Query 005448
Match_columns 696
No_of_seqs 193 out of 712
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 01:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0i_A Arsenate reductase; str 15.1 1E+02 0.0035 26.5 3.2 32 559-590 5-36 (119)
2 3fz4_A Putative arsenate reduc 13.9 77 0.0026 27.3 2.0 31 559-589 4-34 (120)
3 3l78_A Regulatory protein SPX; 12.9 96 0.0033 26.6 2.3 31 559-589 1-31 (120)
4 2lqo_A Putative glutaredoxin R 10.8 1.1E+02 0.0038 25.0 1.9 30 560-589 6-35 (92)
5 3rdw_A Putative arsenate reduc 10.0 1.6E+02 0.0053 25.4 2.7 30 560-589 7-36 (121)
6 2ks1_B Epidermal growth factor 10.0 2E+02 0.0069 20.3 2.7 13 332-344 26-38 (44)
7 3gkx_A Putative ARSC family re 9.3 1.4E+02 0.0048 25.6 2.1 31 559-589 5-35 (120)
8 1sop_A Mini-collagen; collagen 9.3 77 0.0026 19.5 0.3 9 113-121 9-17 (26)
9 2l2t_A Receptor tyrosine-prote 8.9 2.3E+02 0.008 20.0 2.7 13 332-344 25-37 (44)
10 4hyg_A Putative uncharacterize 8.7 4.2E+02 0.014 26.6 5.4 48 345-393 127-175 (301)
No 1
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=15.09 E-value=1e+02 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.2
Q ss_pred EeeecCChhhHhHHHHHHHHHhcccceeeehh
Q 005448 559 MIAITGKSFCRASSIATELIINNILRIGRVNV 590 (696)
Q Consensus 559 ~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~~ 590 (696)
++-|||.+-|..+++|.+++.+++.....++.
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di 36 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKY 36 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCEEECH
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEEe
Confidence 47799999999999999999999876655553
No 2
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=13.94 E-value=77 Score=27.32 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=26.6
Q ss_pred EeeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 559 MIAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 559 ~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
++-|||.+-|..+++|.+++.+++.....++
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~d 34 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAID 34 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999999999987665554
No 3
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=12.89 E-value=96 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=26.0
Q ss_pred EeeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 559 MIAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 559 ~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
|+-|||.+-|..+++|-.++.+++.....++
T Consensus 1 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~d 31 (120)
T 3l78_A 1 MVTLFLSPSCTSCRKARAWLNRHDVVFQEHN 31 (120)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4678999999999999999999987665544
No 4
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=10.77 E-value=1.1e+02 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.6
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
+-||+++.|.-+++|-+++.+++.....+|
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~id 35 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDEVD 35 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEEEE
Confidence 568888888888888889999987765444
No 5
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=10.01 E-value=1.6e+02 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.8
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
+-|||.+-|..+++|.+++.+++..+..++
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 36 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVVL 36 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEe
Confidence 569999999999999999999987665554
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.99 E-value=2e+02 Score=20.29 Aligned_cols=13 Identities=31% Similarity=0.439 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 005448 332 IVAILTSIAIIRR 344 (696)
Q Consensus 332 ~i~ll~~~~~r~r 344 (696)
++.+.+.+++|+|
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3444444555544
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=9.33 E-value=1.4e+02 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=26.2
Q ss_pred EeeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 559 MIAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 559 ~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
++-|||.+-|..+++|.+++.+++.....++
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 35 (120)
T 3gkx_A 5 KTLFLQYPACSTCQKAKKWLIENNIEYTNRL 35 (120)
T ss_dssp CCEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEe
Confidence 3679999999999999999999987665544
No 8
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=9.25 E-value=77 Score=19.47 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=7.0
Q ss_pred ccccccccc
Q 005448 113 SICLLDCPI 121 (696)
Q Consensus 113 ~vCV~~CP~ 121 (696)
+.||.+||.
T Consensus 9 tqCvpsCp~ 17 (26)
T 1sop_A 9 AQCVPTCPQ 17 (26)
T ss_dssp TCCCTTSCS
T ss_pred ccccCCCCc
Confidence 459999985
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.95 E-value=2.3e+02 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 005448 332 IVAILTSIAIIRR 344 (696)
Q Consensus 332 ~i~ll~~~~~r~r 344 (696)
++.+.+.+++|+|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3444444555544
No 10
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=8.74 E-value=4.2e+02 Score=26.61 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHH-HHHHHHHHHHHHHHHHHHHhhc
Q 005448 345 IIMATSVLKVAAKIVGEVQALMIFPII-PYIMLAIFYMFWISAALHLFSS 393 (696)
Q Consensus 345 I~~ai~llk~as~~i~~~p~l~~~pi~-~~~~~~~~~~~w~~~~~~l~s~ 393 (696)
++.+--++....-++-....-.+ |.+ ...++.++=++|++-.=++.+-
T Consensus 127 id~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtL 175 (301)
T 4hyg_A 127 IDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITL 175 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHH
Confidence 66665556655555555421122 332 3334455667888876666553
Done!