Query 005448
Match_columns 696
No_of_seqs 193 out of 712
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 23:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 2.3E-93 4.9E-98 790.8 46.6 561 52-692 1-571 (577)
2 PF04515 Choline_transpo: Plas 100.0 2.5E-63 5.5E-68 535.4 29.7 331 323-672 2-332 (334)
3 PHA02898 virion envelope prote 65.5 25 0.00054 29.8 6.3 25 316-340 40-64 (92)
4 PHA03048 IMV membrane protein; 56.1 39 0.00084 28.8 5.9 24 317-340 40-63 (93)
5 PF12273 RCR: Chitin synthesis 55.6 10 0.00022 35.0 2.8 28 320-347 2-29 (130)
6 PHA02680 ORF090 IMV phosphoryl 54.8 86 0.0019 26.6 7.7 24 316-339 41-64 (91)
7 PF05297 Herpes_LMP1: Herpesvi 53.8 4.3 9.3E-05 41.8 0.0 34 228-262 40-73 (381)
8 PRK09697 protein secretion pro 51.3 6.2 0.00014 34.7 0.6 24 34-57 30-53 (139)
9 PF05767 Pox_A14: Poxvirus vir 44.0 76 0.0016 27.2 5.9 25 316-340 40-64 (92)
10 PRK09598 lipid A phosphoethano 37.2 5.5E+02 0.012 29.6 13.7 13 262-274 71-83 (522)
11 COG2194 Predicted membrane-ass 35.2 7.8E+02 0.017 28.7 14.4 46 227-274 31-76 (555)
12 KOG3814 Signaling protein van 33.9 1.2E+02 0.0026 33.0 6.8 34 359-392 181-215 (531)
13 PRK11560 phosphoethanolamine t 32.3 6.1E+02 0.013 29.6 13.0 32 315-346 113-144 (558)
14 PF03788 LrgA: LrgA family; I 30.9 1.1E+02 0.0024 26.7 5.1 38 337-376 27-64 (96)
15 TIGR01478 STEVOR variant surfa 29.3 61 0.0013 33.8 3.7 27 320-346 261-287 (295)
16 PTZ00370 STEVOR; Provisional 28.6 64 0.0014 33.8 3.7 27 320-346 257-283 (296)
17 PF01102 Glycophorin_A: Glycop 27.7 93 0.002 28.4 4.3 30 317-347 65-94 (122)
18 PF12798 Fer4_3: 4Fe-4S bindin 27.2 20 0.00043 20.1 -0.1 10 113-122 5-14 (15)
19 PRK10649 hypothetical protein; 26.3 3.2E+02 0.007 31.9 9.5 20 247-266 46-65 (577)
20 PRK11598 putative metal depend 23.8 1.1E+03 0.024 27.3 13.2 30 317-346 115-144 (545)
21 PF10110 GPDPase_memb: Membran 22.8 1.7E+02 0.0037 27.4 5.4 30 556-585 106-135 (149)
22 KOG4606 Uncharacterized conser 20.6 60 0.0013 28.7 1.5 38 458-501 42-79 (126)
23 PF12800 Fer4_4: 4Fe-4S bindin 20.3 40 0.00087 19.5 0.3 10 113-122 8-17 (17)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-93 Score=790.82 Aligned_cols=561 Identities=32% Similarity=0.565 Sum_probs=458.2
Q ss_pred hhhccccCCCcccccccCCCCCccCCCCCCCcccceeeecCchh-----hhhcCCCCccccccccccccccccccccccC
Q 005448 52 SSFGFNQGNPLRLTYGLDYKGNVCGDRHAGLRELELRYWLNPNQ-----VYQSGLKGSQFKLANARSICLLDCPIPAEDS 126 (696)
Q Consensus 52 ~~~a~~~G~p~rL~~g~Ds~Gn~CG~~~~d~~d~~ylyf~~p~~-----~~~~~~~t~~~~~~~~~~vCV~~CP~~~~~~ 126 (696)
+.+++.+|||.|+++|+||+||.||+++ .+++|+..+++... ....+|+ +.++||++||.+..++
T Consensus 1 ~~~~~~~g~~~r~~~~~ds~~~~cg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~cv~~cP~~~~~~ 70 (577)
T KOG1362|consen 1 AGFSIVYGDPQRLLYGYDSFGNLCGVKN--NEGIPYLGYFNAKKCSFPLLALTDCK--------SPQLCVLSCPSPQLDT 70 (577)
T ss_pred CceeEEecCccceecCCCccccccCccc--ccCCCcccccccccccchhhhhcCCC--------CCceecCCCChhhcCC
Confidence 3679999999999999999999999998 68899888765321 1122444 4689999999874432
Q ss_pred CcccccCCCcccccccccccccccCcccccCccccccccccCCCCcccccCccccccccccccccccccchhhhccCccc
Q 005448 127 LNWVCDYPEGEIRLSMDDWIDRNYDYFEFLTPEMRNSSLQLQGPCYPVVFPSVNVYWSCQFIARASNMSLKHWQQMGGVT 206 (696)
Q Consensus 127 ~~~~C~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~S~~~l~RCip~~~~~~~~~~~~~~~~~~~ 206 (696)
.+. ++++...+...+ .++++ .+.+...+...+++|++...++.|+++||.|....+.
T Consensus 71 ~~~----~~~~~~~~~~~~--c~~~~----~~~~~~~~~~~~~~cp~~~~~~~p~~~rc~p~~~~~~------------- 127 (577)
T KOG1362|consen 71 PSD----SDSNASPSGNQL--CVYNF----DPNKRITSLLLQSLCPSAPFPSAPVLHRCVPWTIQED------------- 127 (577)
T ss_pred ccc----cchhhccCccee--ecCCC----CcccccchhccCCCCCceecCCCchhccCCchhcccc-------------
Confidence 211 000000000000 00000 0111223344578999999999999999999761110
Q ss_pred ccchhhhhHHHHHHhhhhhHHHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 005448 207 INEDLLIDKSIHRTINSRSAVLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVALFNVLIISVTMF 286 (696)
Q Consensus 207 ~~~~~~~~~~i~~~l~~~~~~~~~~~~Dl~~sw~~il~~~~~ia~vls~i~l~llr~~a~~lvw~~i~~~~~~l~~~~~~ 286 (696)
.++.+. ....++++++|+..+|++++. .+.+++++|.+++.++|+.++.++|..+++++++++++.+.
T Consensus 128 ----l~~~~~-------~~~v~~~i~~~i~~sw~~i~~-~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~ 195 (577)
T KOG1362|consen 128 ----LIFFKS-------AVSVLHRIFADILRSWYTILS-LLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWF 195 (577)
T ss_pred ----eeechh-------hHHHHHHHHHHHHHhHHHHHh-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 247889999999999999997 68899999999999999999999999999999999999888
Q ss_pred eeeeeccccCCcccccccCCCCcccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005448 287 CYIKVGWIGNDAISPIIGAHDPYYHVYGREINHLRA-VTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQAL 365 (696)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~i~~~i~ll~~~~~r~rI~~ai~llk~as~~i~~~p~l 365 (696)
+|..+....+.. ..++.+ +.++.+.+++.+|+. .+|+++++.++.+++++.+|+||+++++++|+|+|++.++|++
T Consensus 196 ~~~~y~~~~~~~--~~i~~~-~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~ 272 (577)
T KOG1362|consen 196 CWFLYAILRNTK--VTIGFT-SSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPST 272 (577)
T ss_pred HHHHhhhhcccc--ceeecc-hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 887765443322 122332 245667788888888 8999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCCCCCccccCCCccccCCCcceeEEeeccchHHHHHHHHHH-HHH
Q 005448 366 MIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCNSNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFG-CYW 444 (696)
Q Consensus 366 ~~~pi~~~~~~~~~~~~w~~~~~~l~s~g~~~~~~~~~~~~~~~~~f~~~~~~~~c~~~~~~~~~~~~~~~~~lf~-~~W 444 (696)
+++|+.++++.++|+.+|+.++++++++| .. ++ .+|. |.+ . ....+.+.++++++ ++|
T Consensus 273 ~~~p~~~~~v~~~~i~~wv~~~~~l~t~~-~~-~~--gg~~--------------~~~--~-~~~~~~~~~~~vv~~l~W 331 (577)
T KOG1362|consen 273 LFPPALTFFVLLLFISLWVFVALFLVTSG-PN-SE--GGCA--------------CTY--S-GGSLRILFWLLVVGSLIW 331 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-cC--CCce--------------eec--c-CCcchhHhHHHHHHHHHH
Confidence 99999999999999999999999999999 21 11 1000 111 1 11245677788887 999
Q ss_pred HHHHHHhccceeeeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 005448 445 ATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGT 524 (696)
Q Consensus 445 ~~~fi~~~~~~~iAg~va~WYF~~~~~~~~~~~~~v~~s~~r~~~yhlGSia~GSLiiaiv~~iR~il~~i~~~~k~~~~ 524 (696)
+++|+.|++|+++||++++|||+++| +|+|..|+..|++|+++||+||+|+|||++++|+++|.++||+++++|+
T Consensus 332 t~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GSliv~iV~i~R~iL~~i~~~lk~--- 406 (577)
T KOG1362|consen 332 TSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGSLLVALVRILRVILRYIRHKLKG--- 406 (577)
T ss_pred HHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHhcc---
Confidence 99999999999999999999999999 6999999999999999999999999999999999999999999999997
Q ss_pred CCCChHHHHHHHhhhhHHhhHHHHHHhccccceeEeeecCChhhHhHHHHHHHHHhcccceeeehhhHHHHHHHHHHHHH
Q 005448 525 TPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAITGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVS 604 (696)
Q Consensus 525 ~~~n~~~~~i~~c~~c~l~cle~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~~v~~~~l~lgk~~i~ 604 (696)
.+|+..|+++||++||+||+|++++|+|||||+|+||||||||+|||+||+|++||..|++.+|.++++++|+||+.++
T Consensus 407 -~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~Nv~~vv~~d~vs~~llflgk~l~~ 485 (577)
T KOG1362|consen 407 -SQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRNVLRVVDVDLVSDFLLFLGKLLGA 485 (577)
T ss_pred -CCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhcCC---CCCCcHHH
Q 005448 605 LSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGYVVASLFFAVVEMSIDTIILSFCQDSEEHQGT---AQYAPPLL 681 (696)
Q Consensus 605 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~~ii~y~i~~~f~~v~~~~vdTifvCf~~D~e~~~g~---~~~~~~~L 681 (696)
+.++++++.++... .+.++.+++|.+..++.+|+|+++|+++++|+|||+|+||+||+|.|||+ |++|++.|
T Consensus 486 ~~~g~~g~~~l~~~-----~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs~~~p~~~~~~l 560 (577)
T KOG1362|consen 486 IGSGVAGIWLLIGR-----KDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGSPEKPQFMSEQL 560 (577)
T ss_pred HHHHHHHHHHHhcC-----CCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCCCCcceeeeHHH
Confidence 99999999887642 11134556776655555599999999999999999999999999999997 89999999
Q ss_pred HHHHHhhHhhh
Q 005448 682 METLNDQNEMQ 692 (696)
Q Consensus 682 ~~~l~~~~~~~ 692 (696)
+|.+++.++.+
T Consensus 561 ~~~~~~~~~~~ 571 (577)
T KOG1362|consen 561 LEILGRSNKAP 571 (577)
T ss_pred HHhcccccccc
Confidence 99999888643
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=2.5e-63 Score=535.39 Aligned_cols=331 Identities=35% Similarity=0.654 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCeeeecCCC
Q 005448 323 VTILMTFVMIVAILTSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIMLAIFYMFWISAALHLFSSGQIIQNNCN 402 (696)
Q Consensus 323 ~~ii~~i~~~i~ll~~~~~r~rI~~ai~llk~as~~i~~~p~l~~~pi~~~~~~~~~~~~w~~~~~~l~s~g~~~~~~~~ 402 (696)
+++++++++++.+++++++||||+++++++|+|+++++++|+++++|+++.+++++++++|+.+.++++++|+++.++.+
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCccccCCCccccCCCcceeEEeeccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeeeecccCCCCCCCCCchHHH
Q 005448 403 SNCCAYDLGLKRVNCDHCCGYRIRYTPHIAVAIFFHLFGCYWATQFFIAASSTVIAGSVASYYWARGETSPEIPLLPVVS 482 (696)
Q Consensus 403 ~~~~~~~~~f~~~~~~~~c~~~~~~~~~~~~~~~~~lf~~~W~~~fi~~~~~~~iAg~va~WYF~~~~~~~~~~~~~v~~ 482 (696)
.+.+..+ +...+.+++...+++.+|++|+++|+++|+.+++|+++||++++|||++++ +++|+.|+.+
T Consensus 82 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~--~~~~~~~~~~ 149 (334)
T PF04515_consen 82 LPFSSGS----------ISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDK--PNMPKSPVLR 149 (334)
T ss_pred CCccccc----------ccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCc--ccccchHHHH
Confidence 2111100 001244567788899999999999999999999999999999999999988 3889999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHhhhhHHhhHHHHHHhccccceeEeee
Q 005448 483 SMKRLVRYSLGSVALGSLIVSFVESVRFILESIRRKMKVFGTTPDSWYGKAAFYSSQGILRCIEWTVKSVNRNAYIMIAI 562 (696)
Q Consensus 483 s~~r~~~yhlGSia~GSLiiaiv~~iR~il~~i~~~~k~~~~~~~n~~~~~i~~c~~c~l~cle~~l~~in~~Ayi~iAi 562 (696)
|++|+++||+||+|+|||++++++++|.++++++++.++ .+|++.+++.+|++||++|+|+++||+||+||+++||
T Consensus 150 s~~~~~~~~~GSi~~gSlivaiv~~~R~~~~~~~~~~~~----~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai 225 (334)
T PF04515_consen 150 SLKRALTYHFGSICFGSLIVAIVQFLRFLLRYLRRRAKK----SQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAI 225 (334)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999875 5599999999999999999999999999999999999
Q ss_pred cCChhhHhHHHHHHHHHhcccceeeehhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcccccchhHHHHHHHHHH
Q 005448 563 TGKSFCRASSIATELIINNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWFLGY 642 (696)
Q Consensus 563 ~G~~F~~Sak~a~~Li~rn~~~~~~~~~v~~~~l~lgk~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~i~~ii~y 642 (696)
||++||+|||++++|++||+.+...++.+++.++++||+++++++++++|+++..... .+++++|++|++++++++|
T Consensus 226 ~G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~ 302 (334)
T PF04515_consen 226 YGKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSF---KNDLSYPIVPALISFFIGY 302 (334)
T ss_pred cCCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999864211 3456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhhcC
Q 005448 643 VVASLFFAVVEMSIDTIILSFCQDSEEHQG 672 (696)
Q Consensus 643 ~i~~~f~~v~~~~vdTifvCf~~D~e~~~g 672 (696)
.++++|++++++++||+|+||+||||+++.
T Consensus 303 ~i~~~f~~v~~~~vdti~vc~~~d~e~~~~ 332 (334)
T PF04515_consen 303 FISSIFMSVYSSAVDTIFVCYAEDPEMNKN 332 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999988764
No 3
>PHA02898 virion envelope protein; Provisional
Probab=65.46 E-value=25 Score=29.80 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005448 316 EINHLRAVTILMTFVMIVAILTSIA 340 (696)
Q Consensus 316 ~~~~~~~~~ii~~i~~~i~ll~~~~ 340 (696)
+.++|+.++++..+++.+.++.++.
T Consensus 40 ~~~~wRalSii~FIlgivl~lG~~i 64 (92)
T PHA02898 40 ADSALRSISIISFILAIILILGIIF 64 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999777766544
No 4
>PHA03048 IMV membrane protein; Provisional
Probab=56.14 E-value=39 Score=28.77 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 005448 317 INHLRAVTILMTFVMIVAILTSIA 340 (696)
Q Consensus 317 ~~~~~~~~ii~~i~~~i~ll~~~~ 340 (696)
.++|+.++++..+++.+.++-++.
T Consensus 40 ~~~wRalsii~FIlgivl~lG~~i 63 (93)
T PHA03048 40 VTVWRALSGIAFVLGIVMTIGMLI 63 (93)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998777665443
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.62 E-value=10 Score=35.00 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 320 LRAVTILMTFVMIVAILTSIAIIRRIIM 347 (696)
Q Consensus 320 ~~~~~ii~~i~~~i~ll~~~~~r~rI~~ 347 (696)
|.++++++.++.++++++++..|||.|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555666666777663
No 6
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=54.77 E-value=86 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 005448 316 EINHLRAVTILMTFVMIVAILTSI 339 (696)
Q Consensus 316 ~~~~~~~~~ii~~i~~~i~ll~~~ 339 (696)
..++|+.++++..+++.+.++.++
T Consensus 41 ~~~~wRalSii~FIlG~vl~lGil 64 (91)
T PHA02680 41 TDYVWRALSVTCFIVGAVLLLGLF 64 (91)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999877666543
No 7
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.79 E-value=4.3 Score=41.81 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 005448 228 LKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIR 262 (696)
Q Consensus 228 ~~~~~~Dl~~sw~~il~~~~~ia~vls~i~l~llr 262 (696)
+--+++|+..+.-..+- ++++-+++-.+.++++|
T Consensus 40 ~~iimsd~t~~a~~vl~-sfAvvliiIIiIImlF~ 73 (381)
T PF05297_consen 40 FFIIMSDLTQGALTVLY-SFAVVLIIIIIIIMLFK 73 (381)
T ss_dssp -----------------------------------
T ss_pred HHHHHhccccchHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44456777666655553 44444444444444444
No 8
>PRK09697 protein secretion protein GspB; Provisional
Probab=51.28 E-value=6.2 Score=34.71 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhccc
Q 005448 34 DVAFLVIFIAFWVAMIVNSSFGFN 57 (696)
Q Consensus 34 Dv~clllF~~f~~gm~~i~~~a~~ 57 (696)
=++|+++..+|..||+.+|.||.+
T Consensus 30 ~Vi~L~~~~L~~AG~~~~GGYA~Q 53 (139)
T PRK09697 30 YVICLLLICLWFAGMVLVGGYARQ 53 (139)
T ss_pred HHHHHHHHHHHHhcceeechhHHH
Confidence 478999999999999999999976
No 9
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=44.01 E-value=76 Score=27.19 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005448 316 EINHLRAVTILMTFVMIVAILTSIA 340 (696)
Q Consensus 316 ~~~~~~~~~ii~~i~~~i~ll~~~~ 340 (696)
..++|+.++++..+++.+.++.++.
T Consensus 40 ~~~~wRalSii~FI~giil~lG~~i 64 (92)
T PF05767_consen 40 TDYTWRALSIICFILGIILTLGIVI 64 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999998777765443
No 10
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=37.23 E-value=5.5e+02 Score=29.62 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=7.5
Q ss_pred HHhhhHHHHHHHH
Q 005448 262 RHFVVAMPWITVA 274 (696)
Q Consensus 262 r~~a~~lvw~~i~ 274 (696)
|+..+++.++.++
T Consensus 71 ~~~~k~~~~~l~~ 83 (522)
T PRK09598 71 RRLMRLSAIVFSL 83 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 6677776544443
No 11
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=35.20 E-value=7.8e+02 Score=28.68 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005448 227 VLKRYMADIGKSWPVLIVCGGLLPLFLSVIWLLMIRHFVVAMPWITVA 274 (696)
Q Consensus 227 ~~~~~~~Dl~~sw~~il~~~~~ia~vls~i~l~llr~~a~~lvw~~i~ 274 (696)
.+.+...-....+.... ++..++++++++++....+...+-++..+
T Consensus 31 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~k~~~~~ 76 (555)
T COG2194 31 FFLQVFLINSLDLSFSF--SFLLALVFAFLLLLLLLSFPRLLKPLAGV 76 (555)
T ss_pred HHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333244333 45667777888777776666655444443
No 12
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=33.93 E-value=1.2e+02 Score=33.02 Aligned_cols=34 Identities=6% Similarity=0.514 Sum_probs=24.4
Q ss_pred HHHhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHhh
Q 005448 359 VGEVQALMIF-PIIPYIMLAIFYMFWISAALHLFS 392 (696)
Q Consensus 359 i~~~p~l~~~-pi~~~~~~~~~~~~w~~~~~~l~s 392 (696)
..+||.++++ .++++++.++.+++|++..+.+..
T Consensus 181 ~A~mPRvf~~RAlll~LV~~~~fayWLFYiVri~~ 215 (531)
T KOG3814|consen 181 MADMPRVFVVRALLLVLVFLIVFAYWLFYIVRILD 215 (531)
T ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4589999877 455666666778899887776543
No 13
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=32.32 E-value=6.1e+02 Score=29.56 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 315 REINHLRAVTILMTFVMIVAILTSIAIIRRII 346 (696)
Q Consensus 315 ~~~~~~~~~~ii~~i~~~i~ll~~~~~r~rI~ 346 (696)
++...++-...+++++....+-.++.+|.||+
T Consensus 113 ~Ea~~lls~~~~~~~l~~gvlP~~~i~~~~i~ 144 (558)
T PRK11560 113 DLSKEVVGLHFILWLVAVSALPLILIWNNRCR 144 (558)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444444333334444455553
No 14
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=30.95 E-value=1.1e+02 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHH
Q 005448 337 TSIAIIRRIIMATSVLKVAAKIVGEVQALMIFPIIPYIML 376 (696)
Q Consensus 337 ~~~~~r~rI~~ai~llk~as~~i~~~p~l~~~pi~~~~~~ 376 (696)
.+...+|+++. +-++.+++.+-++-.++++|....++.
T Consensus 27 ~~~L~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VGi~~ 64 (96)
T PF03788_consen 27 FLLLMFKIVKL--EWIEPAANFLLKNMALFFVPAGVGIME 64 (96)
T ss_pred HHHHHcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334888886 788999999999999999998765443
No 15
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.34 E-value=61 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 320 LRAVTILMTFVMIVAILTSIAIIRRII 346 (696)
Q Consensus 320 ~~~~~ii~~i~~~i~ll~~~~~r~rI~ 346 (696)
+-+.+++++++++++++++++++||=+
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677888888888877777777643
No 16
>PTZ00370 STEVOR; Provisional
Probab=28.61 E-value=64 Score=33.76 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 320 LRAVTILMTFVMIVAILTSIAIIRRII 346 (696)
Q Consensus 320 ~~~~~ii~~i~~~i~ll~~~~~r~rI~ 346 (696)
+-+.+++++++++++++++++++||=+
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677888888888887777777644
No 17
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.67 E-value=93 Score=28.44 Aligned_cols=30 Identities=13% Similarity=-0.019 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 317 INHLRAVTILMTFVMIVAILTSIAIIRRIIM 347 (696)
Q Consensus 317 ~~~~~~~~ii~~i~~~i~ll~~~~~r~rI~~ 347 (696)
..++.++|++..+++ +++++.+++|||+|-
T Consensus 65 ~i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIG-IILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 334455555555544 334555666666664
No 18
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=27.23 E-value=20 Score=20.11 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.1
Q ss_pred cccccccccc
Q 005448 113 SICLLDCPIP 122 (696)
Q Consensus 113 ~vCV~~CP~~ 122 (696)
+.||+.||+.
T Consensus 5 ~~C~~~Cp~~ 14 (15)
T PF12798_consen 5 GACVEVCPTG 14 (15)
T ss_pred hHHHHHhcCC
Confidence 4699999974
No 19
>PRK10649 hypothetical protein; Provisional
Probab=26.25 E-value=3.2e+02 Score=31.93 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 005448 247 GLLPLFLSVIWLLMIRHFVV 266 (696)
Q Consensus 247 ~~ia~vls~i~l~llr~~a~ 266 (696)
+-=++++|.+|+..+-.+++
T Consensus 46 ~~~~~~~~~~~~~~~~l~p~ 65 (577)
T PRK10649 46 FRDALLFSSLWLIPVFLFPR 65 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 34456777788776644444
No 20
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=23.81 E-value=1.1e+03 Score=27.33 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005448 317 INHLRAVTILMTFVMIVAILTSIAIIRRII 346 (696)
Q Consensus 317 ~~~~~~~~ii~~i~~~i~ll~~~~~r~rI~ 346 (696)
...++-...+++++..-++-.++.+|.||+
T Consensus 115 a~~l~s~~~~~~~l~~gvlP~~~~~~~~i~ 144 (545)
T PRK11598 115 SFALMTPQMLLWLGLSGVLPALIACWIKIR 144 (545)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333434444444444333333444455553
No 21
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=22.82 E-value=1.7e+02 Score=27.43 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=25.2
Q ss_pred ceeEeeecCChhhHhHHHHHHHHHhcccce
Q 005448 556 AYIMIAITGKSFCRASSIATELIINNILRI 585 (696)
Q Consensus 556 Ayi~iAi~G~~F~~Sak~a~~Li~rn~~~~ 585 (696)
+.-.+.+.++++.+|-|++|++.++|..+.
T Consensus 106 ~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 106 VLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 445568899999999999999998887663
No 22
>KOG4606 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=60 Score=28.66 Aligned_cols=38 Identities=21% Similarity=0.498 Sum_probs=23.9
Q ss_pred eeeeeeeecccCCCCCCCCCchHHHHHHHHHhhhhhhHHHHHHH
Q 005448 458 AGSVASYYWARGETSPEIPLLPVVSSMKRLVRYSLGSVALGSLI 501 (696)
Q Consensus 458 Ag~va~WYF~~~~~~~~~~~~~v~~s~~r~~~yhlGSia~GSLi 501 (696)
-|+++.|||.++. +.-+-|...|++.- -+=++|+-.|+
T Consensus 42 ~gaigawywl~dp---et~~vp~~~sLw~H---p~FTi~~~tLi 79 (126)
T KOG4606|consen 42 TGAIGAWYWLIDP---ETQKVPFFTSLWNH---PFFTISFITLI 79 (126)
T ss_pred HHhhhhhhhhcCc---ceeeeehHHHHhcC---ccHHHHHHHHH
Confidence 4788999999976 23346777786643 23345544443
No 23
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=20.27 E-value=40 Score=19.48 Aligned_cols=10 Identities=30% Similarity=0.777 Sum_probs=7.6
Q ss_pred cccccccccc
Q 005448 113 SICLLDCPIP 122 (696)
Q Consensus 113 ~vCV~~CP~~ 122 (696)
..|++.||++
T Consensus 8 ~~C~~~Cp~~ 17 (17)
T PF12800_consen 8 GSCVDVCPTQ 17 (17)
T ss_dssp SSSTTTSTT-
T ss_pred chHHhhccCC
Confidence 4699999963
Done!