-~~~~-----~~l~~~l~~~---~~Div~~~~~~~-~~~~~~~~~~~~~~~~~~~ 111 (413)
T 3oy2_A 48 --NIEEFDAQTAE---HV-RGLNEQ-GFYY-----SGLSEFIDVH---KPDIVMIYNDPI-VIGNYLLAMGKCSHRTKIV 111 (413)
T ss_dssp --SSEEEEHHHHH---HH-TTCCST-TCCH-----HHHHHHHHHH---CCSEEEEEECHH-HHHHHHHHGGGCCSCCEEE
T ss_pred --ccccCCccccc---cc-cccccc-cchH-----HHHHHHHHhc---CCCEEEEcchHH-HHHHHHHHhccCCCCCcee
Confidence 01111111000 00 011100 1111 1233444433 999999995444 4455555555544 45
Q ss_pred EEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCC--EEEeccHHHHhhcccccccccccccccccccceeec
Q 005444 320 TIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVH 397 (696)
Q Consensus 320 ~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~ 397 (696)
...|...... ... ....++.+| .|+++|....+..++ .
T Consensus 112 ~~~~~~~~~~--------~~~------------~~~~~~~~~~~~ii~~S~~~~~~~~~--------------------~ 151 (413)
T 3oy2_A 112 LYVDLVSKNI--------REN------------LWWIFSHPKVVGVMAMSKCWISDICN--------------------Y 151 (413)
T ss_dssp EEECCCSBSC--------CGG------------GGGGGGCTTEEEEEESSTHHHHHHHH--------------------T
T ss_pred eeccccchhh--------HHH------------HHHHHhccCCceEEEcCHHHHHHHHH--------------------c
Confidence 5555432211 000 124677888 999999887653211 1
Q ss_pred ccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHH
Q 005444 398 GIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVE 477 (696)
Q Consensus 398 gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Lle 477 (696)
|+ +.++.+||||+|.+.|.. .. +.+++..+.++++|+++||+.+.||++.+++
T Consensus 152 ~~---~~~~~vi~ngvd~~~~~~---~~---------------------~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 152 GC---KVPINIVSHFVDTKTIYD---AR---------------------KLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp TC---CSCEEECCCCCCCCCCTT---HH---------------------HHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CC---CCceEEeCCCCCHHHHHH---HH---------------------HhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 22 578999999999987711 11 1245422237889999999999999999999
Q ss_pred HHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCc-------EEEeccccccCChhHHHHHHHcc
Q 005444 478 CYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ-------FRWIAAQTNRARNGELYRYIADT 550 (696)
Q Consensus 478 a~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~-------V~flG~~~~~v~~~el~~~la~a 550 (696)
|+.++.+..++++|+|+|+|+.... ....+.++++++++++.++ |.|.| .++.+++..+|+.
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~------~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g----~~~~~~~~~~~~~- 273 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESK------FDLHSIALRELVASGVDNVFTHLNKIMINRT----VLTDERVDMMYNA- 273 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCS------CCHHHHHHHHHHHHTCSCHHHHHTTEEEECS----CCCHHHHHHHHHH-
T ss_pred HHHHHHHhCCCcEEEEEeCCcccch------hhHHHHHHHHHHHcCcccccccccceeeccC----cCCHHHHHHHHHh-
Confidence 9999988889999999999976111 1123678899999999987 77888 7888999999995
Q ss_pred ccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCe---------------EE--EECCCCHHHHHHHHHHH
Q 005444 551 KGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGAS---------------GF--HIDPYHPDQAAELMADF 613 (696)
Q Consensus 551 advfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~---------------G~--l~~p~d~e~la~~I~~~ 613 (696)
+|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| ++
T Consensus 274 adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l 352 (413)
T 3oy2_A 274 CDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TF 352 (413)
T ss_dssp CSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HH
T ss_pred CCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999887 99 99999999999999 88
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 614 FGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 614 l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+ .|++.+++|++++++++.++|||+.++++++++|+.
T Consensus 353 ~----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 389 (413)
T 3oy2_A 353 F----KDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNS 389 (413)
T ss_dssp T----TSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred h----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7 799999999999999998899999999999999874
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.2e-37 Score=329.79 Aligned_cols=311 Identities=15% Similarity=0.102 Sum_probs=243.8
Q ss_pred eeEEEEEccc--------cccCCcccCCCC-CCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCc
Q 005444 163 VFNVVILSPH--------GYFGQANVLGLP-DTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT 233 (696)
Q Consensus 163 ~~rI~iis~h--------~~~~~~~~lG~p-~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~ 233 (696)
+|||++++++ .+|.+ | ..||.+.++. +|+++|+++||+|+ +++.......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~------p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~~--- 61 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVP------PQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPAG--- 61 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSS------CSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCCC---
T ss_pred ccEEEEEeccccccCcccccccC------cccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCCC---
Confidence 3899999987 32211 2 3599999999 66666789999999 8876632211
Q ss_pred cccceeeecCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhc
Q 005444 234 CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYK 313 (696)
Q Consensus 234 ~~~~~e~i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~ 313 (696)
..++.+++.+ .+ ..+.+.+.+ .+||+||+|.+.....+ ++.
T Consensus 62 ----------~~~~~~~~~~----------------~~-------~~l~~~l~~---~~~Dvi~~~~~~~~~~~---~~~ 102 (342)
T 2iuy_A 62 ----------RPGLTVVPAG----------------EP-------EEIERWLRT---ADVDVVHDHSGGVIGPA---GLP 102 (342)
T ss_dssp ----------STTEEECSCC----------------SH-------HHHHHHHHH---CCCSEEEECSSSSSCST---TCC
T ss_pred ----------CCcceeccCC----------------cH-------HHHHHHHHh---cCCCEEEECCchhhHHH---Hhh
Confidence 0133333211 00 023333333 38999999997764433 677
Q ss_pred CCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccc
Q 005444 314 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLY 393 (696)
Q Consensus 314 ~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~ 393 (696)
.++| |++.|+..... ..+|.|+++|+...+...
T Consensus 103 ~~~p-v~~~h~~~~~~----------------------------~~~d~ii~~S~~~~~~~~------------------ 135 (342)
T 2iuy_A 103 PGTA-FISSHHFTTRP----------------------------VNPVGCTYSSRAQRAHCG------------------ 135 (342)
T ss_dssp TTCE-EEEEECSSSBC----------------------------SCCTTEEESCHHHHHHTT------------------
T ss_pred cCCC-EEEecCCCCCc----------------------------ccceEEEEcCHHHHHHHh------------------
Confidence 8999 99999864321 018999999988765211
Q ss_pred eeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccccccCChH
Q 005444 394 RVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMT 473 (696)
Q Consensus 394 ~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~ 473 (696)
. ..++.+||||+|.+.|.|.... .+++++|+|+||+.+.||++
T Consensus 136 ------~--~~~~~vi~ngvd~~~~~~~~~~-----------------------------~~~~~~i~~vG~~~~~Kg~~ 178 (342)
T 2iuy_A 136 ------G--GDDAPVIPIPVDPARYRSAADQ-----------------------------VAKEDFLLFMGRVSPHKGAL 178 (342)
T ss_dssp ------C--CTTSCBCCCCBCGGGSCCSTTC-----------------------------CCCCSCEEEESCCCGGGTHH
T ss_pred ------c--CCceEEEcCCCChhhcCccccc-----------------------------CCCCCEEEEEeccccccCHH
Confidence 1 4578899999999887664320 23566899999999999999
Q ss_pred HHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccE
Q 005444 474 GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGA 553 (696)
Q Consensus 474 ~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadv 553 (696)
.+++++..+ +++|+|+|+|+. .+.+++++++++ ++|+|+| .++..++..+++. +|+
T Consensus 179 ~li~a~~~~-----~~~l~i~G~g~~------------~~~l~~~~~~~~--~~v~~~g----~~~~~~l~~~~~~-adv 234 (342)
T 2iuy_A 179 EAAAFAHAC-----GRRLVLAGPAWE------------PEYFDEITRRYG--STVEPIG----EVGGERRLDLLAS-AHA 234 (342)
T ss_dssp HHHHHHHHH-----TCCEEEESCCCC------------HHHHHHHHHHHT--TTEEECC----CCCHHHHHHHHHH-CSE
T ss_pred HHHHHHHhc-----CcEEEEEeCccc------------HHHHHHHHHHhC--CCEEEec----cCCHHHHHHHHHh-CCE
Confidence 999999987 689999999976 567788888877 7899999 7778899999995 999
Q ss_pred EEeCCC----------CCCCcHHHHHHHHcCCcEEEcCCCCcchhhcc--CCeEEEECCCCHHHHHHHHHHHHHhhhcCH
Q 005444 554 FVQPAF----------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASGFHIDPYHPDQAAELMADFFGKCKENP 621 (696)
Q Consensus 554 fV~PS~----------~E~fGltvlEAMa~GlPVvat~~gG~~EiI~d--g~~G~l~~p~d~e~la~~I~~~l~~l~~dp 621 (696)
+|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+++ +
T Consensus 235 ~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~----~-- 307 (342)
T 2iuy_A 235 VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP----A-- 307 (342)
T ss_dssp EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC----C--
T ss_pred EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH----H--
Confidence 999999 89999999999999999999999999999999 999999999 9999999996654 3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 622 SHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 622 ~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
++++++++.++|||+.+++++.++|+.
T Consensus 308 ------~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (342)
T 2iuy_A 308 ------SDEVRRAAVRLWGHVTIAERYVEQYRR 334 (342)
T ss_dssp ------HHHHHHHHHHHHBHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678899998999999999999999874
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=7.9e-34 Score=313.72 Aligned_cols=346 Identities=10% Similarity=0.008 Sum_probs=226.2
Q ss_pred CceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceee
Q 005444 161 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 240 (696)
Q Consensus 161 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~ 240 (696)
+..|||++++++..|+ ...||.. .+. +|+++|+++||+|+ |+|+..... . .....
T Consensus 44 ~~~mrI~~v~~~~~p~-------~~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~~-~----~~~~~ 98 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQE-------HMFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATPN-P----KDLQS 98 (413)
T ss_dssp CCSCEEEEEESCCCGG-------GCSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCCC-H----HHHGG
T ss_pred CCCceEEEEeCCCCcc-------ccccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCCC-h----HHHHh
Confidence 3469999999988753 1246764 477 67777899999999 999763210 0 00001
Q ss_pred ecCCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhh-------c
Q 005444 241 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAY-------K 313 (696)
Q Consensus 241 i~~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~-------~ 313 (696)
+. ..... ++.....+.. .+ ..+... ..... ...+||+||++.|.++..+..+.+ .
T Consensus 99 ~~---~~~~~--~~~~~~~~~~-~i-----~~~~~~-----~~~~~--~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 99 FK---SFKYV--MPEEDKDFAL-QI-----VPFNDR-----YNRTI--PVAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp GT---TSEEC--CTTCCCCCSE-EE-----EECSCC-----TTCCE--EECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred hh---cccee--eccCCccccc-ee-----eecccc-----ccccc--cCCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 11 11111 1111100000 00 000000 00000 013799999998766555544321 1
Q ss_pred CCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCC--EEEeccHHHHhhcccccccccccccccccc
Q 005444 314 MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNAD--FIITSTYQEIAGTKNTVGQYESHTAFTLPG 391 (696)
Q Consensus 314 ~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD--~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~ 391 (696)
.+.+.+..+|+.+...++... .+ ......+..++ .+|++|....+..++
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~~vi~~S~~~~~~l~~--------------- 211 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSS--------QY------VLAESTYKYRGPQIAVFNSELLKQYFNN--------------- 211 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSH--------HH------HHHHHTTSCCSCEEEEEESHHHHHHHHH---------------
T ss_pred ccCcEEEEEeechhhcCccCh--------HH------HHHHHHhccCCceEEEEcCHHHHHHHHH---------------
Confidence 356777788876543221110 00 11223455554 588899887653211
Q ss_pred cceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEccc-cccC
Q 005444 392 LYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARL-DHVK 470 (696)
Q Consensus 392 l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL-~~~K 470 (696)
.|++ .+++.++|||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 212 -----~g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 212 -----KGYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp -----HTCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred -----cCCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 1232 35788999999977554310 01 3456788899997 6889
Q ss_pred ChHHHHHHHHHhhccCCC---eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHH
Q 005444 471 NMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYI 547 (696)
Q Consensus 471 gi~~Llea~~~l~~~~~~---~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~l 547 (696)
|++.|++|++.+.+..|+ ++|+|+|+++.. .++++.++|+|+| .++.+++..+|
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------------------~~l~~~~~v~f~G----~~~~~~l~~~~ 312 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------------------IALGKGIHLNSLG----KLTLEDYADLL 312 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------------------EEEETTEEEEEEE----SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------------------hhcCCcCcEEEcC----CCCHHHHHHHH
Confidence 999999999999877665 899999998661 3457778999999 67789999999
Q ss_pred HccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHH
Q 005444 548 ADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKI 627 (696)
Q Consensus 548 a~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m 627 (696)
+. ||+||+||.+|+||++++||||||+|||+++ ||..|++.++.+|++++|+|++++|++|.+++ +|++.+++
T Consensus 313 ~~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~- 385 (413)
T 2x0d_A 313 KR-SSIGISLMISPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV- 385 (413)
T ss_dssp HH-CCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC-----
T ss_pred Hh-CCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH-
Confidence 95 9999999999999999999999999999954 56789999999999999999999999998776 68877766
Q ss_pred HHHHHHHHHHhCCHHHHHHH
Q 005444 628 SDGGLKRIYERYTWKIYSER 647 (696)
Q Consensus 628 ~~~a~~~v~~~ysw~~~a~~ 647 (696)
+|++++ ++|||+...++
T Consensus 386 --~~~~~~-~~~~W~~~~~~ 402 (413)
T 2x0d_A 386 --DKKESS-NMMFYINEFNE 402 (413)
T ss_dssp -----CCB-SCGGGCCCC--
T ss_pred --hHHHHH-HhCCHHHHHHH
Confidence 566665 68999999877
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.98 E-value=4.5e-31 Score=283.95 Aligned_cols=339 Identities=12% Similarity=0.026 Sum_probs=236.5
Q ss_pred eeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeeec
Q 005444 163 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVS 242 (696)
Q Consensus 163 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i~ 242 (696)
.|||++++. .+||.+..+. .|+++|+++||+|. ++|...... . +.+.
T Consensus 6 ~mkIl~~~~-------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~-----~---~~~~ 52 (364)
T 1f0k_A 6 GKRLMVMAG-------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADRME-----A---DLVP 52 (364)
T ss_dssp -CEEEEECC-------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTSTH-----H---HHGG
T ss_pred CcEEEEEeC-------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCcch-----h---hhcc
Confidence 489999972 1378888888 66677799999999 888653110 0 0011
Q ss_pred CCCceEEEEecccCcccccccccccCCCcccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEEEe
Q 005444 243 GTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 322 (696)
Q Consensus 243 ~~~~v~I~rvp~~~~~~~~~~wisr~~i~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~ 322 (696)
..++.+.+++.....+. ..................+.+.+.+. +||+||+|....+..+.++++..++|+|++.
T Consensus 53 -~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 126 (364)
T 1f0k_A 53 -KHGIEIDFIRISGLRGK--GIKALIAAPLRIFNAWRQARAIMKAY---KPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp -GGTCEEEECCCCCCTTC--CHHHHHTCHHHHHHHHHHHHHHHHHH---CCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred -ccCCceEEecCCccCcC--ccHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEEeCCcCchHHHHHHHHcCCCEEEEe
Confidence 12466666665421110 00000000000111223344444433 8999999987766667778888999999999
Q ss_pred cCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccC
Q 005444 323 HALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVF 402 (696)
Q Consensus 323 H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~ 402 (696)
|+... .+ ..++..+.+|.+++++... +
T Consensus 127 ~~~~~--------~~--------------~~~~~~~~~d~v~~~~~~~-------------------------------~ 153 (364)
T 1f0k_A 127 QNGIA--------GL--------------TNKWLAKIATKVMQAFPGA-------------------------------F 153 (364)
T ss_dssp CSSSC--------CH--------------HHHHHTTTCSEEEESSTTS-------------------------------S
T ss_pred cCCCC--------cH--------------HHHHHHHhCCEEEecChhh-------------------------------c
Confidence 87421 00 1224566899999876320 1
Q ss_pred CCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCC-EEEEEccccccCChHHHHHHHHH
Q 005444 403 DPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP-IVFSMARLDHVKNMTGLVECYGK 481 (696)
Q Consensus 403 ~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~-iIl~vGRL~~~Kgi~~Llea~~~ 481 (696)
+ ++.+|+||+|.+.|.+.... +.++. +++++ ++++.|++.+.||.+.+++++.+
T Consensus 154 ~-~~~~i~n~v~~~~~~~~~~~----------------------~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~~~ 208 (364)
T 1f0k_A 154 P-NAEVVGNPVRTDVLALPLPQ----------------------QRLAG--REGPVRVLVVGGSQGARILNQTMPQVAAK 208 (364)
T ss_dssp S-SCEECCCCCCHHHHTSCCHH----------------------HHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHHHH
T ss_pred C-CceEeCCccchhhcccchhh----------------------hhccc--CCCCcEEEEEcCchHhHHHHHHHHHHHHH
Confidence 2 57799999998766543211 11333 34455 55566799999999999999999
Q ss_pred hhccCCCeE-EEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCC
Q 005444 482 NSQLRELVN-LVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 560 (696)
Q Consensus 482 l~~~~~~~~-LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~ 560 (696)
+.+ +++ ++++|+++ .+.+.+++++++++ +|+|+|++ +++..+|+. +|++|+||.
T Consensus 209 l~~---~~~~l~i~G~~~-------------~~~l~~~~~~~~~~-~v~~~g~~------~~~~~~~~~-ad~~v~~sg- 263 (364)
T 1f0k_A 209 LGD---SVTIWHQSGKGS-------------QQSVEQAYAEAGQP-QHKVTEFI------DDMAAAYAW-ADVVVCRSG- 263 (364)
T ss_dssp HGG---GEEEEEECCTTC-------------HHHHHHHHHHTTCT-TSEEESCC------SCHHHHHHH-CSEEEECCC-
T ss_pred hcC---CcEEEEEcCCch-------------HHHHHHHHhhcCCC-ceEEecch------hhHHHHHHh-CCEEEECCc-
Confidence 865 688 56677664 25677888888874 69999954 367888884 999999983
Q ss_pred CCCcHHHHHHHHcCCcEEEcCCCCcc--------hhhccCCeEEEECCCC--HHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q 005444 561 EAFGLTVVEAMTCGLPTFATCHGGPA--------EIIEHGASGFHIDPYH--PDQAAELMADFFGKCKENPSHWKKISDG 630 (696)
Q Consensus 561 E~fGltvlEAMa~GlPVvat~~gG~~--------EiI~dg~~G~l~~p~d--~e~la~~I~~~l~~l~~dp~~~~~m~~~ 630 (696)
|++++|||+||+|||+|+.||.. +++.++ .|++++++| +++++++| .++ |++.+++|+++
T Consensus 264 ---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i----~~l--~~~~~~~~~~~ 333 (364)
T 1f0k_A 264 ---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTL----AGW--SRETLLTMAER 333 (364)
T ss_dssp ---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHH----HTC--CHHHHHHHHHH
T ss_pred ---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHH----Hhc--CHHHHHHHHHH
Confidence 99999999999999999999864 466555 599999988 99999998 455 99999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 631 GLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 631 a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+++.+ +.|+|+.++++++++|+.
T Consensus 334 ~~~~~-~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 334 ARAAS-IPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHTC-CTTHHHHHHHHHHHHHTT
T ss_pred HHHhh-ccCHHHHHHHHHHHHHHH
Confidence 99887 689999999999999874
No 17
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.98 E-value=3.7e-31 Score=300.32 Aligned_cols=335 Identities=14% Similarity=0.155 Sum_probs=225.5
Q ss_pred CCCeEEEEeCCCchHHHHHHhh-cCCCcEEEEecCCCccCC----CCCCccHhh--h-----hhhhhccchhhhhHHhhh
Q 005444 291 GFPDFIIGNYSDGNLVASLLAY-KMGITQCTIAHALEKTKY----PDSDIYWKK--F-----DEKYHFSCQFTADLIAMN 358 (696)
Q Consensus 291 ~~pDvIh~h~~~~~l~a~lla~-~~gip~v~t~H~l~~~~~----~~s~~~~~~--~-----~~~y~~~~~~~~e~~a~~ 358 (696)
.+|||+|+|+|..++++.++.. ..+++.|+|+|++...++ ...+.++.. + .....+...+..++.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 6799999999999998888875 458999999999853333 111222210 0 000112223445777889
Q ss_pred cCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhh
Q 005444 359 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQL 438 (696)
Q Consensus 359 ~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~ 438 (696)
.||.|+|+|+..+.+.+... +. +++. +||||+|.+.|.|...........+..+++.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll---------------------~r-~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLL---------------------KR-KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHT---------------------SS-CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHh---------------------cC-CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 99999999998877544311 11 2232 3999999999999633222111112223222
Q ss_pred cCCccccccccCCCCC-CCCCEEEEEcccc-ccCChHHHHHHHHHhhcc-------CCCeEEEEEeCccCCCC-------
Q 005444 439 LFDPEQNDEHVGTLSD-RSKPIVFSMARLD-HVKNMTGLVECYGKNSQL-------RELVNLVVVAGYIDVNK------- 502 (696)
Q Consensus 439 l~~~~~~~~~~g~l~~-~~k~iIl~vGRL~-~~Kgi~~Llea~~~l~~~-------~~~~~LvIvG~g~~~~~------- 502 (696)
+.+ ....++++ + +++++|+.+||+. ++||++.+++|+.++... ..-+.|+|+..+.....
T Consensus 317 l~~--~~~~~l~l--~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 317 VRG--HFHGCFDF--DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp HHH--HTTTCCCS--CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred HHh--hcccCCCC--CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 110 00011233 3 4556777789999 789999999999988643 22367888877643110
Q ss_pred ------------------------------------Cc-chHHHH---------------------------------HH
Q 005444 503 ------------------------------------SK-DREEIA---------------------------------EI 512 (696)
Q Consensus 503 ------------------------------------~~-d~e~~~---------------------------------~~ 512 (696)
.. |.++.- ..
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~ 472 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAN 472 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCc
Confidence 00 111000 11
Q ss_pred HHHHHHHHHcCCCCc------EEEec-cccc--cCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCC
Q 005444 513 EKMHELMKTYKLDGQ------FRWIA-AQTN--RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG 583 (696)
Q Consensus 513 ~~l~~li~~~~L~~~------V~flG-~~~~--~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~g 583 (696)
+.+...++++++.++ |.|++ +.++ .+-..++..+++ +||+||+||++|+||++++||||||+|||+|+.|
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~-~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVR-GCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHH-HCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHh-hceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 223344566777665 56664 2221 112236788888 5999999999999999999999999999999999
Q ss_pred CcchhhccC-------CeEEEE---CCCCHHHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 584 GPAEIIEHG-------ASGFHI---DPYHPDQAAELMADFFGKCK-ENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 584 G~~EiI~dg-------~~G~l~---~p~d~e~la~~I~~~l~~l~-~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
|+.|+|.++ .+|++| ++.|+++++++|.+++..+. .++..+..|++++++.+ ++|||+.++++|+++|
T Consensus 552 G~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHH
T ss_pred ChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 999999876 369988 45688888888888876555 47888999999998776 7999999999999999
Q ss_pred HH
Q 005444 653 GV 654 (696)
Q Consensus 653 ~~ 654 (696)
+.
T Consensus 631 e~ 632 (725)
T 3nb0_A 631 QL 632 (725)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=4e-32 Score=299.27 Aligned_cols=242 Identities=12% Similarity=0.051 Sum_probs=180.1
Q ss_pred CCeEEEEeCCCchHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHH
Q 005444 292 FPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEI 371 (696)
Q Consensus 292 ~pDvIh~h~~~~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~ 371 (696)
+||+||.+....+. ...+++..++|++++.|+..... ... ... .....++.+++.+|.||++|+...
T Consensus 124 ~~DvIh~~~~~~~~-~~~~~~~~~~p~v~~~h~~~~~~---------~~~-~~~--~~~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVA-FIELAKRVNPAAKLVYRASDGLS---------TIN-VAS--YIEREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGG-GHHHHHHHCTTSEEEEEESSCHH---------HHT-CCH--HHHHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHH-HHHHHHHhCCCEEEEEeccchhh---------ccc-ccH--HHHHHHHHHHHhCCEEEEcCHHHH
Confidence 68999944322222 12455677999999999743200 000 000 011234567899999999998754
Q ss_pred hhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCC
Q 005444 372 AGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGT 451 (696)
Q Consensus 372 ~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~ 451 (696)
+. +. .. . ++.+||||+|.+.|.|....
T Consensus 191 ~~----~~------------------~~---~-~i~vipngvd~~~f~~~~~~--------------------------- 217 (406)
T 2hy7_A 191 AE----VV------------------SR---D-NVFHVGHGVDHNLDQLGDPS--------------------------- 217 (406)
T ss_dssp GG----CS------------------CS---T-TEEECCCCBCTTHHHHHCSC---------------------------
T ss_pred HH----HH------------------hc---C-CEEEEcCCcChHhcCccccc---------------------------
Confidence 31 11 01 2 89999999998766432110
Q ss_pred CCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 005444 452 LSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 531 (696)
Q Consensus 452 l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~fl 531 (696)
..+++++|+|+||+.+.||+ ++ .+.+..++++|+|+|+|+ ++++++.++|+|+
T Consensus 218 -~~~~~~~i~~vGrl~~~Kg~---~~---~l~~~~~~~~l~ivG~g~--------------------~~~~~l~~~V~f~ 270 (406)
T 2hy7_A 218 -PYAEGIHAVAVGSMLFDPEF---FV---VASKAFPQVTFHVIGSGM--------------------GRHPGYGDNVIVY 270 (406)
T ss_dssp -SCCSSEEEEEECCTTBCHHH---HH---HHHHHCTTEEEEEESCSS--------------------CCCTTCCTTEEEE
T ss_pred -ccCCCcEEEEEeccccccCH---HH---HHHHhCCCeEEEEEeCch--------------------HHhcCCCCCEEEc
Confidence 02334789999999999999 33 333446899999999874 3456888999999
Q ss_pred ccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHH-------HcCCcEEEcCCCCcchhhccCCeEEE-ECCCCH
Q 005444 532 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAM-------TCGLPTFATCHGGPAEIIEHGASGFH-IDPYHP 603 (696)
Q Consensus 532 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAM-------a~GlPVvat~~gG~~EiI~dg~~G~l-~~p~d~ 603 (696)
| .++.+++..+++. +|+||+||..|+||++++||| +||+|||+|+. +.++.+|++ ++++|+
T Consensus 271 G----~~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~ 339 (406)
T 2hy7_A 271 G----EMKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNA 339 (406)
T ss_dssp C----CCCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCH
T ss_pred C----CCCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCH
Confidence 9 7778999999995 999999999999999999999 99999999987 667889999 999999
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005444 604 DQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 651 (696)
Q Consensus 604 e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~l 651 (696)
++++++|.+++ +|++ + ...++|||+.++++++++
T Consensus 340 ~~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~ 373 (406)
T 2hy7_A 340 DSVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDP 373 (406)
T ss_dssp HHHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCG
T ss_pred HHHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHh
Confidence 99999998877 5665 1 234789999999999988
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.97 E-value=5.7e-29 Score=284.36 Aligned_cols=173 Identities=9% Similarity=0.034 Sum_probs=154.3
Q ss_pred ccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEe-CccCCCCCcchHHHHHHHHHHHHHHHcCC
Q 005444 446 DEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVA-GYIDVNKSKDREEIAEIEKMHELMKTYKL 524 (696)
Q Consensus 446 ~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG-~g~~~~~~~d~e~~~~~~~l~~li~~~~L 524 (696)
++.+|+ ++ +++++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+. .+.++++++++|+
T Consensus 368 r~~~~~--~~-~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~------------~~~l~~~~~~~~l 431 (568)
T 2vsy_A 368 RTQCGL--PE-QGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEA------------DARLRAFAHAQGV 431 (568)
T ss_dssp TGGGTC--CT-TSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTH------------HHHHHHHHHHTTC
T ss_pred ccccCC--CC-CCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHH------------HHHHHHHHHHcCC
Confidence 445676 33 346669999999 99999999999998778999999999 6654 6788999999999
Q ss_pred C-CcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEE-------cCCC-------Ccchhh
Q 005444 525 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA-------TCHG-------GPAEII 589 (696)
Q Consensus 525 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVva-------t~~g-------G~~EiI 589 (696)
. ++|+|+| .++.+++..+++. +|+||+||.+ +||++++|||+||+|||+ |+.| |+.|+|
T Consensus 432 ~~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v 505 (568)
T 2vsy_A 432 DAQRLVFMP----KLPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMN 505 (568)
T ss_dssp CGGGEEEEC----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGB
T ss_pred ChhHEEeeC----CCCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhh
Confidence 8 9999999 6777899999995 9999999999 999999999999999999 9999 999998
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHH
Q 005444 590 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRI--YERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 590 ~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v--~~~ysw~~~a~~l~~ly~~ 654 (696)
.+ |+++++++|.+++ .|++.+++|++++++++ .+.|||+.++++++++|+.
T Consensus 506 ~~----------~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~ 558 (568)
T 2vsy_A 506 VA----------DDAAFVAKAVALA----SDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQA 558 (568)
T ss_dssp CS----------SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred cC----------CHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence 54 8999999997776 79999999999999998 6889999999999999874
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=1.7e-28 Score=275.59 Aligned_cols=313 Identities=11% Similarity=0.027 Sum_probs=211.0
Q ss_pred CCCeEEEEeCCCchHHHHHHhhcC-CCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHH
Q 005444 291 GFPDFIIGNYSDGNLVASLLAYKM-GITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 369 (696)
Q Consensus 291 ~~pDvIh~h~~~~~l~a~lla~~~-gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~ 369 (696)
..+|+||+|++...+++.++++.. ++|++++.|...+ .+. .+..+ .....-...+..+|.+...+..
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp----~~~-~~~~l-------p~~~~il~~ll~~d~i~f~~~~ 189 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFP----TPE-IFNAL-------PTYDTLLEQLCDYDLLGFQTEN 189 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCC----CHH-HHTTS-------TTHHHHHHHHTTSSEEEESSHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCC----CHH-HHhhC-------ccHHHHHHhhhccCeEEEECHH
Confidence 367999999988777777776654 7999999997422 111 11100 0000011234567877776654
Q ss_pred HHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHH--HHHhhhhcchhhhcCCcccccc
Q 005444 370 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQ--KRLTALHGSIEQLLFDPEQNDE 447 (696)
Q Consensus 370 ~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~--~r~~~~~~~~~~~l~~~~~~~~ 447 (696)
.....-.......... ....+. ....| ...++.+||||||.+.|.+..... .... ..++
T Consensus 190 ~~~~f~~~~~~~l~~~-~~~~~~-~~~~g---~~~~v~vip~GID~~~f~~~~~~~~~~~~~--------------~lr~ 250 (482)
T 1uqt_A 190 DRLAFLDCLSNLTRVT-TRSAKS-HTAWG---KAFRTEVYPIGIEPKEIAKQAAGPLPPKLA--------------QLKA 250 (482)
T ss_dssp HHHHHHHHHHHHSCEE-EETTTE-EEETT---EEEEEEECCCCCCHHHHHHHHHSCCCHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHhCCc-cccCCe-EEECC---eEEEEEEEeccCCHHHHHHHhcCcchHHHH--------------HHHH
Confidence 3322110000000000 000000 01111 135789999999998775431100 0000 0112
Q ss_pred ccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCC----CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcC
Q 005444 448 HVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRE----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK 523 (696)
Q Consensus 448 ~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~----~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~ 523 (696)
.++ ++++|+++||+++.||++.+++|++++.+.+| +++|+++|++.. ....+..+..+++.+++.+++
T Consensus 251 ~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~---~~~~~~~~l~~~l~~l~~~in 322 (482)
T 1uqt_A 251 ELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR---GDVQAYQDIRHQLENEAGRIN 322 (482)
T ss_dssp HTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCS---TTSHHHHHHHHHHHHHHHHHH
T ss_pred HhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCc---cchHHHHHHHHHHHHHHHHHh
Confidence 232 57899999999999999999999999876665 478999997432 111223344566666666543
Q ss_pred ----CC--CcEEE-eccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCC-----cEEEcCCCCcchhhcc
Q 005444 524 ----LD--GQFRW-IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-----PTFATCHGGPAEIIEH 591 (696)
Q Consensus 524 ----L~--~~V~f-lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-----PVvat~~gG~~EiI~d 591 (696)
.. ..|+| .| .++.+++..+|+ +||+||+||.+||||++++|||+||+ |+|+|+.+|..+.+.
T Consensus 323 ~~~g~~~~~~v~~~~g----~v~~~el~~ly~-~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~- 396 (482)
T 1uqt_A 323 GKYGQLGWTPLYYLNQ----HFDRKLLMKIFR-YSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT- 396 (482)
T ss_dssp HHHCBTTBCSEEEECS----CCCHHHHHHHHH-HCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT-
T ss_pred hhcccCCCceEEEeCC----CCCHHHHHHHHH-HccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC-
Confidence 22 13665 45 788899999999 59999999999999999999999997 999999888888882
Q ss_pred CCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 592 GASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 592 g~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
+|++++|.|++++|++|.+++. .+++.++++++++++++ ++|||+.+++++++.|+.
T Consensus 397 --~g~lv~p~d~~~lA~ai~~lL~---~~~~~r~~~~~~~~~~v-~~~s~~~~a~~~l~~l~~ 453 (482)
T 1uqt_A 397 --SALIVNPYDRDEVAAALDRALT---MSLAERISRHAEMLDVI-VKNDINHWQECFISDLKQ 453 (482)
T ss_dssp --TSEEECTTCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred --CeEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHh
Confidence 7999999999999999988772 36788999999999998 569999999999999864
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=3e-29 Score=270.55 Aligned_cols=284 Identities=14% Similarity=0.133 Sum_probs=200.7
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCC-chHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhh
Q 005444 280 DVGSEITAELQGFPDFIIGNYSD-GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN 358 (696)
Q Consensus 280 ~~~~~i~~~~~~~pDvIh~h~~~-~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~ 358 (696)
.+.+.+.+. +||+||+|... .++.+.++++..++|++++.|+... + . .|..+.. ........+
T Consensus 86 ~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~---~-~~~~~~~-------~~~~~~~~~ 149 (375)
T 3beo_A 86 GLDKVMKEA---KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--W---D-KYSPYPE-------EMNRQLTGV 149 (375)
T ss_dssp HHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--S---C-TTSSTTH-------HHHHHHHHH
T ss_pred HHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--c---c-ccCCChh-------HhhhhHHhh
Confidence 344444443 89999998753 4566677888899999988776521 1 0 0000000 011222345
Q ss_pred cCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCC-CcCCCCCCCchHHHHHhhhhcchhh
Q 005444 359 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHGSIEQ 437 (696)
Q Consensus 359 ~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~~~~ 437 (696)
.+|.++++|+...+...+ .|++ ..++.+|+|| +|...+.+.......
T Consensus 150 ~~d~ii~~s~~~~~~~~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~---------- 197 (375)
T 3beo_A 150 MADLHFSPTAKSATNLQK--------------------ENKD--ESRIFITGNTAIDALKTTVKETYSHP---------- 197 (375)
T ss_dssp HCSEEEESSHHHHHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHCCSSCCCH----------
T ss_pred hhheeeCCCHHHHHHHHH--------------------cCCC--cccEEEECChhHhhhhhhhhhhhhHH----------
Confidence 599999999887552110 1332 5689999999 787655332100000
Q ss_pred hcCCccccccccCCCCCCCCCEEEEEcccccc-CChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHH
Q 005444 438 LLFDPEQNDEHVGTLSDRSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMH 516 (696)
Q Consensus 438 ~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~-Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~ 516 (696)
.++.+ ++++.+++++||+.+. ||++.+++|+.++.+..|++++++ |+|++ . ...+.++
T Consensus 198 -------~~~~~----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~------~---~~~~~~~ 256 (375)
T 3beo_A 198 -------VLEKL----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMN------P---VVRETAN 256 (375)
T ss_dssp -------HHHTT----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSC------H---HHHHHHH
T ss_pred -------HHHhc----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCC------H---HHHHHHH
Confidence 00111 2344578899999886 999999999999987778898654 65544 0 1122333
Q ss_pred HHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcC-CCCcchhhccCCeE
Q 005444 517 ELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC-HGGPAEIIEHGASG 595 (696)
Q Consensus 517 ~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~-~gG~~EiI~dg~~G 595 (696)
+++ +..++|+|+| .++..++..+|+. +|++|.|| |.+++|||+||+|||+|+ .||..|++.++ +|
T Consensus 257 ~~~---~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g 322 (375)
T 3beo_A 257 DIL---GDYGRIHLIE----PLDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TL 322 (375)
T ss_dssp HHH---TTCTTEEEEC----CCCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SE
T ss_pred HHh---hccCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ce
Confidence 332 3346899998 5666789999995 99999998 777999999999999996 59999999888 99
Q ss_pred EEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 596 FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 596 ~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
+++++ |+++++++|.+++ +|++.+++|+++++++. +.|+|+.+++.+.+++
T Consensus 323 ~~v~~-d~~~la~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 323 KLAGT-DEETIFSLADELL----SDKEAHDKMSKASNPYG-DGRASERIVEAILKHF 373 (375)
T ss_dssp EECCS-CHHHHHHHHHHHH----HCHHHHHHHCCCCCTTC-CSCHHHHHHHHHHHHT
T ss_pred EEcCC-CHHHHHHHHHHHH----hChHhHhhhhhcCCCCC-CCcHHHHHHHHHHHHh
Confidence 99987 9999999997776 79999999999998876 6899999999998875
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=1.7e-28 Score=265.74 Aligned_cols=292 Identities=11% Similarity=0.083 Sum_probs=203.1
Q ss_pred HHHHHHHHHhCCCCeEEEEeCC-CchHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhh
Q 005444 280 DVGSEITAELQGFPDFIIGNYS-DGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN 358 (696)
Q Consensus 280 ~~~~~i~~~~~~~pDvIh~h~~-~~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~ 358 (696)
.+.+.+.+. +||+||+|.. ..++.+.++++..++|++++.|++.... .|..+.. .....+..+
T Consensus 77 ~l~~~l~~~---~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~~~-------~~~~~~~~~ 140 (384)
T 1vgv_A 77 GLKPILAEF---KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPWPE-------EANRTLTGH 140 (384)
T ss_dssp HHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSSTTH-------HHHHHHHHT
T ss_pred HHHHHHHHh---CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCCch-------HhhHHHHHh
Confidence 344444443 8999999976 4456667778889999999988763211 0100000 001112345
Q ss_pred cCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCC-cCCCCCCCchH--HHHHhhhhcch
Q 005444 359 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEK--QKRLTALHGSI 435 (696)
Q Consensus 359 ~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGv-D~~~f~p~~~~--~~r~~~~~~~~ 435 (696)
.+|.++++|+...+... ..|++ ..++.+++||+ |...+.+.... ....
T Consensus 141 ~~d~ii~~s~~~~~~l~--------------------~~g~~--~~~i~vi~n~~~d~~~~~~~~~~~~~~~~------- 191 (384)
T 1vgv_A 141 LAMYHFSPTETSRQNLL--------------------RENVA--DSRIFITGNTVIDALLWVRDQVMSSDKLR------- 191 (384)
T ss_dssp TCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHTTTCHHHH-------
T ss_pred hccEEEcCcHHHHHHHH--------------------HcCCC--hhhEEEeCChHHHHHHhhhhccccchhhh-------
Confidence 69999999987654211 01332 56899999995 43221110000 0000
Q ss_pred hhhcCCccccccccC-CCCCC-CCCEEEEEcccccc-CChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHH
Q 005444 436 EQLLFDPEQNDEHVG-TLSDR-SKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEI 512 (696)
Q Consensus 436 ~~~l~~~~~~~~~~g-~l~~~-~k~iIl~vGRL~~~-Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~ 512 (696)
.+.++.+| + ++ ++.+++++||+.+. ||++.+++|+.++.+..++++|+++++... ...
T Consensus 192 -------~~~~~~~~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~----------~~~ 252 (384)
T 1vgv_A 192 -------SELAANYPFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP----------NVR 252 (384)
T ss_dssp -------HHHHTTCTTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HHH
T ss_pred -------HHHHHhcccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH----------HHH
Confidence 01112344 3 33 34578899999986 999999999999987778999988644211 123
Q ss_pred HHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCC-CCcchhhcc
Q 005444 513 EKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH-GGPAEIIEH 591 (696)
Q Consensus 513 ~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~-gG~~EiI~d 591 (696)
+.+++++. ..++|+|+| .++..++..+|+. ||+||.|| |.+++|||+||+|||+|+. ||..|++.+
T Consensus 253 ~~l~~~~~---~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~ 319 (384)
T 1vgv_A 253 EPVNRILG---HVKNVILID----PQEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTA 319 (384)
T ss_dssp HHHHHHHT---TCTTEEEEC----CCCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHH
T ss_pred HHHHHHhh---cCCCEEEeC----CCCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhC
Confidence 44555443 236899988 5556799999995 99999999 4458999999999999986 999999988
Q ss_pred CCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 005444 592 GASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVY 655 (696)
Q Consensus 592 g~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~y 655 (696)
| +|+++++ |+++++++|.+++ +||+.+++|+++++++. +.|+|+.+++.+.++|+..
T Consensus 320 g-~g~lv~~-d~~~la~~i~~ll----~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 320 G-TVRLVGT-DKQRIVEEVTRLL----KDENEYQAMSRAHNPYG-DGQACSRILEALKNNRISL 376 (384)
T ss_dssp T-SEEEECS-SHHHHHHHHHHHH----HCHHHHHHHHSSCCTTC-CSCHHHHHHHHHHHTCCCC
T ss_pred C-ceEEeCC-CHHHHHHHHHHHH----hChHHHhhhhhccCCCc-CCCHHHHHHHHHHHHHHhh
Confidence 8 9999988 9999999997776 79999999999998775 7899999999999877543
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=2.1e-27 Score=233.95 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=160.5
Q ss_pred ecCCCcCCCCC--CCch-----HHHHHhhhhcchhhhcCCccccccccCCCCCCCCCEEEEEcccc-ccCChHHHHHHHH
Q 005444 409 VSPGADMDIYF--PYSE-----KQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLD-HVKNMTGLVECYG 480 (696)
Q Consensus 409 IpnGvD~~~f~--p~~~-----~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~-~~Kgi~~Llea~~ 480 (696)
||||+|.+.|. |... ... .++.+|+ +++++|+|+||+. +.||++.+++++.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~------------------~r~~~~~---~~~~~i~~~G~~~~~~K~~~~li~a~~ 60 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKS------------------LLSKFGM---DEGVTFMFIGRFDRGQKGVDVLLKAIE 60 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHH------------------HHHHTTC---CSCEEEEEESCBCSSSSCHHHHHHHHH
T ss_pred CCCccChhhccccccccchhhHHHH------------------HHHHcCC---CCCCEEEEeeccccccCCHHHHHHHHH
Confidence 79999999998 7652 111 1233665 3456999999999 9999999999999
Q ss_pred Hhh--ccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccccCChhHHHHHHHccccEEEeC
Q 005444 481 KNS--QLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIADTKGAFVQP 557 (696)
Q Consensus 481 ~l~--~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~f-lG~~~~~v~~~el~~~la~aadvfV~P 557 (696)
.+. +..++++|+|+|++.. +..+.+++++++++ +|+| +| .++.+++..+++. +|++|+|
T Consensus 61 ~l~~~~~~~~~~l~i~G~~~~----------~~~~~l~~~~~~~~---~v~~~~g----~~~~~~~~~~~~~-ad~~l~p 122 (200)
T 2bfw_A 61 ILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG---NVKVITE----MLSREFVRELYGS-VDFVIIP 122 (200)
T ss_dssp HHTTSGGGGGEEEEEECCBCH----------HHHHHHHHHHHHCT---TEEEECS----CCCHHHHHHHHTT-CSEEEEC
T ss_pred HHHhhccCCCeEEEEECCCCh----------HHHHHHHHHHHhcC---CEEEEec----cCCHHHHHHHHHH-CCEEEEC
Confidence 997 6678999999999862 22677888898887 8999 99 7778899999995 9999999
Q ss_pred CCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHHH
Q 005444 558 AFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKE-NPSHWKKISDGGLKRIY 636 (696)
Q Consensus 558 S~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~-dp~~~~~m~~~a~~~v~ 636 (696)
|.+|+||++++|||+||+|||+|+.||..|++ ++.+|++++++|+++++++|.+++ . |++.+++|++++++++.
T Consensus 123 s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL----ELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp CSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999997776 7 99999999999999997
Q ss_pred HhCC
Q 005444 637 ERYT 640 (696)
Q Consensus 637 ~~ys 640 (696)
+ ||
T Consensus 198 ~-fs 200 (200)
T 2bfw_A 198 S-FS 200 (200)
T ss_dssp H-TC
T ss_pred h-cC
Confidence 7 86
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.94 E-value=2.4e-26 Score=219.77 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=141.7
Q ss_pred CCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccc
Q 005444 457 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 536 (696)
Q Consensus 457 k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~ 536 (696)
+++|+|+||+.+.||++.+++++..++ ..++++|+|+|+|+. .+.++++++++++ +|.| |
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~--~v~~-g---- 61 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPD------------EKKIKLLAQKLGV--KAEF-G---- 61 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTT------------HHHHHHHHHHHTC--EEEC-C----
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCcc------------HHHHHHHHHHcCC--eEEE-e----
Confidence 468999999999999999999999985 348999999999877 6788899999887 7999 9
Q ss_pred cCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCC-cEEE-cCCCCcchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 537 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGL-PTFA-TCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 537 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~Gl-PVva-t~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.++.+++..+++. +|++|+||.+|+||++++|||+||+ |||+ ++.||..+++.++.+ +++++|+++++++|.+++
T Consensus 62 ~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 62 FVNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp CCCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH
Confidence 6778999999995 9999999999999999999999998 9999 578899999987655 789999999999997776
Q ss_pred HhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005444 615 GKCKENPSHWKKISDGGLKRIYERYTWKIYSER 647 (696)
Q Consensus 615 ~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~ 647 (696)
.|++.+++|++++++++ ++|||+.++++
T Consensus 139 ----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 139 ----ENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp ----HCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred ----hCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 79999999999999998 89999998764
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.94 E-value=4e-25 Score=246.63 Aligned_cols=320 Identities=12% Similarity=0.070 Sum_probs=221.7
Q ss_pred HHHHHHHHhC-CCCeEEEEeCCCchHHHHHHhhc-CCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhh
Q 005444 281 VGSEITAELQ-GFPDFIIGNYSDGNLVASLLAYK-MGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN 358 (696)
Q Consensus 281 ~~~~i~~~~~-~~pDvIh~h~~~~~l~a~lla~~-~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~ 358 (696)
.+..+....+ ..-|+|..|+....+++..+.++ .+.++.+..|.-. |.+.+ |..+... ....-...+-
T Consensus 137 fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPf----Ps~e~-f~~Lp~~-----~r~ell~gll 206 (496)
T 3t5t_A 137 FADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPW----PSADY-WRILPKE-----IRTGILHGML 206 (496)
T ss_dssp HHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCC----CCHHH-HTTSCHH-----HHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCC----CCHHH-HhhCcHh-----HHHHHHHHHH
Confidence 3344444333 35689999999988888877664 4688999999642 32221 1111000 0011134688
Q ss_pred cCCEEEeccHHHHhhcccccccccccccccccccce--eecccccC--CCcEEEecCCCcCCCCCCCchHHHHHhhhhcc
Q 005444 359 NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR--VVHGIDVF--DPKFNIVSPGADMDIYFPYSEKQKRLTALHGS 434 (696)
Q Consensus 359 ~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~--~~~gi~~~--~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~ 434 (696)
.+|.|.+.|+..+...-+.... .+|++-. ...++... ..++.++|+|||.+.|.+......
T Consensus 207 ~~DligF~t~~y~~~Fl~~~~r-------~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~-------- 271 (496)
T 3t5t_A 207 PATTIGFFADRWCRNFLESVAD-------LLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLP-------- 271 (496)
T ss_dssp TSSEEEESSHHHHHHHHHHHHH-------HCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCC--------
T ss_pred hCCEEEEecHHHHHHHHHHHHH-------HhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHH--------
Confidence 9999999998776532221110 1111000 00011111 237889999999999977532100
Q ss_pred hhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCC---eEEEEEeCccCCCCCcchHHHHH
Q 005444 435 IEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLREL---VNLVVVAGYIDVNKSKDREEIAE 511 (696)
Q Consensus 435 ~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~---~~LvIvG~g~~~~~~~d~e~~~~ 511 (696)
...++.+| ++++|+++||+++.||+..+++|| ++.+.+|+ +.|++||.... ....+..+.
T Consensus 272 --------~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr---~~~~~y~~l 334 (496)
T 3t5t_A 272 --------EGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR---LYVPANADY 334 (496)
T ss_dssp --------TTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC---TTSHHHHHH
T ss_pred --------HHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC---CCchHHHHH
Confidence 11122233 578999999999999999999999 88766665 67888885422 112344455
Q ss_pred HHHHHHHHHHcCCC---CcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcC---CcEEEcCCCCc
Q 005444 512 IEKMHELMKTYKLD---GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCG---LPTFATCHGGP 585 (696)
Q Consensus 512 ~~~l~~li~~~~L~---~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~G---lPVvat~~gG~ 585 (696)
.+++.+++.+.+.. ..|+|+| .++.+++..+|+ +||+||+||.+||||++++|||+|| .|+|+|..+|.
T Consensus 335 ~~~l~~lv~~in~~~g~~~V~f~g----~v~~~el~aly~-~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa 409 (496)
T 3t5t_A 335 VHRVETAVAEANAELGSDTVRIDN----DNDVNHTIACFR-RADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGA 409 (496)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEE----CCCHHHHHHHHH-HCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTT
T ss_pred HHHHHHHHHHhccccCCcCEEEeC----CCCHHHHHHHHH-hccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCC
Confidence 66677777665321 1699998 678899999999 5999999999999999999999997 89999999999
Q ss_pred chhhccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 586 AEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 586 ~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
.+.+ +.+|++++|.|++++|++|.+++. .+++.++++.++.++++ .++++...++.+++-++
T Consensus 410 ~~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~ 471 (496)
T 3t5t_A 410 AEVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLA 471 (496)
T ss_dssp HHHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHH
T ss_pred HHHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHh
Confidence 9988 347999999999999999988873 56788899999999998 88999999999887664
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.92 E-value=9.2e-25 Score=236.16 Aligned_cols=269 Identities=13% Similarity=0.103 Sum_probs=180.2
Q ss_pred CCCeEEEEeCCCc-hHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHH
Q 005444 291 GFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQ 369 (696)
Q Consensus 291 ~~pDvIh~h~~~~-~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~ 369 (696)
.+||+||+|.... ++.+.++++..++|++++.|+... +. .+.... ......+..+.+|.++++|..
T Consensus 90 ~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--~~----~~~~~~-------~~~~~~~~~~~~~~~~~~s~~ 156 (376)
T 1v4v_A 90 MGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS--GN----LKEPFP-------EEANRRLTDVLTDLDFAPTPL 156 (376)
T ss_dssp TTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC--SC----TTSSTT-------HHHHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc--cc----ccCCCc-------hHHHHHHHHHHhceeeCCCHH
Confidence 4899999997643 455677888899998754443311 10 000000 001123345679999999987
Q ss_pred HHhhcccccccccccccccccccceeecccccCCCcEEEecCCC-cCCCCCCCchHHHHHhhhhcchhhhcCCccccccc
Q 005444 370 EIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 448 (696)
Q Consensus 370 ~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGv-D~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 448 (696)
..+...+ .|++ +.++.+++|++ |...+.+ .+ + +.++.
T Consensus 157 ~~~~l~~--------------------~g~~--~~ki~vi~n~~~d~~~~~~-----~~-----~----------~~~~~ 194 (376)
T 1v4v_A 157 AKANLLK--------------------EGKR--EEGILVTGQTGVDAVLLAA-----KL-----G----------RLPEG 194 (376)
T ss_dssp HHHHHHT--------------------TTCC--GGGEEECCCHHHHHHHHHH-----HH-----C----------CCCTT
T ss_pred HHHHHHH--------------------cCCC--cceEEEECCchHHHHhhhh-----hh-----h----------HHHHh
Confidence 6542110 1332 56899999965 4221100 00 0 01111
Q ss_pred cCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEE-eCccCCCCCcchHHHHHHHHHHHHHHHcCCCCc
Q 005444 449 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 527 (696)
Q Consensus 449 ~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIv-G~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~ 527 (696)
+ ++++++++++||+...||++.+++|+.++.+..|+++|+++ |+++. ..+.+++++.. .++
T Consensus 195 ~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~-----------~~~~l~~~~~~---~~~ 256 (376)
T 1v4v_A 195 L----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPV-----------VREAVFPVLKG---VRN 256 (376)
T ss_dssp C----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHH-----------HHHHHHHHHTT---CTT
T ss_pred c----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHH-----------HHHHHHHHhcc---CCC
Confidence 1 23445778899998889999999999999877788999886 54431 23455555432 458
Q ss_pred EEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CCCCcchhhccCCeEEEECCCCHHHH
Q 005444 528 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEIIEHGASGFHIDPYHPDQA 606 (696)
Q Consensus 528 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat-~~gG~~EiI~dg~~G~l~~p~d~e~l 606 (696)
|+|+| .+...++..+|+. ||+||.|| + |+ ++|||+||+|||++ +.||..+++.++ +|++++ .|++++
T Consensus 257 v~~~g----~~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~l 324 (376)
T 1v4v_A 257 FVLLD----PLEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGV 324 (376)
T ss_dssp EEEEC----CCCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHH
T ss_pred EEEEC----CCCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHH
Confidence 99997 4555688999994 99999998 3 44 88999999999998 679999988655 899996 499999
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 607 AELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 607 a~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
+++|.+++ .|++.+++|++++ +.|.|...++++.+++.
T Consensus 325 a~~i~~ll----~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 325 YRVVKGLL----ENPEELSRMRKAK-----NPYGDGKAGLMVARGVA 362 (376)
T ss_dssp HHHHHHHH----TCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHH----hChHhhhhhcccC-----CCCCCChHHHHHHHHHH
Confidence 99997776 8999999998643 44565555555555543
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.91 E-value=2.9e-23 Score=226.13 Aligned_cols=206 Identities=11% Similarity=0.118 Sum_probs=157.7
Q ss_pred HhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcc
Q 005444 355 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGS 434 (696)
Q Consensus 355 ~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~ 434 (696)
..++.+|.|++.|+..++...+ .|+ + ++.+|+||. |.+.....
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~--------------------~g~---~-ki~vi~n~~----f~~~~~~~--------- 191 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKT--------------------FGA---K-RVFSCGNLK----FICQKGKG--------- 191 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHT--------------------TTC---C-SEEECCCGG----GCCCCCSC---------
T ss_pred HHHHhCCEEEECCHHHHHHHHH--------------------cCC---C-eEEEcCCCc----cCCCcChh---------
Confidence 4678999999999987653211 122 3 899999973 22211000
Q ss_pred hhhhcCCccccccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHH
Q 005444 435 IEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEK 514 (696)
Q Consensus 435 ~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~ 514 (696)
. .-.++++++.|+ ..||++.|++|+.++.+..|+++|+|+|+|++ ..++
T Consensus 192 ------------~------~l~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~-----------~~~~ 240 (374)
T 2xci_A 192 ------------I------KLKGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIE-----------NAKI 240 (374)
T ss_dssp ------------C------CCSSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGG-----------GHHH
T ss_pred ------------h------hhcCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHH-----------HHHH
Confidence 0 011266776665 46899999999999988889999999998875 1246
Q ss_pred HHHHHHHcCCC--------CcEEEeccccccCChhHHHHHHHccccEEEeCCC-CCCCcHHHHHHHHcCCcEEEc-CCCC
Q 005444 515 MHELMKTYKLD--------GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-YEAFGLTVVEAMTCGLPTFAT-CHGG 584 (696)
Q Consensus 515 l~~li~~~~L~--------~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-~E~fGltvlEAMa~GlPVvat-~~gG 584 (696)
++++++++++. ++|.+.|. .+++..+|+ .+|++++||. .|++|++++|||+||+|||++ +.+|
T Consensus 241 l~~~~~~~gl~~~~~~~~~~~v~~~~~------~~dl~~~y~-~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~ 313 (374)
T 2xci_A 241 FEKKARDFGFKTSFFENLEGDVILVDR------FGILKELYP-VGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHK 313 (374)
T ss_dssp HHHHHHHTTCCEEETTCCCSSEEECCS------SSCHHHHGG-GEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTT
T ss_pred HHHHHHHCCCceEEecCCCCcEEEECC------HHHHHHHHH-hCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccC
Confidence 88889998886 46888773 246889999 4999888765 477899999999999999986 7899
Q ss_pred cchhhccC-CeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCC
Q 005444 585 PAEIIEHG-ASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYT 640 (696)
Q Consensus 585 ~~EiI~dg-~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ys 640 (696)
+.|++.+. .+|++++++|+++++++|.+++ +| +.+++|+++|++++.+++.
T Consensus 314 ~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 314 VNDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp SHHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 99988763 5788888999999999998777 68 8999999999999866443
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=7.5e-24 Score=205.77 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=133.8
Q ss_pred CCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHH--HcCCCCcEEEe
Q 005444 454 DRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK--TYKLDGQFRWI 531 (696)
Q Consensus 454 ~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~--~~~L~~~V~fl 531 (696)
+.++++|+|+||+.+.||++.+++++.++ ++++|+|+|++.. .+.++++++ ++++.++|.|+
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~------------~~~l~~~~~~~~~~l~~~v~~~ 83 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK------------GDHAERYARKIMKIAPDNVKFL 83 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT------------TSTHHHHHHHHHHHSCTTEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc------------HHHHHHHHHhhhcccCCcEEEe
Confidence 67788999999999999999999999987 5799999999876 345777777 77889999999
Q ss_pred ccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEEECCCCHHHHHHHHH
Q 005444 532 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMA 611 (696)
Q Consensus 532 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~ 611 (696)
| .++.+++..+++. +|++|+||..|+||++++|||+||+|||+|+.|+..|++.++.+|+++ +.|+++++++|.
T Consensus 84 g----~~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~ 157 (177)
T 2f9f_A 84 G----SVSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMK 157 (177)
T ss_dssp E----SCCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHH
T ss_pred C----CCCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHH
Confidence 9 7788999999995 999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHHHhhhcCHHH-HHHHHHH
Q 005444 612 DFFGKCKENPSH-WKKISDG 630 (696)
Q Consensus 612 ~~l~~l~~dp~~-~~~m~~~ 630 (696)
+++ +|++. ++.++++
T Consensus 158 ~l~----~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 158 KVS----KNPDKFKKDCFRR 173 (177)
T ss_dssp HHH----HCTTTTHHHHHHH
T ss_pred HHH----hCHHHHHHHHHHH
Confidence 776 67764 4434333
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.84 E-value=5e-20 Score=201.23 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=127.1
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 534 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~ 534 (696)
+++.++++.|++. .|+.+.+.+++..+.+. ++++++++++.... +.+. ++.++|++.|+
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~-----------~~l~------~~~~~v~~~~~- 299 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDV-----------SGLG------EVPANVRLESW- 299 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCC-----------TTCC------CCCTTEEEESC-
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCCh-----------hhhc------cCCCcEEEeCC-
Confidence 4455678889986 77888888888877654 57777776654300 0111 35678999994
Q ss_pred cccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--CHHHHHH
Q 005444 535 TNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAAE 608 (696)
Q Consensus 535 ~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d~e~la~ 608 (696)
++ +..+++ .+|+||.++ .+.+++|||+||+|+|++..++ ..+.+.+++.|++++++ |++++++
T Consensus 300 ---~~---~~~~l~-~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ 368 (412)
T 3otg_A 300 ---VP---QAALLP-HVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368 (412)
T ss_dssp ---CC---HHHHGG-GCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHH
T ss_pred ---CC---HHHHHh-cCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHH
Confidence 32 567777 599999875 3489999999999999976654 78888888899999987 8999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 609 LMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 609 ~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
+|.+++ +||+.+++|++.+++.. +.++|+.+++.+++++.
T Consensus 369 ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 369 AAKRLL----AEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC
T ss_pred HHHHHH----hCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 997776 79999999999998876 78899999999999874
No 30
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.82 E-value=1.6e-19 Score=193.88 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=172.0
Q ss_pred CCCCeEEEEeCCCch---HHHHHHhh--cCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEE
Q 005444 290 QGFPDFIIGNYSDGN---LVASLLAY--KMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFII 364 (696)
Q Consensus 290 ~~~pDvIh~h~~~~~---l~a~lla~--~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~II 364 (696)
-.++|+|+.+++... ..+.++.+ +.++|+|+.+|++++..+. ...+ . ...|...++.||.||
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~---------~~~~--~--~~~E~~~y~~aD~Ii 138 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS---------GNFY--L--MDRTIAYYNKADVVV 138 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG---------GGGG--G--HHHHHHHHTTCSEEE
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc---------cchh--h--HHHHHHHHHHCCEEE
Confidence 458999998877641 22344444 4599999999998664321 1111 1 124788999999999
Q ss_pred eccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccc
Q 005444 365 TSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQ 444 (696)
Q Consensus 365 t~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~ 444 (696)
+.|+...+... ..|++ ..++.++++. |... +..
T Consensus 139 ~~S~~~~~~l~--------------------~~G~~--~~ki~~~~~~-~~~~--~~~---------------------- 171 (339)
T 3rhz_A 139 APSQKMIDKLR--------------------DFGMN--VSKTVVQGMW-DHPT--QAP---------------------- 171 (339)
T ss_dssp ESCHHHHHHHH--------------------HTTCC--CSEEEECCSC-CCCC--CCC----------------------
T ss_pred ECCHHHHHHHH--------------------HcCCC--cCceeecCCC-CccC--ccc----------------------
Confidence 99998765221 12332 3565444332 2110 100
Q ss_pred cccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCC
Q 005444 445 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 524 (696)
Q Consensus 445 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L 524 (696)
... +.++++|+|+|++.+...+..+ .++++|+|+|+|++ . .+
T Consensus 172 ----~~~--~~~~~~i~yaG~l~k~~~L~~l----------~~~~~f~ivG~G~~------------~----------~l 213 (339)
T 3rhz_A 172 ----MFP--AGLKREIHFPGNPERFSFVKEW----------KYDIPLKVYTWQNV------------E----------LP 213 (339)
T ss_dssp ----CCC--CEEEEEEEECSCTTTCGGGGGC----------CCSSCEEEEESCCC------------C----------CC
T ss_pred ----ccc--cCCCcEEEEeCCcchhhHHHhC----------CCCCeEEEEeCCcc------------c----------Cc
Confidence 000 3356789999999964333221 37899999999987 1 24
Q ss_pred CCcEEEeccccccCChhHHHHHHHccccEEEeCCC-------CCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCCeEEE
Q 005444 525 DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-------YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFH 597 (696)
Q Consensus 525 ~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-------~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~~G~l 597 (696)
. +|.|+| .++.+++..+++. +|+.+++.. ...+|.++.||||||+|||+++.|+..+++.++.+|+.
T Consensus 214 ~-nV~f~G----~~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~ 287 (339)
T 3rhz_A 214 Q-NVHKIN----YRPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWI 287 (339)
T ss_dssp T-TEEEEE----CCCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEE
T ss_pred C-CEEEeC----CCCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEE
Confidence 4 899999 7889999999984 677776511 12468999999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005444 598 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLM 649 (696)
Q Consensus 598 ~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~ 649 (696)
++ +.++++++|.. -+++.+++|++++++.. ++++|..++++.+
T Consensus 288 ~~--~~~e~~~~i~~------l~~~~~~~m~~na~~~a-~~~~~~~f~k~~l 330 (339)
T 3rhz_A 288 VK--DVEEAIMKVKN------VNEDEYIELVKNVRSFN-PILRKGFFTRRLL 330 (339)
T ss_dssp ES--SHHHHHHHHHH------CCHHHHHHHHHHHHHHT-HHHHTTHHHHHHH
T ss_pred eC--CHHHHHHHHHH------hCHHHHHHHHHHHHHHH-HHhhccHHHHHHH
Confidence 97 58888888854 25778999999999875 5566666655544
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.80 E-value=9.4e-18 Score=181.94 Aligned_cols=345 Identities=14% Similarity=0.046 Sum_probs=203.8
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCCCCCCccccceeee
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 241 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~~~g~~~~~~~e~i 241 (696)
|..||+|.+- -|||-..-.+ .++++|+++||+|. ++|... |.. .+.+
T Consensus 1 M~~~i~i~~G-------------GTgGHi~pal--------ala~~L~~~g~~V~----~vg~~~----g~e----~~~v 47 (365)
T 3s2u_A 1 MKGNVLIMAG-------------GTGGHVFPAL--------ACAREFQARGYAVH----WLGTPR----GIE----NDLV 47 (365)
T ss_dssp --CEEEEECC-------------SSHHHHHHHH--------HHHHHHHHTTCEEE----EEECSS----STH----HHHT
T ss_pred CCCcEEEEcC-------------CCHHHHHHHH--------HHHHHHHhCCCEEE----EEECCc----hHh----hchh
Confidence 5567877541 2567544444 67788899999998 776432 110 0001
Q ss_pred cCCCceEEEEecccCcccccccccccCCC-cccHHHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEE
Q 005444 242 SGTEHTHILRVPFRSEKGILRQWISRFDV-WPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 320 (696)
Q Consensus 242 ~~~~~v~I~rvp~~~~~~~~~~wisr~~i-~p~l~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~ 320 (696)
+ ..+..+..+|..+..+. ........ +..+ .-...+.+.+.+. +||+|+++....+..+.++++.+|+|+++
T Consensus 48 ~-~~g~~~~~i~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~~---~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 48 P-KAGLPLHLIQVSGLRGK--GLKSLVKAPLELL-KSLFQALRVIRQL---RPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp G-GGTCCEEECC----------------CHHHHH-HHHHHHHHHHHHH---CCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred h-hcCCcEEEEECCCcCCC--CHHHHHHHHHHHH-HHHHHHHHHHHhc---CCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 1 12344445554322110 00011111 1111 1112233344443 99999999888777788889999999885
Q ss_pred EecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccc
Q 005444 321 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 400 (696)
Q Consensus 321 t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~ 400 (696)
.-.+... .+ +.++..+.++.|.+..+...
T Consensus 121 he~n~~~--------G~--------------~nr~l~~~a~~v~~~~~~~~----------------------------- 149 (365)
T 3s2u_A 121 HEQNAVA--------GT--------------ANRSLAPIARRVCEAFPDTF----------------------------- 149 (365)
T ss_dssp EECSSSC--------CH--------------HHHHHGGGCSEEEESSTTSS-----------------------------
T ss_pred Eecchhh--------hh--------------HHHhhccccceeeecccccc-----------------------------
Confidence 3322110 00 11234556787766543210
Q ss_pred cCCCcEEEecCCCcCCCCCCCchHHHHHhhhhcchhhhcCCccccccccCCCCCCCCCE-EEEEccccccCChHHHHHHH
Q 005444 401 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDHVKNMTGLVECY 479 (696)
Q Consensus 401 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~~Kgi~~Llea~ 479 (696)
....+..++.|.+..+.+.+... ..+. +++++. +++.|++...+..+.+.+++
T Consensus 150 ~~~~k~~~~g~pvr~~~~~~~~~------------------------~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 150 PASDKRLTTGNPVRGELFLDAHA------------------------RAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp CC---CEECCCCCCGGGCCCTTS------------------------SCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred cCcCcEEEECCCCchhhccchhh------------------------hccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 01446677788777655433211 1232 444554 55667888888888888998
Q ss_pred HHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCC
Q 005444 480 GKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF 559 (696)
Q Consensus 480 ~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~ 559 (696)
..+... .++.++++++..+ .+.+.+..++.+. ++.+.++.. ++..+|+ +||++|.-+
T Consensus 204 ~~l~~~-~~~~vi~~~G~~~------------~~~~~~~~~~~~~--~~~v~~f~~------dm~~~l~-~aDlvI~ra- 260 (365)
T 3s2u_A 204 AQVPLE-IRPAIRHQAGRQH------------AEITAERYRTVAV--EADVAPFIS------DMAAAYA-WADLVICRA- 260 (365)
T ss_dssp HTSCTT-TCCEEEEECCTTT------------HHHHHHHHHHTTC--CCEEESCCS------CHHHHHH-HCSEEEECC-
T ss_pred Hhcccc-cceEEEEecCccc------------cccccceeccccc--ccccccchh------hhhhhhc-cceEEEecC-
Confidence 877543 3455555544433 3445555566554 577788544 4778888 499999753
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCCCCc--------chhhccCCeEEEECCC--CHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q 005444 560 YEAFGLTVVEAMTCGLPTFATCHGGP--------AEIIEHGASGFHIDPY--HPDQAAELMADFFGKCKENPSHWKKISD 629 (696)
Q Consensus 560 ~E~fGltvlEAMa~GlPVvat~~gG~--------~EiI~dg~~G~l~~p~--d~e~la~~I~~~l~~l~~dp~~~~~m~~ 629 (696)
-++|+.|+|++|+|+|....+.. ++.+.+.+.|++++.. +++.++++|.+++ .||+.+++|++
T Consensus 261 ---G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll----~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ---GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL----MHPETLRSMAD 333 (365)
T ss_dssp ---CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH----HCTHHHHHHHH
T ss_pred ---CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH----CCHHHHHHHHH
Confidence 47899999999999998866542 3456677789998765 5889999997776 89999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 630 GGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 630 ~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
++++.. .....+.+++.++++.+.
T Consensus 334 ~a~~~~-~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 334 QARSLA-KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHTC-CTTHHHHHHHHHHHHC--
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcc
Confidence 998765 455677888888877553
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.80 E-value=5.9e-18 Score=186.32 Aligned_cols=162 Identities=11% Similarity=0.047 Sum_probs=119.3
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEE-EEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNL-VVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~L-vIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
++.++++++|++. .++.+.+.+++..+.+. +++++ +++|++.+ .+.+ + .+.++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~------------~~~l----~--~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVT------------PAEL----G--ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---C------------GGGG----C--SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCC------------hHHh----c--cCCCCeEEEec
Confidence 3456788999998 56656655555555443 46887 46787654 1111 1 24678999994
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--CHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 607 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d~e~la 607 (696)
++.. .+++ .+|+||..+ .+++++|||++|+|+|++..++ ..+.+.+.+.|+.++++ |+++++
T Consensus 291 ----~~~~---~~l~-~ad~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 358 (430)
T 2iyf_A 291 ----VPQL---AILR-QADLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLR 358 (430)
T ss_dssp ----CCHH---HHHT-TCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHH
T ss_pred ----CCHH---HHhh-ccCEEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHH
Confidence 4433 5677 599999864 2379999999999999998765 46677778899999887 889999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 608 ELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 608 ~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
++|.+++ .|++.++++++.+++.. +.++|+.+++.++++++
T Consensus 359 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 359 ETALALV----DDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELP 399 (430)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSC
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhh
Confidence 9997776 79999999999988776 56899999999888764
No 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.78 E-value=8.4e-19 Score=190.51 Aligned_cols=162 Identities=11% Similarity=0.005 Sum_probs=125.3
Q ss_pred CCCCEEEEEccccccCCh-HHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKNM-TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi-~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+++.+++++|++...|+. ..+++++.+. ...|+++++++|++.+ .+.+. ++.++|++.|
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~------------~~~l~------~~~~~v~~~~- 276 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH------------RALLT------DLPDNARIAE- 276 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG------------GGGCT------TCCTTEEECC-
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc------------hhhcc------cCCCCEEEec-
Confidence 345567788999876555 7777777666 6667899999998764 11111 3567899999
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CCCCcchhhccCCeEEEECC----CCHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT----CHGGPAEIIEHGASGFHIDP----YHPDQ 605 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat----~~gG~~EiI~dg~~G~l~~p----~d~e~ 605 (696)
.++..++. + +||++|.. +.+.+++|||++|+|+|+. +..+..+.+.+.+.|+.+++ .|+++
T Consensus 277 ---~~~~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~ 345 (391)
T 3tsa_A 277 ---SVPLNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQ 345 (391)
T ss_dssp ---SCCGGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHH
T ss_pred ---cCCHHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHH
Confidence 45555544 5 69999964 5557999999999999994 44567788888899999998 78999
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 606 AAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 606 la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
++++|.+++ .||+.++++++.+.+.. +..+|+.+++.++++.
T Consensus 346 l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 346 FTDSIATVL----GDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTA 387 (391)
T ss_dssp HHHHHHHHH----TCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHH----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 999997766 89999999998887765 7899999999888764
No 34
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.77 E-value=1.4e-18 Score=189.52 Aligned_cols=159 Identities=10% Similarity=0.009 Sum_probs=105.2
Q ss_pred CCCCEEEEEccccccCC-------hHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCc
Q 005444 455 RSKPIVFSMARLDHVKN-------MTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQ 527 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kg-------i~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~ 527 (696)
+.+++++++|++...|+ ...+..++..+.+. ++++++++++.+ .+.+. .+.++
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~------------~~~l~------~~~~~ 285 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL--GFEVVVAVSDKL------------AQTLQ------PLPEG 285 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG--TCEEEECCCC--------------------------CCTT
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC--CCEEEEEeCCcc------------hhhhc------cCCCc
Confidence 34567888999976652 33333333334333 588999888754 22222 35678
Q ss_pred EEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CCCCcchhhccCCeEEEECCC--
Q 005444 528 FRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT----CHGGPAEIIEHGASGFHIDPY-- 601 (696)
Q Consensus 528 V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat----~~gG~~EiI~dg~~G~l~~p~-- 601 (696)
|++.| .++ +..+++ .+|++|.. +.+.+++|||+||+|+|+. +..+..+.+.+.+.|+.+++.
T Consensus 286 v~~~~----~~~---~~~ll~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~ 353 (398)
T 4fzr_A 286 VLAAG----QFP---LSAIMP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQA 353 (398)
T ss_dssp EEEES----CCC---HHHHGG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC----
T ss_pred EEEeC----cCC---HHHHHh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccC
Confidence 99999 444 445566 59999964 5578999999999999994 555778888899999999887
Q ss_pred CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005444 602 HPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMT 650 (696)
Q Consensus 602 d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ 650 (696)
|+++++++|.+++ .||+.++++++.+++.. +..+|+.+++.+++
T Consensus 354 ~~~~l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 354 GVESVLAACARIR----DDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp ---CHHHHHHHHH----HCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHH----hCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 7788999997766 79999999999988775 78999999887753
No 35
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.75 E-value=1.2e-17 Score=183.22 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCCc-hHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhH
Q 005444 276 TFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADL 354 (696)
Q Consensus 276 ~f~~~~~~~i~~~~~~~pDvIh~h~~~~-~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~ 354 (696)
.....+.+.+.+. +||+||++.... ++.+.+.+++.++|++++.+++ .+ +.... .|. ... ...
T Consensus 98 ~~~~~l~~~l~~~---kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~-rs-~~~~~-~~~--~~~--------~r~ 161 (396)
T 3dzc_A 98 KILLGMQQVLSSE---QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL-RT-GNIYS-PWP--EEG--------NRK 161 (396)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC-CC-SCTTS-STT--HHH--------HHH
T ss_pred HHHHHHHHHHHhc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-ccccc-CCc--HHH--------HHH
Confidence 3334455555544 999999988665 4666788899999976544333 11 11000 010 000 011
Q ss_pred HhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCC-CcCCCCCCCchHHHHHhhhhc
Q 005444 355 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHG 433 (696)
Q Consensus 355 ~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~ 433 (696)
..-+.+|.++++|+...+... ..|++ +.++.++.|. +|...+.+..... ....
T Consensus 162 ~~~~~a~~~~~~se~~~~~l~--------------------~~G~~--~~ki~vvGn~~~d~~~~~~~~~~~--~~~~-- 215 (396)
T 3dzc_A 162 LTAALTQYHFAPTDTSRANLL--------------------QENYN--AENIFVTGNTVIDALLAVREKIHT--DMDL-- 215 (396)
T ss_dssp HHHHTCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHHHHHHH--CHHH--
T ss_pred HHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cCcEEEECCcHHHHHHHhhhhccc--chhh--
Confidence 234678999999987654211 12333 6789999884 4532221110000 0000
Q ss_pred chhhhcCCccccccccCCCCCCCCCE-EEEEccccc-cCChHHHHHHHHHhhccCCCeEEEEE-eCccCCCCCcchHHHH
Q 005444 434 SIEQLLFDPEQNDEHVGTLSDRSKPI-VFSMARLDH-VKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIA 510 (696)
Q Consensus 434 ~~~~~l~~~~~~~~~~g~l~~~~k~i-Il~vGRL~~-~Kgi~~Llea~~~l~~~~~~~~LvIv-G~g~~~~~~~d~e~~~ 510 (696)
..+.++.+|++ ++++++ +++.+|... .|++..+++|+.++.+.+|++++++. |.++.
T Consensus 216 --------~~~~r~~lg~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~----------- 275 (396)
T 3dzc_A 216 --------QATLESQFPML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPN----------- 275 (396)
T ss_dssp --------HHHHHHTCTTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHH-----------
T ss_pred --------HHHHHHHhCcc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChH-----------
Confidence 01122346632 334444 555656543 47899999999999877789999986 43321
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CCCCcchhh
Q 005444 511 EIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEII 589 (696)
Q Consensus 511 ~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat-~~gG~~EiI 589 (696)
..+.++++ .+..++|.+++ .+...++..+|+. ||++|.+| | |++ +|||+||+|+|++ +.++..|++
T Consensus 276 ~~~~l~~~---~~~~~~v~~~~----~lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~e~v 342 (396)
T 3dzc_A 276 VREPVNKL---LKGVSNIVLIE----PQQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERPEAV 342 (396)
T ss_dssp HHHHHHHH---TTTCTTEEEEC----CCCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCHHHH
T ss_pred HHHHHHHH---HcCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcchHHH
Confidence 12233332 34457899988 5666788899994 99999998 3 444 8999999999999 888888998
Q ss_pred ccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005444 590 EHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 651 (696)
Q Consensus 590 ~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~l 651 (696)
.+| +++++++ |+++++++|.+++ .|++.+++|++++. .|.....++++.++
T Consensus 343 ~~G-~~~lv~~-d~~~l~~ai~~ll----~d~~~~~~m~~~~~-----~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 343 AAG-TVKLVGT-NQQQICDALSLLL----TDPQAYQAMSQAHN-----PYGDGKACQRIADI 393 (396)
T ss_dssp HHT-SEEECTT-CHHHHHHHHHHHH----HCHHHHHHHHTSCC-----TTCCSCHHHHHHHH
T ss_pred HcC-ceEEcCC-CHHHHHHHHHHHH----cCHHHHHHHhhccC-----CCcCChHHHHHHHH
Confidence 877 5777764 8999999997766 79999999987654 34444555555443
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.73 E-value=8.9e-17 Score=174.44 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=115.2
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEE-EeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvI-vG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+.+.++++.|+....++ +.+.+++..+.+. + +++++ +|++.+ .+.+. .+.++|++.|+
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g~~~~------------~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQAFADT-P-WHVVMAIGGFLD------------PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHHHHTTS-S-CEEEEECCTTSC------------GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHHhcC-C-cEEEEEeCCcCC------------hhhhC------CCCCcEEEecC
Confidence 44567888999876552 3333344444332 3 66665 454433 11111 25678999994
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-----CCCCcchhhccCCeEEEECCC--CHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-----CHGGPAEIIEHGASGFHIDPY--HPDQA 606 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat-----~~gG~~EiI~dg~~G~l~~p~--d~e~l 606 (696)
++.. .+++ .+|++|..+ -..|++|||++|+|+|+. +..+.++.+.+.+.|..++++ +++++
T Consensus 289 ----~~~~---~ll~-~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l 356 (402)
T 3ia7_A 289 ----IPFH---SVLA-HARACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASI 356 (402)
T ss_dssp ----CCHH---HHHT-TEEEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHH
T ss_pred ----CCHH---HHHh-hCCEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHH
Confidence 4433 6667 599999864 237899999999999954 445678888888999999876 88999
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 607 AELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 607 a~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
+++|.+++ .|++.++++++.+.+.. +..+++..++.++++++
T Consensus 357 ~~~~~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 357 REAVERLA----ADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHh
Confidence 99997766 89999999988887665 77899999999988764
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.73 E-value=8.8e-17 Score=175.39 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=119.4
Q ss_pred CCCCEEEEEcccccc-CChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHV-KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~-Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+.+++++++|++... ++...+.+++..+.+. ++++++++++.+. +.+. ++.++|++.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~------------~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI------------SPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC------------GGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh------------hhhc------cCCCcEEEEcc
Confidence 345678889999765 4666666666666553 6899999988651 1111 45678999994
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCCCCcc--hhhccCCeEEEECCC--CHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFA----TCHGGPA--EIIEHGASGFHIDPY--HPDQ 605 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVva----t~~gG~~--EiI~dg~~G~l~~p~--d~e~ 605 (696)
++. ..+++ .+|+||.. +.+.|++|||++|+|+|+ .+.++.. +.+++.+.|+.+++. +.+.
T Consensus 291 ----~~~---~~ll~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~ 358 (398)
T 3oti_A 291 ----TPL---HTLLR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADL 358 (398)
T ss_dssp ----CCH---HHHHT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHH
T ss_pred ----CCH---HHHHh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHH
Confidence 443 45566 59999974 556799999999999999 5778888 999999999999876 5555
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 606 AAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 606 la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
++ +++ +||+.++++++.+.+.. +..+|+.+++.+++++
T Consensus 359 l~----~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 359 LR----RLI----GDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp HH----HHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HH----HHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 55 444 79999999998888765 7899999999998875
No 38
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.73 E-value=4e-17 Score=179.47 Aligned_cols=287 Identities=16% Similarity=0.131 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCCc-hHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhH
Q 005444 276 TFTEDVGSEITAELQGFPDFIIGNYSDG-NLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADL 354 (696)
Q Consensus 276 ~f~~~~~~~i~~~~~~~pDvIh~h~~~~-~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~ 354 (696)
.....+.+.+.+. +||+||++.... .+.+.+.+++.++|+++...++ .+ + +.++..... ....
T Consensus 101 ~~~~~l~~~l~~~---kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl-rs-~---~~~~~~p~~--------~~r~ 164 (403)
T 3ot5_A 101 RVMNGINEVIAAE---NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL-RT-W---NKYSPFPEE--------MNRQ 164 (403)
T ss_dssp HHHHHHHHHHHHH---CCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC-CC-S---CTTSSTTHH--------HHHH
T ss_pred HHHHHHHHHHHHc---CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-cc-c---ccccCCcHH--------HHHH
Confidence 3334455555544 999999998654 5556788899999976543332 11 0 100000000 0111
Q ss_pred HhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecC-CCcCCCCCCCchHHHHHhhhhc
Q 005444 355 IAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADMDIYFPYSEKQKRLTALHG 433 (696)
Q Consensus 355 ~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpn-GvD~~~f~p~~~~~~r~~~~~~ 433 (696)
..-+.+|.+++.|+...+... ..|++ +.++.++.| ++|...+.+.....
T Consensus 165 ~~~~~a~~~~~~se~~~~~l~--------------------~~Gi~--~~~i~vvGn~~~D~~~~~~~~~~~-------- 214 (403)
T 3ot5_A 165 LTGVMADIHFSPTKQAKENLL--------------------AEGKD--PATIFVTGNTAIDALKTTVQKDYH-------- 214 (403)
T ss_dssp HHHHHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCHHHHHHHHHSCTTCC--------
T ss_pred HHHHhcCEEECCCHHHHHHHH--------------------HcCCC--cccEEEeCCchHHHHHhhhhhhcc--------
Confidence 233458999999988654211 12333 678999987 45643322211000
Q ss_pred chhhhcCCccccccccCCCCCCCCCEEEEEccccc-cCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHH
Q 005444 434 SIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDH-VKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEI 512 (696)
Q Consensus 434 ~~~~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~~-~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~ 512 (696)
.+.++.+ ++++.++++.||... .|++..+++|+.++.+.+|+++++++++... ...
T Consensus 215 ---------~~~~~~l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~----------~~~ 271 (403)
T 3ot5_A 215 ---------HPILENL----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP----------AVR 271 (403)
T ss_dssp ---------CHHHHSC----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH----------HHH
T ss_pred ---------hHHHHhc----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH----------HHH
Confidence 0001111 223345667777654 3789999999999988788999998753211 012
Q ss_pred HHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CCCCcchhhcc
Q 005444 513 EKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT-CHGGPAEIIEH 591 (696)
Q Consensus 513 ~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat-~~gG~~EiI~d 591 (696)
+.++++ ++..++|+++| .+...++..+++. ||++|.+| |...+|||+||+|+|++ +.|+..|.+..
T Consensus 272 ~~l~~~---~~~~~~v~l~~----~l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~ 338 (403)
T 3ot5_A 272 EKAMAI---LGGHERIHLIE----PLDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEA 338 (403)
T ss_dssp HHHHHH---HTTCTTEEEEC----CCCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHH
T ss_pred HHHHHH---hCCCCCEEEeC----CCCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeC
Confidence 223322 34456899998 6666789999995 99999987 33348999999999999 78888898866
Q ss_pred CCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005444 592 GASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 651 (696)
Q Consensus 592 g~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~l 651 (696)
| +|+++++ |++++++++.+++ .|++.+++|++++..+. ...+++++++.+.++
T Consensus 339 g-~~~lv~~-d~~~l~~ai~~ll----~~~~~~~~m~~~~~~~g-~~~aa~rI~~~l~~~ 391 (403)
T 3ot5_A 339 G-TLKLIGT-NKENLIKEALDLL----DNKESHDKMAQAANPYG-DGFAANRILAAIKSH 391 (403)
T ss_dssp T-SEEECCS-CHHHHHHHHHHHH----HCHHHHHHHHHSCCTTC-CSCHHHHHHHHHHHH
T ss_pred C-cEEEcCC-CHHHHHHHHHHHH----cCHHHHHHHHhhcCccc-CCcHHHHHHHHHHHH
Confidence 6 8999876 8999999997766 79999999987654432 344555555555443
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.68 E-value=4.7e-15 Score=162.16 Aligned_cols=161 Identities=10% Similarity=0.013 Sum_probs=113.8
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEE-EeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVV-VAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvI-vG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+.+.++++.|++....+ ..+..++..+.+. + +++++ +|++.+ .+.+. .+.++|++.|
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~~-~-~~~v~~~g~~~~------------~~~l~------~~~~~v~~~~- 303 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFDGQ-P-WHVVMTLGGQVD------------PAALG------DLPPNVEAHR- 303 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHTTS-S-CEEEEECTTTSC------------GGGGC------CCCTTEEEES-
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHhcC-C-cEEEEEeCCCCC------------hHHhc------CCCCcEEEEe-
Confidence 44567788899865432 2333333333332 3 77777 454433 11111 3567899998
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CCCCcchhhccCCeEEEECCC--CHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT----CHGGPAEIIEHGASGFHIDPY--HPDQAA 607 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat----~~gG~~EiI~dg~~G~l~~p~--d~e~la 607 (696)
.++.. .+++ .+|++|..+ -..|++|||++|+|+|+. +....++.+.+.+.|..++++ ++++++
T Consensus 304 ---~~~~~---~ll~-~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~ 372 (415)
T 3rsc_A 304 ---WVPHV---KVLE-QATVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLL 372 (415)
T ss_dssp ---CCCHH---HHHH-HEEEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHH
T ss_pred ---cCCHH---HHHh-hCCEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHH
Confidence 44443 5566 499999864 237899999999999994 445567788888899999876 889999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 608 ELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 608 ~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
++|.+++ .|++.++++++.+.+.. +..+++.+++.++++++
T Consensus 373 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 373 AAVGAVA----ADPALLARVEAMRGHVR-RAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHH----TCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Confidence 9997766 89999999988877665 77899999998888764
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.66 E-value=3.8e-15 Score=161.35 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=114.5
Q ss_pred CCCEEEEEcccccc-------CChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcE
Q 005444 456 SKPIVFSMARLDHV-------KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 528 (696)
Q Consensus 456 ~k~iIl~vGRL~~~-------Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V 528 (696)
...+++++|++... +.+..+++++.++ ++++++++++.+ .+.+. . ++++|
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~------------~~~l~----~--~~~~v 266 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV------------AEALR----A--EVPQA 266 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH------------HHHHH----H--HCTTS
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC------------HHhhC----C--CCCce
Confidence 34578899999875 5566677776542 578888776532 22232 1 35689
Q ss_pred EEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--C
Q 005444 529 RWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--H 602 (696)
Q Consensus 529 ~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d 602 (696)
.+ | .++..+ +++ ++|+||.. +.++|++|||++|+|+|+...++ .++.+.+.+.|+.+++. +
T Consensus 267 ~~-~----~~~~~~---~l~-~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~ 333 (384)
T 2p6p_A 267 RV-G----WTPLDV---VAP-TCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDS 333 (384)
T ss_dssp EE-E----CCCHHH---HGG-GCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCC
T ss_pred EE-c----CCCHHH---HHh-hCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCC
Confidence 99 9 444444 456 59999986 34579999999999999997754 67777787899999875 7
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 603 PDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 603 ~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
+++++++|.+++ .|++.++++++.+.+.. ..-.-+..++.+.++.
T Consensus 334 ~~~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 334 TEAIADSCQELQ----AKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 899999997776 79999999988887664 4556777777666654
No 41
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.57 E-value=9.6e-15 Score=168.61 Aligned_cols=330 Identities=14% Similarity=0.050 Sum_probs=209.7
Q ss_pred CCeEEEEeCCCchHHHH-HHhhc--------------CCCcEEEEecCCCccCC---CCCCc------cHh---hhhhh-
Q 005444 292 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDSDI------YWK---KFDEK- 343 (696)
Q Consensus 292 ~pDvIh~h~~~~~l~a~-lla~~--------------~gip~v~t~H~l~~~~~---~~s~~------~~~---~~~~~- 343 (696)
+||+||+|.++++++.. ++... .+.+.++|.|++.+... +..-+ .+. .+...
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999999977655 43222 24578999999765432 10000 000 00000
Q ss_pred ------------------hhccchhhhhHHhhhcCCEEEeccHHHHhhcccc-cccccccccccccccceeecccccCCC
Q 005444 344 ------------------YHFSCQFTADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDP 404 (696)
Q Consensus 344 ------------------y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qy~~~~~~~~p~l~~~~~gi~~~~~ 404 (696)
..+..++..-..++..|+.|-++|....+.++.. .+ +++ ...+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~-----------~~~------~~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLA-----------DWY------ALWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-----------HHH------HHCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-----------hHH------HcCcc
Confidence 0001123334568899999999999888776632 22 122 22367
Q ss_pred cEEEecCCCcCCCC----CCCchHHH--H------------Hhhh---hcc------h-hhhcCCccc----cccccCCC
Q 005444 405 KFNIVSPGADMDIY----FPYSEKQK--R------------LTAL---HGS------I-EQLLFDPEQ----NDEHVGTL 452 (696)
Q Consensus 405 k~~VIpnGvD~~~f----~p~~~~~~--r------------~~~~---~~~------~-~~~l~~~~~----~~~~~g~l 452 (696)
|++-|.||||...| .|.....- . +..+ .+. + +.+..++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999998 34321110 0 0000 000 0 112222333 24567877
Q ss_pred CCCCCCEEEEEccccccCChHH-HHHHHHHhhc--cC-----CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHH----
Q 005444 453 SDRSKPIVFSMARLDHVKNMTG-LVECYGKNSQ--LR-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK---- 520 (696)
Q Consensus 453 ~~~~k~iIl~vGRL~~~Kgi~~-Llea~~~l~~--~~-----~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~---- 520 (696)
.+++.+.++++.|+...|+.+. ++..+.++.+ .. ..+.|++.|.+.. .+..-+..++.+..+++
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~ 587 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAP----GYVRAKAIIKLINSIADLVNN 587 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCH----hHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999 8888777653 22 2588988888765 23344445555666665
Q ss_pred HcCCCC--cEEEeccccccCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCCCCcchhhcc--CCe
Q 005444 521 TYKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GAS 594 (696)
Q Consensus 521 ~~~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVvat~~gG~~EiI~d--g~~ 594 (696)
....++ +|.|+. .. +..+.+.+..+||++.+||. +|++|++-+=||..|.++|+|-.|...|+.++ ..|
T Consensus 588 dp~~~~~lKVvFl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~N 662 (796)
T 2c4m_A 588 DPEVSPLLKVVFVE----NY-NVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEEN 662 (796)
T ss_dssp CTTTTTTEEEEEET----TC-CHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGG
T ss_pred ccccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCc
Confidence 224567 788885 22 44666666668999999999 99999999999999999999999999998765 469
Q ss_pred EEEECC--CCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 595 GFHIDP--YHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 595 G~l~~p--~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
||+|.. .++.++-.. .+..+....+| .++++-+++. ...|||..- ..|..+|.
T Consensus 663 gF~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~---~g~fs~~~~-~~y~~Ly~ 717 (796)
T 2c4m_A 663 AYIFGARVEELPALRES-YKPYELYETVP-GLKRALDALD---NGTLNDNNS-GLFYDLKH 717 (796)
T ss_dssp SEEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTT---SSSSCCTTC-CHHHHHHH
T ss_pred EEEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHH---cCCCCCCCH-HHHHHHHH
Confidence 999986 666666554 33333333455 3554444443 256888653 44555554
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.56 E-value=6.4e-14 Score=155.06 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=116.7
Q ss_pred CCEEEEEcccccc-----CChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 005444 457 KPIVFSMARLDHV-----KNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 531 (696)
Q Consensus 457 k~iIl~vGRL~~~-----Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~fl 531 (696)
..++++.|++... |.+..+++++..+ ++++++++++.+ .+.+ + ++.++|++.
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~------------~~~l----~--~~~~~v~~~ 324 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQ------------LEGV----A--NIPDNVRTV 324 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTT------------TSSC----S--SCCSSEEEC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcc------------hhhh----c--cCCCCEEEe
Confidence 4578899998764 8888889888653 578888877644 1111 1 356789999
Q ss_pred ccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--CHHH
Q 005444 532 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQ 605 (696)
Q Consensus 532 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d~e~ 605 (696)
| .++..++ +. ++|++|.. +.+.|+.|||++|+|+|+...++ .++.+.+.+.|+.+++. ++++
T Consensus 325 ~----~~~~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 392 (441)
T 2yjn_A 325 G----FVPMHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQ 392 (441)
T ss_dssp C----SCCHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHH
T ss_pred c----CCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHH
Confidence 8 5555444 55 59999984 44689999999999999997743 56777788899999876 8899
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 606 AAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 606 la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
++++|.+++ .|++.++++++.+.+.. ...+++.+++.++++++
T Consensus 393 l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 393 LRESVKRVL----DDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 999997776 79999999988887665 67899999999888754
No 43
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.54 E-value=1.1e-13 Score=160.24 Aligned_cols=232 Identities=11% Similarity=0.034 Sum_probs=161.0
Q ss_pred hhhHHhhhcCCEEEeccHHHHhhcccc-cccccccccccccccceeecccccCCCcEEEecCCCcCCCC----CCCchHH
Q 005444 351 TADLIAMNNADFIITSTYQEIAGTKNT-VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIY----FPYSEKQ 425 (696)
Q Consensus 351 ~~e~~a~~~AD~IIt~S~~~~~~~k~~-v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnGvD~~~f----~p~~~~~ 425 (696)
..-..++..|+.|-++|....+.++.. ++. ++ ..++.+++-|.||||...| .|.....
T Consensus 429 nMa~lai~~S~~VNgVS~lH~e~ik~~~f~~-----------~~------~~~p~k~~~iTNGI~~rrWl~~~NP~l~~l 491 (824)
T 2gj4_A 429 NMAHLCIAGSHAVNGVARIHSEILKKTIFKD-----------FY------ELEPHKFQNKTNGITPRRWLVLCNPGLAEI 491 (824)
T ss_dssp EHHHHHHHTCSCEEESSHHHHHHHHHTTTHH-----------HH------HHCGGGEEECCCCBCTCCCCCCTCHHHHHH
T ss_pred cHHHHHHHhcCceeeEcHHHHHHHhhHHhHH-----------HH------HcChhhcccccCCcChhhhcccCCHhHHHH
Confidence 334568999999999999888776532 221 12 1236789999999999998 4432211
Q ss_pred H--H-----------Hhh---hh--cch-----hhhcCCccc----cccccCCCCCCCCCEEEEEccccccCChHHH-HH
Q 005444 426 K--R-----------LTA---LH--GSI-----EQLLFDPEQ----NDEHVGTLSDRSKPIVFSMARLDHVKNMTGL-VE 477 (696)
Q Consensus 426 ~--r-----------~~~---~~--~~~-----~~~l~~~~~----~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~L-le 477 (696)
- . +.. +. +.+ +-+..++.. ..++.|+..+++.+.++++.|+...|+.+.+ +.
T Consensus 492 I~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~ 571 (824)
T 2gj4_A 492 IAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLH 571 (824)
T ss_dssp HHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHH
T ss_pred HHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHH
Confidence 0 0 000 00 011 112223333 3455788778999999999999999999997 77
Q ss_pred HHHHhhc--cCC-----CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcC----CCC--cEEEeccccccCChhHHH
Q 005444 478 CYGKNSQ--LRE-----LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYK----LDG--QFRWIAAQTNRARNGELY 544 (696)
Q Consensus 478 a~~~l~~--~~~-----~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~----L~~--~V~flG~~~~~v~~~el~ 544 (696)
.+.++.+ ..| ++.|++.|.+.. .+..-+..++.+..+++.++ +++ +|.|+. .. +..+.
T Consensus 572 ~i~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~----nY-dvslA 642 (824)
T 2gj4_A 572 VITLYNRIKKEPNKFVVPRTVMIGGKAAP----GYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE----NY-RVSLA 642 (824)
T ss_dssp HHHHHHHHHHCTTSCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET----TC-CHHHH
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEEEeCCH----hHHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC----CC-CHHHH
Confidence 7766631 122 478888888765 24445555666777776553 356 788885 22 44666
Q ss_pred HHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCCCCcchhhc--cCCeEEEECCCCHHHHHHHH
Q 005444 545 RYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIE--HGASGFHIDPYHPDQAAELM 610 (696)
Q Consensus 545 ~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVvat~~gG~~EiI~--dg~~G~l~~p~d~e~la~~I 610 (696)
+.+..+||++.+||. +|++|++-+=||..|.++|+|-.|...|+.+ ...|||+|... .+++ ..+
T Consensus 643 ~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l 710 (824)
T 2gj4_A 643 EKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRL 710 (824)
T ss_dssp HHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHH
T ss_pred HHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHH
Confidence 666668999999999 9999999999999999999999998888875 45699999875 6666 444
No 44
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.54 E-value=4e-14 Score=163.45 Aligned_cols=332 Identities=12% Similarity=0.011 Sum_probs=212.1
Q ss_pred CCeEEEEeCCCchHHHH-HHhhc--------------CCCcEEEEecCCCccCC---CCCCc------cHh---hhhhh-
Q 005444 292 FPDFIIGNYSDGNLVAS-LLAYK--------------MGITQCTIAHALEKTKY---PDSDI------YWK---KFDEK- 343 (696)
Q Consensus 292 ~pDvIh~h~~~~~l~a~-lla~~--------------~gip~v~t~H~l~~~~~---~~s~~------~~~---~~~~~- 343 (696)
+||+||+|.++++++.. ++... .+.+.++|.|++.+... +..-+ .+. .+...
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999999977655 33221 36789999999865442 11000 000 00000
Q ss_pred --------------h-----hccchhhhhHHhhhcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCC
Q 005444 344 --------------Y-----HFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDP 404 (696)
Q Consensus 344 --------------y-----~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~ 404 (696)
+ .+..++..-..++..|+.|-++|....+.++...- ++++ ..++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f----------~~~~------~~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLF----------PEYH------QLWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTS----------HHHH------HHCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHh----------hHHH------HhCcc
Confidence 0 00012223456789999999999988876654211 1111 23367
Q ss_pred cEEEecCCCcCCCC----CCCchHHH-------------HHhhhhc---------c-hhhhcCCccc----cccccCCCC
Q 005444 405 KFNIVSPGADMDIY----FPYSEKQK-------------RLTALHG---------S-IEQLLFDPEQ----NDEHVGTLS 453 (696)
Q Consensus 405 k~~VIpnGvD~~~f----~p~~~~~~-------------r~~~~~~---------~-~~~~l~~~~~----~~~~~g~l~ 453 (696)
|++-|.||||...| .|.....- .+..+.+ + .+.+..++.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999998887 34321110 0000000 0 0112222333 245678877
Q ss_pred CCCCCEEEEEccccccCChHH-HHHHHHHhhcc--C-----CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHH----H
Q 005444 454 DRSKPIVFSMARLDHVKNMTG-LVECYGKNSQL--R-----ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMK----T 521 (696)
Q Consensus 454 ~~~k~iIl~vGRL~~~Kgi~~-Llea~~~l~~~--~-----~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~----~ 521 (696)
+++.+.++++.|+...|+.+. ++..+.++.+. . ..+.|++.|.+.. .+..-+..++.+..+++ .
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P----~y~~aK~iIk~i~~va~~in~D 598 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP----GYYLAKNIIFAINKVADVINND 598 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT----TCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh----hHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999 78877766431 1 2488888888765 23344444555666655 2
Q ss_pred cCCCC--cEEEeccccccCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCCCCcchhhcc--CCeE
Q 005444 522 YKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEH--GASG 595 (696)
Q Consensus 522 ~~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVvat~~gG~~EiI~d--g~~G 595 (696)
...++ +|.|+. .. +..+.+.+..+||++.+||. +|++|++-+=||..|.++|+|-.|...|+.++ ..||
T Consensus 599 p~~~~~lKVvfl~----nY-~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 673 (796)
T 1l5w_A 599 PLVGDKLKVVFLP----DY-CVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENI 673 (796)
T ss_dssp TTTGGGEEEEECS----SC-CHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGS
T ss_pred cccCCceEEEEEC----CC-CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcE
Confidence 24566 788885 22 44666666668999999999 99999999999999999999999999998765 4699
Q ss_pred EEECCCCHHHHHHHH---HHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005444 596 FHIDPYHPDQAAELM---ADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGV 654 (696)
Q Consensus 596 ~l~~p~d~e~la~~I---~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~~ 654 (696)
|+|.. +.+++.+.- .+.......+| .++++-+++. ...|||..- ..|..+|..
T Consensus 674 F~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~---~g~fs~~~~-~~y~~Ly~~ 729 (796)
T 1l5w_A 674 FIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELE---SGKYSDGDK-HAFDQMLHS 729 (796)
T ss_dssp EECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHH---HTTTTTTCT-TTTHHHHHH
T ss_pred EEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHH---cCCCCCCcH-HHHHHHHHH
Confidence 99987 777765322 11222233566 4666555554 367999764 667777764
No 45
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.48 E-value=1.5e-13 Score=149.94 Aligned_cols=283 Identities=11% Similarity=0.041 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcCCCcEEEEecCCCccCCCCCCccHhhhhhhhhccchhhhhHHhh
Q 005444 278 TEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAM 357 (696)
Q Consensus 278 ~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~H~l~~~~~~~s~~~~~~~~~~y~~~~~~~~e~~a~ 357 (696)
...+.+.+.+. +||+|+++.......+++.|++.|+|+++...++ .+ + +..+ .+. ......-
T Consensus 83 ~~~l~~~l~~~---kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-rs-~---~~~~--pee--------~nR~~~~ 144 (385)
T 4hwg_A 83 IEKVDEVLEKE---KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-RC-F---DQRV--PEE--------INRKIID 144 (385)
T ss_dssp HHHHHHHHHHH---CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-CC-S---CTTS--THH--------HHHHHHH
T ss_pred HHHHHHHHHhc---CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-cc-c---cccC--cHH--------HHHHHHH
Confidence 33444444444 9999999876543334788899999976544333 11 0 1000 000 0011233
Q ss_pred hcCCEEEeccHHHHhhcccccccccccccccccccceeecccccCCCcEEEecCC-CcCCCCCCCchHHHHHhhhhcchh
Q 005444 358 NNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMDIYFPYSEKQKRLTALHGSIE 436 (696)
Q Consensus 358 ~~AD~IIt~S~~~~~~~k~~v~qy~~~~~~~~p~l~~~~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~~~ 436 (696)
..+|.++++|+...+... ..|++ +.++.++.|. +|.-.+.. ...
T Consensus 145 ~~a~~~~~~te~~~~~l~--------------------~~G~~--~~~I~vtGnp~~D~~~~~~--~~~----------- 189 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLI--------------------AEGLP--AELTFKSGSHMPEVLDRFM--PKI----------- 189 (385)
T ss_dssp HHCSEEEESSHHHHHHHH--------------------HTTCC--GGGEEECCCSHHHHHHHHH--HHH-----------
T ss_pred hhhceeecCCHHHHHHHH--------------------HcCCC--cCcEEEECCchHHHHHHhh--hhc-----------
Confidence 568999999987654211 12333 6688888873 34321100 000
Q ss_pred hhcCCccccccccCCCCCCCCCEEEEEcccc---ccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHH
Q 005444 437 QLLFDPEQNDEHVGTLSDRSKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIE 513 (696)
Q Consensus 437 ~~l~~~~~~~~~~g~l~~~~k~iIl~vGRL~---~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~ 513 (696)
+..+.++.+|+ ++++.++++.+|.. ..|++..+++|+.++.+.+ ++.+++..+ +.
T Consensus 190 ----~~~~~~~~lgl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~-p~-------------- 247 (385)
T 4hwg_A 190 ----LKSDILDKLSL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTH-PR-------------- 247 (385)
T ss_dssp ----HHCCHHHHTTC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEEC-HH--------------
T ss_pred ----chhHHHHHcCC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECC-hH--------------
Confidence 01123345676 44455666777743 4478999999999987544 677777543 21
Q ss_pred HHHHHHHHc-C-C--CCcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCC-Ccchh
Q 005444 514 KMHELMKTY-K-L--DGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG-GPAEI 588 (696)
Q Consensus 514 ~l~~li~~~-~-L--~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~g-G~~Ei 588 (696)
+.+.++++ + + .++|.+++ .+...++..+++. ||++|.+| |....||+++|+|+|+.... +..|.
T Consensus 248 -~~~~l~~~~~~~~~~~~v~l~~----~lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~ 316 (385)
T 4hwg_A 248 -TKKRLEDLEGFKELGDKIRFLP----AFSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHERPEG 316 (385)
T ss_dssp -HHHHHHTSGGGGGTGGGEEECC----CCCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHH
T ss_pred -HHHHHHHHHHHhcCCCCEEEEc----CCCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhh
Confidence 33444444 3 2 46799987 5666788889995 99999877 45679999999999998554 35787
Q ss_pred hccCCeEEEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005444 589 IEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLA 652 (696)
Q Consensus 589 I~dg~~G~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly 652 (696)
+..| ++.++.+ |++++++++.+++ +|+..++.|++++..++....+-+++++.+.+++
T Consensus 317 v~~G-~~~lv~~-d~~~i~~ai~~ll----~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 317 MDAG-TLIMSGF-KAERVLQAVKTIT----EEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HHHT-CCEECCS-SHHHHHHHHHHHH----TTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhcC-ceEEcCC-CHHHHHHHHHHHH----hChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 7666 7777754 8999999997766 7887776665544433012334455555555543
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.47 E-value=2e-12 Score=141.57 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=109.3
Q ss_pred CCCCEEEEEcccc-ccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLD-HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~-~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
..++++++.|++. ..+.+..+++++..+ +++++++++..+. +..++.++|.+.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~-------------------~~~~~~~~v~~~~- 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL-------------------GRIDEGDDCLVVG- 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC-------------------CCSSCCTTEEEES-
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc-------------------ccccCCCCEEEec-
Confidence 3467888999998 666677777777654 4667777665430 0123467899998
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCc----chhhccCCeEEEECCC--CHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGP----AEIIEHGASGFHIDPY--HPDQAA 607 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~----~EiI~dg~~G~l~~p~--d~e~la 607 (696)
.++..++ +. .+|++|..+ -..|+.||+++|+|+|+...++- .+.+++.+.|..+++. +.++++
T Consensus 275 ---~~~~~~l---l~-~~d~~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 343 (404)
T 3h4t_A 275 ---EVNHQVL---FG-RVAAVVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLS 343 (404)
T ss_dssp ---SCCHHHH---GG-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---CCCHHHH---Hh-hCcEEEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHH
Confidence 5555444 45 599999753 23789999999999999866543 3445666789988754 688899
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 608 ELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 608 ~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
++|.+++ . |++++++.+.+.... . -.++..++.++++++
T Consensus 344 ~ai~~ll----~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 344 AALATAL----T-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HHHHHHT----S-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHHH
T ss_pred HHHHHHh----C-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHh
Confidence 9987665 6 888887777665443 3 467777777776654
No 47
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.46 E-value=1.6e-11 Score=134.84 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=110.5
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEE-EEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV-VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~Lv-IvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+++.++++.|++. .+....+.+++..+.+ .+++++ ++|.+.+ .+.+ + .++++|++.|
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~------------~~~~----~--~~~~~v~~~~- 311 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVD------------PADL----G--EVPPNVEVHQ- 311 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSC------------GGGG----C--SCCTTEEEES-
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCC------------hHHh----c--cCCCCeEEec-
Confidence 3456788899987 3444444444444433 457775 4566543 1111 1 2567899998
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--CHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 607 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d~e~la 607 (696)
.++.. .+++ .+|+||.. +-++|++|||++|+|+|+....+ .++.+.+.+.|+.+++. ++++++
T Consensus 312 ---~~~~~---~~l~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 380 (424)
T 2iya_A 312 ---WVPQL---DILT-KASAFITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR 380 (424)
T ss_dssp ---SCCHH---HHHT-TCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHH
T ss_pred ---CCCHH---HHHh-hCCEEEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHH
Confidence 44433 4677 49999974 33479999999999999997643 45666677889998765 889999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005444 608 ELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG 653 (696)
Q Consensus 608 ~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~ 653 (696)
++|.+++ .|++.++++++.+.+.. +....+..++.++++.+
T Consensus 381 ~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 381 EAVLAVA----SDPGVAERLAAVRQEIR-EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 9997776 79998888877776543 45667777777777653
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.33 E-value=2.4e-11 Score=133.19 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=103.4
Q ss_pred CCCEEEEEccc-cccCChHHHHHHHHHhhccCCCeEEEEE-eCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 456 SKPIVFSMARL-DHVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 456 ~k~iIl~vGRL-~~~Kgi~~Llea~~~l~~~~~~~~LvIv-G~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
...++++.|++ ...+.+..+++++..+. .+++++ |.+.. + ...+.++|.+.|
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~-------------~-------~~~~~~~v~~~~- 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADL-------------V-------LPDDGADCFAIG- 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTC-------------C-------CSSCGGGEEECS-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCcc-------------c-------ccCCCCCEEEeC-
Confidence 45688899999 57888888888887652 456555 54432 0 013456899998
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECCC--CHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDPY--HPDQAA 607 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p~--d~e~la 607 (696)
.++..++ +. ++|+||.. +-.+|++|||++|+|+|+....+ .++.+++.+.|+.+++. +.++++
T Consensus 292 ---~~~~~~~---l~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~ 360 (415)
T 1iir_A 292 ---EVNHQVL---FG-RVAAVIHH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLS 360 (415)
T ss_dssp ---SCCHHHH---GG-GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHH
T ss_pred ---cCChHHH---Hh-hCCEEEeC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHH
Confidence 5555554 45 69999985 33479999999999999986655 56667777899998764 778888
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005444 608 ELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 651 (696)
Q Consensus 608 ~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~l 651 (696)
++| .++ .|++.++++.+.+.+.. ..-..+.+++.++++
T Consensus 361 ~~i----~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 361 AAL----ATA-LTPETHARATAVAGTIR-TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHH----HHH-TSHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHH
T ss_pred HHH----HHH-cCHHHHHHHHHHHHHHh-hcChHHHHHHHHHHH
Confidence 888 556 68888877766655432 223344444444444
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.32 E-value=1.1e-11 Score=134.24 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=104.8
Q ss_pred CCCCEEEEEccccccCC-hHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 455 RSKPIVFSMARLDHVKN-MTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kg-i~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
+...++++.|++...++ ...+.+++..+.+ .+..+++++++.+.. ....++++|.+.+
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~------------------~~~~~~~~v~~~~- 294 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLA------------------LLGELPANVRVVE- 294 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCC------------------CCCCCCTTEEEEC-
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccc------------------ccccCCCCEEEEe-
Confidence 34456778888876543 4555556665554 346677766554411 1124678899988
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCC----CcchhhccCCeEEEECCCCHHHHHHH
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPYHPDQAAEL 609 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~g----G~~EiI~dg~~G~l~~p~d~e~la~~ 609 (696)
.++..++ +. .+|+||.- +..+++.|||++|+|+|+.... ..++.+++.+.|+.+++. +..+++
T Consensus 295 ---~~p~~~l---L~-~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~--~~~~~a 361 (400)
T 4amg_A 295 ---WIPLGAL---LE-TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG--SLGAEQ 361 (400)
T ss_dssp ---CCCHHHH---HT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT--TCSHHH
T ss_pred ---ecCHHHH---hh-hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC--CchHHH
Confidence 5665554 55 59999863 4567999999999999996444 356677777789888754 446778
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005444 610 MADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTL 651 (696)
Q Consensus 610 I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~l 651 (696)
|.+++ +||+++++..+-+.+ +...=+....++.++++
T Consensus 362 l~~lL----~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 362 CRRLL----DDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHH----HCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHHHH----cCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 87666 799988776655544 33555777888877776
No 50
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.30 E-value=4.4e-11 Score=135.75 Aligned_cols=186 Identities=9% Similarity=-0.022 Sum_probs=130.4
Q ss_pred cCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEE--EEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCC
Q 005444 449 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLV--VVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG 526 (696)
Q Consensus 449 ~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~Lv--IvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~ 526 (696)
+|++.+++.+++++.+++ .|..+.+++++.++.+..|+..|+ ++|++... ...+.+.+.+.|+.+
T Consensus 433 ~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~-----------~~~~~~~~~~~GI~~ 499 (631)
T 3q3e_A 433 YLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI-----------THPYVERFIKSYLGD 499 (631)
T ss_dssp CCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG-----------GHHHHHHHHHHHHGG
T ss_pred ccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh-----------hHHHHHHHHHcCCCc
Confidence 555322346677777775 688999999999998888887764 35643220 112223345667878
Q ss_pred cEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhc------cCCeEE-EEC
Q 005444 527 QFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIE------HGASGF-HID 599 (696)
Q Consensus 527 ~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~------dg~~G~-l~~ 599 (696)
+|.|.| ..+..+....++. +|+|+-|+.+.+ |+|.+|||+||+|||+...++...-+. -|..++ +.+
T Consensus 500 Rv~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~ 573 (631)
T 3q3e_A 500 SATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN 573 (631)
T ss_dssp GEEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES
T ss_pred cEEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC
Confidence 999999 7778888888885 999999998765 999999999999999977666665552 244443 333
Q ss_pred CCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HhhhhH
Q 005444 600 PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAG-VYGFWK 659 (696)
Q Consensus 600 p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~a~~l~~ly~-~y~~~~ 659 (696)
|.++++++...+. .|++.+++++++.++......-|+..++++.++|+ .|.-|+
T Consensus 574 --d~eeYv~~Av~La----~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~ 628 (631)
T 3q3e_A 574 --TVDEYVERAVRLA----ENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFL 628 (631)
T ss_dssp --SHHHHHHHHHHHH----HCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHH
Confidence 7899988886655 89999999999998875442222244555555553 344454
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.29 E-value=7.8e-11 Score=129.10 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=95.6
Q ss_pred CCCEEEEEcccc---ccCChHHHHHHHHHhhccCCCeEEEEE-eCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEe
Q 005444 456 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVV-AGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWI 531 (696)
Q Consensus 456 ~k~iIl~vGRL~---~~Kgi~~Llea~~~l~~~~~~~~LvIv-G~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~fl 531 (696)
+..++++.|++. ..+.+..+++++..+ +++++++ |.+.. + . ..++++|.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-------------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTEL-------------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTC-------------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCccc-------------c-c------cCCCCCEEEe
Confidence 356788899985 466777778887764 3556665 54422 0 0 1356789999
Q ss_pred ccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccCCeEEEECC--CCHHH
Q 005444 532 AAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHGASGFHIDP--YHPDQ 605 (696)
Q Consensus 532 G~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg~~G~l~~p--~d~e~ 605 (696)
+ .++..++ +. ++|+||.- +-..|+.||+++|+|+|+....+ .++.+++.+.|+.++. .+.++
T Consensus 292 ~----~~~~~~l---l~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 359 (416)
T 1rrv_A 292 D----EVNFQAL---FR-RVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFES 359 (416)
T ss_dssp S----SCCHHHH---GG-GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHH
T ss_pred c----cCChHHH---hc-cCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHH
Confidence 8 5555554 45 69999984 33569999999999999976543 5566777788998875 36788
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 005444 606 AAELMADFFGKCKENPSHWKKISDGGLK 633 (696)
Q Consensus 606 la~~I~~~l~~l~~dp~~~~~m~~~a~~ 633 (696)
++++| .++ .|++.++++++.+.+
T Consensus 360 l~~~i----~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 360 LSAAL----TTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHHHH----HHH-TSHHHHHHHHHHTTT
T ss_pred HHHHH----HHh-hCHHHHHHHHHHHHH
Confidence 88887 556 788888777665543
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.05 E-value=6.1e-10 Score=106.48 Aligned_cols=133 Identities=11% Similarity=0.098 Sum_probs=99.3
Q ss_pred CCCEEEEEcccc---ccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEec
Q 005444 456 SKPIVFSMARLD---HVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIA 532 (696)
Q Consensus 456 ~k~iIl~vGRL~---~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG 532 (696)
...+++++|++. ..|++..+++++.++ +.++++++++... + .+.++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~------------~---------~~~~~v~~~~ 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP------------D---------TLGLNTRLYK 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC------------T---------TCCTTEEEES
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc------------c---------cCCCcEEEec
Confidence 456888999996 567777777777543 3678888876541 0 3467899999
Q ss_pred cccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCC----CcchhhccCCeEEEECCC--CHHHH
Q 005444 533 AQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHG----GPAEIIEHGASGFHIDPY--HPDQA 606 (696)
Q Consensus 533 ~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~g----G~~EiI~dg~~G~l~~p~--d~e~l 606 (696)
+++..++..+ + ++|++|.. +.+.|++|||++|+|+|+.... +.++.+.+.+.|+.+++. +++++
T Consensus 75 ----~~~~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l 144 (170)
T 2o6l_A 75 ----WIPQNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDL 144 (170)
T ss_dssp ----SCCHHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHH
T ss_pred ----CCCHHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHH
Confidence 5555555532 5 59999985 4468999999999999999764 456777888899999877 88999
Q ss_pred HHHHHHHHHhhhcCHHHHHHHH
Q 005444 607 AELMADFFGKCKENPSHWKKIS 628 (696)
Q Consensus 607 a~~I~~~l~~l~~dp~~~~~m~ 628 (696)
+++|.+++ .|++.++++.
T Consensus 145 ~~~i~~ll----~~~~~~~~a~ 162 (170)
T 2o6l_A 145 LNALKRVI----NDPSYKENVM 162 (170)
T ss_dssp HHHHHHHH----HCHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHH
Confidence 99997776 7887554443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.04 E-value=0.00011 Score=86.23 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=133.6
Q ss_pred cccccCCCCCCCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCC
Q 005444 445 NDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL 524 (696)
Q Consensus 445 ~~~~~g~l~~~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L 524 (696)
.|..+|+ +++.+++++..++.+ =-...++.+.++.+.-|+.+|++...... ..+.+.+.+++.|+
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~~K--i~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-----------~~~~l~~~~~~~gi 577 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQLYK--IDPSTLQMWANILKRVPNSVLWLLRFPAV-----------GEPNIQQYAQNMGL 577 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCGGG--CCHHHHHHHHHHHHHCSSEEEEEEETTGG-----------GHHHHHHHHHHTTC
T ss_pred chhhcCC--CCCCEEEEeCCcccc--CCHHHHHHHHHHHHhCCCCeEEEEeCcHH-----------HHHHHHHHHHhcCC
Confidence 3556787 667777777766654 44567777777777779999999876543 13567888888888
Q ss_pred C-CcEEEeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCCcchhhc-----c-CCeEEE
Q 005444 525 D-GQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIE-----H-GASGFH 597 (696)
Q Consensus 525 ~-~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG~~EiI~-----d-g~~G~l 597 (696)
. ++|.|.+ +.+..+....+.. +||++=|--|-| |.|..||+.+|+|||+-....+..-+. . |-.-++
T Consensus 578 ~~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~~g-~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i 651 (723)
T 4gyw_A 578 PQNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLCNG-HTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI 651 (723)
T ss_dssp CGGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSSCC-SHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB
T ss_pred CcCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCcCC-HHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc
Confidence 4 7899998 6677888888885 999998866644 899999999999999865333322211 0 111222
Q ss_pred ECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 005444 598 IDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYE--RYTWKIYSERLMTLAGV 654 (696)
Q Consensus 598 ~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~--~ysw~~~a~~l~~ly~~ 654 (696)
. .|.++..+.-..+. .|++.+..+.++-++.... -|+-+.+++.+++.|+.
T Consensus 652 a--~~~~~Y~~~a~~la----~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~ 704 (723)
T 4gyw_A 652 A--KNRQEYEDIAVKLG----TDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQ 704 (723)
T ss_dssp C--SSHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHH
Confidence 2 37888887775554 8999999999888877655 38999999999999875
No 54
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.99 E-value=0.00018 Score=83.58 Aligned_cols=142 Identities=11% Similarity=-0.000 Sum_probs=102.3
Q ss_pred CCCCC-----CCCCEEEEEccccccCChHH-HHHHHH---Hhhcc-------------CCCeEEEEEeCccCCCCCcchH
Q 005444 450 GTLSD-----RSKPIVFSMARLDHVKNMTG-LVECYG---KNSQL-------------RELVNLVVVAGYIDVNKSKDRE 507 (696)
Q Consensus 450 g~l~~-----~~k~iIl~vGRL~~~Kgi~~-Llea~~---~l~~~-------------~~~~~LvIvG~g~~~~~~~d~e 507 (696)
|+..+ ++...++++-|+...|.... ++..+. +++.. .....+++.|.... .|..
T Consensus 588 g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP----~y~~ 663 (879)
T 1ygp_A 588 GVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAP----GYYM 663 (879)
T ss_dssp TCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCT----TCHH
T ss_pred CcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCC----CcHH
Confidence 66557 78899999999999999988 555543 32222 12366666665443 2344
Q ss_pred HHHHHHHHHHHHH----HcCCCC--cEEEeccccccCChhHHHHHHHccccEEEeCCC--CCCCcHHHHHHHHcCCcEEE
Q 005444 508 EIAEIEKMHELMK----TYKLDG--QFRWIAAQTNRARNGELYRYIADTKGAFVQPAF--YEAFGLTVVEAMTCGLPTFA 579 (696)
Q Consensus 508 ~~~~~~~l~~li~----~~~L~~--~V~flG~~~~~v~~~el~~~la~aadvfV~PS~--~E~fGltvlEAMa~GlPVva 579 (696)
-+..++.+..+++ ...+.+ +|.|+. .. +-.+.+.+-.++|+-.+-|. .|+.|.+=+=+|.-|.++++
T Consensus 664 aK~iIklI~~va~~iN~Dp~v~~~LKVVFle----nY-~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 664 AKLIIKLINCVADIVNNDESIEHLLKVVFVA----DY-NVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTTSEEEEEET----TC-CHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHhccChhhCCceEEEEeC----CC-CHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 4455555555554 223556 788986 23 33566666668999999876 79999999999999999999
Q ss_pred cCCCCcchhhcc--CCeEEEECC
Q 005444 580 TCHGGPAEIIEH--GASGFHIDP 600 (696)
Q Consensus 580 t~~gG~~EiI~d--g~~G~l~~p 600 (696)
|-.|...|+.++ ..|+|+|-.
T Consensus 739 tlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 739 TVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp ESCTHHHHHHHHHCGGGSEEESC
T ss_pred cccchhHHHHHHcCcccEEEccC
Confidence 999999999866 458998854
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.96 E-value=0.0038 Score=69.52 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred HHHHcccc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhh-ccCCeEEEECCC-----CHHHHHHHHHH
Q 005444 545 RYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEII-EHGASGFHIDPY-----HPDQAAELMAD 612 (696)
Q Consensus 545 ~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI-~dg~~G~l~~p~-----d~e~la~~I~~ 612 (696)
.++++ ++ +||.= +--++++||+++|+|+|+-...+ .+..+ +.-+.|..++.. +.++++++|.+
T Consensus 351 ~vL~h-~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~ 425 (480)
T 2vch_A 351 QVLAH-PSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKG 425 (480)
T ss_dssp HHHHS-TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHH
T ss_pred HHhCC-CCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHH
Confidence 45553 66 56642 33468999999999999975433 44554 566788887653 68889999987
Q ss_pred HH
Q 005444 613 FF 614 (696)
Q Consensus 613 ~l 614 (696)
++
T Consensus 426 vl 427 (480)
T 2vch_A 426 LM 427 (480)
T ss_dssp HH
T ss_pred Hh
Confidence 77
No 56
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.96 E-value=0.00074 Score=74.81 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCcEEEeccccccCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccC-CeEEEE
Q 005444 525 DGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHG-ASGFHI 598 (696)
Q Consensus 525 ~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg-~~G~l~ 598 (696)
.+++...+ .++.. .++++ ++|+||.= +-.++++||+++|+|+|+-...+ .+..+.+. +.|..+
T Consensus 324 ~~~~~v~~----w~pq~---~vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l 392 (456)
T 2c1x_A 324 RGYGMVVP----WAPQA---EVLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392 (456)
T ss_dssp TTTEEEES----CCCHH---HHHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEEC
T ss_pred CCceEEec----CCCHH---HHhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEe
Confidence 35688877 45543 45663 36788862 44579999999999999975432 45556666 788888
Q ss_pred CCC--CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 005444 599 DPY--HPDQAAELMADFFGKCKENPSHWKKISDGGLKR 634 (696)
Q Consensus 599 ~p~--d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~ 634 (696)
+.. +.++++++|.+++ .|++ .+++.+++++.
T Consensus 393 ~~~~~~~~~l~~~i~~ll----~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 393 EGGVFTKSGLMSCFDQIL----SQEK-GKKLRENLRAL 425 (456)
T ss_dssp GGGSCCHHHHHHHHHHHH----HSHH-HHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH----CCCc-HHHHHHHHHHH
Confidence 643 6788888887776 6775 55666666544
No 57
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.93 E-value=0.005 Score=68.54 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=85.1
Q ss_pred CCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecccc
Q 005444 456 SKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 535 (696)
Q Consensus 456 ~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~ 535 (696)
...++++.|.+.. .....+.+++..+.+ .+.+++++-+....... .+. .-+.+ .++. .+++...+
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~--~~~--l~~~~---~~~~--~~~~~v~~--- 359 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLAN--CKKSFLWIIRPDLVIGG--SVI--FSSEF---TNEI--ADRGLIAS--- 359 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHH--TTCEEEEECCGGGSTTT--GGG--SCHHH---HHHH--TTTEEEES---
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHh--cCCcEEEEEcCCccccc--ccc--CcHhH---HHhc--CCCEEEEe---
Confidence 3456677787653 233444444444433 24666665443210000 000 00111 1222 45788887
Q ss_pred ccCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhc-cCCeEEEECC-CCHHHHHH
Q 005444 536 NRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIE-HGASGFHIDP-YHPDQAAE 608 (696)
Q Consensus 536 ~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~-dg~~G~l~~p-~d~e~la~ 608 (696)
+++..+ ++++ ++++||. =+-.+++.||+++|+|+|+-...+ .+..+. +-+.|..++. -+.+++++
T Consensus 360 -~~pq~~---~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~ 431 (482)
T 2pq6_A 360 -WCPQDK---VLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAK 431 (482)
T ss_dssp -CCCHHH---HHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHH
T ss_pred -ecCHHH---HhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHH
Confidence 555443 5543 2344775 244578999999999999975543 344443 5678888862 27888888
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHH
Q 005444 609 LMADFFGKCKENPSHWKKISDGGLKR 634 (696)
Q Consensus 609 ~I~~~l~~l~~dp~~~~~m~~~a~~~ 634 (696)
+|.+++ .|++ .+++.+++++.
T Consensus 432 ~i~~ll----~~~~-~~~~r~~a~~l 452 (482)
T 2pq6_A 432 LINEVI----AGDK-GKKMKQKAMEL 452 (482)
T ss_dssp HHHHHH----TSHH-HHHHHHHHHHH
T ss_pred HHHHHH----cCCc-HHHHHHHHHHH
Confidence 887776 7886 35666666544
No 58
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.75 E-value=0.0087 Score=66.27 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=76.6
Q ss_pred CCCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc
Q 005444 455 RSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ 534 (696)
Q Consensus 455 ~~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~ 534 (696)
++..++++.|.+...-+.+.+.+++..+.+. +.+++++-+... +.. .+ .+.+.... .+++...+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~--~~l-~~------~~~~~~~~---~~~~~v~~-- 338 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEK--KVF-PE------GFLEWMEL---EGKGMICG-- 338 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCG--GGS-CT------THHHHHHH---HCSEEEES--
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCc--ccC-Ch------hHHHhhcc---CCCEEEEc--
Confidence 3445677788877323434444444444332 356666554310 000 00 11111110 24577776
Q ss_pred cccCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchh-hccCCeEEEE-C---C----
Q 005444 535 TNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEI-IEHGASGFHI-D---P---- 600 (696)
Q Consensus 535 ~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~Ei-I~dg~~G~l~-~---p---- 600 (696)
.++..+ ++++ ++|+||.= +-.++++||+++|+|+|+-...+ .+.. ++.-+.|+.+ + .
T Consensus 339 --w~pq~~---vL~h~~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~ 409 (463)
T 2acv_A 339 --WAPQVE---VLAHKAIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409 (463)
T ss_dssp --SCCHHH---HHHSTTEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCC
T ss_pred --cCCHHH---HhCCCccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCcc
Confidence 444433 4542 47788863 44579999999999999975433 3445 4667789988 2 2
Q ss_pred CCHHHHHHHHHHHH
Q 005444 601 YHPDQAAELMADFF 614 (696)
Q Consensus 601 ~d~e~la~~I~~~l 614 (696)
-+.++++++|.+++
T Consensus 410 ~~~~~l~~ai~~ll 423 (463)
T 2acv_A 410 VAAEEIEKGLKDLM 423 (463)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH
Confidence 36888889887766
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.66 E-value=0.0027 Score=70.25 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=83.5
Q ss_pred CCCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHH-HHHHHHcCCCCcEEEeccc
Q 005444 456 SKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKM-HELMKTYKLDGQFRWIAAQ 534 (696)
Q Consensus 456 ~k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l-~~li~~~~L~~~V~flG~~ 534 (696)
+..+.++.|.+... ..+.+.+.+..+... +.+++++-+... .+.+ ....++ ..+++...+
T Consensus 273 ~~vVyvsfGS~~~~-~~~~~~el~~~l~~~--~~~flw~~~~~~------------~~~lp~~~~~~--~~~~~~vv~-- 333 (454)
T 3hbf_A 273 SSVVYISFGSVVTP-PPHELTALAESLEEC--GFPFIWSFRGDP------------KEKLPKGFLER--TKTKGKIVA-- 333 (454)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHH--CCCEEEECCSCH------------HHHSCTTHHHH--TTTTEEEES--
T ss_pred CceEEEecCCCCcC-CHHHHHHHHHHHHhC--CCeEEEEeCCcc------------hhcCCHhHHhh--cCCceEEEe--
Confidence 34456777877642 234444444444332 355655543321 0111 011122 246788887
Q ss_pred cccCChhHHHHHHHcccc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC----cchhhccC-CeEEEECC--CCHHH
Q 005444 535 TNRARNGELYRYIADTKG--AFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG----PAEIIEHG-ASGFHIDP--YHPDQ 605 (696)
Q Consensus 535 ~~~v~~~el~~~la~aad--vfV~PS~~E~fGltvlEAMa~GlPVvat~~gG----~~EiI~dg-~~G~l~~p--~d~e~ 605 (696)
.++..+ +++ .++ +||.= +--.+++||+++|+|.|+-...+ .+..+++. +.|..++. -+.++
T Consensus 334 --w~Pq~~---vL~-h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~ 403 (454)
T 3hbf_A 334 --WAPQVE---ILK-HSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKES 403 (454)
T ss_dssp --SCCHHH---HHH-STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHH
T ss_pred --eCCHHH---HHh-hcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHH
Confidence 555544 455 377 56642 33468999999999999975433 44555664 78988865 36888
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 005444 606 AAELMADFFGKCKENPSHWKKISDGGLKR 634 (696)
Q Consensus 606 la~~I~~~l~~l~~dp~~~~~m~~~a~~~ 634 (696)
++++|.+++ .|+ ..++|.+++++.
T Consensus 404 l~~av~~ll----~~~-~~~~~r~~a~~l 427 (454)
T 3hbf_A 404 IKKALELTM----SSE-KGGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHHH----SSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCC-hHHHHHHHHHHH
Confidence 999997776 664 234555555443
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.51 E-value=0.0039 Score=65.70 Aligned_cols=101 Identities=18% Similarity=0.062 Sum_probs=66.9
Q ss_pred CCCEEEEEcc-ccccCChH--HHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCC---CCcEE
Q 005444 456 SKPIVFSMAR-LDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKL---DGQFR 529 (696)
Q Consensus 456 ~k~iIl~vGR-L~~~Kgi~--~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L---~~~V~ 529 (696)
++.+++..|. ..+.|... .+.+++..+.+. +++++++|+..+ .+...++.+..+- ...+.
T Consensus 180 ~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e------------~~~~~~i~~~~~~~~~~~~~~ 245 (348)
T 1psw_A 180 RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD------------HEAGNEILAALNTEQQAWCRN 245 (348)
T ss_dssp SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG------------HHHHHHHHTTSCHHHHTTEEE
T ss_pred CcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh------------HHHHHHHHHhhhhccccceEe
Confidence 3445666776 55666665 788888877654 689999886644 2233334333220 12346
Q ss_pred EeccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 005444 530 WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 580 (696)
Q Consensus 530 flG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat 580 (696)
+.| ..+..++..+++. +|++|... .|..-+ |.++|+|+|+-
T Consensus 246 l~g----~~sl~e~~ali~~-a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 246 LAG----ETQLDQAVILIAA-CKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp CTT----TSCHHHHHHHHHT-SSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred ccC----cCCHHHHHHHHHh-CCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 667 6778899999995 99999873 244333 99999999985
No 61
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.13 E-value=0.01 Score=61.39 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=61.4
Q ss_pred CCEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccc
Q 005444 457 KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTN 536 (696)
Q Consensus 457 k~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~ 536 (696)
+.+++++|..+...-...+++++. +. .. -.+|+|.+.. ..+++++.+++. +++.+.++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~---~~-~~-i~vv~G~~~~-----------~~~~l~~~~~~~---~~v~v~~~~~- 217 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELP---KT-KI-ISIATSSSNP-----------NLKKLQKFAKLH---NNIRLFIDHE- 217 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSC---TT-SC-EEEEECTTCT-----------THHHHHHHHHTC---SSEEEEESCS-
T ss_pred CeEEEEECCCchhhHHHHHHHHhh---cC-CC-EEEEECCCch-----------HHHHHHHHHhhC---CCEEEEeCHH-
Confidence 456778888775432333444443 22 22 3455666643 145566655543 3799988544
Q ss_pred cCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 005444 537 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATC 581 (696)
Q Consensus 537 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~ 581 (696)
++..+|+. ||+.|.+ -|.|+.|++++|+|.|.-.
T Consensus 218 -----~m~~~m~~-aDlvI~~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 218 -----NIAKLMNE-SNKLIIS-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp -----CHHHHHHT-EEEEEEE-----SSHHHHHHHHTTCCEEEEC
T ss_pred -----HHHHHHHH-CCEEEEC-----CcHHHHHHHHcCCCEEEEe
Confidence 48888884 9999984 2689999999999999864
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=93.79 E-value=0.21 Score=52.89 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCCCCE-EEEEccccccCCh--HHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE
Q 005444 454 DRSKPI-VFSMARLDHVKNM--TGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW 530 (696)
Q Consensus 454 ~~~k~i-Il~vGRL~~~Kgi--~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~f 530 (696)
++++++ ++..|.=.+.|.. +.+.+.+..+.+. +.+++++|+..+ .+..+++++..+ ...+.+
T Consensus 182 ~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e------------~~~~~~i~~~~~-~~~~~l 246 (349)
T 3tov_A 182 TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD------------LEMVQPVVEQME-TKPIVA 246 (349)
T ss_dssp CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT------------HHHHHHHHHTCS-SCCEEC
T ss_pred CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch------------HHHHHHHHHhcc-cccEEe
Confidence 334444 4556654455655 4677777777654 578888886544 334455555544 234666
Q ss_pred eccccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 005444 531 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 580 (696)
Q Consensus 531 lG~~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat 580 (696)
.| ..+..|+..+++. +|++|.. + .|..-+ |.++|+|+|+-
T Consensus 247 ~g----~~sl~e~~ali~~-a~~~i~~---D-sG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 247 TG----KFQLGPLAAAMNR-CNLLITN---D-SGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp TT----CCCHHHHHHHHHT-CSEEEEE---S-SHHHHH-HHTTTCCEEEE
T ss_pred eC----CCCHHHHHHHHHh-CCEEEEC---C-CCHHHH-HHhcCCCEEEE
Confidence 77 6778899999995 9999986 2 355555 99999999996
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=91.09 E-value=0.18 Score=50.21 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=44.1
Q ss_pred hHHHHHHH-ccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCCCC---c-----chhhccCCeEEEECCCCHHHHHHHHH
Q 005444 541 GELYRYIA-DTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGG---P-----AEIIEHGASGFHIDPYHPDQAAELMA 611 (696)
Q Consensus 541 ~el~~~la-~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~gG---~-----~EiI~dg~~G~l~~p~d~e~la~~I~ 611 (696)
.++..+|+ . ||++|.= +-..|+.|++++|+|.|.-.... . ++.+.+.+.++.+ +++.++++|.
T Consensus 123 ~~m~~~l~~~-AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~~~~L~~~i~ 194 (224)
T 2jzc_A 123 TKMQSIIRDY-SDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---APTETGLIAG 194 (224)
T ss_dssp SSHHHHHHHH-CSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---CSCTTTHHHH
T ss_pred chHHHHHHhc-CCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---CHHHHHHHHH
Confidence 35778888 7 9999973 45679999999999999975532 1 3344444456666 3455666665
Q ss_pred HH
Q 005444 612 DF 613 (696)
Q Consensus 612 ~~ 613 (696)
++
T Consensus 195 ~l 196 (224)
T 2jzc_A 195 LR 196 (224)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=90.61 E-value=0.69 Score=47.90 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCEEEEEccccccCChH--HHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEecc
Q 005444 456 SKPIVFSMARLDHVKNMT--GLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAA 533 (696)
Q Consensus 456 ~k~iIl~vGRL~~~Kgi~--~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~ 533 (696)
++.+++..|.=.+.|... .+.+.+..+.+ .+++++++++++. +.+...++.+.. + ++.+.|
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~~g~~~-----------e~~~~~~i~~~~--~-~~~l~g- 240 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLAD--SGIRIKLPWGAPH-----------EEERAKRLAEGF--A-YVEVLP- 240 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTT--TCCEEEECCSSHH-----------HHHHHHHHHTTC--T-TEEECC-
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHH--CCCcEEEecCCHH-----------HHHHHHHHHhhC--C-cccccC-
Confidence 344556666545556655 67777777754 3688888754433 123334444332 2 466777
Q ss_pred ccccCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 005444 534 QTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 580 (696)
Q Consensus 534 ~~~~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat 580 (696)
..+..|+..+++. ||++|.. ++ |..=+ |.+.|+|+|+-
T Consensus 241 ---~~sl~el~ali~~-a~l~I~~---DS-G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 ---KMSLEGVARVLAG-AKFVVSV---DT-GLSHL-TAALDRPNITV 278 (326)
T ss_dssp ---CCCHHHHHHHHHT-CSEEEEE---SS-HHHHH-HHHTTCCEEEE
T ss_pred ---CCCHHHHHHHHHh-CCEEEec---CC-cHHHH-HHHcCCCEEEE
Confidence 6778999999995 9999986 22 55555 77799999985
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=80.83 E-value=13 Score=42.91 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=42.1
Q ss_pred HHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCcEEEcCC---------CCc-chhhccCCeEEEECCCCHHHHHHHHH
Q 005444 542 ELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCH---------GGP-AEIIEHGASGFHIDPYHPDQAAELMA 611 (696)
Q Consensus 542 el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlPVvat~~---------gG~-~EiI~dg~~G~l~~p~d~e~la~~I~ 611 (696)
++..++. .+|++|. -++-++.|++..++|||-... -|. -+ ..+..-|-++. +.+++.++|.
T Consensus 608 di~~ll~-~aD~lIT-----DySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d-~~~~~pg~~~~--~~~eL~~~i~ 678 (729)
T 3l7i_A 608 DVSELFL-ISDCLIT-----DYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN-YMEDLPGPIYT--EPYGLAKELK 678 (729)
T ss_dssp CHHHHHH-TCSEEEE-----SSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC-TTSSSSSCEES--SHHHHHHHHT
T ss_pred CHHHHHH-HhCEEEe-----echHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC-hhHhCCCCeEC--CHHHHHHHHh
Confidence 5677777 5999994 567899999999999998621 111 11 11122344443 7888888885
Q ss_pred HHH
Q 005444 612 DFF 614 (696)
Q Consensus 612 ~~l 614 (696)
++.
T Consensus 679 ~~~ 681 (729)
T 3l7i_A 679 NLD 681 (729)
T ss_dssp THH
T ss_pred hhh
Confidence 543
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=78.29 E-value=51 Score=31.87 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=100.1
Q ss_pred EEEEEccccccCChHHHHHHHHHhhccCCCe-EEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccc---
Q 005444 459 IVFSMARLDHVKNMTGLVECYGKNSQLRELV-NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQ--- 534 (696)
Q Consensus 459 iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~-~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~--- 534 (696)
+=-++||-...||.-.+.+.-.+..+ |.- .-|+-|-... ..+- -+++-|++ ..+.|.+
T Consensus 199 inrwigrtttwkgfyqmfdfhekflk--pagkstvmeglers-------------pafi-aikekgip--yeyygnreid 260 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLK--PAGKSTVMEGLERS-------------PAFI-AIKEKGIP--YEYYGNREID 260 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTT--TTTCEEEEECCCCS-------------HHHH-HHHHTTCC--EEEECGGGGG
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcC--ccchhhhhhhhhcC-------------CceE-EEcccCCc--hhhcCcchhh
Confidence 44589999999999999988877654 322 3344442222 1111 12333332 1222210
Q ss_pred ------------cccCChhHHHHHHHccccEEEeCCC------CCCCcHHHHHHHHcCC-cEEEcCCCCcchhh------
Q 005444 535 ------------TNRARNGELYRYIADTKGAFVQPAF------YEAFGLTVVEAMTCGL-PTFATCHGGPAEII------ 589 (696)
Q Consensus 535 ------------~~~v~~~el~~~la~aadvfV~PS~------~E~fGltvlEAMa~Gl-PVvat~~gG~~EiI------ 589 (696)
.+-.-+.|+..-+.. ++...+.|. ....-.+-+|--|||+ ||+--..|....+-
T Consensus 261 kmnlapnqpaqildcyinsemlermsk-sgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpl 339 (401)
T 1xv5_A 261 KMNLAPNQPAQILDCYINSEMLERMSK-SGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPL 339 (401)
T ss_dssp GCCCSSSCCEEEESCCCHHHHHHHHHT-EEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBG
T ss_pred hhcCCCCCcchhhhheecHHHHHHhhh-cCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcc
Confidence 123446788888885 888887764 3456778999999996 55543333222211
Q ss_pred ccCCeE-EEECCCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCHHHH
Q 005444 590 EHGASG-FHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIY 644 (696)
Q Consensus 590 ~dg~~G-~l~~p~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~~~v~~~ysw~~~ 644 (696)
....+| +.++.+|.+..-+.|.++ ..|..+..+-.+.|.+...++-+-.-+
T Consensus 340 tshdsgiiwfdendmestferikel----ssdralydrerekayeflyqhqdssfc 391 (401)
T 1xv5_A 340 TSHDSGIIWFDENDMESTFERIKEL----SSDRALYDREREKAYEFLYQHQDSSFC 391 (401)
T ss_dssp GGSCCSCEEECTTCHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHBHHHH
T ss_pred cccCCceEEecCCchHHHHHHHHHh----ccchhhhhHHHHHHHHHHHhcccccch
Confidence 112345 468999999999999654 489999888888888777665444333
No 67
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=68.49 E-value=57 Score=28.01 Aligned_cols=108 Identities=11% Similarity=0.108 Sum_probs=69.5
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc--cccEEEeCCCC-C-CC
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY-E-AF 563 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~-E-~f 563 (696)
..+++|+.+.+. ....+....++.|. .|... .+..+....+.. ..|++++=... + .-
T Consensus 5 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~ 65 (140)
T 3h5i_A 5 DKKILIVEDSKF-----------QAKTIANILNKYGY--TVEIA------LTGEAAVEKVSGGWYPDLILMDIELGEGMD 65 (140)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEE------SSHHHHHHHHHTTCCCSEEEEESSCSSSCC
T ss_pred CcEEEEEeCCHH-----------HHHHHHHHHHHcCC--EEEEe------cChHHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence 357788876543 35567777777653 34433 234566666643 35787764332 3 45
Q ss_pred cHHHHHHHH--cCCcEEE-cCCC---CcchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 564 GLTVVEAMT--CGLPTFA-TCHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 564 GltvlEAMa--~GlPVva-t~~g---G~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
|+.+++.+. ..+|+|. |... ...+.+..|..+|+..|.+.+++...|..++
T Consensus 66 g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 66 GVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 777766654 4788877 3333 2345566788999999999999999998776
No 68
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=67.69 E-value=79 Score=34.30 Aligned_cols=136 Identities=13% Similarity=0.195 Sum_probs=75.9
Q ss_pred EEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCC--------------CCcchHHHHHHHHHHHHHHHcCC
Q 005444 459 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVN--------------KSKDREEIAEIEKMHELMKTYKL 524 (696)
Q Consensus 459 iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~--------------~~~d~e~~~~~~~l~~li~~~~L 524 (696)
.++++|. .+++..+.+.++...+ +--+++|+|+|.-.. -.+| .++.+.+++++
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~--~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d------~~r~~~la~~l-- 277 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEK--PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERN------LQRAEKLSEEL-- 277 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGS--CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESC------HHHHHHHHHHC--
T ss_pred EEEEEec---cchHHHHHHhhccccc--cccEEEEEcchHHHHHHHHHhhhcCceEEEecC------HHHHHHHHHHC--
Confidence 3445543 5677777777765433 334778888775300 0001 23445555554
Q ss_pred CCcEEEeccccccCChhHHHH--HHHccccEEEeCCCC-CCCcHHHHHHHHcCCcEEEc--CCCCcchhhccCCeEEEEC
Q 005444 525 DGQFRWIAAQTNRARNGELYR--YIADTKGAFVQPAFY-EAFGLTVVEAMTCGLPTFAT--CHGGPAEIIEHGASGFHID 599 (696)
Q Consensus 525 ~~~V~flG~~~~~v~~~el~~--~la~aadvfV~PS~~-E~fGltvlEAMa~GlPVvat--~~gG~~EiI~dg~~G~l~~ 599 (696)
++-+.+.|. ....++.. -+. .+|+||...-. |.-=++.+-|-..|.+-+.+ +.....++++..+-...+.
T Consensus 278 ~~~~Vi~GD----~td~~~L~ee~i~-~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~vis 352 (461)
T 4g65_A 278 ENTIVFCGD----AADQELLTEENID-QVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAIS 352 (461)
T ss_dssp TTSEEEESC----TTCHHHHHHTTGG-GCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEEC
T ss_pred CCceEEecc----ccchhhHhhcCch-hhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeC
Confidence 445666672 33334443 244 38999976543 44344567788899887777 4455666776655556675
Q ss_pred CCCHHHHHHHHHHHH
Q 005444 600 PYHPDQAAELMADFF 614 (696)
Q Consensus 600 p~d~e~la~~I~~~l 614 (696)
|. ...+..|.+.+
T Consensus 353 p~--~~~a~~I~~~i 365 (461)
T 4g65_A 353 PQ--QATISALLTHV 365 (461)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHh
Confidence 42 33455554443
No 69
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=64.62 E-value=61 Score=28.72 Aligned_cols=110 Identities=11% Similarity=0.223 Sum_probs=68.6
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
+.+++||=+.+. ...-+....++.|.. .|.... +-.+....+.. .-|+.+.=- .-+--|+
T Consensus 12 ~~rILiVDD~~~-----------~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG~ 73 (134)
T 3to5_A 12 NMKILIVDDFST-----------MRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQGI 73 (134)
T ss_dssp TCCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Confidence 567788765433 355666777777653 243322 12333344332 246666421 1245588
Q ss_pred HHHHHHH-----cCCcEEE-cCCCCcch---hhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 566 TVVEAMT-----CGLPTFA-TCHGGPAE---IIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 566 tvlEAMa-----~GlPVva-t~~gG~~E---iI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
.+++.+- ..+|||. |..+...+ ..+-|.++|+..|-+++++.++|.++++
T Consensus 74 el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 74 DLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 8888774 4688886 55555443 3456899999999999999999977663
No 70
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=64.59 E-value=60 Score=27.89 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=72.4
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++|+.+... ....+....++.+....|.... +..+....+.. .-|+++.=. ..+.-|+
T Consensus 5 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~ 67 (144)
T 3kht_A 5 SKRVLVVEDNPD-----------DIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGF 67 (144)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHH
T ss_pred CCEEEEEeCCHH-----------HHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHH
Confidence 467888876543 3556777777776543344433 34556665543 247766643 3345678
Q ss_pred HHHHHHHc-----CCcEEEc-CCCCc---chhhccCCeEEEECCC-CHHHHHHHHHHHHH
Q 005444 566 TVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPY-HPDQAAELMADFFG 615 (696)
Q Consensus 566 tvlEAMa~-----GlPVvat-~~gG~---~EiI~dg~~G~l~~p~-d~e~la~~I~~~l~ 615 (696)
.+++.+.. ++|+|+- ..... .+.+..|..+++..|. +.+++.++|..+++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 68 EVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 88888765 6788874 33332 2345678899999999 99999999987774
No 71
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=64.39 E-value=49 Score=28.17 Aligned_cols=106 Identities=7% Similarity=0.042 Sum_probs=65.6
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCCCCCCCcH
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGL 565 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGl 565 (696)
...+++|+.+... ....+....++.|. .|.... +..+....+.. ..|++++| +.-|+
T Consensus 17 ~~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~ 74 (137)
T 2pln_A 17 GSMRVLLIEKNSV-----------LGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNAL 74 (137)
T ss_dssp TCSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHH
T ss_pred CCCeEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHH
Confidence 3467788876543 34556666666554 344332 23455555442 35777733 34466
Q ss_pred HHHHHHH--c-CCcEEEc-CCCC---cchhhccCCeEEEECCC-CHHHHHHHHHHHH
Q 005444 566 TVVEAMT--C-GLPTFAT-CHGG---PAEIIEHGASGFHIDPY-HPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa--~-GlPVvat-~~gG---~~EiI~dg~~G~l~~p~-d~e~la~~I~~~l 614 (696)
.+++.+. . .+|+|.- .... ..+.+..|..+|+..|. +.+++...|..++
T Consensus 75 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 75 SFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 6666664 3 7787764 4333 23444678899999999 9999999997665
No 72
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=56.32 E-value=37 Score=33.11 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 005444 276 TFTEDVGSEITAELQGFPDFIIGNYSD 302 (696)
Q Consensus 276 ~f~~~~~~~i~~~~~~~pDvIh~h~~~ 302 (696)
.....+.+.+... +||+|++++..
T Consensus 82 ~~~~~l~~~ir~~---~P~~V~t~~~~ 105 (227)
T 1uan_A 82 EQRLKLAQALRRL---RPRVVFAPLEA 105 (227)
T ss_dssp HHHHHHHHHHHHH---CEEEEEEECSC
T ss_pred HHHHHHHHHHHHh---CCCEEEeCCCC
Confidence 3445555555554 89999987643
No 73
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=55.36 E-value=99 Score=26.45 Aligned_cols=110 Identities=9% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCc
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFG 564 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fG 564 (696)
...+++|+.+... ....+....++.|. .|.... +..+....+.. ..|++++=. ..+.-|
T Consensus 7 ~~~~iLivd~~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 67 (147)
T 2zay_A 7 KWWRIMLVDTQLP-----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISG 67 (147)
T ss_dssp -CEEEEEECTTGG-----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCH
T ss_pred CCceEEEEeCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCH
Confidence 3578888887654 13455666665553 344332 23455555542 257776543 334567
Q ss_pred HHHHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 565 LTVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 565 ltvlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
+.+++.+.. .+|+|. |..... .+.+..|..+++..|.+.+++...|..++.
T Consensus 68 ~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 888888764 678776 444433 233457889999999999999999988774
No 74
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=55.29 E-value=1.5e+02 Score=30.16 Aligned_cols=149 Identities=11% Similarity=0.004 Sum_probs=88.3
Q ss_pred CEEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEeccccc
Q 005444 458 PIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTN 536 (696)
Q Consensus 458 ~iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~-~V~flG~~~~ 536 (696)
+.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. . .-....+.+..|+.- .|-|.|
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~-------~----hl~~~~l~~~~Gi~~~~Vpy~G---- 177 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV-------L----HLMGESFKMATGTDIVHVPYKG---- 177 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH-------H----HHHHHHHHHHHTCCCEEEECSS----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH-------H----HHHHHHHHHHhCCCeEEcccCC----
Confidence 345555544578999999887765432 355554443322 0 112233445567642 344443
Q ss_pred cCChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCc-EEEc----------CCC-----CcchhhccCCeEEEECC
Q 005444 537 RARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHG-----GPAEIIEHGASGFHIDP 600 (696)
Q Consensus 537 ~v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-Vvat----------~~g-----G~~EiI~dg~~G~l~~p 600 (696)
..+-+..++....|+++... -++.+....|.- +++. +++ |...+....-.|+.++.
T Consensus 178 --~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~ 249 (314)
T 2dvz_A 178 --SGPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPK 249 (314)
T ss_dssp --HHHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEET
T ss_pred --HHHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcC
Confidence 13456666666678877642 245666777742 3332 222 12222222346888998
Q ss_pred CCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 005444 601 YHPDQAAELMADFFGKCKENPSHWKKISDGGL 632 (696)
Q Consensus 601 ~d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~ 632 (696)
+.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 250 g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 250 GTPMDVVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp TCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 88999999999999999999998877766553
No 75
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=54.42 E-value=1.1e+02 Score=26.53 Aligned_cols=109 Identities=9% Similarity=0.167 Sum_probs=72.2
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH----------ccccEEEeCC
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA----------DTKGAFVQPA 558 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la----------~aadvfV~PS 558 (696)
.+++||.+.+. ....+....++.+....|.... +..+....+. ...|++++=.
T Consensus 5 ~~ILivddd~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD~ 67 (152)
T 3heb_A 5 VTIVMIEDDLG-----------HARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLDL 67 (152)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEECS
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEeC
Confidence 57788876543 3566777788777654566543 3456666663 2357776543
Q ss_pred -CCCCCcHHHHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 559 -FYEAFGLTVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 559 -~~E~fGltvlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
..+.-|+.+++.+.. ++|+|. |..... .+.+..|..+|+..|.+.+++.++|..+.
T Consensus 68 ~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 68 NLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 335567888887764 677777 443332 33456788999999999999999987654
No 76
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=53.70 E-value=1.4e+02 Score=30.37 Aligned_cols=148 Identities=9% Similarity=0.037 Sum_probs=87.5
Q ss_pred EEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEecccccc
Q 005444 459 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTNR 537 (696)
Q Consensus 459 iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~-~V~flG~~~~~ 537 (696)
.++.+..=.+.|.+..|+++.++.+. .+++-..|.|.. . .-....+.+..|+.- .|-|.|
T Consensus 113 ~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~-------~----hl~~~~l~~~~Gi~~~~Vpy~G----- 173 (312)
T 2f5x_A 113 MTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA-------S----HLCGTMLVEALGVNLLTIPYKG----- 173 (312)
T ss_dssp EEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH-------H----HHHHHHHHHHHTCCCEEEECSS-----
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH-------H----HHHHHHHHHHHCCCeEEeccCC-----
Confidence 44555444578999999998887653 245544443322 0 112233445567642 234433
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCc-EEEc----------CCCCcc-----hhhccCCeEEEECCC
Q 005444 538 ARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFAT----------CHGGPA-----EIIEHGASGFHIDPY 601 (696)
Q Consensus 538 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-Vvat----------~~gG~~-----EiI~dg~~G~l~~p~ 601 (696)
..+-+..++....|+.+... -++.+.+..|.- +++. +++-.. .+....-.|+.++.+
T Consensus 174 -~~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g 246 (312)
T 2f5x_A 174 -TAPAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKG 246 (312)
T ss_dssp -HHHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCC
Confidence 13455666666678877642 245666777743 3332 122111 121123468889888
Q ss_pred CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 005444 602 HPDQAAELMADFFGKCKENPSHWKKISDGGL 632 (696)
Q Consensus 602 d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~ 632 (696)
.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 247 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 247 TPKPVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998877765553
No 77
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=52.81 E-value=1e+02 Score=25.81 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=70.5
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc--------cccEEEeCCC-
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF- 559 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~- 559 (696)
.+++|+.+... ....+....++.+....|.... +..+....+.. ..|++++=..
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~ 65 (140)
T 1k68_A 3 KKIFLVEDNKA-----------DIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNL 65 (140)
T ss_dssp CEEEEECCCHH-----------HHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSC
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCC
Confidence 46777776543 3556677777666533455543 34566666652 3677776432
Q ss_pred CCCCcHHHHHHHH-----cCCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 560 YEAFGLTVVEAMT-----CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 560 ~E~fGltvlEAMa-----~GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+.-|+.+++.+. ..+|+|.- .... ..+.+..|..|++..|.+.+++...|..++
T Consensus 66 ~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 66 PKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp SSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 3445777777765 46787764 4333 233445688999999999999999997766
No 78
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=52.66 E-value=1.1e+02 Score=26.00 Aligned_cols=110 Identities=10% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCc
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFG 564 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fG 564 (696)
...+++|+.+... ..+.+....++.|. .|.... +..+....+.. ..|++++=. ..+.-|
T Consensus 6 ~~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 66 (142)
T 3cg4_A 6 HKGDVMIVDDDAH-----------VRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDG 66 (142)
T ss_dssp CCCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCH
T ss_pred CCCeEEEEcCCHH-----------HHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 3467888876543 35566677776654 344332 34566666653 246666533 234567
Q ss_pred HHHHHHHHc-----CCcEEE-cCCC---CcchhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 565 LTVVEAMTC-----GLPTFA-TCHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 565 ltvlEAMa~-----GlPVva-t~~g---G~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
+.+++.+.. .+|+|. |... ...+.+..|..+++..|.+.+++...|..++.
T Consensus 67 ~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 67 WDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp HHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 778887754 467776 3332 33455567888999999999999999977763
No 79
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=52.59 E-value=1.1e+02 Score=25.98 Aligned_cols=109 Identities=7% Similarity=0.072 Sum_probs=69.7
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++|+.+... ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 66 (140)
T 3grc_A 6 RPRILICEDDPD-----------IARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGV 66 (140)
T ss_dssp CSEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHH
T ss_pred CCCEEEEcCCHH-----------HHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 357788876543 35566677776654 244432 24455555542 247777643 3355678
Q ss_pred HHHHHHHc-----CCcEEEc-CCCCcc----hhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 566 TVVEAMTC-----GLPTFAT-CHGGPA----EIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 566 tvlEAMa~-----GlPVvat-~~gG~~----EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
.+++.+.. .+|+|.- ...... +.+..|..+|+..|.+.+++..+|..+++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 67 SLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 88887765 6788774 333222 44556889999999999999999987763
No 80
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=51.86 E-value=6.2 Score=39.84 Aligned_cols=33 Identities=18% Similarity=0.492 Sum_probs=25.9
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCC
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
|||+|....|+.| ..|++.|.++||+|. +++|.
T Consensus 1 MkILVTGatGfIG-------------------------~~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGGTGFIG-------------------------TALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp CEEEEETTTSHHH-------------------------HHHHHHHHHTTCEEE----EEESS
T ss_pred CEEEEECCCCHHH-------------------------HHHHHHHHHCCCEEE----EEECC
Confidence 7999888777642 156778899999998 88875
No 81
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=49.82 E-value=1.1e+02 Score=25.51 Aligned_cols=108 Identities=15% Similarity=0.277 Sum_probs=68.6
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc--cccEEEeCC-CCCCCcH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS-~~E~fGl 565 (696)
.+++|+.+.+. ..+.+....++.|.. .|.... +..+....+.. ..|+++.=. ..+.-|+
T Consensus 6 ~~iLivdd~~~-----------~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~ 67 (129)
T 3h1g_A 6 MKLLVVDDSST-----------MRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGL 67 (129)
T ss_dssp CCEEEECSCHH-----------HHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHH
T ss_pred cEEEEEeCCHH-----------HHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHH
Confidence 56777776543 355677777777643 243332 23444444432 257776532 2355578
Q ss_pred HHHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+.. .+|+|. |..+.. .+.+..|..+|+..|.+++++.++|..++
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 68 DLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 88888764 578877 444443 23456788999999999999999997765
No 82
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=49.38 E-value=1.2e+02 Score=25.69 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=71.0
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH-----------ccccEEEe
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-----------DTKGAFVQ 556 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la-----------~aadvfV~ 556 (696)
..+++|+.+.+. ....+....++.+....|.... +..+....+. ...|+++.
T Consensus 6 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 6 TQPLLVVEDSDE-----------DFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp TSCEEEECCCHH-----------HHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 356777776543 3556677777766533455543 2456666665 23577776
Q ss_pred CCC-CCCCcHHHHHHHH-----cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 557 PAF-YEAFGLTVVEAMT-----CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 557 PS~-~E~fGltvlEAMa-----~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
=.. .+.-|+.+++.+. ..+|+|.. ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 69 D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp CSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 432 3445778888775 45787764 43332 33445688999999999999999997766
No 83
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=47.72 E-value=6.4 Score=39.29 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=24.9
Q ss_pred CceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCC
Q 005444 161 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 161 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
+|+|||+|.+. |+.| . .+++.|.++||+|. +++|.
T Consensus 3 ~m~~~ilVtGa-G~iG--------------~-----------~l~~~L~~~g~~V~----~~~r~ 37 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTA--------------R-----------VLSRALAPQGWRII----GTSRN 37 (286)
T ss_dssp --CCEEEEETC-CHHH--------------H-----------HHHHHHGGGTCEEE----EEESC
T ss_pred CCcCcEEEECC-cHHH--------------H-----------HHHHHHHHCCCEEE----EEEcC
Confidence 57899999975 6632 1 55667888999998 88776
No 84
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=47.61 E-value=55 Score=32.32 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 005444 275 ETFTEDVGSEITAELQGFPDFIIGNYSD 302 (696)
Q Consensus 275 ~~f~~~~~~~i~~~~~~~pDvIh~h~~~ 302 (696)
......+.+.+.+. +||+|++++..
T Consensus 83 ~~~~~~l~~~ir~~---~PdvV~t~~~~ 107 (242)
T 2ixd_A 83 EEYIREIVKVIRTY---KPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHHH---CCSEEEEECSC
T ss_pred HHHHHHHHHHHHHc---CCCEEEECCCC
Confidence 34445555555554 89999987653
No 85
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=45.39 E-value=98 Score=26.78 Aligned_cols=75 Identities=8% Similarity=0.100 Sum_probs=48.3
Q ss_pred hhHHHHHHHc-cccEEEeCC-CCCCCcHHHHHHHHc---CCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHH
Q 005444 540 NGELYRYIAD-TKGAFVQPA-FYEAFGLTVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELM 610 (696)
Q Consensus 540 ~~el~~~la~-aadvfV~PS-~~E~fGltvlEAMa~---GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I 610 (696)
..+....+.. ..|++++=. ..+.-|+.+++.+.. .+|+|.- .... ..+.+..|..+|+..|.+.+++.++|
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 3455555542 246666533 234556777666543 5777763 3332 34455678899999999999999999
Q ss_pred HHHH
Q 005444 611 ADFF 614 (696)
Q Consensus 611 ~~~l 614 (696)
..++
T Consensus 135 ~~~~ 138 (150)
T 4e7p_A 135 HTVL 138 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 86
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=42.08 E-value=1.4e+02 Score=30.29 Aligned_cols=148 Identities=16% Similarity=0.071 Sum_probs=84.2
Q ss_pred EEEEEccccccCChHHHHHHHHHhhccCCCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCC-cEEEecccccc
Q 005444 459 IVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG-QFRWIAAQTNR 537 (696)
Q Consensus 459 iIl~vGRL~~~Kgi~~Llea~~~l~~~~~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~-~V~flG~~~~~ 537 (696)
.++.+..=.+.|.+..|+++.++.+ ..+++-..|.|.. . .-....+.+..|+.- +|-+.|
T Consensus 104 ~~lvv~~~s~~~sl~dL~~~ak~~p---~~~~~g~~g~Gs~-------~----hl~~~~l~~~~G~~~~~Vpy~g----- 164 (301)
T 2qpq_A 104 SVFVVPAGSKYKTLGELMAAAKQTN---TQVTYGSCGNGTP-------Q----HLAGELLNVSAKTHMVHVPYKG----- 164 (301)
T ss_dssp EEEEEETTCSCCSHHHHHHHTCSSS---CCCEEEESSTTSH-------H----HHHHHHHHHHHTCCCEEEECSS-----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC---CceEEecCCCCcH-------H----HHHHHHHHHHhCCCeEEeccCC-----
Confidence 4444444457888988887654332 1345444443322 0 112233445567642 344444
Q ss_pred CChhHHHHHHHccccEEEeCCCCCCCcHHHHHHHHcCCc-EEE-c---------CCCCcch-----hhccCCeEEEECCC
Q 005444 538 ARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLP-TFA-T---------CHGGPAE-----IIEHGASGFHIDPY 601 (696)
Q Consensus 538 v~~~el~~~la~aadvfV~PS~~E~fGltvlEAMa~GlP-Vva-t---------~~gG~~E-----iI~dg~~G~l~~p~ 601 (696)
..+-+..++....|+++.. .-++.+....|.- +++ + +++-..| +....-.|+.++.+
T Consensus 165 -~~~a~~al~~G~vD~~~~~------~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 237 (301)
T 2qpq_A 165 -CGPALNDVLGSQIGLAVVT------ASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGA 237 (301)
T ss_dssp -HHHHHHHHHTTSSSCEEEE------HHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHCCCccEEEEc------HHHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCC
Confidence 1345556666567777654 1245666777743 233 1 1121111 11123468888888
Q ss_pred CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 005444 602 HPDQAAELMADFFGKCKENPSHWKKISDGGL 632 (696)
Q Consensus 602 d~e~la~~I~~~l~~l~~dp~~~~~m~~~a~ 632 (696)
-++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 238 ~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 238 TPMAVRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998877766553
No 87
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=41.51 E-value=1.1e+02 Score=30.99 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
.+++.|.++|+++. |+++.+.
T Consensus 39 ~l~~~L~~~g~~~~--v~~~~~~ 59 (346)
T 4egb_A 39 NFVHYMLQSYETYK--IINFDAL 59 (346)
T ss_dssp HHHHHHHHHCTTEE--EEEEECC
T ss_pred HHHHHHHhhCCCcE--EEEEecc
Confidence 45567889997665 2244443
No 88
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=41.11 E-value=24 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=25.2
Q ss_pred eeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005444 163 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 216 (696)
Q Consensus 163 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~ 216 (696)
.|||+||..| |+.++. ..+|.+...+++.++||+|+
T Consensus 22 ~MKiLII~aH-----------P~~~S~-------n~aL~~~~~~~l~~~G~eV~ 57 (280)
T 4gi5_A 22 SMKVLLIYAH-----------PEPRSL-------NGALKNFAIRHLQQAGHEVQ 57 (280)
T ss_dssp CCEEEEEECC-----------SCTTSH-------HHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEeC-----------CCCccH-------HHHHHHHHHHHHHHCCCeEE
Confidence 4799999766 233332 33445567788999999998
No 89
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.60 E-value=98 Score=24.83 Aligned_cols=105 Identities=8% Similarity=0.095 Sum_probs=63.4
Q ss_pred EEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcHHH
Q 005444 490 NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLTV 567 (696)
Q Consensus 490 ~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGltv 567 (696)
+++|+.+.+. ....+....++.|. +|.... +..+....+.. ..|+++.-. ..+.-|..+
T Consensus 3 ~iliv~~~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~ 63 (119)
T 2j48_A 3 HILLLEEEDE-----------AATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLL 63 (119)
T ss_dssp EEEEECCCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHH
T ss_pred EEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 5667765543 34556666666554 344432 23444444432 247766543 234457777
Q ss_pred HHHHH-----cCCcEEE-cCCCCcchhhccCCeEEEECCCCHHHHHHHHHHH
Q 005444 568 VEAMT-----CGLPTFA-TCHGGPAEIIEHGASGFHIDPYHPDQAAELMADF 613 (696)
Q Consensus 568 lEAMa-----~GlPVva-t~~gG~~EiI~dg~~G~l~~p~d~e~la~~I~~~ 613 (696)
++.+. ..+|+|. |..+...+....|..+++..|.+.+++...|..+
T Consensus 64 ~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 64 LQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp HHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred HHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 77775 4677776 3333222666678889999999999998888543
No 90
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=39.05 E-value=1.7e+02 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=25.9
Q ss_pred eeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCC
Q 005444 163 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIP 227 (696)
Q Consensus 163 ~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~ 227 (696)
+|||++....|+.. ..+. .|++.|++.| +|. |+.+...
T Consensus 1 ~M~ILlTNDDGi~a--------------pGi~--------aL~~~l~~~g-~V~----VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFS--------------PGIN--------ALREALKSLG-RVV----VVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTC--------------HHHH--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CCEEEEECCCCCCC--------------HHHH--------HHHHHHHhcC-CEE----EEecCCC
Confidence 38999999888732 2344 4555678888 887 8887644
No 91
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.71 E-value=1.4e+02 Score=24.99 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=64.9
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCCC-C-----C
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-Y-----E 561 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~-----E 561 (696)
.+++|+.+.+. ....+....++.+. .|.... +..+....+.. ..|++++=.. . +
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKG-----------VLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCC
Confidence 56777776543 34556666665543 344332 24455555543 2466665332 2 4
Q ss_pred CCcHHHHHHHH---cCCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 562 AFGLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 562 ~fGltvlEAMa---~GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 65 NEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 45666666654 47888774 3332 234445688999999999999999997766
No 92
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=38.24 E-value=98 Score=26.49 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=43.1
Q ss_pred cccEEEeCCC-CCCCcHHHHHHHH---cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 550 TKGAFVQPAF-YEAFGLTVVEAMT---CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 550 aadvfV~PS~-~E~fGltvlEAMa---~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
..|++++=.. .+.-|+.+++.+. ..+|+|.- ..... .+.+..|..+|+..|.+.+++..+|..++.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 3567665322 2334566665554 36777763 43332 344567889999999999999999987763
No 93
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=37.56 E-value=3.2e+02 Score=27.12 Aligned_cols=113 Identities=17% Similarity=0.099 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhccCCCe-EEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHcc
Q 005444 472 MTGLVECYGKNSQLRELV-NLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT 550 (696)
Q Consensus 472 i~~Llea~~~l~~~~~~~-~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~a 550 (696)
+..-++.+.++. |+. ++.++++..+ .......+.+++.++++|+. +....... .....+....+...
T Consensus 126 ~~~~l~l~~~l~---P~~k~vgvi~~~~~------~~s~~~~~~~~~~~~~~g~~--~v~~~~~~-~~~~~~~~~~l~~~ 193 (302)
T 3lkv_A 126 VEQHVELIKEIL---PNVKSIGVVYNPGE------ANAVSLMELLKLSAAKHGIK--LVEATALK-SADVQSATQAIAEK 193 (302)
T ss_dssp HHHHHHHHHHHS---TTCCEEEEEECTTC------HHHHHHHHHHHHHHHHTTCE--EEEEECSS-GGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEEeCCCc------ccHHHHHHHHHHHHHHcCCE--EEEEecCC-hHHHHHHHHhccCC
Confidence 444455555443 433 4666665433 22334566788888888763 43333211 12223333444445
Q ss_pred ccEEEeCCCC---CCCcHHHHHHHHcCCcEEEcCCCCcchhhccCC-eEEEECC
Q 005444 551 KGAFVQPAFY---EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGA-SGFHIDP 600 (696)
Q Consensus 551 advfV~PS~~---E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~-~G~l~~p 600 (696)
.|++..|... .+......-+..+++||++... ..+..|. .|+.+++
T Consensus 194 ~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~----~~v~~G~l~~~~~~~ 243 (302)
T 3lkv_A 194 SDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT----SYVERGAIASLGFDY 243 (302)
T ss_dssp CSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH----HHHHTTCSEEEECCH
T ss_pred eeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc----ccccCCceEEEecCH
Confidence 7888777542 2223334556789999998653 3444444 3455543
No 94
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=36.73 E-value=1.9e+02 Score=24.32 Aligned_cols=106 Identities=6% Similarity=0.048 Sum_probs=60.1
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcHH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 566 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 566 (696)
.+++|+.+.+. ....+..+.++. -.|.... +..+....+.. .-|++++-. ..+.-|+.
T Consensus 4 ~~iLivdd~~~-----------~~~~l~~~l~~~---~~v~~~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~ 63 (140)
T 3n53_A 4 KKILIIDQQDF-----------SRIELKNFLDSE---YLVIESK------NEKEALEQIDHHHPDLVILDMDIIGENSPN 63 (140)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHTTT---SEEEEES------SHHHHHHHHHHHCCSEEEEETTC------C
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHhc---ceEEEeC------CHHHHHHHHhcCCCCEEEEeCCCCCCcHHH
Confidence 46777765533 234455555443 2344332 23455555432 247766543 23444666
Q ss_pred HHHHHH-----cCCcEEEc-CCC---CcchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 567 VVEAMT-----CGLPTFAT-CHG---GPAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 567 vlEAMa-----~GlPVvat-~~g---G~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+++.+. ..+|+|.. ... ...+.+..|..+|+..|.+.+++..+|..++
T Consensus 64 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 64 LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp HHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 666665 56788763 332 3344556788999999999999999997766
No 95
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=36.15 E-value=2.1e+02 Score=24.57 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=64.8
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHcc-c-cEEEeCC-CCCCCc
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT-K-GAFVQPA-FYEAFG 564 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~a-a-dvfV~PS-~~E~fG 564 (696)
..+++|+.+.+. ..+.+....+. + -.|... .+..+....+... . |++++=. ..+.-|
T Consensus 4 ~~~ILivdd~~~-----------~~~~l~~~L~~-~--~~v~~~------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g 63 (151)
T 3kcn_A 4 NERILLVDDDYS-----------LLNTLKRNLSF-D--FEVTTC------ESGPEALACIKKSDPFSVIMVDMRMPGMEG 63 (151)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHTT-T--SEEEEE------SSHHHHHHHHHHSCCCSEEEEESCCSSSCH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHhcc-C--ceEEEe------CCHHHHHHHHHcCCCCCEEEEeCCCCCCcH
Confidence 357788876543 23444444432 2 234433 2345666666543 2 7777533 345557
Q ss_pred HHHHHHHH---cCCcEEE-cCCCC---cchhhccC-CeEEEECCCCHHHHHHHHHHHH
Q 005444 565 LTVVEAMT---CGLPTFA-TCHGG---PAEIIEHG-ASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 565 ltvlEAMa---~GlPVva-t~~gG---~~EiI~dg-~~G~l~~p~d~e~la~~I~~~l 614 (696)
+.+++.+. ..+|+|. |.... ..+.+..| ..+|+..|.+.+++..+|..++
T Consensus 64 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 64 TEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp HHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 77766654 4677776 33333 23444567 7899999999999999998776
No 96
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.64 E-value=2e+02 Score=24.71 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=65.5
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcHH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 566 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 566 (696)
.+++|+.+.+. ....+.....+.|. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 4 ~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 4 PSVFLIDDDRD-----------LRKAMQQTLELAGF--TVSSFA------SATEALAGLSADFAGIVISDIRMPGMDGLA 64 (155)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHcCc--EEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 56777776543 34556666666554 344332 23444444432 247766533 23445666
Q ss_pred HHHHHH---cCCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 567 VVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 567 vlEAMa---~GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 65 LFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp HHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 666654 47888774 3333 234456788999999999999999997766
No 97
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=34.58 E-value=24 Score=33.85 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=39.0
Q ss_pred HHHHHccccEEEeCCCCCCCcH--HHHHHHHcCCcEEEcCCCCcc-hhhc----cC-------CeEEEECCCCHHHHHHH
Q 005444 544 YRYIADTKGAFVQPAFYEAFGL--TVVEAMTCGLPTFATCHGGPA-EIIE----HG-------ASGFHIDPYHPDQAAEL 609 (696)
Q Consensus 544 ~~~la~aadvfV~PS~~E~fGl--tvlEAMa~GlPVvat~~gG~~-EiI~----dg-------~~G~l~~p~d~e~la~~ 609 (696)
-+.+...+|+||... -++|. .+.||+..|+||++-+..|.- +.+. +| ..-+.+ .+|++++.+.
T Consensus 112 k~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~-~~~~ee~~~~ 188 (195)
T 1rcu_A 112 SFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQ-AWTVEEAVQI 188 (195)
T ss_dssp HHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEE-ESSHHHHHHH
T ss_pred HHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEE-eCCHHHHHHH
Confidence 344544577766531 34554 478999999999998655433 2332 11 112323 3488888777
Q ss_pred HHH
Q 005444 610 MAD 612 (696)
Q Consensus 610 I~~ 612 (696)
|.+
T Consensus 189 l~~ 191 (195)
T 1rcu_A 189 IEQ 191 (195)
T ss_dssp HHT
T ss_pred HHH
Confidence 754
No 98
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=34.40 E-value=33 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=23.4
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHH-HHHcCCCcc
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLR-IKRQGLDIS 216 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~-L~~~G~eV~ 216 (696)
|+|||++|+.+ |..+|....+. +.+++. +.+.|++|.
T Consensus 1 mMmkilii~gS-----------~r~~g~t~~la-------~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAISGS-----------PSRNSTTAKLA-------EYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEECC-----------SSTTCHHHHHH-------HHHHHHHHHHSSEEEE
T ss_pred CCceEEEEECC-----------CCCCChHHHHH-------HHHHHHHHHHCCCeEE
Confidence 56899999632 33345433333 356667 788898887
No 99
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.54 E-value=2.3e+02 Score=24.41 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=71.3
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~ 67 (154)
T 3gt7_A 7 AGEILIVEDSPT-----------QAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGY 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHH
T ss_pred CCcEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Confidence 467888876543 35566666766553 343332 34556666543 247766643 3345577
Q ss_pred HHHHHHH-----cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHHHhhh
Q 005444 566 TVVEAMT-----CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFGKCK 618 (696)
Q Consensus 566 tvlEAMa-----~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~l~ 618 (696)
.+++.+. ..+|+|+. ..... .+.+..|..+|+..|.+.+++..+|..++....
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 8887775 46788774 33332 334456889999999999999999988875433
No 100
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.18 E-value=2.3e+02 Score=24.23 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=65.4
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH-ccccEEEeCC-CCCCCc
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFG 564 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fG 564 (696)
+..+++|+.+.+. ..+.+..+.++.+....|... .+..+....+. ...|++++=. ..+.-|
T Consensus 14 ~~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g 76 (152)
T 3eul_A 14 EKVRVVVGDDHPL-----------FREGVVRALSLSGSVNVVGEA------DDGAAALELIKAHLPDVALLDYRMPGMDG 76 (152)
T ss_dssp CCEEEEEECSSHH-----------HHHHHHHHHHHHSSEEEEEEE------SSHHHHHHHHHHHCCSEEEEETTCSSSCH
T ss_pred ceEEEEEEcCCHH-----------HHHHHHHHHhhCCCeEEEEEe------CCHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 4567777776543 244556666655421112222 12344444443 2256666532 334556
Q ss_pred HHHHHHHH---cCCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 565 LTVVEAMT---CGLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 565 ltvlEAMa---~GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+.+++.+. ..+|||. |..... .+.+..|..||+..|.+.+++.++|..++
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 77776664 3567776 443332 34456788999999999999999998776
No 101
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=32.88 E-value=2.6e+02 Score=27.57 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred hCCCCeEEEE--e-CCC--------chHHHHHHhhcCCCcEEEEec
Q 005444 289 LQGFPDFIIG--N-YSD--------GNLVASLLAYKMGITQCTIAH 323 (696)
Q Consensus 289 ~~~~pDvIh~--h-~~~--------~~l~a~lla~~~gip~v~t~H 323 (696)
+..+||+|++ | ... +-..|++-+..+|+|-|-.-.
T Consensus 83 ~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 83 MDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp STTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3569999973 2 111 134566667788999876644
No 102
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=32.86 E-value=2.2e+02 Score=23.89 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=69.0
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-------cccEEEeCC-C
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-------TKGAFVQPA-F 559 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-------aadvfV~PS-~ 559 (696)
..+++|+.+.+. ....+....++.+....|.... +..+....+.. ..|++++=. .
T Consensus 7 ~~~ILivdd~~~-----------~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l 69 (143)
T 2qvg_A 7 KVDILYLEDDEV-----------DIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINI 69 (143)
T ss_dssp CCSEEEECCCHH-----------HHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTC
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCC
Confidence 356778876543 3556677777766543566543 24566666652 367777543 2
Q ss_pred CCCCcHHHHHHHH-----cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHH
Q 005444 560 YEAFGLTVVEAMT-----CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMAD 612 (696)
Q Consensus 560 ~E~fGltvlEAMa-----~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~ 612 (696)
.+.-|+.+++.+. ..+|+|.. ..... .+.+..|..+++..|.+.+++.+++..
T Consensus 70 ~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 70 PKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp TTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 3445777887775 46787764 33322 344456889999999999999888643
No 103
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=31.79 E-value=2.2e+02 Score=23.51 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=65.7
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH-ccccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA-DTKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la-~aadvfV~PS-~~E~fGl 565 (696)
..+++|+.+.+. ....+....++.+. .|.... +..+....+. ...|+++.-. ..+.-|+
T Consensus 6 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 66 (132)
T 3lte_A 6 SKRILVVDDDQA-----------MAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGL 66 (132)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHH
T ss_pred CccEEEEECCHH-----------HHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 357788876543 34556666666543 344332 2345555543 2357766543 3345578
Q ss_pred HHHHHHHc-----CCcEEEcCCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMTC-----GLPTFATCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa~-----GlPVvat~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+.. ..|++.+.... ..+.+..|..+|+..|.+.+++.++|....
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 67 DVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 88887753 34555553322 234456788999999999999999997655
No 104
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.77 E-value=2.2e+02 Score=23.47 Aligned_cols=108 Identities=8% Similarity=0.063 Sum_probs=63.9
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc--cccEEEeCCC-CC-CC
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YE-AF 563 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E-~f 563 (696)
..+++|+.+.+. ....+....+..|. .|.... +..+....+.. ..|++++=.. .+ .-
T Consensus 5 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~ 65 (132)
T 2rdm_A 5 AVTILLADDEAI-----------LLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPD 65 (132)
T ss_dssp SCEEEEECSSHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSC
T ss_pred CceEEEEcCcHH-----------HHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCC
Confidence 467888876543 34556666666554 344322 34566666654 2577765432 33 45
Q ss_pred cHHHHHHHH---cCCcEEEc-CCCCcchhhcc-CCeEEEECCCCHHHHHHHHHHHH
Q 005444 564 GLTVVEAMT---CGLPTFAT-CHGGPAEIIEH-GASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 564 GltvlEAMa---~GlPVvat-~~gG~~EiI~d-g~~G~l~~p~d~e~la~~I~~~l 614 (696)
|+.+++.+. ..+|+|.. ..........- ...|++..|.+.+++...|..++
T Consensus 66 g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 66 GWQVARVAREIDPNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHH
Confidence 677776664 36788764 33332222211 11379999999999999997766
No 105
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=31.68 E-value=93 Score=31.99 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCccceeEEEeCCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRLI 226 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~~ 226 (696)
.+++.|.++|++|. ++++..
T Consensus 39 ~l~~~L~~~g~~V~----~~~r~~ 58 (375)
T 1t2a_A 39 YLAEFLLEKGYEVH----GIVRRS 58 (375)
T ss_dssp HHHHHHHHTTCEEE----EEECCC
T ss_pred HHHHHHHHCCCEEE----EEECCc
Confidence 45567788999887 877763
No 106
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.93 E-value=2.4e+02 Score=23.69 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=65.2
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCCCCCCCcHH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLT 566 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGlt 566 (696)
..+++|+.+... ....+....++.|. .|.... +..+....+.. ..|+++.=...+.-|+.
T Consensus 4 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~ 64 (142)
T 2qxy_A 4 TPTVMVVDESRI-----------TFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLN 64 (142)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHH
Confidence 356777776543 34556666666554 344332 24455555543 24676654322334555
Q ss_pred HHHHHH---cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 567 VVEAMT---CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 567 vlEAMa---~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+++.+. ..+|+|.- ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 65 ~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 65 LIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 665553 36888764 43332 33445688999999999999999998776
No 107
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=30.68 E-value=2.5e+02 Score=23.94 Aligned_cols=110 Identities=9% Similarity=0.087 Sum_probs=67.6
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc--------cccEEEeCCC
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD--------TKGAFVQPAF 559 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~--------aadvfV~PS~ 559 (696)
..+++|+.+.+. ....+....++.+....|.... +..+....+.. ..|++++=-.
T Consensus 8 ~~~ILivdd~~~-----------~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 8 PKVILLVEDSKA-----------DSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CEEEEEECCCHH-----------HHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCeEEEEECCHH-----------HHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 467888876543 3445666666544322343322 24566666652 3577776332
Q ss_pred -CCCCcHHHHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 560 -YEAFGLTVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 560 -~E~fGltvlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
...-|+.+++.+.. .+|+|. |..... .+.+..|..||+..|.+.+++..+|..++
T Consensus 71 lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp CSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 23457777777753 567766 444332 34456688999999999999999987654
No 108
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=30.62 E-value=2.5e+02 Score=27.66 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=22.7
Q ss_pred hCCCCeEEEE--eC-CC--------chHHHHHHhhcCCCcEEEEec
Q 005444 289 LQGFPDFIIG--NY-SD--------GNLVASLLAYKMGITQCTIAH 323 (696)
Q Consensus 289 ~~~~pDvIh~--h~-~~--------~~l~a~lla~~~gip~v~t~H 323 (696)
+..+||+|++ |. .. +-..|++-+..+|+|-|-.-.
T Consensus 84 l~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 84 LFGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp HSCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 4679999973 21 11 234566667788999876644
No 109
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=30.60 E-value=21 Score=35.93 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=24.9
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCC
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
|.|+|+|.+..|+. .. .+++.|.++|++|. ++++.
T Consensus 1 M~~~vlVtGatG~i--------------G~-----------~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFL--------------GQ-----------YVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHH--------------HH-----------HHHHHHHHTTCEEE----EEESC
T ss_pred CCCEEEEECCCcHH--------------HH-----------HHHHHHHhCCCEEE----EEeCC
Confidence 56889888765553 22 45567889999888 88877
No 110
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=30.14 E-value=2.4e+02 Score=24.08 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=65.4
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHc-CCCCcEEEeccccccCChhHHHHHHHc--cccEEEeCCC-CCCC
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTY-KLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAF-YEAF 563 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~-~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~-~E~f 563 (696)
..+++|+.+.+. ....+....++. +. ..|.... +..+....+.. ..|++++-.. .+.-
T Consensus 3 ~~~iLivdd~~~-----------~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~ 64 (154)
T 2qsj_A 3 LTVVLIVDDHHL-----------IRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAE 64 (154)
T ss_dssp CEEEEEECSCHH-----------HHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------
T ss_pred ccEEEEEcCCHH-----------HHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCc
Confidence 367788876543 345666666665 32 1233332 34566666653 3577776432 2344
Q ss_pred cHHHHHHHH---cCCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 564 GLTVVEAMT---CGLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 564 GltvlEAMa---~GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
|+.+++.+. .++|+|.. .... ..+.+..|..|++..|.+.+++..+|..++.
T Consensus 65 g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 65 AIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILE 123 (154)
T ss_dssp CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHc
Confidence 677766664 46888874 3322 2344467889999999999999999987763
No 111
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=29.89 E-value=2.5e+02 Score=23.60 Aligned_cols=108 Identities=10% Similarity=0.152 Sum_probs=65.7
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCCC-CCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAF-YEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~-~E~fGl 565 (696)
..+++|+.+.+. ....+....+..+. .|.... +..+....+.. ..|++++=.. ...-|+
T Consensus 4 ~~~Ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~ 64 (136)
T 2qzj_A 4 QTKILIIDGDKD-----------NCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGW 64 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 357788876543 34556666665443 343322 23455555542 2477765322 233567
Q ss_pred HHHHHHHc--CCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMTC--GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa~--GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+.. .+|+|.- .... ..+.+..|..+|+..|.+.+++..+|..++
T Consensus 65 ~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 65 TLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 77777653 5777763 4333 234456788999999999999999997765
No 112
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=29.56 E-value=2.5e+02 Score=23.55 Aligned_cols=107 Identities=10% Similarity=0.167 Sum_probs=68.5
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH---ccccEEEeCC-CCCCCc
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA---DTKGAFVQPA-FYEAFG 564 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la---~aadvfV~PS-~~E~fG 564 (696)
.+++|+.+.+. ..+.+....++.+. .|.... +..+....+. ...|++++=. ..+.-|
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g 64 (143)
T 3jte_A 4 AKILVIDDEST-----------ILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSG 64 (143)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCH
T ss_pred CEEEEEcCCHH-----------HHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcH
Confidence 56778876543 35566777776653 344332 3455566655 2367776533 345557
Q ss_pred HHHHHHHH---cCCcEEE-cCCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 565 LTVVEAMT---CGLPTFA-TCHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 565 ltvlEAMa---~GlPVva-t~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+.+++.+. ..+|+|. |.... ..+.+..|..+|+..|.+.+++..+|..++
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 77766654 3677776 34333 234556788999999999999999997776
No 113
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=29.45 E-value=78 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=19.0
Q ss_pred CCCeEEEEeCCCc--hHHHHHHhhc-CCCcEEE
Q 005444 291 GFPDFIIGNYSDG--NLVASLLAYK-MGITQCT 320 (696)
Q Consensus 291 ~~pDvIh~h~~~~--~l~a~lla~~-~gip~v~ 320 (696)
.+.|+|++...+. +..+...++. .+.+.++
T Consensus 64 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 64 SKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp CTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEE
T ss_pred ccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEE
Confidence 4789888766553 6666666665 5655443
No 114
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=29.05 E-value=1.6e+02 Score=29.64 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=15.1
Q ss_pred hhccccCCHHHHHHHHHHHHHHhcCCCCC
Q 005444 80 MLNDRIQSISRLQSSLSKAEDHLSKLPPD 108 (696)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (696)
+++++|.|.++++.. -.-.|..+|..
T Consensus 21 ~ld~~i~~~~~ie~~---g~pvlg~iP~~ 46 (299)
T 3cio_A 21 HIGSGVEAPEQLEEH---GISVYATIPMS 46 (299)
T ss_dssp ----CCCCTHHHHTT---TCCEEEEEECC
T ss_pred HHhCCcCCHHHHHhC---CCCEEEEecCc
Confidence 678899999988753 45566666654
No 115
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.81 E-value=1.8e+02 Score=24.56 Aligned_cols=108 Identities=15% Similarity=0.250 Sum_probs=67.8
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccccCChhHHHHHHHc--cccEEEeCCCC--CC
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD--TKGAFVQPAFY--EA 562 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~-~~L~~~V~flG~~~~~v~~~el~~~la~--aadvfV~PS~~--E~ 562 (696)
..+++|+.+.+. ....+..+.++ .+. .|.... +..+....+.. .-|++++=... +.
T Consensus 4 ~~~ilivdd~~~-----------~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~ 64 (140)
T 3lua_A 4 DGTVLLIDYFEY-----------EREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEK 64 (140)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHH
T ss_pred CCeEEEEeCCHH-----------HHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence 356777776543 34566666766 544 344332 23455555542 35777765432 33
Q ss_pred CcHHHHHHHHc-----CCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 563 FGLTVVEAMTC-----GLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 563 fGltvlEAMa~-----GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
-|+.+++.+.. .+|+|.- ..... .+.+..|..+|+..|.+.+++.++|..++
T Consensus 65 ~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 65 EGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 46777776654 7888874 33332 34446788999999999999999998776
No 116
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.26 E-value=2.8e+02 Score=23.69 Aligned_cols=108 Identities=9% Similarity=0.137 Sum_probs=65.5
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++||.+.+. ....+....++.|. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (154)
T 2rjn_A 7 NYTVMLVDDEQP-----------ILNSLKRLIKRLGC--NIITFT------SPLDALEALKGTSVQLVISDMRMPEMGGE 67 (154)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHTTTC--EEEEES------CHHHHHHHHTTSCCSEEEEESSCSSSCHH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHH
Confidence 467888876543 34556666665543 344332 24455665543 247766533 2344566
Q ss_pred HHHHHHH---cCCcEEEc-CCCCc---chhhccC-CeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMT---CGLPTFAT-CHGGP---AEIIEHG-ASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa---~GlPVvat-~~gG~---~EiI~dg-~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+. ..+|+|.- ..... .+.+..| ..+++..|.+.+++...|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp HHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 6666653 46787764 33332 2333455 7899999999999999997766
No 117
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.73 E-value=67 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=23.5
Q ss_pred CceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005444 161 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 216 (696)
Q Consensus 161 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~ 216 (696)
|..|||+++|..|. |....+. .|.+.+.+.|+++.
T Consensus 2 ~~~mkIlvvC~~G~-------------~TSll~~--------kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 2 PGSMNILLVCGAGM-------------STSMLVQ--------RIEKYAKSKNINAT 36 (109)
T ss_dssp CCCEEEEEESSSSC-------------SSCHHHH--------HHHHHHHHHTCSEE
T ss_pred CCceEEEEECCChH-------------hHHHHHH--------HHHHHHHHCCCCeE
Confidence 44589999998775 2222222 55667888999876
No 118
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.71 E-value=2.7e+02 Score=23.22 Aligned_cols=110 Identities=6% Similarity=0.102 Sum_probs=68.5
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHH-cCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCc
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKT-YKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFG 564 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~-~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fG 564 (696)
..+++|+.+.+. ....+....++ .+.. .|.... +..+....+.. ..|++++-. ..+.-|
T Consensus 8 ~~~iLivdd~~~-----------~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDKE-----------FADMLTQFLENLFPYA-KIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCHH-----------HHHHHHHHHHHHCTTC-EEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCH
T ss_pred CceEEEEECCHH-----------HHHHHHHHHHhccCcc-EEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcH
Confidence 467888876543 34556666666 5542 144432 23455555442 257776543 234457
Q ss_pred HHHHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHHH
Q 005444 565 LTVVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFG 615 (696)
Q Consensus 565 ltvlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l~ 615 (696)
+.+++.+.. .+|+|. |..... .+.+..|..+++..|.+.+++..+|..++.
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 778877754 578776 444433 344567889999999999999999977763
No 119
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.40 E-value=57 Score=32.66 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 216 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~ 216 (696)
++|||++|..|- ..+|. .++|.+.+++.+.+.|++|.
T Consensus 1 ~MmkiLiI~gSp-----------r~~s~-------t~~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAHS-----------ERTSF-------NYAMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECCS-----------CTTSH-------HHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeCC-----------CCccH-------HHHHHHHHHHHHHhCCCeEE
Confidence 357999997553 32342 23344466777888999987
No 120
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=27.36 E-value=3.1e+02 Score=24.22 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=27.4
Q ss_pred chHHHHhcCCCceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCC
Q 005444 151 STLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 151 ~~~~~~~~~~p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
..++.|+.+ +.+|++|....-| |-... .+++.|.+.|++|. .+.+.
T Consensus 4 ~~l~~ll~~---p~~IavIGas~~~-----------g~~G~-----------~~~~~L~~~G~~v~----~vnp~ 49 (145)
T 2duw_A 4 NDIAGILTS---TRTIALVGASDKP-----------DRPSY-----------RVMKYLLDQGYHVI----PVSPK 49 (145)
T ss_dssp CSHHHHHHH---CCCEEEESCCSCT-----------TSHHH-----------HHHHHHHHHTCCEE----EECSS
T ss_pred HHHHHHHhC---CCEEEEECcCCCC-----------CChHH-----------HHHHHHHHCCCEEE----EeCCc
Confidence 456777743 3579999764332 21111 34566788999766 66554
No 121
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=26.63 E-value=28 Score=32.69 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 45567889999988 88876
No 122
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.57 E-value=1.1e+02 Score=31.55 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=19.0
Q ss_pred CCCCeEEEEeCCCchHHHHHHhh-cCCCcEEEEecCCC
Q 005444 290 QGFPDFIIGNYSDGNLVASLLAY-KMGITQCTIAHALE 326 (696)
Q Consensus 290 ~~~pDvIh~h~~~~~l~a~lla~-~~gip~v~t~H~l~ 326 (696)
..+||+|++-.+.--+-..++.. +.| |+.+|..-
T Consensus 78 ~~~~Dliv~~~~~~ilp~~il~~~~~g---~iNiHpSl 112 (314)
T 3tqq_A 78 AMNADVMVVVAYGLILPKKALNAFRLG---CVNVHASL 112 (314)
T ss_dssp TTCCSEEEEESCCSCCCHHHHTSSTTC---EEEEESSC
T ss_pred hcCCCEEEEcCcccccCHHHHhhCcCC---EEEecCcc
Confidence 44999999766543233333332 222 66788753
No 123
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=26.49 E-value=3.1e+02 Score=23.63 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=46.5
Q ss_pred hhHHHHHHHc---cccEEEeCC-CCCCCcHHHHHHHH---cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHH
Q 005444 540 NGELYRYIAD---TKGAFVQPA-FYEAFGLTVVEAMT---CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAE 608 (696)
Q Consensus 540 ~~el~~~la~---aadvfV~PS-~~E~fGltvlEAMa---~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~ 608 (696)
..+....+.. .-|++++-. ..+.-|+.+++.+. ..+|+|.. ..... .+.+..|..+|+..|.+.+++.+
T Consensus 70 ~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~ 149 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQ 149 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 3445555443 136666533 23445666666553 46788774 33322 34456788999999999999999
Q ss_pred HHHHHH
Q 005444 609 LMADFF 614 (696)
Q Consensus 609 ~I~~~l 614 (696)
+|..++
T Consensus 150 ~i~~~l 155 (157)
T 3hzh_A 150 RVMSVF 155 (157)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 986654
No 124
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.33 E-value=2.7e+02 Score=22.89 Aligned_cols=76 Identities=5% Similarity=0.082 Sum_probs=49.3
Q ss_pred hhHHHHHHHc-cccEEEeCC-CCCCCcHHHHHHHHc-----CCcEEEc-CCCC--cchhhccCCeEEEECCCCHHHHHHH
Q 005444 540 NGELYRYIAD-TKGAFVQPA-FYEAFGLTVVEAMTC-----GLPTFAT-CHGG--PAEIIEHGASGFHIDPYHPDQAAEL 609 (696)
Q Consensus 540 ~~el~~~la~-aadvfV~PS-~~E~fGltvlEAMa~-----GlPVvat-~~gG--~~EiI~dg~~G~l~~p~d~e~la~~ 609 (696)
..+....+.. ..|+++.=. ..+.-|+.+++.+.. .+|+|.. .... ..+....|..+|+..|.+.+++.++
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQ 115 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHH
Confidence 3455555532 357766643 345567777777654 6788774 3221 2445567888999999999999999
Q ss_pred HHHHHH
Q 005444 610 MADFFG 615 (696)
Q Consensus 610 I~~~l~ 615 (696)
|..++.
T Consensus 116 i~~~l~ 121 (133)
T 3nhm_A 116 LHALLA 121 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988773
No 125
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.03 E-value=2.9e+02 Score=23.07 Aligned_cols=111 Identities=5% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHH------ccccEEEeCC-C
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIA------DTKGAFVQPA-F 559 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la------~aadvfV~PS-~ 559 (696)
...+++||.+... ....+..+.++.+....|.... +..+....+. ...|++++=. .
T Consensus 8 ~~~~iLivdd~~~-----------~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l 70 (146)
T 3ilh_A 8 KIDSVLLIDDDDI-----------VNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINM 70 (146)
T ss_dssp CEEEEEEECSCHH-----------HHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSC
T ss_pred ccceEEEEeCCHH-----------HHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCC
Confidence 3467888876543 2445666666554322343332 3445556654 2357777643 3
Q ss_pred CCCCcHHHHHHHHc-------CCcEEEc-CCCCc---chhhccC-CeEEEECCCCHHHHHHHHHHHH
Q 005444 560 YEAFGLTVVEAMTC-------GLPTFAT-CHGGP---AEIIEHG-ASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 560 ~E~fGltvlEAMa~-------GlPVvat-~~gG~---~EiI~dg-~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+.-|+.+++.+.. .+|+|.. ..... .+....| ..+|+..|-+.+++.++|...+
T Consensus 71 ~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 35567777777654 6777664 33332 2334556 8899999999999999997765
No 126
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=25.52 E-value=53 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=23.0
Q ss_pred ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHc--CCCcc
Q 005444 162 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQ--GLDIS 216 (696)
Q Consensus 162 ~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~--G~eV~ 216 (696)
|+|||++|..|--| ..++... +|.+.+.+.+.++ |++|+
T Consensus 3 mM~kiLiI~gSpr~---------~~~S~s~-------~l~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKANNRP---------AEQAVSV-------KLYEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECCCSC---------TTTCHHH-------HHHHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeCCCC---------CCCCHHH-------HHHHHHHHHHHHhCCCCeEE
Confidence 67899999754221 1344333 3334556677777 88887
No 127
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=25.06 E-value=67 Score=33.01 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=14.4
Q ss_pred HHHHHHHHc-CCCccceeEEEeCCC
Q 005444 203 EMLLRIKRQ-GLDISPKILIVTRLI 226 (696)
Q Consensus 203 ~L~~~L~~~-G~eV~~~ilV~T~~~ 226 (696)
.+++.|.++ ||+|. ++++..
T Consensus 39 ~l~~~L~~~~g~~V~----~~~r~~ 59 (372)
T 3slg_A 39 HLSKRILETTDWEVF----GMDMQT 59 (372)
T ss_dssp HHHHHHHHHSSCEEE----EEESCC
T ss_pred HHHHHHHhCCCCEEE----EEeCCh
Confidence 445567777 99998 887763
No 128
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=25.02 E-value=31 Score=32.55 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 45567888999988 88776
No 129
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=24.66 E-value=3e+02 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
.+++.|.+.|++|. .+.+.
T Consensus 32 ~~~~~L~~~G~~V~----~vnp~ 50 (138)
T 1y81_A 32 IILKDLLSKGFEVL----PVNPN 50 (138)
T ss_dssp HHHHHHHHTTCEEE----EECTT
T ss_pred HHHHHHHHCCCEEE----EeCCC
Confidence 45566788999765 66544
No 130
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=24.59 E-value=3.8e+02 Score=23.97 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CCCCeEEEEeCCCchHHHHHHhhcCCCcEEEEe
Q 005444 290 QGFPDFIIGNYSDGNLVASLLAYKMGITQCTIA 322 (696)
Q Consensus 290 ~~~pDvIh~h~~~~~l~a~lla~~~gip~v~t~ 322 (696)
..++-+|+++ |.|+.+|..++.+........+
T Consensus 60 ~~~~i~l~G~-SmGG~~a~~~a~~~~~~~~~~~ 91 (202)
T 4fle_A 60 AGQSIGIVGS-SLGGYFATWLSQRFSIPAVVVN 91 (202)
T ss_dssp TTSCEEEEEE-THHHHHHHHHHHHTTCCEEEES
T ss_pred CCCcEEEEEE-ChhhHHHHHHHHHhcccchhee
Confidence 4455566666 6777888888877776655443
No 131
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.57 E-value=64 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.8
Q ss_pred CCCCCCCchhHHHHhhhcCC
Q 005444 104 KLPPDTPFSQFEYVLQGMGF 123 (696)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~ 123 (696)
..+|++-|..--..|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 46788888877779999999
No 132
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=24.53 E-value=3e+02 Score=22.77 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=68.6
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHcc--ccEEEeCC-CCCCCc
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADT--KGAFVQPA-FYEAFG 564 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~a--advfV~PS-~~E~fG 564 (696)
..+++|+.+.+. ....+....++.|. .|.... +..+....+... .|++++=. ..+.-|
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g 67 (136)
T 3hdv_A 7 RPLVLVVDDNAV-----------NREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESG 67 (136)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCH
T ss_pred CCeEEEECCCHH-----------HHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCH
Confidence 467888876543 35567777777654 344432 234555555432 46666533 345567
Q ss_pred HHHHHHHHc----CCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 565 LTVVEAMTC----GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 565 ltvlEAMa~----GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++..+|.++.
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 888887754 4677774 3333 234456688999999999999999997765
No 133
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.38 E-value=2.9e+02 Score=22.54 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=67.1
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeC-CCCCCCcHH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQP-AFYEAFGLT 566 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~P-S~~E~fGlt 566 (696)
.+++|+.+... ..+.+....++.|. .|.... +..+....+.. ..|+++.= ...+.-|+.
T Consensus 4 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 64 (127)
T 3i42_A 4 QQALIVEDYQA-----------AAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLA 64 (127)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHH
T ss_pred ceEEEEcCCHH-----------HHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 56777776543 35567777777654 344432 34455555542 24776653 234556777
Q ss_pred HHHHHH-----cCCcEEEc-CCCCc--chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 567 VVEAMT-----CGLPTFAT-CHGGP--AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 567 vlEAMa-----~GlPVvat-~~gG~--~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+++.+. ..+|+|.. ..... .+.+..|..+|+..|.+.+++.+++....
T Consensus 65 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 65 LVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 877765 34787763 32222 44556678999999999999999996543
No 134
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.27 E-value=2.8e+02 Score=22.34 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=65.5
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CC-CCCcH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FY-EAFGL 565 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~-E~fGl 565 (696)
.+++|+.+.+. ..+.+....++.|. +|.... +..+....+.. ..|+++.-. .. ..-|.
T Consensus 6 ~~ilivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~ 66 (127)
T 2gkg_A 6 KKILIVESDTA-----------LSATLRSALEGRGF--TVDETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGY 66 (127)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHHTC--EEEEEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHH
T ss_pred CeEEEEeCCHH-----------HHHHHHHHHHhcCc--eEEEec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHH
Confidence 46777776543 34556666666554 344332 23445554432 257766533 23 44577
Q ss_pred HHHHHHH-----cCCcEEEcCCCCc----chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMT-----CGLPTFATCHGGP----AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa-----~GlPVvat~~gG~----~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+. ..+|+|.. .... .+....|..+++..|.+.+++...|..++
T Consensus 67 ~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 67 LICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp HHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 7777774 46888887 3322 23345678899999999999999997665
No 135
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=24.03 E-value=45 Score=33.83 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=24.4
Q ss_pred CceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005444 161 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 216 (696)
Q Consensus 161 p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~ 216 (696)
.++|||++|+- .|..+|....+. +.+++.+.+.|++|.
T Consensus 56 ~~~mKILiI~G-----------S~R~~S~T~~La-------~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 56 APPVRILLLYG-----------SLRARSFSRLAV-------EEAARLLQFFGAETR 93 (279)
T ss_dssp CSCCEEEEEES-----------CCSSSCHHHHHH-------HHHHHHHHHTTCEEE
T ss_pred CCCCEEEEEEe-----------CCCCCCHHHHHH-------HHHHHHHhhCCCEEE
Confidence 45689999973 344456544333 345666778899887
No 136
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=23.99 E-value=3e+02 Score=28.22 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCccceeEEEeC
Q 005444 203 EMLLRIKRQGLDISPKILIVTR 224 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~ 224 (696)
++++++++.|++|. ++..
T Consensus 25 ~~~~a~~~~G~~v~----~~~~ 42 (391)
T 1kjq_A 25 EVAIECQRLGVEVI----AVDR 42 (391)
T ss_dssp HHHHHHHTTTCEEE----EEES
T ss_pred HHHHHHHHcCCEEE----EEEC
Confidence 56777899999886 6544
No 137
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.92 E-value=2.6e+02 Score=25.15 Aligned_cols=108 Identities=9% Similarity=0.071 Sum_probs=67.9
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++||.+.+. ....+..+.++.|. .|.... +..+....+.. ..|++++=. ..+.-|+
T Consensus 7 ~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~ 67 (184)
T 3rqi_A 7 DKNFLVIDDNEV-----------FAGTLARGLERRGY--AVRQAH------NKDEALKLAGAEKFEFITVXLHLGNDSGL 67 (184)
T ss_dssp CCEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHTTSCCSEEEECSEETTEESH
T ss_pred CCeEEEEcCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHhhCCCCEEEEeccCCCccHH
Confidence 357788876543 34566666766653 343332 34455666543 247766532 2245577
Q ss_pred HHHHHHH---cCCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMT---CGLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa---~GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+. ..+|||. |..... .+.+..|..||+..|.+.+++..+|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 68 SLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp HHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 7777664 4678877 444433 34456788999999999999999986554
No 138
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.73 E-value=3.1e+02 Score=22.68 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEE-eccccccCChhHHHHHHHc-cccEEEeCCCC--CC
Q 005444 487 ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRW-IAAQTNRARNGELYRYIAD-TKGAFVQPAFY--EA 562 (696)
Q Consensus 487 ~~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~f-lG~~~~~v~~~el~~~la~-aadvfV~PS~~--E~ 562 (696)
...+++|+.+... ..+.+....++.|. .|.. .. +..+....+.. ..|++++-... +.
T Consensus 8 ~~~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~ 68 (140)
T 3cg0_A 8 DLPGVLIVEDGRL-----------AAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGAL 68 (140)
T ss_dssp CCCEEEEECCBHH-----------HHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSS
T ss_pred CCceEEEEECCHH-----------HHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCC
Confidence 3467888877643 34556666666554 3432 22 23455555442 35777764332 34
Q ss_pred CcHHHHHHHH--cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 563 FGLTVVEAMT--CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 563 fGltvlEAMa--~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
-|+.+++.+. ..+|+|.- ..... .+.+..|..+++..|.+.+++...|..++
T Consensus 69 ~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 69 DGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp CHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 5666666554 57888874 43332 24456788999999999999999997766
No 139
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=23.13 E-value=3.7e+02 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=25.7
Q ss_pred eEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCCCCC
Q 005444 164 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPD 228 (696)
Q Consensus 164 ~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~~~~ 228 (696)
|||++-...|+.. ..+. .|++.|++.| +|. |+.+....
T Consensus 1 M~ILlTNDDGi~A--------------pGi~--------aL~~aL~~~g-~V~----VVAP~~~q 38 (280)
T 1l5x_A 1 MKILVTNDDGVHS--------------PGLR--------LLYQFALSLG-DVD----VVAPESPK 38 (280)
T ss_dssp CEEEEECSSCTTC--------------HHHH--------HHHHHHGGGS-EEE----EEEESSCT
T ss_pred CeEEEEcCCCCCc--------------HhHH--------HHHHHHHhCC-CEE----EEecCCCC
Confidence 6899998888733 2244 4455677778 787 88877543
No 140
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=23.02 E-value=64 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHc-CCCccceeEEEeCC
Q 005444 195 DQVRALENEMLLRIKRQ-GLDISPKILIVTRL 225 (696)
Q Consensus 195 ~~~raL~~~L~~~L~~~-G~eV~~~ilV~T~~ 225 (696)
|.+.+++..|.+.|.+. |++| ++||.
T Consensus 28 ~~~l~ia~~l~~~L~~~~G~~V-----~ltR~ 54 (179)
T 1jwq_A 28 TFNLAMALKVESILKQNPKLEV-----VLTRS 54 (179)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEE-----EESCS
T ss_pred HHHHHHHHHHHHHHHhCCCCEE-----EEeCC
Confidence 44455555788889999 9988 67776
No 141
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.66 E-value=61 Score=21.68 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=19.5
Q ss_pred cccCCcHHHHHHHHHHHHHhhcC
Q 005444 125 KGWGDTAEHVLEMMHLLLDILQA 147 (696)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~ 147 (696)
+.-|...+.+.|.+.+|+.+|++
T Consensus 10 kalgqdtekmeeqldllsaildp 32 (40)
T 4h62_K 10 KALGQDTEKMEEQLDLLSAILDP 32 (40)
T ss_pred HhhcccHHHHHHHHHHHHHHcCc
Confidence 34688899999999999999864
No 142
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.80 E-value=33 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCccceeEEEeCCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRLI 226 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~~ 226 (696)
.+++.|.++|++|. ++++..
T Consensus 19 ~l~~~L~~~g~~V~----~~~r~~ 38 (227)
T 3dhn_A 19 ALLNEALNRGFEVT----AVVRHP 38 (227)
T ss_dssp HHHHHHHTTTCEEE----EECSCG
T ss_pred HHHHHHHHCCCEEE----EEEcCc
Confidence 45567889999887 887763
No 143
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.71 E-value=88 Score=30.91 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=27.4
Q ss_pred hHHHHhcCCC-ceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005444 152 TLEKFLGRLP-MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDIS 216 (696)
Q Consensus 152 ~~~~~~~~~p-~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~ 216 (696)
.++.|-...+ ++|||++|+-+ |..+|....+. +.+++.+.+.|++|.
T Consensus 22 ~~~~~~~~~~~~~mkIliI~GS-----------~r~~s~t~~La-------~~~~~~l~~~g~eve 69 (247)
T 2q62_A 22 DSASLRPAFSTHRPRILILYGS-----------LRTVSYSRLLA-------EEARRLLEFFGAEVK 69 (247)
T ss_dssp CGGGGCCCCCCSCCEEEEEECC-----------CCSSCHHHHHH-------HHHHHHHHHTTCEEE
T ss_pred ChhhhhhhccCCCCeEEEEEcc-----------CCCCCHHHHHH-------HHHHHHHhhCCCEEE
Confidence 3444434444 35899999733 34455443333 345666778899887
No 144
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.68 E-value=4e+02 Score=24.96 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCCC-CCCCcHHHHHHHHcCCcEEEcCCCCcchhhccCC
Q 005444 515 MHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAF-YEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGA 593 (696)
Q Consensus 515 l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS~-~E~fGltvlEAMa~GlPVvat~~gG~~EiI~dg~ 593 (696)
|+.+...-+..++|-++|+.+-......+..++. .++-+.+-. .|..--.+.++..-|.=+|.-+.-...-.-+-|-
T Consensus 84 l~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~--~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl 161 (196)
T 2q5c_A 84 MRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLG--VKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGL 161 (196)
T ss_dssp HHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHT--CEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhC--CceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCC
Confidence 4444333334568999998765444455556554 455444322 2333457889999999888875544433335578
Q ss_pred eEEEECCCCHHHHHHHHHHHH
Q 005444 594 SGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 594 ~G~l~~p~d~e~la~~I~~~l 614 (696)
+++++.+ +.+++.+++.++.
T Consensus 162 ~~vli~s-g~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 162 YGETINS-GEESLRRAIEEAL 181 (196)
T ss_dssp EEEECCC-CHHHHHHHHHHHH
T ss_pred cEEEEec-CHHHHHHHHHHHH
Confidence 8898875 5788888887665
No 145
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=21.67 E-value=2.4e+02 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=26.4
Q ss_pred chHHHHhcCCCceeEEEEEccccccCCcccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCccceeEEEeCC
Q 005444 151 STLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 151 ~~~~~~~~~~p~~~rI~iis~h~~~~~~~~lG~p~tGG~~vyv~~~~raL~~~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
..++.|+.+ +.+|++|....-|+ -... .+++.|.+.|++|. -+++.
T Consensus 4 ~~l~~ll~~---p~~vaVvGas~~~g-----------~~G~-----------~~~~~l~~~G~~v~----~vnp~ 49 (140)
T 1iuk_A 4 QELRAYLSQ---AKTIAVLGAHKDPS-----------RPAH-----------YVPRYLREQGYRVL----PVNPR 49 (140)
T ss_dssp HHHHHHHHH---CCEEEEETCCSSTT-----------SHHH-----------HHHHHHHHTTCEEE----EECGG
T ss_pred HHHHHHHcC---CCEEEEECCCCCCC-----------ChHH-----------HHHHHHHHCCCEEE----EeCCC
Confidence 456666622 35899997654432 1111 34556889999755 55544
No 146
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=21.64 E-value=4.2e+02 Score=24.23 Aligned_cols=107 Identities=11% Similarity=0.148 Sum_probs=64.8
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEEEeCC-CCCCCcHHH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPA-FYEAFGLTV 567 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvfV~PS-~~E~fGltv 567 (696)
.+++|+.+.+. ..+.+....+..+ .|.... +..+....+. ..|++++=. ..+.-|+.+
T Consensus 3 ~~ilivdd~~~-----------~~~~l~~~L~~~~---~v~~~~------~~~~al~~~~-~~dlvllD~~lp~~~g~~~ 61 (220)
T 1p2f_A 3 WKIAVVDDDKN-----------ILKKVSEKLQQLG---RVKTFL------TGEDFLNDEE-AFHVVVLDVMLPDYSGYEI 61 (220)
T ss_dssp EEEEEECSCHH-----------HHHHHHHHHTTTE---EEEEES------SHHHHHHCCS-CCSEEEEESBCSSSBHHHH
T ss_pred ceEEEEeCCHH-----------HHHHHHHHHHhCC---CEEEEC------CHHHHHHhcC-CCCEEEEeCCCCCCCHHHH
Confidence 35677766543 2445555555443 344332 2334444443 467777532 234457777
Q ss_pred HHHHH---cCCcEEEc-CCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHHHh
Q 005444 568 VEAMT---CGLPTFAT-CHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFFGK 616 (696)
Q Consensus 568 lEAMa---~GlPVvat-~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l~~ 616 (696)
++.+. ..+|+|.- ..... .+.+..|..||+..|.+.+++..+|..++..
T Consensus 62 ~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 62 CRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 76664 46888774 43332 3344568899999999999999999887753
No 147
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=21.61 E-value=3.9e+02 Score=25.24 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHccccEE-EeCCCCCCC-cHHHHHHHH--c-CCcEEEc---CCCCc
Q 005444 514 KMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAF-VQPAFYEAF-GLTVVEAMT--C-GLPTFAT---CHGGP 585 (696)
Q Consensus 514 ~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~aadvf-V~PS~~E~f-GltvlEAMa--~-GlPVvat---~~gG~ 585 (696)
.+.+.+++++.. .++| -.+..|+.+.....+|++ ++| .+.. |+..+.++. . .+|++++ +....
T Consensus 95 ~v~~~~~~~g~~---~i~G----~~t~~e~~~A~~~Gad~v~~fp--a~~~gG~~~lk~l~~~~~~ipvvaiGGI~~~n~ 165 (207)
T 2yw3_A 95 EVAALAQARGVP---YLPG----VLTPTEVERALALGLSALKFFP--AEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHL 165 (207)
T ss_dssp HHHHHHHHHTCC---EEEE----ECSHHHHHHHHHTTCCEEEETT--TTTTTHHHHHHHHHHHCTTCEEEEBSSCCGGGH
T ss_pred HHHHHHHHhCCC---EEec----CCCHHHHHHHHHCCCCEEEEec--CccccCHHHHHHHHhhCCCCcEEEeCCCCHHHH
Confidence 344555666643 3456 234667777777667865 455 3666 777776665 3 7899987 23344
Q ss_pred chhhccCCeEEEEC----CCCHHHHHHHHHHHH
Q 005444 586 AEIIEHGASGFHID----PYHPDQAAELMADFF 614 (696)
Q Consensus 586 ~EiI~dg~~G~l~~----p~d~e~la~~I~~~l 614 (696)
.+++..|..|+.+- +.|++++.+...++.
T Consensus 166 ~~~l~aGa~~vavgSai~~~d~~~i~~~a~~~~ 198 (207)
T 2yw3_A 166 PHYAALPNLLAVGGSWLLQGNLEAVRAKVRAAK 198 (207)
T ss_dssp HHHHTCSSBSCEEESGGGSSCHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEehhhhCCCHHHHHHHHHHHH
Confidence 66666565554331 156666665555544
No 148
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=21.35 E-value=46 Score=33.71 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=14.9
Q ss_pred HHHHHHHHcCCCccceeEEEeCCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRLI 226 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~~ 226 (696)
.+++.|.++||+|. ++++..
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~~ 47 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRPS 47 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECTT
T ss_pred HHHHHHHHCCCEEE----EEecCh
Confidence 45567788999987 887753
No 149
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=21.05 E-value=1.2e+02 Score=29.71 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
.++++|+++|++|. ++.+.
T Consensus 42 aia~~l~~~G~~V~----~~~r~ 60 (260)
T 3gem_A 42 HCALRLLEHGHRVI----ISYRT 60 (260)
T ss_dssp HHHHHHHHTTCCEE----EEESS
T ss_pred HHHHHHHHCCCEEE----EEeCC
Confidence 56678899999987 76654
No 150
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=20.70 E-value=50 Score=32.91 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCccceeEEEeCCCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRLIP 227 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~~~ 227 (696)
.+++.|.++||+|. ++++...
T Consensus 22 ~l~~~L~~~g~~V~----~~~r~~~ 42 (321)
T 3vps_A 22 HLARALVASGEEVT----VLDDLRV 42 (321)
T ss_dssp HHHHHHHHTTCCEE----EECCCSS
T ss_pred HHHHHHHHCCCEEE----EEecCCc
Confidence 45567888999998 8877643
No 151
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=20.63 E-value=43 Score=33.79 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCccceeEEEeCC
Q 005444 204 MLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 204 L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
++..|++.|++|. ++++.
T Consensus 17 ~a~~L~~~g~~V~----~~~r~ 34 (294)
T 3g17_A 17 IAYELQQSLPHTT----LIGRH 34 (294)
T ss_dssp HHHHHHHHCTTCE----EEESS
T ss_pred HHHHHHHCCCeEE----EEEec
Confidence 4556788999998 88776
No 152
>3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP}
Probab=20.57 E-value=4.2e+02 Score=26.32 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCCchHHHHHHhhcC
Q 005444 275 ETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKM 314 (696)
Q Consensus 275 ~~f~~~~~~~i~~~~~~~pDvIh~h~~~~~l~a~lla~~~ 314 (696)
..++.++...+.......|-++.+| +.++.++..++..+
T Consensus 131 ~~~~~~~~~~l~~~~~~~~~~lvGh-S~Gg~vA~~~A~~~ 169 (319)
T 3lcr_A 131 TVLVRSLADVVQAEVADGEFALAGH-SSGGVVAYEVAREL 169 (319)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEE-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEE-CHHHHHHHHHHHHH
Confidence 4455555555555434456666677 45666666666554
No 153
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=20.56 E-value=56 Score=32.82 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCccceeEEEeCCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRLI 226 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~~ 226 (696)
.++++|.++|++|. +++|..
T Consensus 26 ~l~~~L~~~g~~V~----~l~R~~ 45 (318)
T 2r6j_A 26 HMVKGSLKLGHPTY----VFTRPN 45 (318)
T ss_dssp HHHHHHHHTTCCEE----EEECTT
T ss_pred HHHHHHHHCCCcEE----EEECCC
Confidence 34466788999998 888764
No 154
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=20.50 E-value=49 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
-++..|++.|++|+ ++++.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (312)
T 3hn2_A 16 YYGALLQRSGEDVH----FLLRR 34 (312)
T ss_dssp HHHHHHHHTSCCEE----EECST
T ss_pred HHHHHHHHCCCeEE----EEEcC
Confidence 34566788999998 88764
No 155
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=20.49 E-value=41 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCccceeEEEeCC
Q 005444 203 EMLLRIKRQGLDISPKILIVTRL 225 (696)
Q Consensus 203 ~L~~~L~~~G~eV~~~ilV~T~~ 225 (696)
-++..|++.|++|+ ++++.
T Consensus 16 ~~a~~L~~~g~~V~----~~~r~ 34 (320)
T 3i83_A 16 FYGALLAKTGHCVS----VVSRS 34 (320)
T ss_dssp HHHHHHHHTTCEEE----EECST
T ss_pred HHHHHHHhCCCeEE----EEeCC
Confidence 35566788999998 88775
No 156
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.46 E-value=3.7e+02 Score=22.24 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred CeEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcH
Q 005444 488 LVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGL 565 (696)
Q Consensus 488 ~~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGl 565 (696)
..+++|+.+... ....+....++.+. .|.... +..+....+.. ..|++++-. ..+.-|+
T Consensus 7 ~~~ilivdd~~~-----------~~~~l~~~L~~~~~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~ 67 (137)
T 3hdg_A 7 ALKILIVEDDTD-----------AREWLSTIISNHFP--EVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGL 67 (137)
T ss_dssp CCCEEEECSCHH-----------HHHHHHHHHHTTCS--CEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHH
T ss_pred ccEEEEEeCCHH-----------HHHHHHHHHHhcCc--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHH
Confidence 467888876543 34556666665332 354443 23455555442 357777643 3445577
Q ss_pred HHHHHHHc---CCcEEEc-CCCC---cchhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 566 TVVEAMTC---GLPTFAT-CHGG---PAEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 566 tvlEAMa~---GlPVvat-~~gG---~~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 68 EMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 77766653 6788774 3332 234456788999999999999999997776
No 157
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.06 E-value=3.8e+02 Score=22.32 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=66.7
Q ss_pred eEEEEEeCccCCCCCcchHHHHHHHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCC-CCCCCcHH
Q 005444 489 VNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPA-FYEAFGLT 566 (696)
Q Consensus 489 ~~LvIvG~g~~~~~~~d~e~~~~~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS-~~E~fGlt 566 (696)
.+++|+.+.+. ....+..+.++.|. .|.... +..+....+.. ..|++++=. ..+.-|+.
T Consensus 5 ~~iLivdd~~~-----------~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~ 65 (136)
T 3t6k_A 5 HTLLIVDDDDT-----------VAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYT 65 (136)
T ss_dssp CEEEEECSCHH-----------HHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH
T ss_pred CEEEEEeCCHH-----------HHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 56777766543 34556666666553 344322 23455555542 347777533 23455777
Q ss_pred HHHHHHc-----CCcEEE-cCCCCc---chhhccCCeEEEECCCCHHHHHHHHHHHH
Q 005444 567 VVEAMTC-----GLPTFA-TCHGGP---AEIIEHGASGFHIDPYHPDQAAELMADFF 614 (696)
Q Consensus 567 vlEAMa~-----GlPVva-t~~gG~---~EiI~dg~~G~l~~p~d~e~la~~I~~~l 614 (696)
+++.+.. .+|+|. |..+.. .+.+..|..+|+..|.+.+++..+|..++
T Consensus 66 ~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 66 LCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp HHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 8777643 578876 444433 23445688999999999999999998776
No 158
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=20.01 E-value=3.2e+02 Score=25.22 Aligned_cols=94 Identities=7% Similarity=0.038 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccccCChhHHHHHHHc-cccEEEeCCCCCCCcHHHHHHHHc---CCcEEE-cCCCCc-
Q 005444 512 IEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIAD-TKGAFVQPAFYEAFGLTVVEAMTC---GLPTFA-TCHGGP- 585 (696)
Q Consensus 512 ~~~l~~li~~~~L~~~V~flG~~~~~v~~~el~~~la~-aadvfV~PS~~E~fGltvlEAMa~---GlPVva-t~~gG~- 585 (696)
...+....+..+. .|.... +..+....+.. ..|++++| +.-|+.+++.+.. .+|+|. |.....
T Consensus 13 ~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~ 81 (223)
T 2hqr_A 13 GGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSE 81 (223)
T ss_dssp HHHHHHHHGGGTC--CEEEES------SHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSCCHH
T ss_pred HHHHHHHHHHCCc--EEEEEC------CHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCCCHH
Confidence 4556666666554 344332 24455555543 25888844 3456777666643 778877 444332
Q ss_pred --chhhccCCeEEEECCC-CHHHHHHHHHHHHHh
Q 005444 586 --AEIIEHGASGFHIDPY-HPDQAAELMADFFGK 616 (696)
Q Consensus 586 --~EiI~dg~~G~l~~p~-d~e~la~~I~~~l~~ 616 (696)
.+.+..|..|++..|. +.+++..+|..++..
T Consensus 82 ~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 82 EEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp HHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 3344568899999999 999999999887643
Done!