Query 005448
Match_columns 696
No_of_seqs 193 out of 712
Neff 7.7
Searched_HMMs 13730
Date Tue Mar 26 01:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005448.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005448hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ea1 c.47.1.12 (A:1-114) Re 11.4 58 0.0043 25.7 2.5 32 559-590 1-32 (114)
2 d2axti1 f.23.37.1 (I:1-35) Pho 10.8 58 0.0043 19.9 1.7 15 49-63 16-30 (35)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 8.7 76 0.0056 24.9 2.3 30 561-590 3-32 (114)
4 d1nm3a1 c.47.1.1 (A:166-239) C 7.4 94 0.0069 22.0 2.1 29 560-588 7-35 (74)
5 d1sopa_ g.71.1.1 (A:) Mini-col 6.7 55 0.004 18.2 0.2 6 114-119 5-10 (26)
6 d1r7ha_ c.47.1.1 (A:) Glutared 6.2 1.4E+02 0.01 20.9 2.5 30 560-589 3-32 (74)
7 d1ijda_ f.3.1.1 (A:) Light-har 5.8 1.2E+02 0.0089 19.8 1.6 13 491-503 19-31 (46)
8 d1h75a_ c.47.1.1 (A:) Glutared 5.5 1.6E+02 0.012 20.7 2.5 30 560-589 3-32 (76)
9 d1j9ba_ c.47.1.12 (A:) Arsenat 5.2 1.7E+02 0.013 23.5 2.8 30 560-589 2-31 (138)
10 d1fxra_ d.58.1.4 (A:) Ferredox 4.5 70 0.0051 22.2 -0.3 11 112-122 47-57 (64)
No 1
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=11.36 E-value=58 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=27.0
Q ss_pred EeeecCChhhHhHHHHHHHHHhcccceeeehh
Q 005448 559 MIAITGKSFCRASSIATELIINNILRIGRVNV 590 (696)
Q Consensus 559 ~iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~~ 590 (696)
|+-+||.+=|.++|+|.+.+..|+..+...+.
T Consensus 1 Mi~ly~~~~C~~~rka~~~L~~~~i~~~~~d~ 32 (114)
T d1z3ea1 1 MVTLYTSPSCTSCRKARAWLEEHEIPFVERNI 32 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEee
Confidence 45689999999999999999999987666553
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.75 E-value=58 Score=19.92 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=11.4
Q ss_pred HHHhhhccccCCCcc
Q 005448 49 IVNSSFGFNQGNPLR 63 (696)
Q Consensus 49 ~~i~~~a~~~G~p~r 63 (696)
+.+-+++|..+||.|
T Consensus 16 v~lFiFGFLSnDP~R 30 (35)
T d2axti1 16 VLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHhhccCCCCC
Confidence 345578889999987
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.72 E-value=76 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=26.1
Q ss_pred eecCChhhHhHHHHHHHHHhcccceeeehh
Q 005448 561 AITGKSFCRASSIATELIINNILRIGRVNV 590 (696)
Q Consensus 561 Ai~G~~F~~Sak~a~~Li~rn~~~~~~~~~ 590 (696)
-|||.+=|.++|+|.+++..|+..+..++.
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~~idy 32 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYDFHDY 32 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeEEEEc
Confidence 489999999999999999999988766664
No 4
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=7.44 E-value=94 Score=21.95 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=18.6
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeee
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRV 588 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~ 588 (696)
|-||+++.|.=+++|-+|+.+++.....+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~~~~ 35 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSFEEI 35 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCeEEE
Confidence 34666666666666667888877655433
No 5
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=6.68 E-value=55 Score=18.17 Aligned_cols=6 Identities=33% Similarity=1.531 Sum_probs=3.3
Q ss_pred cccccc
Q 005448 114 ICLLDC 119 (696)
Q Consensus 114 vCV~~C 119 (696)
|||.+|
T Consensus 5 vcvaqc 10 (26)
T d1sopa_ 5 VCVAQC 10 (26)
T ss_dssp TTTTCC
T ss_pred chhhhc
Confidence 555555
No 6
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=6.20 E-value=1.4e+02 Score=20.88 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=22.3
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
+-+|+++.|.-+++|-+++.+++......+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~ 32 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGLAYNTVD 32 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCceEEEE
Confidence 457788888888888888888887664444
No 7
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=5.83 E-value=1.2e+02 Score=19.76 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHH
Q 005448 491 SLGSVALGSLIVS 503 (696)
Q Consensus 491 hlGSia~GSLiia 503 (696)
-+||+|.+|+++-
T Consensus 19 ~LgsVav~s~~VH 31 (46)
T d1ijda_ 19 MLGAVAITALLVH 31 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999763
No 8
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=5.46 E-value=1.6e+02 Score=20.70 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=22.0
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
+-+|+++.|.-+++|-+++.+++.....++
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~i~y~~~~ 32 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRGFDFEMIN 32 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHhcCceeEEEe
Confidence 457777778878888888888887655544
No 9
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=5.23 E-value=1.7e+02 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=25.7
Q ss_pred eeecCChhhHhHHHHHHHHHhcccceeeeh
Q 005448 560 IAITGKSFCRASSIATELIINNILRIGRVN 589 (696)
Q Consensus 560 iAi~G~~F~~Sak~a~~Li~rn~~~~~~~~ 589 (696)
+-+|+.+=|..+|+|.+++..|+..+..++
T Consensus 2 i~iY~~p~Cs~srkal~~L~~~~i~~~~id 31 (138)
T d1j9ba_ 2 ITIYHNPACGTSRNTLEMIRNSGTEPTIIL 31 (138)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEEC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 357899999999999999999998766665
No 10
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}
Probab=4.54 E-value=70 Score=22.17 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=9.4
Q ss_pred ccccccccccc
Q 005448 112 RSICLLDCPIP 122 (696)
Q Consensus 112 ~~vCV~~CP~~ 122 (696)
-+.|++.||+.
T Consensus 47 c~~c~~~CP~~ 57 (64)
T d1fxra_ 47 VEEAMDTCPVQ 57 (64)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCCcc
Confidence 56899999986
Done!