Query 005445
Match_columns 696
No_of_seqs 211 out of 502
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 2E-113 8E-118 952.7 45.1 448 7-458 18-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 6E-109 2E-113 920.1 47.3 441 6-453 4-528 (530)
3 2ikf_A RNA uridylyl transferas 100.0 1.9E-44 6.6E-49 383.3 15.3 268 1-302 1-348 (353)
4 4fh3_A Poly(A) RNA polymerase 100.0 1.2E-42 4.1E-47 366.0 22.9 247 40-320 27-348 (349)
5 4e8f_A Poly(A) RNA polymerase 100.0 4.5E-41 1.5E-45 364.3 23.6 282 8-327 25-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 1.4E-41 4.8E-46 358.0 18.9 247 26-305 16-299 (323)
7 2b4v_A RNA editing complex pro 100.0 1.6E-31 5.6E-36 294.3 18.7 286 17-307 9-442 (468)
8 3hj4_A Minor editosome-associa 100.0 2.8E-29 9.7E-34 270.0 21.1 260 26-321 6-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 6E-28 2E-32 265.4 25.1 214 28-304 135-437 (464)
10 1r89_A TRNA nucleotidyltransfe 98.7 9.9E-07 3.4E-11 96.9 21.4 314 30-418 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 98.3 5.9E-05 2E-09 79.8 22.6 109 171-295 201-323 (349)
12 4at7_A Interleukin enhancer-bi 93.2 5.5 0.00019 43.0 19.3 237 19-302 19-295 (364)
13 4at7_B NF90, interleukin enhan 91.5 10 0.00034 41.2 18.9 198 63-302 108-327 (383)
14 2fmp_A DNA polymerase beta; nu 74.6 12 0.00041 39.5 9.8 125 40-198 149-299 (335)
15 2bcq_A DNA polymerase lambda; 67.3 32 0.0011 36.3 11.1 101 63-198 184-293 (335)
16 2rff_A Putative nucleotidyltra 58.6 13 0.00046 33.0 5.3 30 60-92 46-75 (111)
17 1no5_A Hypothetical protein HI 56.3 17 0.00058 32.0 5.6 32 60-93 40-71 (114)
18 1jaj_A DNA polymerase beta-lik 56.1 19 0.00064 34.9 6.3 93 63-198 46-143 (174)
19 3b0x_A DNA polymerase beta fam 55.7 51 0.0017 37.0 10.7 116 39-198 156-286 (575)
20 2ihm_A POL MU, DNA polymerase 45.0 70 0.0024 34.1 9.2 59 40-99 153-226 (360)
21 1ylq_A Putative nucleotidyltra 34.8 37 0.0013 28.9 4.2 16 60-75 30-46 (96)
22 1wot_A Putative minimal nucleo 28.9 34 0.0012 29.3 3.0 17 60-76 38-54 (98)
23 1jms_A Terminal deoxynucleotid 26.5 2.3E+02 0.0079 30.3 9.5 61 39-99 172-248 (381)
24 3jz0_A Lincosamide nucleotidyl 24.3 98 0.0033 32.1 5.9 59 63-128 57-116 (287)
25 2w9m_A Polymerase X; SAXS, DNA 20.3 77 0.0026 35.6 4.5 106 40-199 160-277 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=2.3e-113 Score=952.65 Aligned_cols=448 Identities=45% Similarity=0.795 Sum_probs=414.4
Q ss_pred ccccccCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---------------------------
Q 005445 7 QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------------------------- 59 (696)
Q Consensus 7 ~~~Gvt~PIS~~~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~--------------------------- 59 (696)
++||||+|||+++||++|+..|++|+++|++++++||+||.++|++||++|++
T Consensus 18 ~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v 97 (514)
T 1q79_A 18 KHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKI 97 (514)
T ss_dssp -CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEE
T ss_pred cccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceE
Confidence 68999999999999999999999999999999999999999999999998665
Q ss_pred ---------ccCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEECCeeeEEEeecccCC
Q 005445 60 ---------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLW 130 (696)
Q Consensus 60 ---------V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~~GI~iDL~fa~l~~~ 130 (696)
+|+|+||||++|++|.+++++ +||..|+++|++.++++++++|++|+||||||+++||+|||+||+++..
T Consensus 98 ~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~ 176 (514)
T 1q79_A 98 FTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQ 176 (514)
T ss_dssp EEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCS
T ss_pred EEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcc
Confidence 789999999999999999984 9999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHH
Q 005445 131 VIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 210 (696)
Q Consensus 131 ~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArv 210 (696)
.+|+++++.++++|+++|+++++||||+|++|+|+++||+.++||.++|+||+|||+||||+|++||||||+|+||||++
T Consensus 177 ~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~ 256 (514)
T 1q79_A 177 TIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 256 (514)
T ss_dssp SBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHH
T ss_pred cCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHHH
Q 005445 211 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRI 290 (696)
Q Consensus 211 CQlyPnas~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~v 290 (696)
||+||++++++||.+||++|++|+|++||+|+.+++|.+++++|+|+.++.|++|+|||+||++|++|+|+||+++|+++
T Consensus 257 ~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~ 336 (514)
T 1q79_A 257 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMV 336 (514)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhcccEEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhcccccee
Q 005445 291 MMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQ 370 (696)
Q Consensus 291 I~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ 370 (696)
|++||+||+++|+++..++. +|++||+|++||.+|+|||+|++++.+++++.+|.||||||||.|+.+||+.. .+..
T Consensus 337 I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~-~i~~ 413 (514)
T 1q79_A 337 MVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITL 413 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEE
T ss_pred HHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC-Ccee
Confidence 99999999999999998887 99999999999999999999999999999999999999999999999999864 4556
Q ss_pred eccCCCCCCCCC-----CCceEEEEEeeEecC---CCCCCCCcccchHHHHHHHHHHHHhhccCCCCcEEEEEEecCCCC
Q 005445 371 CHPHPGDFSDKS-----KPLYCSYFMGLQRKQ---GVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNL 442 (696)
Q Consensus 371 ahp~P~~f~~~~-----~~~~~~ffIGL~~~~---~~~~~~~~~~DL~~~v~eF~~~v~~~~~~~~gm~i~V~~vkr~~L 442 (696)
|||||++|.+.. ..|+++|||||+++. ......+.++||+.++++|++.|++|..|++||+|+|+|||+++|
T Consensus 414 a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~L 493 (514)
T 1q79_A 414 AHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493 (514)
T ss_dssp EEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHH
T ss_pred eecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHC
Confidence 999999997653 358899999999865 222234567999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCC
Q 005445 443 PNFVFPGGVRPSRPSK 458 (696)
Q Consensus 443 P~~v~~~~~~~~~~~~ 458 (696)
|++||++|.+++|+..
T Consensus 494 p~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 494 HQLLPSHVLQKKKKHS 509 (514)
T ss_dssp GGGCC-----------
T ss_pred chhhcchhccCCCCCC
Confidence 9999999998887644
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=5.9e-109 Score=920.11 Aligned_cols=441 Identities=41% Similarity=0.748 Sum_probs=415.8
Q ss_pred CccccccCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--------------------------
Q 005445 6 GQRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ-------------------------- 59 (696)
Q Consensus 6 ~~~~Gvt~PIS~~~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~-------------------------- 59 (696)
.++||||+|||+++||++|++.+++|+++|++++++||+||.++|++||++|++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 589999999999999999999999999999999999999999999999988765
Q ss_pred ----------ccCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEECCeeeEEEeecccC
Q 005445 60 ----------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSL 129 (696)
Q Consensus 60 ----------V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~~GI~iDL~fa~l~~ 129 (696)
+|+|+||||++|++|.+++++ +||..|+++|++.++++++++|++|+||||||+++||+|||+||+++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 789999999999999999984 999999999999999999999999999999999999999999999998
Q ss_pred CCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHH
Q 005445 130 WVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 209 (696)
Q Consensus 130 ~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVAr 209 (696)
.++|+++++.++++|+++|++|+|||||+|++++|+++||+.++||.++|+||+|||+||||+|++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHH
Q 005445 210 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 289 (696)
Q Consensus 210 vCQlyPnas~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~ 289 (696)
+||+||++++++||.+||++|++|+|++||+|+.+++|.+++++|+|+.|..|+.|+|||+||++|++|+|+|||.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999999889899999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhcccEEEEEEEec-ChhhhcchhhhhHHHHHHHHHHHhhccccc
Q 005445 290 IMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAE-NADDLRNWKGWVESRLRQLTLKIERHTYNM 368 (696)
Q Consensus 290 vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~ 368 (696)
+|++||+||+++|+++..++. +|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+. +++
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~-~~i 399 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGI 399 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTE
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcc-cCc
Confidence 999999999999999988777 99999999999999999999999998 99999999999999999999999994 567
Q ss_pred eeeccCCCCCCCC--------------------------------------------CCCceEEEEEeeEecCCCCCCCC
Q 005445 369 LQCHPHPGDFSDK--------------------------------------------SKPLYCSYFMGLQRKQGVPVGEG 404 (696)
Q Consensus 369 l~ahp~P~~f~~~--------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~ 404 (696)
..|||||+.|.+. ...++++|||||+++.. ..+
T Consensus 400 ~~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~ 476 (530)
T 2hhp_A 400 KIAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKK 476 (530)
T ss_dssp EEEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------C
T ss_pred eeeecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCC
Confidence 7899999998421 12367899999998753 235
Q ss_pred cccchHHHHHHHHHHHHhhcc-CCCC-cE-EEEEEecCCCCCCCcCCCCCCC
Q 005445 405 EQFDIRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRNLPNFVFPGGVRP 453 (696)
Q Consensus 405 ~~~DL~~~v~eF~~~v~~~~~-~~~g-m~-i~V~~vkr~~LP~~v~~~~~~~ 453 (696)
+++||+.++++|++.|++|.. |++| |+ |.|+|||+++||++||++|+++
T Consensus 477 ~~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~ 528 (530)
T 2hhp_A 477 EKVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKR 528 (530)
T ss_dssp CCCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCC
T ss_pred ceEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcC
Confidence 689999999999999999998 8887 78 9999999999999999977643
No 3
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.9e-44 Score=383.26 Aligned_cols=268 Identities=17% Similarity=0.243 Sum_probs=207.2
Q ss_pred CCCCCC---ccccccCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc------------------
Q 005445 1 MGSSNG---QRLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ------------------ 59 (696)
Q Consensus 1 ~~~~~~---~~~Gvt~PIS~~~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~------------------ 59 (696)
|||+.- ..-|+++++|.++||++++ +++|++++++ .+++.+|.++|++++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~ 76 (353)
T 2ikf_A 1 MGSSHHHHHHSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTV 76 (353)
T ss_dssp ----------------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHH
T ss_pred CCCccccccccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 677544 3469999999999999997 8899999986 45788889999999998877
Q ss_pred ---ccCCCCceeEEEecCCCCCc--------------cccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEE-CCeeeE
Q 005445 60 ---VHGPGADIDTLCVGPRHATR--------------EEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSID 121 (696)
Q Consensus 60 ---V~~pgSDID~LcV~P~~vtr--------------~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~-~GI~iD 121 (696)
+++|+||||++|+.|.+++. ..+++..+...|++.+.+.+++.|.+|+||||||++ .||+||
T Consensus 77 vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~~~~i~~D 156 (353)
T 2ikf_A 77 VYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKGGGAVDFD 156 (353)
T ss_dssp HHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEECSSSCEEE
T ss_pred ccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEcCCCcEEE
Confidence 57899999999998753210 026888999999987778899999999999999999 699999
Q ss_pred EEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCC-CCcch
Q 005445 122 LLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVA-GFLGG 200 (696)
Q Consensus 122 L~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~-GfLGG 200 (696)
|+|++ .+|++.++.|..++...++||.++++||+|||+||||++.. |+|||
T Consensus 157 is~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lss 208 (353)
T 2ikf_A 157 ITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITS 208 (353)
T ss_dssp EEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCH
T ss_pred EEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchH
Confidence 99965 36899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhh------CC------------------------CCCHHHHHHHHHHhhc-cCCCCCceeccccccCCC
Q 005445 201 INWALLVARICQL------YP------------------------NAVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL 249 (696)
Q Consensus 201 IswAILVArvCQl------yP------------------------nas~~~LL~~FF~~Ys-~WdWp~PV~L~~i~~g~l 249 (696)
|+|+|||+++||. +| +.+++.||.+||+||+ +|||.++|+. +..|..
T Consensus 209 y~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIs--i~~~~~ 286 (353)
T 2ikf_A 209 YGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVIS--LNRPGI 286 (353)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEEC--SSSSSC
T ss_pred HHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEE--cCCCcc
Confidence 9999999999985 23 2356899999999999 7999998763 333322
Q ss_pred ---CccccCCC------CCCCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHH
Q 005445 250 ---GLQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEIC 302 (696)
Q Consensus 250 ---g~~vWdP~------~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il 302 (696)
..+.|+++ .++.++.+.|+|+||++|.+|+|++|+.++++.|++||+||++++
T Consensus 287 ~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 287 TTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp EEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred eechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 12367642 222345678999999999999999999999999999999999876
No 4
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.2e-42 Score=366.03 Aligned_cols=247 Identities=19% Similarity=0.231 Sum_probs=201.3
Q ss_pred CCCCHHHHHHHHHHHHhhcc--------------------ccCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceE
Q 005445 40 LYESQEEAVSREEVLGRLDQ--------------------VHGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTE 99 (696)
Q Consensus 40 l~eS~EE~~~Re~VL~~L~~--------------------V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~ 99 (696)
+-||+||.+.|++++++|++ +++|+||||++|+.|....++ .++..+...+.. ...+
T Consensus 27 ~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~-~~~~~~~~~~~~--~~~~ 103 (349)
T 4fh3_A 27 IKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIA--EGFE 103 (349)
T ss_dssp HBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHH-HHHHHHHHHHHH--TTEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChH-HHHHHHHHHHHh--hccc
Confidence 67999999999999999887 789999999999999988874 677666666654 3467
Q ss_pred EeecCCCCcceEEEEE-------CCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChh
Q 005445 100 LHPVPDAHVPVMKFKF-------SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQ 172 (696)
Q Consensus 100 l~~V~~A~VPIIKf~~-------~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~ 172 (696)
++.|.+|+||||||.+ .|++||++|.+ .+|+|.++.|..+++..+
T Consensus 104 ~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------------------~~g~~~t~ll~~~~~~~~ 155 (349)
T 4fh3_A 104 GKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------------------RLAIHNTLLLSSYTKLDA 155 (349)
T ss_dssp EEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------------------HHHHHHHHHHHHHHHHCT
T ss_pred ceEeeeeeeeeEEEEecccccccccceeecCcCc----------------------------chHHHHHHHHHHHhhcCH
Confidence 8899999999999997 37899999854 469999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhh------CCC------------------------------
Q 005445 173 NFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL------YPN------------------------------ 216 (696)
Q Consensus 173 ~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQl------yPn------------------------------ 216 (696)
+||.++++||+|||+||||++..|+||||+|+|||+++||. +|+
T Consensus 156 ~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 235 (349)
T 4fh3_A 156 RLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQ 235 (349)
T ss_dssp THHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCS
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhccccc
Confidence 99999999999999999999999999999999999999984 232
Q ss_pred --CCHHHHHHHHHHhhc-cCCCCCceeccccccCCC---------CccccCCCCCCCCCcccceeeCCCCCCCCcccccC
Q 005445 217 --AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---------GLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVS 284 (696)
Q Consensus 217 --as~~~LL~~FF~~Ys-~WdWp~PV~L~~i~~g~l---------g~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs 284 (696)
.+++.||.+||+||+ +|||++.|+......+.+ ....|++..+..++.+.|+|+||++|.+|+|++|+
T Consensus 236 n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs 315 (349)
T 4fh3_A 236 NYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVS 315 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCC
T ss_pred CcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCC
Confidence 368899999999999 599999887543222221 11233333333445678999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 005445 285 TSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 320 (696)
Q Consensus 285 ~sTl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep 320 (696)
..+++.|+.||+||+++|++. ..+.+|++||+.
T Consensus 316 ~~~~~~I~~eF~~A~~~L~~~---~~~~~~~~lfe~ 348 (349)
T 4fh3_A 316 SSGLYRIRGEFMAASRLLNSR---SYPIPYDSLFEE 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---SSSCCGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCc---ccCCCHHHHhhc
Confidence 999999999999999999752 223489999985
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=4.5e-41 Score=364.34 Aligned_cols=282 Identities=17% Similarity=0.214 Sum_probs=223.2
Q ss_pred cccccCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--------------------ccCCCCce
Q 005445 8 RLGITEPISLAGPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------------------VHGPGADI 67 (696)
Q Consensus 8 ~~Gvt~PIS~~~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~--------------------V~~pgSDI 67 (696)
-.|.+.+-|.....++.-+++++|.++++. +-||+||.++|++++.+|+. +++|+|||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDi 102 (405)
T 4e8f_A 25 NLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDM 102 (405)
T ss_dssp -------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCE
T ss_pred cccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCE
Confidence 356777777666677777889999999986 88999999999999999887 68899999
Q ss_pred eEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEE---C----CeeeEEEeecccCCCcCCCCCCCc
Q 005445 68 DTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF---S----GVSIDLLYARLSLWVIPEDLDISQ 140 (696)
Q Consensus 68 D~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~---~----GI~iDL~fa~l~~~~vpe~ldl~~ 140 (696)
|++|+.|.....+ +++..+...|++. ..+++.|..|+||||||++ . ||+|||+|++.
T Consensus 103 Dl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~------------- 166 (405)
T 4e8f_A 103 DLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR------------- 166 (405)
T ss_dssp EEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCH-------------
T ss_pred EEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeeccc-------------
Confidence 9999999876653 7999999999986 6789999999999999996 4 99999999752
Q ss_pred hhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHH-hh-----C
Q 005445 141 DSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC-QL-----Y 214 (696)
Q Consensus 141 d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvC-Ql-----y 214 (696)
+|++.+..|..++...++||.++++||+|||+||||++..|+||||+|+|||+++| |. +
T Consensus 167 ---------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvl 231 (405)
T 4e8f_A 167 ---------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVF 231 (405)
T ss_dssp ---------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSS
T ss_pred ---------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcC
Confidence 47778888888877788999999999999999999999999999999999999999 73 2
Q ss_pred CC--------------------------------CCHHHHHHHHHHhhc-cCCCCCceeccccc-cCC-CC--ccccCCC
Q 005445 215 PN--------------------------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE-EGS-LG--LQVWDPR 257 (696)
Q Consensus 215 Pn--------------------------------as~~~LL~~FF~~Ys-~WdWp~PV~L~~i~-~g~-lg--~~vWdP~ 257 (696)
|+ .+++.||..||+||+ +|||.+.|+. ++ .|. +. .+.|...
T Consensus 232 P~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIs--ir~~g~~~~K~~k~w~~~ 309 (405)
T 4e8f_A 232 PNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVT--FRRPDGYLTKQEKGWTSA 309 (405)
T ss_dssp CCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEEC--SSSTTCCCBHHHHTCCC-
T ss_pred CchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEE--EecCCccccccccccccc
Confidence 32 468999999999999 7999998764 43 342 22 2468764
Q ss_pred CC-------CCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhc
Q 005445 258 RN-------PKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 327 (696)
Q Consensus 258 ~~-------~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep~~FF~~Y 327 (696)
.. ..++.+.|+|++|+.|.+|+|++|+..+++.|+.||+||+++|+.... +.+|+.||+++++..+.
T Consensus 310 ~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~---~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 310 TEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY---PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp ------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS---SCCGGGGGSCCCCC---
T ss_pred ccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc---CCCHHHHhCcCCCcccc
Confidence 21 113457999999999999999999999999999999999999975321 34899999999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=358.02 Aligned_cols=247 Identities=21% Similarity=0.306 Sum_probs=208.9
Q ss_pred HhhHHHHHHHHHc--CCCCCHHHHHHHHHHHHhhcc--------------------ccCCCCceeEEEecCCCCCccccH
Q 005445 26 MRTRKLEKYLRDV--NLYESQEEAVSREEVLGRLDQ--------------------VHGPGADIDTLCVGPRHATREEDF 83 (696)
Q Consensus 26 ~~t~~L~~~L~~~--~l~eS~EE~~~Re~VL~~L~~--------------------V~~pgSDID~LcV~P~~vtr~edF 83 (696)
...+.|.++|+++ -+-||+||.+.|++++++|++ +++|+||||++|+.|.......++
T Consensus 16 ~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~ 95 (323)
T 3nyb_A 16 EISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNN 95 (323)
T ss_dssp SHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHH
Confidence 3344455555444 288999999999999999887 688999999999999865322368
Q ss_pred HHHHHHHHhCCCCceEEeecCCCCcceEEEEE--CCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhH
Q 005445 84 FGELHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVT 161 (696)
Q Consensus 84 F~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~--~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvt 161 (696)
+..+.+.|++.+.++++++|..|+||||||++ .||+|||+|++ .+|+|.+
T Consensus 96 l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~----------------------------~~g~~~t 147 (323)
T 3nyb_A 96 LYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER----------------------------TNGIEAA 147 (323)
T ss_dssp HHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC----------------------------SSTTHHH
T ss_pred HHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC----------------------------cHHHHHH
Confidence 99999999998888999999999999999996 79999999975 3689999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhCCC---------CCHHHHHHHHHHhhc-
Q 005445 162 DQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN---------AVPSMLVSRFFRVYT- 231 (696)
Q Consensus 162 d~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQlyPn---------as~~~LL~~FF~~Ys- 231 (696)
+.|.++++..++||.++++||+|||+||||++..|+||||+|+|||+++||++|+ .+++.||.+||+||+
T Consensus 148 ~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~ 227 (323)
T 3nyb_A 148 KLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGK 227 (323)
T ss_dssp HHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999985 367899999999999
Q ss_pred cCCCCCceeccccccCC---CCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHH
Q 005445 232 QWRWPNPVLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAM 305 (696)
Q Consensus 232 ~WdWp~PV~L~~i~~g~---lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i 305 (696)
+|||++.++. ++.|. +..+.|.. ..+..+.+.|+|++|+.|..|+++++ ..++.|++||++|++++.+-
T Consensus 228 ~Fd~~~~~Is--v~~g~~~~~~k~~~~~-~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 228 NFGYDDVALG--SSDGYPVYFPKSTWSA-IQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp TCCTTTEEEE--ESSSCEEEEEGGGCGG-GCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEE--EecCCcceeeHHhccc-ccccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHHHHHHHHh
Confidence 8999997763 44443 22345653 22234467999999999999999985 45889999999999999763
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.97 E-value=1.6e-31 Score=294.34 Aligned_cols=286 Identities=15% Similarity=0.187 Sum_probs=193.7
Q ss_pred CCCCCHHHHH-hhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---------------------ccCCCCceeEEEecC
Q 005445 17 LAGPTDDDLM-RTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ---------------------VHGPGADIDTLCVGP 74 (696)
Q Consensus 17 ~~~Pt~~d~~-~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~---------------------V~~pgSDID~LcV~P 74 (696)
.-.|....++ ....+.+.... .-+++++.+.|+.++++|+. +++|+||||++|+.+
T Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~ 86 (468)
T 2b4v_A 9 KLNPSPDHYAVWGKAIMAENNR--RVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFD 86 (468)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECS
T ss_pred cCCCChHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecC
Confidence 3445555443 33333433333 34778889999899888877 678999999999987
Q ss_pred CCCCcc-ccHH--HHHHHHHhCC-CC--ceEEeecCCCCcceEEEEECC-------------------------------
Q 005445 75 RHATRE-EDFF--GELHQMLTEM-PE--VTELHPVPDAHVPVMKFKFSG------------------------------- 117 (696)
Q Consensus 75 ~~vtr~-edFF--~~l~~~L~~~-~~--V~~l~~V~~A~VPIIKf~~~G------------------------------- 117 (696)
...... .... ..+...|++. ++ +.++++|++|+||||||++.+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 166 (468)
T 2b4v_A 87 DPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQC 166 (468)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCC
T ss_pred CCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccc
Confidence 321111 0111 2478888875 55 578999999999999998322
Q ss_pred ---------------------------ee--eEEEeeccc-----CCCcCCCCCC----Cchhhhcccc-----------
Q 005445 118 ---------------------------VS--IDLLYARLS-----LWVIPEDLDI----SQDSILQNAD----------- 148 (696)
Q Consensus 118 ---------------------------I~--iDL~fa~l~-----~~~vpe~ldl----~~d~lL~~lD----------- 148 (696)
+. +|++|.+.. ....|+.-.+ .++-.+..+|
T Consensus 167 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~ 246 (468)
T 2b4v_A 167 VGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYR 246 (468)
T ss_dssp CCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSC
T ss_pred cccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceE
Confidence 22 456665420 0111111000 0000001111
Q ss_pred -hhhHhhhchhhhHHHHHHhCCChhh-HHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhC------------
Q 005445 149 -EQTVRSLNGCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY------------ 214 (696)
Q Consensus 149 -e~svrSLNG~Rvtd~IlrlVPn~~~-FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQly------------ 214 (696)
+-|.. .+|++.++.|..++-..++ ||.++++||+|||+|||+++..|+||||+|++||++++|..
T Consensus 247 ~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP 325 (468)
T 2b4v_A 247 WDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLP 325 (468)
T ss_dssp EEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSC
T ss_pred EEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCccccc
Confidence 12333 6899999999888887788 99999999999999999999999999999999999999864
Q ss_pred -----CC------------CCHHHHHHHHHHhhc-cCCCCCceeccccccCCC---CccccCCCCCC-CCCcccceeeCC
Q 005445 215 -----PN------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---GLQVWDPRRNP-KDKYHLMPIITP 272 (696)
Q Consensus 215 -----Pn------------as~~~LL~~FF~~Ys-~WdWp~PV~L~~i~~g~l---g~~vWdP~~~~-~Dr~hlMpIiTP 272 (696)
|+ .+++.||..||+||+ +|||.+.++. +..|.. ..+.|+...+. ....+.|+|++|
T Consensus 326 ~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vIS--ir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDP 403 (468)
T 2b4v_A 326 HPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVS--LNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDP 403 (468)
T ss_dssp CGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBC--SSSSSCEEHHHHTCCCGGGEETTEECSSCBBCS
T ss_pred chhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEE--ecCCcceecccccccccccccCCCcceEEEECC
Confidence 11 157899999999999 8999998762 344432 12357642111 111247999999
Q ss_pred CCC----CCCcccccChhHHHHHHHHHHHHHHHHHHHHh
Q 005445 273 AYP----CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEK 307 (696)
Q Consensus 273 a~P----~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i~~ 307 (696)
+.| ..|+|++|+..+++.|+.||++|+++|+....
T Consensus 404 fd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~ 442 (468)
T 2b4v_A 404 YEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP 442 (468)
T ss_dssp STTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999 99999999999999999999999999986543
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.96 E-value=2.8e-29 Score=270.01 Aligned_cols=260 Identities=17% Similarity=0.229 Sum_probs=191.1
Q ss_pred HhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--------------------ccCCCCceeEEEecCCCCC------c
Q 005445 26 MRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------------------VHGPGADIDTLCVGPRHAT------R 79 (696)
Q Consensus 26 ~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~--------------------V~~pgSDID~LcV~P~~vt------r 79 (696)
+.++++.++.+. +-||++|...|++++.+|++ +++|+||||+++..+.... +
T Consensus 6 ~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~ 83 (384)
T 3hj4_A 6 EFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMER 83 (384)
T ss_dssp HHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccch
Confidence 456666666654 88999999999999999886 6889999999888765321 0
Q ss_pred c-ccHHHH---HHHHHhCCCCceEEeecCCCCcceEEEEE--CCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHh
Q 005445 80 E-EDFFGE---LHQMLTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVR 153 (696)
Q Consensus 80 ~-edFF~~---l~~~L~~~~~V~~l~~V~~A~VPIIKf~~--~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svr 153 (696)
. ...... +...+.. .+++.+. |..|+||||||.. .||+|||+|++.
T Consensus 84 ~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~-------------------------- 135 (384)
T 3hj4_A 84 VDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI-------------------------- 135 (384)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH--------------------------
T ss_pred hhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc--------------------------
Confidence 0 001111 2222221 3666665 4599999999997 699999999752
Q ss_pred hhchhhhHHHHHHhCCC-hhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhC---CCC------------
Q 005445 154 SLNGCRVTDQILRLVPK-IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY---PNA------------ 217 (696)
Q Consensus 154 SLNG~Rvtd~IlrlVPn-~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQly---Pna------------ 217 (696)
+|++.++.|..+.-. .++||.++++||+||++|||+++..|+||||+|++||++++|.. |+.
T Consensus 136 --~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~ 213 (384)
T 3hj4_A 136 --GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTV 213 (384)
T ss_dssp --HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCH
T ss_pred --chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccc
Confidence 477778877777776 45799999999999999999999999999999999999999964 210
Q ss_pred ------------------------CHHHH----HHHHHHhhccCCCCCcee-ccccccC-C------------CC---cc
Q 005445 218 ------------------------VPSML----VSRFFRVYTQWRWPNPVL-LCAIEEG-S------------LG---LQ 252 (696)
Q Consensus 218 ------------------------s~~~L----L~~FF~~Ys~WdWp~PV~-L~~i~~g-~------------lg---~~ 252 (696)
+++.| |..||+||+.|||.+-|+ |..+..- . +| -+
T Consensus 214 ~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~ 293 (384)
T 3hj4_A 214 ADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRL 293 (384)
T ss_dssp HHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhh
Confidence 25666 899999999999998665 4332210 0 01 12
Q ss_pred ccCC------CCCC----------------CCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHHHhccC
Q 005445 253 VWDP------RRNP----------------KDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEA 310 (696)
Q Consensus 253 vWdP------~~~~----------------~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i~~~~~ 310 (696)
.|.. ...+ .....++.|.+ +.-..|+++.|+.+....|+.||+||++|+..-+.+.
T Consensus 294 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 371 (384)
T 3hj4_A 294 EWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESEL- 371 (384)
T ss_dssp HHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGGC-
T ss_pred hhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhcccccc-
Confidence 3321 0001 12246899999 9999999999999999999999999999997544332
Q ss_pred CCCcccccCCc
Q 005445 311 DVDWDTLFEPF 321 (696)
Q Consensus 311 ~~~W~~Lfep~ 321 (696)
+.+++|...
T Consensus 372 --~~~~~~~~~ 380 (384)
T 3hj4_A 372 --KFDEVFRES 380 (384)
T ss_dssp --CHHHHTCCC
T ss_pred --cHHHHhhhc
Confidence 677777543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.96 E-value=6e-28 Score=265.44 Aligned_cols=214 Identities=16% Similarity=0.253 Sum_probs=168.8
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--------------------ccCCCCceeEEEecCCCCC---------
Q 005445 28 TRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ--------------------VHGPGADIDTLCVGPRHAT--------- 78 (696)
Q Consensus 28 t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~--------------------V~~pgSDID~LcV~P~~vt--------- 78 (696)
++++.++.+. +-||++|.+.|.+++.+|++ ++.|+||||+++..+....
T Consensus 135 ~~EI~~f~~~--i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~ 212 (464)
T 3pq1_A 135 DDQLNTLLKE--FQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGN 212 (464)
T ss_dssp HHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccc
Confidence 3444444443 67999999999999999877 6889999998776543210
Q ss_pred -------------c--cccHHHHHHHHHhC-CCCceEEeecCCCCcceEEEEEC--CeeeEEEeecccCCCcCCCCCCCc
Q 005445 79 -------------R--EEDFFGELHQMLTE-MPEVTELHPVPDAHVPVMKFKFS--GVSIDLLYARLSLWVIPEDLDISQ 140 (696)
Q Consensus 79 -------------r--~edFF~~l~~~L~~-~~~V~~l~~V~~A~VPIIKf~~~--GI~iDL~fa~l~~~~vpe~ldl~~ 140 (696)
| .......+.+.|++ .+++.+++.|..|+||||||... ||+|||+|++.
T Consensus 213 ~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~------------- 279 (464)
T 3pq1_A 213 FLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNR------------- 279 (464)
T ss_dssp ---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCT-------------
T ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCC-------------
Confidence 0 01245667778877 47899999999999999999995 99999999752
Q ss_pred hhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCC-cchHHHHHHHHHHHhhC-----
Q 005445 141 DSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGF-LGGINWALLVARICQLY----- 214 (696)
Q Consensus 141 d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~Gf-LGGIswAILVArvCQly----- 214 (696)
+|++.+..|..+.-..++||.++.+||+|||+|||+++..|. ||+|+|++||++++|..
T Consensus 280 ---------------~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvL 344 (464)
T 3pq1_A 280 ---------------IALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPIL 344 (464)
T ss_dssp ---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC----
T ss_pred ---------------cHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcC
Confidence 578889888888888899999999999999999999999996 99999999999999974
Q ss_pred CC------------------------------------CCHHHHHHHHHHhhccCCCCCceeccccccCCCCccccCCCC
Q 005445 215 PN------------------------------------AVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRR 258 (696)
Q Consensus 215 Pn------------------------------------as~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g~lg~~vWdP~~ 258 (696)
|+ .+++.||..||+||++|||.+-|+-
T Consensus 345 P~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs----------------- 407 (464)
T 3pq1_A 345 PTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX----------------- 407 (464)
T ss_dssp ---CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-----------------
T ss_pred CChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-----------------
Confidence 21 2468999999999999999986641
Q ss_pred CCCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHH
Q 005445 259 NPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEA 304 (696)
Q Consensus 259 ~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~ 304 (696)
| ..|++.||+.+.++.++.|+++|..||+.
T Consensus 408 ----------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 408 ----------X------XXXXXXXVSQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp ----------C------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------c------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence 1 78999999999999999999999999984
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=98.69 E-value=9.9e-07 Score=96.85 Aligned_cols=314 Identities=19% Similarity=0.205 Sum_probs=178.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH----HHhhcc--------------ccCCC-CceeEEEecCCCCCccccH----HHH
Q 005445 30 KLEKYLRDVNLYESQEEAVSREEV----LGRLDQ--------------VHGPG-ADIDTLCVGPRHATREEDF----FGE 86 (696)
Q Consensus 30 ~L~~~L~~~~l~eS~EE~~~Re~V----L~~L~~--------------V~~pg-SDID~LcV~P~~vtr~edF----F~~ 86 (696)
-+.++|.. +-|+++|.+.=..+ ...|+. ++.+| +|||+.++.|....++ ++ ...
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e-~l~~~~l~~ 82 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKE-ELRERGLEI 82 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHH-HHHHHHHHH
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHH-HHHHHHHHH
Confidence 34555554 56666665443333 333332 45554 8999999998876643 32 223
Q ss_pred HHHHHhCCCCceEEeecCCCCcceEEEEECCeeeEEEeecccCCCcCCCCCCCchh-hhcccchhhHhhhchhhhHHHHH
Q 005445 87 LHQMLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDS-ILQNADEQTVRSLNGCRVTDQIL 165 (696)
Q Consensus 87 l~~~L~~~~~V~~l~~V~~A~VPIIKf~~~GI~iDL~fa~l~~~~vpe~ldl~~d~-lL~~lDe~svrSLNG~Rvtd~Il 165 (696)
+.+.|++ . -+.-|--|-+...+.|+++|++=|-- +.+.. +....|- ...-++++.
T Consensus 83 ~~e~l~~---~----~~~ya~hpyV~~~f~g~~vDVVP~y~----------v~~g~~~~tavDr-------tp~H~~fv~ 138 (437)
T 1r89_A 83 GKAVLDS---Y----EIRYAEHPYVHGVVKGVEVDVVPCYK----------LKEPKNIKSAVDR-------TPFHHKWLE 138 (437)
T ss_dssp HHHHSSS---E----EEEESSSEEEEEEETTEEEEEEEEEC----------CSSSSCCCSHHHH-------HHHHHHHHT
T ss_pred HHHHHHH---h----hhhccCCceEEEEecceEEEEEEEEE----------ccCCccccccccC-------cHHHHHHHH
Confidence 3344432 2 24556668888889999999985521 11111 1111110 012334444
Q ss_pred HhCCChhhHHHHHHHHHHHHHHhcCCcC--CCCCcchHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCceeccc
Q 005445 166 RLVPKIQNFRTTLRCMRFWAKRRGVYSN--VAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCA 243 (696)
Q Consensus 166 rlVPn~~~FR~~LR~IK~WAKrRGIYsn--~~GfLGGIswAILVArvCQlyPnas~~~LL~~FF~~Ys~WdWp~PV~L~~ 243 (696)
+...+ ++..+|.+|.|.|.-|+|++ ..+.++||.+=||++++ .+-..+|..++ +|..++.+.
T Consensus 139 ~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~~------~w~~~~~Id- 202 (437)
T 1r89_A 139 GRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNAR------RWTRRTVID- 202 (437)
T ss_dssp TTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHHT------TCCTTEEEE-
T ss_pred hhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHHH------HhCCCeEEe-
Confidence 43333 89999999999999999988 45679999999999993 24444444443 454455441
Q ss_pred cccCCCCccccCCCCCCCCCcccceeeCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCc--
Q 005445 244 IEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF-- 321 (696)
Q Consensus 244 i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~Lfep~-- 321 (696)
++.+ .. .....+.|++|..|..|+|.++|...+..+..+.+...+ .. =..+|.|.
T Consensus 203 ~~~~--------~~----~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~-------~p----s~~~f~~~~~ 259 (437)
T 1r89_A 203 VAKG--------EV----RKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME-------AP----SLGFFKPKHP 259 (437)
T ss_dssp GGGT--------EE----EECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH-------SC----CGGGGSCCCC
T ss_pred cCCC--------cc----cCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh-------Cc----cHHhcCCCCc
Confidence 1100 00 012467899999999999999999999888876665443 11 12344332
Q ss_pred ------chh---hh-cccEEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhccccceeec-cCCCCCCCCCCCceEEEE
Q 005445 322 ------TFF---EA-YKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCH-PHPGDFSDKSKPLYCSYF 390 (696)
Q Consensus 322 ------~FF---~~-Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ah-p~P~~f~~~~~~~~~~ff 390 (696)
++- .+ =.+.+.|.....+.-+ ...-|-++--.+.|...||+....++... .| .+. .|+.+
T Consensus 260 ~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~-D~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~----~~~----~~~l~ 330 (437)
T 1r89_A 260 LEIEPERLRKIVEERGTAVFAVKFRKPDIVD-DNLYPQLERASRKIFEFLERENFMPLRSAFKA----SEE----FCYLL 330 (437)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEEECCSCCH-HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE----CSS----EEEEE
T ss_pred cccCHHHHHHHHHhCCcEEEEEEECCCCCCc-ccchHHHHHHHHHHHHHHHHCCCEEEEecccc----cCC----eeEEE
Confidence 111 11 1245666665554322 23446666666777778888776666554 43 222 34444
Q ss_pred EeeEecCCC--CCCCCcccchHHHHHHHHH
Q 005445 391 MGLQRKQGV--PVGEGEQFDIRLTVKEFKQ 418 (696)
Q Consensus 391 IGL~~~~~~--~~~~~~~~DL~~~v~eF~~ 418 (696)
+=|....-. ....|..+..+.....|.+
T Consensus 331 ~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 331 FECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp EEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred EEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 444322110 1112334555556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=98.32 E-value=5.9e-05 Score=79.82 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhCCCC---CHHHHHHHHHHhhccCCCCCceeccccccC
Q 005445 171 IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEG 247 (696)
Q Consensus 171 ~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQlyPna---s~~~LL~~FF~~Ys~WdWp~PV~L~~i~~g 247 (696)
...|+.++|.+|+|-++.+. ....+.+.||.+-+|+++.....+.. +...-+..+|++.++|.- ..|
T Consensus 201 ~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i-------- 270 (349)
T 1px5_A 201 PTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCI-------- 270 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEE--------
T ss_pred cHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-cce--------
Confidence 46899999999999988764 22346689999999999998766543 455667888888887631 122
Q ss_pred CCCccccCCCCCCCC-----------CcccceeeCCCCCCCCcccccChhHHHHHHHHH
Q 005445 248 SLGLQVWDPRRNPKD-----------KYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEF 295 (696)
Q Consensus 248 ~lg~~vWdP~~~~~D-----------r~hlMpIiTPa~P~~Nst~NVs~sTl~vI~~Ef 295 (696)
.|.--++..+ +...-.|++|+.|..|++.. +......+..|.
T Consensus 271 -----~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~A 323 (349)
T 1px5_A 271 -----FWEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQEA 323 (349)
T ss_dssp -----CCCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHHH
T ss_pred -----eeeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHHH
Confidence 3432222111 01123699999999999887 777777777444
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=93.19 E-value=5.5 Score=42.96 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=135.4
Q ss_pred CCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc----------------------------ccCC-CCceeE
Q 005445 19 GPTDDDLMRTRKLEKYLRDVNLYESQEEAVSREEVLGRLDQ----------------------------VHGP-GADIDT 69 (696)
Q Consensus 19 ~Pt~~d~~~t~~L~~~L~~~~l~eS~EE~~~Re~VL~~L~~----------------------------V~~p-gSDID~ 69 (696)
.|.+.|-..++.|.+-= +.+.||++|...=..++.++.. .+.. +-|+|+
T Consensus 19 k~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dl 96 (364)
T 4at7_A 19 KPAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADL 96 (364)
T ss_dssp SCCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEE
T ss_pred CCCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeE
Confidence 35666777777776643 3599999998876666665532 2333 458999
Q ss_pred EEecCCCCCccccHH----HHHHHHHhCCCCceEEee-cCCCCcceEEEEECCeeeEEEeecccCCCcCCCCCCCchhhh
Q 005445 70 LCVGPRHATREEDFF----GELHQMLTEMPEVTELHP-VPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSIL 144 (696)
Q Consensus 70 LcV~P~~vtr~edFF----~~l~~~L~~~~~V~~l~~-V~~A~VPIIKf~~~GI~iDL~fa~l~~~~vpe~ldl~~d~lL 144 (696)
+|++-.-.|.+ .. ..+.+-|+....-..+.. +.+|-+ .| .-.+-.+=+++.- +|.++.-.+..
T Consensus 97 Vvl~k~lPT~e--~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~-~I--~~~~~~v~i~It~-----tsp~lrk~dp~-- 164 (364)
T 4at7_A 97 VVILKILPTLE--AVAALGNKVVESLRAQDPSEVLTMLTNETGF-EI--SSSDATVKILITT-----VPPNLRKLDPE-- 164 (364)
T ss_dssp EEEESSCCBHH--HHHHHHHHHHHHHHHHCTTSCCEEEEETTEE-EE--ECSSCEEEEEEEE-----CHHHHHTCCTT--
T ss_pred EEEecCCCCHH--HHHHHHHHHHHHhhhhccccceeeccCcceE-EE--ecCCCcEEEEEEe-----CChhhccCChh--
Confidence 99998887853 22 233333443211001111 111110 00 0011111122211 11111111111
Q ss_pred cccc-hhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHHHHHHHhhCC---CCCHH
Q 005445 145 QNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP---NAVPS 220 (696)
Q Consensus 145 ~~lD-e~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAILVArvCQlyP---nas~~ 220 (696)
..+| ..|..+|-..|-+..+...... ...+.++|.+|.-.+|.. .++-|.++++-+|+.+..-.-| ..+++
T Consensus 165 ~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~~l~~~ 239 (364)
T 4at7_A 165 LHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQPLALN 239 (364)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSSCCCHH
T ss_pred HhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCCCcCHH
Confidence 1233 4677788889999888877764 677889999999666642 3356888555556666655444 36789
Q ss_pred HHHHHHHHhhcc-CCCCCceeccccccCCCCccccCCCCCCCCCcccceeeCCCCC-CCCcccccChhHHHHHHHHHHHH
Q 005445 221 MLVSRFFRVYTQ-WRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP-CMNSSYNVSTSTLRIMMDEFQRG 298 (696)
Q Consensus 221 ~LL~~FF~~Ys~-WdWp~PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~P-~~Nst~NVs~sTl~vI~~Ef~RA 298 (696)
.-+.++|+..+. +=-|.-. -|.+|+.+ ..++....|..-...|..-.+.+
T Consensus 240 ~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~ 291 (364)
T 4at7_A 240 VAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVCYTAQTL 291 (364)
T ss_dssp HHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHHHHHHHH
Confidence 999999999874 3222110 13456655 46666777777777888777777
Q ss_pred HHHH
Q 005445 299 HEIC 302 (696)
Q Consensus 299 ~~Il 302 (696)
.+++
T Consensus 292 LRll 295 (364)
T 4at7_A 292 VRIL 295 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=91.54 E-value=10 Score=41.24 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=119.7
Q ss_pred CCCceeEEEecCCCCCccccHHHHHHHHHhC----C-C-CceEEeecCCCCcceEEEEEC---CeeeEEEeecccCC---
Q 005445 63 PGADIDTLCVGPRHATREEDFFGELHQMLTE----M-P-EVTELHPVPDAHVPVMKFKFS---GVSIDLLYARLSLW--- 130 (696)
Q Consensus 63 pgSDID~LcV~P~~vtr~edFF~~l~~~L~~----~-~-~V~~l~~V~~A~VPIIKf~~~---GI~iDL~fa~l~~~--- 130 (696)
-+-+.|+|+++..-.|+ .+...+.+.|.+ . + ...-...+.+|-+ ...-. .+.|=+.+......
T Consensus 108 Gd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i---~i~~~~~p~~~v~I~lTSp~~re~~ 182 (383)
T 4at7_B 108 GDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAI---VIKNTKEPPLSLTIHLTSPVVREEM 182 (383)
T ss_dssp TCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEE---EEECSSSSCCEEEEEEECHHHHHHH
T ss_pred CCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceE---EEecCCCCCeEEEEEECCcccccch
Confidence 34589999999988886 466666655543 1 1 2222334445422 22211 24455555433100
Q ss_pred -Cc--CCCCCCCchhhhcccc-hhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCcchHHHHHH
Q 005445 131 -VI--PEDLDISQDSILQNAD-EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALL 206 (696)
Q Consensus 131 -~v--pe~ldl~~d~lL~~lD-e~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfLGGIswAIL 206 (696)
.+ .+.+...|. --.|| ..|+.+|-..|-+..+............++|.+|.-.+|.-- ++-|.++++=+|
T Consensus 183 ~~~~~~~~~~~~dp--~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~----~~pL~~waLELL 256 (383)
T 4at7_B 183 EKVLAGETLSVNDP--PDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPT----WGPLRGWPLELL 256 (383)
T ss_dssp HHHHTTCCCCCCCC--TTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGG----GGGGTTHHHHHH
T ss_pred hhcccccccccCCh--hhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCC----cCCCcHhHHHHH
Confidence 00 011111111 01233 468888888888887777666676778899999997666532 245776666677
Q ss_pred HHHHHhhCCC--CCHHHHHHHHHHhhcc-CCCCC-ceeccccccCCCCccccCCCCCCCCCcccceeeCCCC--CCCCcc
Q 005445 207 VARICQLYPN--AVPSMLVSRFFRVYTQ-WRWPN-PVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAY--PCMNSS 280 (696)
Q Consensus 207 VArvCQlyPn--as~~~LL~~FF~~Ys~-WdWp~-PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMpIiTPa~--P~~Nst 280 (696)
+.+..-. ++ .+++.-+.+||+..+. +--|. | -|.+|+. |..|.+
T Consensus 257 ~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~~p-----------------------------gI~DPcEk~pt~~~~ 306 (383)
T 4at7_B 257 CEKSIGT-ANRPMGAGEALRRVLECLASGIVMPDGS-----------------------------GIYDPCEKEATDAIG 306 (383)
T ss_dssp HHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTTSC-----------------------------CCBCTTCSSCCBTTT
T ss_pred HHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCCCC-----------------------------CccCCCCCCCccccc
Confidence 7776643 33 5788999999999885 22221 2 2456676 666666
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q 005445 281 YNVSTSTLRIMMDEFQRGHEIC 302 (696)
Q Consensus 281 ~NVs~sTl~vI~~Ef~RA~~Il 302 (696)
..+.-....|..+-+.+.+++
T Consensus 307 -~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 307 -HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHH
Confidence 677777889999888888765
No 14
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=74.60 E-value=12 Score=39.53 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhhcc---------------ccCCCCceeEEEecCCCCCcc---ccHHHHHHHHHhCCCCceEEe
Q 005445 40 LYESQEEAVSREEVLGRLDQ---------------VHGPGADIDTLCVGPRHATRE---EDFFGELHQMLTEMPEVTELH 101 (696)
Q Consensus 40 l~eS~EE~~~Re~VL~~L~~---------------V~~pgSDID~LcV~P~~vtr~---edFF~~l~~~L~~~~~V~~l~ 101 (696)
-+|=.|-...-+.|++.|+. --.-..|||+|+..|.....+ ..|+..+.+.|.+.+.|+++-
T Consensus 149 ripr~ea~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l 228 (335)
T 2fmp_A 149 RIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL 228 (335)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHCTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEE
T ss_pred cEEHHHHHHHHHHHHHHHHhcCCCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeee
Confidence 45545555555556555554 112347999999888432210 157888999999999998877
Q ss_pred ecCCCCcceE-EEEE-------CCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhh
Q 005445 102 PVPDAHVPVM-KFKF-------SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQN 173 (696)
Q Consensus 102 ~V~~A~VPII-Kf~~-------~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~ 173 (696)
...+.+.-++ ++.. .|+.|||.++.-..+ .-.++.+-.+ ..
T Consensus 229 ~~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~------------------------------~~aLl~fTGS-~~ 277 (335)
T 2fmp_A 229 SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQY------------------------------YCGVLYFTGS-DI 277 (335)
T ss_dssp EECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGGH------------------------------HHHHHHHHCC-HH
T ss_pred ecCCceEEEEEEeCCcccccCCCceEEEEEEECHHHH------------------------------HHHHHHhhCC-HH
Confidence 6666643332 2221 178999998753211 0012222222 22
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCCc
Q 005445 174 FRTTLRCMRFWAKRRGVYSNVAGFL 198 (696)
Q Consensus 174 FR~~LR~IK~WAKrRGIYsn~~GfL 198 (696)
| .|.++.||++||..=|-+|..
T Consensus 278 f---nr~lR~~A~~kG~kl~e~Gl~ 299 (335)
T 2fmp_A 278 F---NKNMRAHALEKGFTINEYTIR 299 (335)
T ss_dssp H---HHHHHHHHHHTTEEECSSCEE
T ss_pred H---HHHHHHHHHHcCCcccccccc
Confidence 2 478899999999887777753
No 15
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=67.32 E-value=32 Score=36.35 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCc---ceEEE-EE-----CCeeeEEEeecccCCCcC
Q 005445 63 PGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV---PVMKF-KF-----SGVSIDLLYARLSLWVIP 133 (696)
Q Consensus 63 pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~V---PIIKf-~~-----~GI~iDL~fa~l~~~~vp 133 (696)
-..|||+|+..|..... ..++..+.+.|.+.+.|+++-....... -.+-+ .. .|+.|||.++.-..+
T Consensus 184 t~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~--- 259 (335)
T 2bcq_A 184 TCGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEF--- 259 (335)
T ss_dssp EESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCCCEEEEEEECCGGGH---
T ss_pred CCCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCCceEEEEEEECHHHH---
Confidence 34799999988865543 3688899999999998887544421111 11121 22 578999998653210
Q ss_pred CCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCc
Q 005445 134 EDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 198 (696)
Q Consensus 134 e~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfL 198 (696)
| -.++.+-.+. . -.|.++.||+++|.-=|-+|..
T Consensus 260 -----------------------g----~ALl~fTGS~-~---fnr~lR~~A~~~G~kL~e~Gl~ 293 (335)
T 2bcq_A 260 -----------------------A----CALLYFTGSA-H---FNRSMRALAKTKGMSLSEHALS 293 (335)
T ss_dssp -----------------------H----HHHHHHHCCH-H---HHHHHHHHHHHTTCEECSSCEE
T ss_pred -----------------------H----HHHHHhhCCH-H---HHHHHHHHHHHcCCCccccccc
Confidence 0 0122222221 2 2478899999999887877753
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=58.56 E-value=13 Score=32.96 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=19.1
Q ss_pred ccCCCCceeEEEecCCCCCccccHHHHHHHHHh
Q 005445 60 VHGPGADIDTLCVGPRHATREEDFFGELHQMLT 92 (696)
Q Consensus 60 V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~ 92 (696)
-++++||||++++....... +++..+ ..|.
T Consensus 46 ~~~~~SDIDl~V~~~~~~~~--~~~~~~-~~l~ 75 (111)
T 2rff_A 46 DYLDTSDIDILFVFKGIKEM--NVFDRM-YMVS 75 (111)
T ss_dssp CCCTTCCEEEEEEESSCTTC--CHHHHH-HHHG
T ss_pred CCCCCCCEEEEEEecCCCCh--hHHHHH-HHHH
Confidence 35699999999988754332 455543 3344
No 17
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=56.26 E-value=17 Score=31.98 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=19.7
Q ss_pred ccCCCCceeEEEecCCCCCccccHHHHHHHHHhC
Q 005445 60 VHGPGADIDTLCVGPRHATREEDFFGELHQMLTE 93 (696)
Q Consensus 60 V~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~ 93 (696)
-+.++||||++++.+...+. ..+..+...|.+
T Consensus 40 ~~~~~SDIDl~V~~~~~~~~--~~~~~l~~~l~~ 71 (114)
T 1no5_A 40 KAKKYSDLDLAIISEEPLDF--LARDRLKEAFSE 71 (114)
T ss_dssp CCCTTCCEEEEEECSSCCCH--HHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHHh
Confidence 45789999999988754432 112244555554
No 18
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=56.11 E-value=19 Score=34.88 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCceeEEEecCCCCCccccHHHHHHHHHhC--CCCce-EEeecCCCCcceEEEEE--CCeeeEEEeecccCCCcCCCCC
Q 005445 63 PGADIDTLCVGPRHATREEDFFGELHQMLTE--MPEVT-ELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLD 137 (696)
Q Consensus 63 pgSDID~LcV~P~~vtr~edFF~~l~~~L~~--~~~V~-~l~~V~~A~VPIIKf~~--~GI~iDL~fa~l~~~~vpe~ld 137 (696)
-..|||+|+..|. ...+.+.|.+ .+.++ ++..-.+.++-+ ++.. .|+.|||.++.-...
T Consensus 46 t~gDiDiLit~~~--------~~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~rVDl~~vp~~~f------- 109 (174)
T 1jaj_A 46 MLNDVDLLIIVPE--------KKLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTYQLDLFTALAEEK------- 109 (174)
T ss_dssp EECCEEEEEEESS--------HHHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCEEEEEEEEETTCH-------
T ss_pred CCCCEEEEEecCC--------HHHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCceEEEEEEeCHHHH-------
Confidence 4469999988773 1345566777 78887 665544554322 3332 689999998763211
Q ss_pred CCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCcCCCCCc
Q 005445 138 ISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFL 198 (696)
Q Consensus 138 l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~WAKrRGIYsn~~GfL 198 (696)
| -.++.+-.+ ..| .|.++.||++||.-=|-+|..
T Consensus 110 -------------------g----~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e~Gl~ 143 (174)
T 1jaj_A 110 -------------------P----YAIFHFTGP-VSY---LIRIRAALKKKNYKLNQYGLF 143 (174)
T ss_dssp -------------------H----HHHHHHHSC-HHH---HHHHHHHHHHTTEEEETTEEE
T ss_pred -------------------H----HHHHHhHCC-HHH---HHHHHHHHHHcCCCcCccccc
Confidence 0 011212122 122 478889999999877777754
No 19
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=55.66 E-value=51 Score=36.98 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccc---------------cCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeec
Q 005445 39 NLYESQEEAVSREEVLGRLDQV---------------HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPV 103 (696)
Q Consensus 39 ~l~eS~EE~~~Re~VL~~L~~V---------------~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V 103 (696)
+-+|=.|-...-+.|++.|+.+ -.-..|||+|+..|.. ..+.+.|.+.+.|+++-..
T Consensus 156 ~r~~~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~ 227 (575)
T 3b0x_A 156 KRRPLGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREG--------ERAVEGFVRLPQVKEVYAK 227 (575)
T ss_dssp CCEEHHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEE
T ss_pred cceeHHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhc
Confidence 4556566666666666666551 1233699999887732 2466778888888876555
Q ss_pred CCCCcceEEEEECCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHHHHHHH
Q 005445 104 PDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRF 183 (696)
Q Consensus 104 ~~A~VPIIKf~~~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~LR~IK~ 183 (696)
.+.+.-+ ++ -.|+.|||.++.-..+ | -.++.+-.+. . -.|.++.
T Consensus 228 g~~k~~~-~~-~~~~rvDl~~~~~~~~--------------------------~----~al~~~TGs~-~---~n~~lR~ 271 (575)
T 3b0x_A 228 GKERATV-FL-KNGLQVDLRVVPPESY--------------------------G----AGLQYLTGSA-A---HSIRLRA 271 (575)
T ss_dssp CSSEEEE-EE-TTSCEEEEEEECGGGH--------------------------H----HHHHHHHCCH-H---HHHHHHH
T ss_pred CCCceEE-Ec-cCCcEEEEEEECHHHH--------------------------H----HHHHHhhCCH-H---HHHHHHH
Confidence 5544322 11 1699999998753211 0 1122222222 2 2478899
Q ss_pred HHHHhcCCcCCCCCc
Q 005445 184 WAKRRGVYSNVAGFL 198 (696)
Q Consensus 184 WAKrRGIYsn~~GfL 198 (696)
||++||.-=|-+|..
T Consensus 272 ~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 272 LAQEKGLKLSEYGVF 286 (575)
T ss_dssp HHHHTTCEEETTEEE
T ss_pred HHHHcCCCcchhhcc
Confidence 999999988888865
No 20
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=44.98 E-value=70 Score=34.06 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHhhccc---------------cCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceE
Q 005445 40 LYESQEEAVSREEVLGRLDQV---------------HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTE 99 (696)
Q Consensus 40 l~eS~EE~~~Re~VL~~L~~V---------------~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~ 99 (696)
-+|=.|-....+.|++.|+.+ -.-..|||+|+..|..... ..++..+.+.|.+.+.|+.
T Consensus 153 ripr~ea~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~~ 226 (360)
T 2ihm_A 153 PVRRADAEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVLY 226 (360)
T ss_dssp CEEHHHHHHHHHHHHHHHHTTCTTCEEEECHHHHTTCSEESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEEE
T ss_pred CEEHHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCccCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCeee
Confidence 445455555555566555551 1234799999988865433 3688899999998888763
No 21
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=34.82 E-value=37 Score=28.91 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=13.3
Q ss_pred ccCCC-CceeEEEecCC
Q 005445 60 VHGPG-ADIDTLCVGPR 75 (696)
Q Consensus 60 V~~pg-SDID~LcV~P~ 75 (696)
-+.++ ||||++++.+.
T Consensus 30 ~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 30 DYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CSSSCCCSEEEEEECGG
T ss_pred CCCCCCCceEEEEEeCC
Confidence 46789 99999998875
No 22
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=28.94 E-value=34 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=13.2
Q ss_pred ccCCCCceeEEEecCCC
Q 005445 60 VHGPGADIDTLCVGPRH 76 (696)
Q Consensus 60 V~~pgSDID~LcV~P~~ 76 (696)
-++++||||++++.+..
T Consensus 38 ~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 38 EAREDSDLDLLVAFEEG 54 (98)
T ss_dssp CCCTTCCCEEEECCCSS
T ss_pred CCCCCCCEEEEEEeCCC
Confidence 45689999998877643
No 23
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=26.49 E-value=2.3e+02 Score=30.32 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcc---------------ccCCCCceeEEEecCCCCCcc-ccHHHHHHHHHhCCCCceE
Q 005445 39 NLYESQEEAVSREEVLGRLDQ---------------VHGPGADIDTLCVGPRHATRE-EDFFGELHQMLTEMPEVTE 99 (696)
Q Consensus 39 ~l~eS~EE~~~Re~VL~~L~~---------------V~~pgSDID~LcV~P~~vtr~-edFF~~l~~~L~~~~~V~~ 99 (696)
.-++=.|-...-+.|++.|+. --.-..|||+|+..|...... ..++..+.+.|.+.+.|+.
T Consensus 172 ~ripr~ea~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~ 248 (381)
T 1jms_A 172 SCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLY 248 (381)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEHHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccc
Confidence 345555555555666666554 123457999999887543211 1277788888988888743
No 24
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=24.34 E-value=98 Score=32.08 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=31.8
Q ss_pred CCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCcceEEEEE-CCeeeEEEeeccc
Q 005445 63 PGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLS 128 (696)
Q Consensus 63 pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~VPIIKf~~-~GI~iDL~fa~l~ 128 (696)
.-||||++++...... +.| .. ..-|.....+--. .++.++- ..+.| +|+.|||.|+.+.
T Consensus 57 ~~SD~Di~~vV~~~~~--~~f-~~-~~Wl~~fG~~~~~--f~~~~~~-~l~lF~Dg~riDl~l~~~~ 116 (287)
T 3jz0_A 57 QYSDIEFYIFLKHSIT--SNF-DS-SNWLFDVAPYLML--YKNEYGT-EVVIFDNLIRGEFHFLSEK 116 (287)
T ss_dssp TTCCEEEEEEECGGGT--TTC-CH-HHHHHHHCCEEEE--EECTTSC-EEEEETTSCEEEEEEEEGG
T ss_pred CccceeEEEEEcCcch--hhh-hh-HHHHHHhhhhheE--eecccce-EEEEecCCcEEEEEEeeHH
Confidence 4499999887643211 123 21 2344443332211 2233333 24555 7999999999865
No 25
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=20.33 E-value=77 Score=35.64 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHhhcc--c---------cCCCCceeEEEecCCCCCccccHHHHHHHHHhCCCCceEEeecCCCCc
Q 005445 40 LYESQEEAVSREEVLGRLDQ--V---------HGPGADIDTLCVGPRHATREEDFFGELHQMLTEMPEVTELHPVPDAHV 108 (696)
Q Consensus 40 l~eS~EE~~~Re~VL~~L~~--V---------~~pgSDID~LcV~P~~vtr~edFF~~l~~~L~~~~~V~~l~~V~~A~V 108 (696)
-+|=.|-...-+.|++.|+. + -.-..|||+|+.. +. +. + |.+.+.|+ .-.+.++
T Consensus 160 r~~~~e~~~~~~~i~~~l~~~~~~~~Gs~RR~~e~~gDiD~li~~----~~-~~----v---l~~~~~v~---~~g~~k~ 224 (578)
T 2w9m_A 160 RQSLRAGLAVAEELAGALTDLSPAPAGDVRRGLETVRAAELTVTG----TP-DD----V---LARLPELT---VQGDGVL 224 (578)
T ss_dssp SEEHHHHHHHHHHHHHHTGGGCCEECHHHHHTCSEESSEEEEEES----CH-HH----H---HHHCTTCE---EC---CE
T ss_pred CeeHHHHHHHHHHHHHHHHhCCCEEecccccCCCccCCEEEEEec----Ch-HH----H---HhcCccce---ecCCceE
Confidence 44444445555555555554 1 1234699998865 11 11 1 55667776 2223332
Q ss_pred ceEEEEECCeeeEEEeecccCCCcCCCCCCCchhhhcccchhhHhhhchhhhHHHHHHhCCChhhHHHHH-HHHHHHHHH
Q 005445 109 PVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTL-RCMRFWAKR 187 (696)
Q Consensus 109 PIIKf~~~GI~iDL~fa~l~~~~vpe~ldl~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVPn~~~FR~~L-R~IK~WAKr 187 (696)
-+ ++ .|+.|||.++.-..+ .-.++.+-. .-. |.++.||++
T Consensus 225 ~~-~~--~~~~vDl~~~~~~~~------------------------------~~al~~~TG------~~n~~~lr~~A~~ 265 (578)
T 2w9m_A 225 SG-DY--EGVPVEIACAPAEAR------------------------------GALDLLRSG------EHFAGQVQAAAQA 265 (578)
T ss_dssp EE-EE--TTEEEEEEEECTTTH------------------------------HHHHHHTSC------HHHHHHHHHHHHT
T ss_pred EE-EE--CCEEEEEEEECHHHH------------------------------HHHHHHHhh------hhHHHHHHHHHHH
Confidence 22 23 899999998763211 012222222 223 788999999
Q ss_pred hcCCcCCCCCcc
Q 005445 188 RGVYSNVAGFLG 199 (696)
Q Consensus 188 RGIYsn~~GfLG 199 (696)
||..=|-+|...
T Consensus 266 ~g~~l~~~gl~~ 277 (578)
T 2w9m_A 266 RGFTLTAGGLSR 277 (578)
T ss_dssp TTCEEETTEEEE
T ss_pred cCCCcChhhccC
Confidence 998888888653
Done!