BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005445
         (696 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 514

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 282/479 (58%), Gaps = 52/479 (10%)

Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+           
Sbjct: 21  GITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80

Query: 60  --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
                                     VH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 81  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139

Query: 94  MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIR 199

Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
           SLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259

Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
           YPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319

Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
           YP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377

Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
             SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTM 436

Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVSMYTLRKPGMQISVAHVTRRNL 442
           + +GL  K+     E    D+   ++ F     +QA++   + +  M+I+  HV R+ L
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINS-KMFEVDMKIAAMHVKRKQL 493


>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
           3'- Datp And Magnesium Chloride
          Length = 514

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/478 (42%), Positives = 278/478 (58%), Gaps = 50/478 (10%)

Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+           
Sbjct: 21  GITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80

Query: 60  --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
                                     VH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 81  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139

Query: 94  MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRXIR 199

Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
           SLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259

Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
           YPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319

Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
           YP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377

Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
             SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTM 436

Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRNL 442
           + +GL  K+     E    D+   ++ F   V    +     +  M+I+  HV R+ L
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493


>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 513

 Score =  345 bits (885), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 202/478 (42%), Positives = 273/478 (57%), Gaps = 50/478 (10%)

Query: 10  GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
           GIT PISLA P + D + T+KL + L+   ++E +EE   R  +LG+L+           
Sbjct: 21  GITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80

Query: 60  --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
                                     VH  GADID LCV PRH  R  DFF   +  L  
Sbjct: 81  ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139

Query: 94  MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
             EV +L  V +A VPV+K  F G+ ID+L+ARL+L  IPEDLD+  DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 199

Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
           SLNGCRVTD+IL LVP I NFR TLR ++ WAKR  +YSN+ GFLGG++WA LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAXLVARTCQL 259

Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
           YPNA+ S LV +FF V+++W WPNPVLL   EE +L L VWDPR NP D+YHL PIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLXPIITPA 319

Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
           YP  NS+YNVS ST  + ++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRXVXVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377

Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
             SA        W G VES++R L   +E++ +  L     Q  P P +  DK +     
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTX 436

Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQ----ISVAHVTRRNL 442
           + +GL  K+     E    D+   ++ F   V    +     +    I+  HV R+ L
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKXFEVDXKIAAXHVKRKQL 493


>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
           State
 pdb|2O1P|B Chain B, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
           State
          Length = 546

 Score =  320 bits (819), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 238/396 (60%), Gaps = 40/396 (10%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---- 59
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L +    
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 60  --------------------------------VHGPGADIDTLCVGPRHATREEDFFGEL 87
                                           VHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 88  HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 147
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 148 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 207
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 208 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 267
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 268 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 327
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 328 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKIE 362
           K YL I      +D+    W G VES++R L +K+E
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 394


>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed
           Conformation
          Length = 530

 Score =  320 bits (819), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 238/396 (60%), Gaps = 40/396 (10%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---- 59
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L +    
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 60  --------------------------------VHGPGADIDTLCVGPRHATREEDFFGEL 87
                                           VHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 88  HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 147
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 148 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 207
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 208 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 267
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 268 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 327
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 328 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKIE 362
           K YL I      +D+    W G VES++R L +K+E
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 394


>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
 pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
           And 3'-Datp
 pdb|3C66|A Chain A, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
           80-105
 pdb|3C66|B Chain B, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
           80-105
          Length = 537

 Score =  319 bits (818), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/396 (41%), Positives = 238/396 (60%), Gaps = 40/396 (10%)

Query: 4   SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---- 59
           S+ +  GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L +    
Sbjct: 2   SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61

Query: 60  --------------------------------VHGPGADIDTLCVGPRHATREEDFFGEL 87
                                           VHGPG+DIDTL V P+H TRE DFF   
Sbjct: 62  FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120

Query: 88  HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 147
             +L E  E+ E+ PVPDA VP++K KFSG+SIDL+ ARL    +P  L +S  ++L+N 
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180

Query: 148 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 207
           DE+ +R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240

Query: 208 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 267
           ARICQLYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300

Query: 268 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 327
           P+ITPAYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358

Query: 328 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKIE 362
           K YL I      +D+    W G VES++R L +K+E
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 394


>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
           Oligo(A)
          Length = 525

 Score =  315 bits (807), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 163/391 (41%), Positives = 234/391 (59%), Gaps = 40/391 (10%)

Query: 9   LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------- 59
            GIT P+S  G T  +      L + L+    +E+++E  +R +VL  L +         
Sbjct: 3   FGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEV 62

Query: 60  ---------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLT 92
                                      VHGPG+DIDTL V P+H TRE DFF     +L 
Sbjct: 63  SKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLR 121

Query: 93  EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTV 152
           E  E+ E+ PVPDA VP++K KFSG+SI L+ ARL    +P  L +S  ++L+N DE+ +
Sbjct: 122 ERKELDEIAPVPDAFVPIIKIKFSGISIALICARLDQPQVPLSLTLSDKNLLRNLDEKDL 181

Query: 153 RSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQ 212
           R+LNG RVTD+IL LVPK   FR  LR ++ WA+RR VY+N+ GF GG+ WA+LVARICQ
Sbjct: 182 RALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ 241

Query: 213 LYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITP 272
           LYPNA  +++++RFF + ++W WP PV+L  IE+G L ++VW+P+   +D+ H MP+ITP
Sbjct: 242 LYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITP 301

Query: 273 AYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLR 332
           AYP M +++N++ ST ++++ EF RG +I   +  N+    W  LFE   FF  YK YL 
Sbjct: 302 AYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLE 359

Query: 333 IDISAENADDLR-NWKGWVESRLRQLTLKIE 362
           I      +D+    W G VES++R L +K+E
Sbjct: 360 ITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 390


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,995,995
Number of Sequences: 62578
Number of extensions: 822701
Number of successful extensions: 1561
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 17
length of query: 696
length of database: 14,973,337
effective HSP length: 106
effective length of query: 590
effective length of database: 8,340,069
effective search space: 4920640710
effective search space used: 4920640710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)