BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005451
(696 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 465 LAHCTAGGCASVATSFIFTPSERIKQQMQVG---------SRYHNCWNALVGIIKNGGLH 515
L AGG A+ + P ER+K +QV +Y + +V I K G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 516 SLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQ--PNTIETLICGGVAGSTAA 573
S + G A + R P + F + KQ+ L + Q L GG AG+T+
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 127
Query: 574 LFTTPFDVVKTRLQTQIPGSTSQ--YSSVYHALQEIGKREGLKGLYRGL---IPRLVMYM 628
F P D +TRL + +Q ++ + + + +I K +GL+GLY+G + +++Y
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187
Query: 629 SQGALFFASYEFFKGV 644
A +F Y+ KG+
Sbjct: 188 ---AAYFGVYDTAKGM 200
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 559 IETLICGGVAGSTAALFTTPFDVVKTRLQTQIPG----STSQYSSVYHALQEIGKREGLK 614
++ + GGVA + + P + VK LQ Q + QY + + I K +G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 615 GLYRGLIPRLVMYMSQGALFFASYEFFKGVF 645
+RG + ++ Y AL FA + +K +F
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIF 98
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 377 AGALAGVFVSLC-LHPVDTVKTVIQS---CHTEQKSIVYIGR---SIVSERGLTGLYRGX 429
+G AG SLC ++P+D +T + + Q+ +G I GL GLY+G
Sbjct: 118 SGGAAGA-TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 430 XXXXXXXXXXXXVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIK 489
Y Y++ KG +LP PK H + + + P + ++
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKG-MLPD-PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234
Query: 490 QQMQVGSRYH----------NCWNALVGIIKNGGLHSLYAG-WGAVLCRNVPHSIVKFYT 538
++M + S +CW I K+ G + + G W VL R + + V
Sbjct: 235 RRMMMQSGRKGADIMYTGTVDCWRK---IAKDEGPKAFFKGAWSNVL-RGMGGAFV-LVL 289
Query: 539 YESLKQMM 546
Y+ +K+ +
Sbjct: 290 YDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 107/289 (37%), Gaps = 32/289 (11%)
Query: 376 FAGA-LAGVFVSLCLHPVDTVKTVIQ-----------SCHTEQKSIVYIGRSIVSERGLT 423
F GA A L P+DT K +Q + + + ++ ++V G
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 424 GLYRGXXXXXXXXXXXXXVYAFTYESVKGALLP---HLPKEFHSLAHCTAGGCASVATSF 480
LY G V Y+SVK H LA T G A
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA---- 120
Query: 481 IFTPSERIKQQMQV------GSRYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIV 534
+ P++ +K + Q G RY + A I + G+ L+ G + RN +
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 535 KFYTYESLKQMMLPS-LKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQIPGS 593
+ TY+ +K +L + L P + AG + +P DVVKTR G
Sbjct: 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFG---AGFCTTVIASPVDVVKTRYMNSALG- 236
Query: 594 TSQYSSVYHALQEIGKREGLKGLYRGLIPRLVMYMSQGALFFASYEFFK 642
QY S H + ++EG + Y+G +P + S + F +YE K
Sbjct: 237 --QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 13/197 (6%)
Query: 373 EHA------FAGALAGVFVSLCLHPVDTVKTVIQS-----CHTEQKSIVYIGRSIVSERG 421
EHA AG+ G P D VK Q+ +S V ++I E G
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159
Query: 422 LTGLYRGXXXXXXXXXXXXXVYAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFI 481
+ GL++G TY+ +K LL H T+ A T+ I
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVI 219
Query: 482 FTPSERIKQQMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFYTY 539
+P + +K + + +YH+ + + +++ G + Y G+ R ++V F TY
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 540 ESLKQMMLPSLKPGAQP 556
E LK+ ++ + + P
Sbjct: 280 EQLKRALMAAYQSREAP 296
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 562 LICGGVAGSTAALFTTPFDVVKTRLQTQ-------IPGSTSQYSSVYHALQEIGKREGLK 614
+ G A A L T P D K RLQ Q +++QY V + + + EG +
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 615 GLYRGLIPRLVMYMSQGALFFASYEFFKGVFS 646
LY GL+ L MS ++ Y+ K ++
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT 96
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 161 STFWTFLRSGASLSNDTCVWGLASAGIPYQL 191
++ WTFL++G L +D C++G A +QL
Sbjct: 28 ASVWTFLKAGDHLISDDCLYGCTHALFEHQL 58
>pdb|1WXR|A Chain A, Crystal Structure Of Heme Binding Protein, An
Autotransporter Hemoglobine Protease From Pathogenic
Escherichia Coli
Length = 1048
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
>pdb|3AK5|A Chain A, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|B Chain B, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|C Chain C, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
pdb|3AK5|D Chain D, Hemoglobin Protease (Hbp) Passenger Missing Domain-2
Length = 975
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 338 ENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVSLCLHPV 392
EN+ N D+N + ++FH+P+ +K +A GA+AG ++ +PV
Sbjct: 86 ENRYNIVDRN---NAPSLDFHAPRLDKLVTEVAPTAVTAQGAVAGAYLDKERYPV 137
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 490 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 549
Query: 664 EDDVV 668
E DV+
Sbjct: 550 ELDVL 554
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 609 KREGLKGLYRGLIPRLVMY-----MSQGALFFASYEFFKGVFSLEVPHLSTLRIQHKQTE 663
+R+ LK R +IP L Y S+G + ++ +F L +PHL L+
Sbjct: 491 RRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA 550
Query: 664 EDDVV 668
E DV+
Sbjct: 551 ELDVL 555
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 278 TTKSLLSDYFLKDVSDMKEDCDVTRQPCSSLCADYCINSVASSNGTCEKCR 328
+ +SL S+ DM ++ T++ CAD I ++ S N C CR
Sbjct: 27 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCR 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,056,900
Number of Sequences: 62578
Number of extensions: 742678
Number of successful extensions: 1779
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1761
Number of HSP's gapped (non-prelim): 19
length of query: 696
length of database: 14,973,337
effective HSP length: 106
effective length of query: 590
effective length of database: 8,340,069
effective search space: 4920640710
effective search space used: 4920640710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)