BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005445
(696 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/543 (44%), Positives = 316/543 (58%), Gaps = 67/543 (12%)
Query: 9 LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------- 59
LG+TEPIS A P+ D + +LE L NL+ES EE+ REE+LG+L+Q
Sbjct: 53 LGVTEPISTAPPSSIDFKLSTELENTLISFNLFESPEESRKREEILGKLNQIVREWAKQV 112
Query: 60 ---------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLT 92
VHGPG+DIDTLCVGP+H R DFF +L +L
Sbjct: 113 SLKKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMRS-DFFDDLSDILK 171
Query: 93 EMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNADEQT 151
PE+TE V DA VPV+ FSG+ IDL+YA+L+L IPE+L D+ +S L+N DE++
Sbjct: 172 VHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKS 231
Query: 152 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 211
+ SLNGCRVTDQIL+LVP I NFR LRC++ WA RRG+YSN+ GFLGG++WALL ARIC
Sbjct: 232 ILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTARIC 291
Query: 212 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLMPII 270
QLYPN+ PS ++ RFF+VY W+WP P+LLC I+EG LG +VW+P+R DK HLMPII
Sbjct: 292 QLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPII 348
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP MNS+YNVS STL++M EF RG EI +E E W L E FF Y Y
Sbjct: 349 TPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFY 406
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SKP-- 384
+ ID + N +D R W+GW+ES+LR L +E T M P+P F++ + P
Sbjct: 407 IEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANNPDQ 465
Query: 385 LYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRN 441
+ S+FMGL G + D+ V EF + + +P M I V ++ ++
Sbjct: 466 ICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQ 525
Query: 442 LPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKC 501
LP FV G P P K T +K SS +P A ++K +N D L + K
Sbjct: 526 LPAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNSPKS 572
Query: 502 HAT 504
T
Sbjct: 573 PIT 575
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 283/485 (58%), Gaps = 50/485 (10%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
+ GIT PISLA P + D + T+KL ++ ++E +EE R VLG+L+
Sbjct: 17 KHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWIS 76
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
VH GADID LCV PRH R DFF +
Sbjct: 77 DVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEK 135
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L + L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D +
Sbjct: 136 LKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIR 195
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
+RSLNGCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR
Sbjct: 196 CIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVART 255
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNA S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 256 CQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPII 315
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y
Sbjct: 316 TPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHY 373
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPL 385
+ + SA ++ W G VES++R L +ER+ + L H +P F K
Sbjct: 374 IVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKDNNY 432
Query: 386 YCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRN 441
+F+G+ ++ V E D+ ++ F V + + K GM+I HV ++
Sbjct: 433 VSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQ 491
Query: 442 LPNFV 446
L +++
Sbjct: 492 LHHYL 496
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 284/485 (58%), Gaps = 50/485 (10%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
+ GIT PISLA P + D + T+KL ++ ++E +EE R VLG+L+
Sbjct: 17 KHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWIS 76
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
VH GADID LCV PRH R DFF +
Sbjct: 77 DISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERS-DFFQSFFEK 135
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L + L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D +
Sbjct: 136 LKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIR 195
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
+RSLNGCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR
Sbjct: 196 CIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVART 255
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNA S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 256 CQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPII 315
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y
Sbjct: 316 TPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHY 373
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPL 385
+ + SA ++ W G VES++R L +ER+ + L H +P F K+
Sbjct: 374 IVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKANNY 432
Query: 386 YCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRN 441
+F+G+ ++ V E D+ ++ F V + + K GM+I HV ++
Sbjct: 433 VSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQ 491
Query: 442 LPNFV 446
L +++
Sbjct: 492 LHHYL 496
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/493 (42%), Positives = 287/493 (58%), Gaps = 60/493 (12%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
+ GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+
Sbjct: 18 KHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIR 77
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
VH GADID LCV PRH R DFF +
Sbjct: 78 EISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDK 136
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
+RSLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 316
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHY 374
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPL 385
+ + SA W G VES++R L +E++ + L Q P P + DK +
Sbjct: 375 IVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-F 433
Query: 386 YCSYFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVT 438
+ +GL K+ E D+ ++ F +QA++ M+ + M+I+ HV
Sbjct: 434 RTMWVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEV---DMKIAAMHVK 489
Query: 439 RRN----LPNFVF 447
R+ LPN V
Sbjct: 490 RKQLHQLLPNHVL 502
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 283/481 (58%), Gaps = 56/481 (11%)
Query: 10 GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+
Sbjct: 21 GITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80
Query: 60 --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
VH GADID LCV PRH R DFF + L
Sbjct: 81 ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139
Query: 94 MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 199
Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
SLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
YPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
YP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377
Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
SA W G VES++R L +E++ + L Q P P + D+ +
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREE-FRTM 436
Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRN 441
+ +GL K+ E D+ ++ F +QA++ M+ L M+I+ HV R+
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEL---DMKIAAMHVKRKQ 492
Query: 442 L 442
L
Sbjct: 493 L 493
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 283/481 (58%), Gaps = 56/481 (11%)
Query: 10 GITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------- 59
GIT PISLA P + D + T+KL + L+ ++E +EE R +LG+L+
Sbjct: 21 GITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREIS 80
Query: 60 --------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93
VH GADID LCV PRH R DFF + L
Sbjct: 81 ESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKL 139
Query: 94 MPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +R
Sbjct: 140 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 199
Query: 154 SLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL 213
SLNGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQL
Sbjct: 200 SLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQL 259
Query: 214 YPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPA 273
YPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPA
Sbjct: 260 YPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPA 319
Query: 274 YPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRI 333
YP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 320 YPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVL 377
Query: 334 DISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCS 388
SA W G VES++R L +E++ + L Q P P + DK +
Sbjct: 378 LASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTM 436
Query: 389 YFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRN 441
+ +GL K+ E D+ ++ F +QA++ M+ + M+I+ HV R+
Sbjct: 437 WVIGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEV---DMKIAAMHVKRKQ 492
Query: 442 L 442
L
Sbjct: 493 L 493
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 362 bits (929), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 229/598 (38%), Positives = 325/598 (54%), Gaps = 94/598 (15%)
Query: 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ-------- 59
R G++ PISLA P + D + T++L + LR ++E +EE R VL +L+
Sbjct: 19 RYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLNNLVKEWIRE 78
Query: 60 ----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQML 91
VH GADID LCV P H R DFF + L
Sbjct: 79 ISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKL 137
Query: 92 TEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQT 151
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 138 KLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRC 197
Query: 152 VRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC 211
+RSLNGCRVTD+IL LVP I NFR TLR ++ WAK +YSN+ GFLGG++WA+LVAR C
Sbjct: 198 IRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTC 257
Query: 212 QLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIIT 271
QLYPNAV S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIIT
Sbjct: 258 QLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIIT 317
Query: 272 PAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYL 331
PAYP NS+YNVS ST +M++EF++G I + ++A +W LFE +FF+ YK+Y+
Sbjct: 318 PAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYI 375
Query: 332 RIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-SDKSKP----LY 386
+ SA W G VES++R L +E++ + L H +P F + K P
Sbjct: 376 VLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDMEEFR 434
Query: 387 CSYFMGLQRKQ---GVPVGEGEQFDIR-LTVKEFKQAVS--MYTLRKPGMQISVAHVTRR 440
+ +GL K+ + +DI+ T ++QAV+ M+ + GM+I+ H+ R+
Sbjct: 435 TMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM---GMKITAMHLRRK 491
Query: 441 NLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAK 500
L + L V K + +GR+ TD N + +A
Sbjct: 492 EL---------------------HQLLPHHVLQDKKAHSTEGRRL--TDLNDSSFDLSAG 528
Query: 501 CHATM--PSSSGEFREG----------SPIMSTISSSSINLQ-----FEHMDANELAG 541
C +M PSS+ + G SP ++ +++S N+Q + ++ NE +G
Sbjct: 529 CENSMSVPSSTSTMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSG 586
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 360 bits (923), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 226/598 (37%), Positives = 329/598 (55%), Gaps = 92/598 (15%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
++ GI+ PISLA P D D T+KL + L+ ++E +EE R +L +L+
Sbjct: 18 KQFGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKEWIR 77
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
VH GADID LCV PRH R DFF +
Sbjct: 78 EISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSFYDK 136
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 137 LKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 196
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAK +YSN+ GFLGG++WA+LVAR
Sbjct: 197 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVART 256
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 257 CQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPII 316
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP NS+YNVS ST +M++EF++G I + N+A +W LFE +FF+ YK+Y
Sbjct: 317 TPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHY 374
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPL 385
+ + SA W G VES++R L +E++ + L Q P P + +DK +
Sbjct: 375 IVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETADKEE-F 433
Query: 386 YCSYFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVT 438
+ +GL K+ E D+ ++ F +QA++ M+ + M+I+ H+
Sbjct: 434 RTMWVIGLVLKKP-ENSEILSIDLTYDIQSFTDTVYRQAINSKMFEM---DMKIAAMHLR 489
Query: 439 RRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRN 498
R+ L + + P V L++K + T + R TD ++ + +
Sbjct: 490 RKEL-HQLLPNHV---------------LQKKETHLT----ESVRLTAVTDSSLLLSI-D 528
Query: 499 AKCHATMPSSSGEFREG----------SPIMSTISSSSINLQF-----EHMDANELAG 541
++ T PS +G + G SP ++ +++S N+QF +H++ E +G
Sbjct: 529 SENSMTAPSPTGTMKTGPLTGNPQGRNSPALAVMAASVTNIQFPDVSLQHVNPIESSG 586
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 204/494 (41%), Positives = 281/494 (56%), Gaps = 53/494 (10%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
+ GIT PISLA D D +KL + L+ ++E +E+ R +LG+L+
Sbjct: 2 KTFGITSPISLAAAKDTDCTLMQKLIETLKPYGVFEEEEQLQHR--ILGKLNNLVKEWIR 59
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
VH GADID LCV PRH R DFF +
Sbjct: 60 EISELKHLPQSVIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYDK 118
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 119 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 178
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 179 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 238
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 239 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 298
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK+Y
Sbjct: 299 TPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHY 356
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYF 390
+ + SA W G VES++R L +E++ + L H +P F S+ + F
Sbjct: 357 ILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEF 415
Query: 391 -----MGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRN 441
+GL K+ + E D+ ++ F V + + M+I+ HV R+
Sbjct: 416 RTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQ 474
Query: 442 LPNFVFPGGVRPSR 455
L P V P +
Sbjct: 475 LHQLQ-PSHVSPKK 487
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 176/413 (42%), Positives = 258/413 (62%), Gaps = 41/413 (9%)
Query: 5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLG---RLDQ-- 59
N + G+TEPIS GPT + + L + L++ +ES++ R EVL RL Q
Sbjct: 2 NTKTYGVTEPISTNGPTPKENILNDALIQELKNRGSFESEQATKKRVEVLTLFQRLVQEF 61
Query: 60 -------------------------------VHGPGADIDTLCVGPRHATREEDFFGELH 88
V+GPG+DIDTL V P+H TR+ DFF
Sbjct: 62 VYTVSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFA 120
Query: 89 QMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 148
++ + PE+ E+ VPDA+VP++K +F G+SIDL+ ARL++ +P DL + ++L+N D
Sbjct: 121 DIIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLD 180
Query: 149 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 208
E+ +RSLNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVA
Sbjct: 181 EKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVA 240
Query: 209 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 268
RICQLYPNAV S +V +FF +YT+W WP PVLL +IE+G L ++VW+PR P D+ H MP
Sbjct: 241 RICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMP 300
Query: 269 IITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 328
+ITPAYP M +++N+++ST ++++ E RG I + + + W LFE +FF YK
Sbjct: 301 VITPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKK--TWSDLFEKHSFFYKYK 358
Query: 329 NYL-RIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSD 380
YL + S ++A++ + W G++ES+LRQL LK+E + HP+ DFS+
Sbjct: 359 FYLCVVAASIDSAEEHKKWSGFIESKLRQLVLKLEVAE-GVEIAHPYVKDFSN 410
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 345 bits (884), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 173/392 (44%), Positives = 246/392 (62%), Gaps = 39/392 (9%)
Query: 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------- 59
++ GIT PIS A T+ + L L++ NL+ES E+ R +VL L Q
Sbjct: 4 KQWGITPPISTAPATEQENALNTALINELKNQNLFESPAESEKRVKVLDELQQITTEFVK 63
Query: 60 -----------------------------VHGPGADIDTLCVGPRHATREEDFFGELHQM 90
V+GPG+DIDTL V P+H +R+ +FF +L M
Sbjct: 64 KVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPM 122
Query: 91 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 150
L E EVT+L VPDA+VP++KFKF G+SIDL++ARLS+ +P DL++S +++L+ +E+
Sbjct: 123 LREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEER 182
Query: 151 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210
V SLNG RVTDQIL+LVP F+ LR ++FWA+RR +Y+NV GF GG+ WA++VARI
Sbjct: 183 CVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVARI 242
Query: 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 270
CQLYPNAV S++V++FFR+ QW WP P+LL IE+G L +++W+P+ P DK H MPII
Sbjct: 243 CQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPII 302
Query: 271 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 330
TPAYP M +++N++ ST I++ E R EI + + + W LF+ FF YK+Y
Sbjct: 303 TPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKA--LPWSALFQKHDFFHRYKHY 360
Query: 331 LRIDISAENADDLRNWKGWVESRLRQLTLKIE 362
L I +A+ A+ W G VES+LR L ++E
Sbjct: 361 LTITAAAKTAEAQLKWAGLVESKLRHLVTRLE 392
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 328 bits (842), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 175/364 (48%), Positives = 228/364 (62%), Gaps = 40/364 (10%)
Query: 2 GSSNGQR-LGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ- 59
GS Q+ GIT PISLA P D D T+KL + L+ ++E ++E R LG+L+
Sbjct: 9 GSQQSQKTYGITSPISLATPKDTDCTLTQKLIETLKPYGVFEEEDELQHRILSLGKLNNL 68
Query: 60 -----------------------------------VHGPGADIDTLCVGPRHATREEDFF 84
VH GADID LCV PRH R D F
Sbjct: 69 VKEWIREISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DLF 127
Query: 85 GELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSIL 144
++ L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L
Sbjct: 128 SSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLL 187
Query: 145 QNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWA 204
+N D + +RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA
Sbjct: 188 KNLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWA 247
Query: 205 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 264
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 248 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 307
Query: 265 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 324
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 308 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKA--EWSKLFDAPNFF 365
Query: 325 EAYK 328
+ YK
Sbjct: 366 QKYK 369
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 322 bits (824), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 172/421 (40%), Positives = 247/421 (58%), Gaps = 46/421 (10%)
Query: 5 NGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ----- 59
N Q G+T PIS+A T + L K L+ +ES+ R EVL L
Sbjct: 2 NNQAYGVTPPISVANSTPKENELNDSLIKELKSRGSFESETATKKRVEVLNILQSMTEEF 61
Query: 60 -------------------------------VHGPGADIDTLCVGPRHATREEDFFGELH 88
V+GPG+DIDTL V P+H +R DFF +
Sbjct: 62 VYKVSIKKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRN-DFFEVFY 120
Query: 89 QMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNAD 148
++L E+ E+ PVPDA VP++K +F+G+SIDL++ARL + +P DL + ++L+N D
Sbjct: 121 ELLKGRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNID 180
Query: 149 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 208
E+ +R+LNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVA
Sbjct: 181 EKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVA 240
Query: 209 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMP 268
RICQLYPNAV +++V +FF +Y+QW WP PVLL IE+G L ++VW+PR D+ H MP
Sbjct: 241 RICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMP 300
Query: 269 IITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 328
+ITPAYP M +++N+++ST ++++ EFQRG E+ + N W L E FF YK
Sbjct: 301 VITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDI--NVGKKSWSDLLERHDFFFRYK 358
Query: 329 NYLRIDISAEN--ADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLY 386
YL I + + A+ L+ + G VES+LR L K+E + HP+ F + Y
Sbjct: 359 FYLCIVAATRSTYAEHLK-YSGMVESKLRLLVQKLEL-VEGIELAHPYVKSFENG---YY 413
Query: 387 C 387
C
Sbjct: 414 C 414
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 238/396 (60%), Gaps = 40/396 (10%)
Query: 4 SNGQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---- 59
S+ + GIT P+S G T + L + L+ +E+++E +R +VL L +
Sbjct: 2 SSQKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR 61
Query: 60 --------------------------------VHGPGADIDTLCVGPRHATREEDFFGEL 87
VHGPG+DIDTL V P+H TRE DFF
Sbjct: 62 FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVF 120
Query: 88 HQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNA 147
+L E E+ E+ PVPDA VP++K KFSG+SIDL+ ARL +P L +S ++L+N
Sbjct: 121 DSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNL 180
Query: 148 DEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLV 207
DE+ +R+LNG RVTD+IL LVPK FR LR ++ WA+RR VY+N+ GF GG+ WA+LV
Sbjct: 181 DEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLV 240
Query: 208 ARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLM 267
ARICQLYPNA +++++RFF + ++W WP PV+L IE+G L ++VW+P+ +D+ H M
Sbjct: 241 ARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRM 300
Query: 268 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 327
P+ITPAYP M +++N++ ST ++++ EF RG +I + N+ W LFE FF Y
Sbjct: 301 PVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRY 358
Query: 328 KNYLRIDISAENADDLR-NWKGWVESRLRQLTLKIE 362
K YL I +D+ W G VES++R L +K+E
Sbjct: 359 KFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 394
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 152/261 (58%), Gaps = 16/261 (6%)
Query: 205 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 264
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 265 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 324
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFF 118
Query: 325 EAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFS 379
+ YK+Y+ + SA W G VES++R L +E++ + L Q P P + S
Sbjct: 119 QKYKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSENS 178
Query: 380 DKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVSMYTLRKPGMQISV 434
+K + + +GL K+ + E D+ ++ F +QA++ ++I+
Sbjct: 179 EKEE-FRTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVYRQAINSKMFET-EIKIAA 235
Query: 435 AHVTRRNLPNFVFPGGVRPSR 455
HV R+ L + + P V P +
Sbjct: 236 MHVKRKQL-HQLLPSHVLPKK 255
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 174/345 (50%), Gaps = 18/345 (5%)
Query: 60 VHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVS 119
V+G +DID V TR+ DF+ L+ L P+V EL +P P + + +
Sbjct: 70 VYGNNSDIDACIVSNSTITRD-DFYDGLYAELLNNPDVKELKQIPSKRSPHLSMIYLNIE 128
Query: 120 IDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKI--QNFRTT 177
DL ++R + +P++LDI ++IL+N DE R++NG R TD I VP + FR
Sbjct: 129 FDLNFSRTAYTSLPDNLDILNENILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVM 188
Query: 178 LRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRW-P 236
+R ++ W K+RG+Y V FL GI+ +LVA++ L+ +FF+VY+ W W
Sbjct: 189 VRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVISENYQLDNVRLLEKFFQVYSSWDWLR 248
Query: 237 NPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQ 296
PV+L ++ N K K ++ I+TPA P N++++++ +L ++ E +
Sbjct: 249 TPVMLGTNDDF-----------NDKKKEGVIQILTPASPSENAAFSITKFSLEMIKRELK 297
Query: 297 RGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQ 356
RG EI +E DW LF+P F Y ++ +++ + + L G ES L
Sbjct: 298 RGQEIVHEF-SSEGVNDWAKLFKPRHLFCGYYIFIEFIVTSSSLEGLTTTIGKFESGLVN 356
Query: 357 LTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFMGLQRKQGVPV 401
L +K +++ + P F D+ Y Y++G+ K+ PV
Sbjct: 357 L-MKGLSEIEEIIEANVIPNGFLDEENEKYF-YYVGMNVKRDCPV 399
>sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=aroB PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 123 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQIL 165
L A + LW I +DLD S DSIL+NA++ S C V QI+
Sbjct: 190 LIADVELWEILKDLDGSTDSILENAEKIIYHS---CNVKRQIV 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,260,359
Number of Sequences: 539616
Number of extensions: 11689333
Number of successful extensions: 28752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 28302
Number of HSP's gapped (non-prelim): 166
length of query: 696
length of database: 191,569,459
effective HSP length: 125
effective length of query: 571
effective length of database: 124,117,459
effective search space: 70871069089
effective search space used: 70871069089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)