Query 005451
Match_columns 696
No_of_seqs 450 out of 2210
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 6.9E-51 2.4E-55 430.8 20.2 267 374-646 4-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.7E-50 9.1E-55 424.6 21.9 272 369-645 5-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 2.3E-39 7.7E-44 342.6 10.2 266 232-548 9-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 5.3E-38 1.8E-42 330.7 10.3 266 231-545 14-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 11.0 2.1E+02 0.007 23.9 3.6 35 612-646 33-67 (81)
6 1pp9_G Ubiquinol-cytochrome C 7.3 3.3E+02 0.011 22.6 3.4 36 611-646 32-67 (81)
7 3f2e_A SIRV coat protein; four 6.7 2.2E+02 0.0077 23.5 2.0 35 594-628 5-43 (100)
8 2a3d_A Protein (de novo three- 6.0 2.9E+02 0.0099 21.4 2.2 28 390-417 9-36 (73)
9 3ro3_B Minsc, peptide of prote 5.3 99 0.0034 19.3 -0.6 12 190-201 6-17 (22)
10 3vjj_A P9-1; 3.00A {Rice black 4.9 2.8E+02 0.0097 28.4 2.0 47 571-628 274-320 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.9e-51 Score=430.80 Aligned_cols=267 Identities=22% Similarity=0.319 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCC-----------CCCcHHHHHHHHHhhcCccccccCcHHHHHhhhhhhhh
Q 005451 374 HAFAGALAGVFVSLCLHPVDTVKTVIQSCHT-----------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAV 442 (696)
Q Consensus 374 ~~lAG~vAG~is~li~~PlD~IKtRlQ~~~~-----------~~~s~~~~ik~I~r~eG~rGLYRGl~~tllr~vp~sai 442 (696)
+++||++||+++.++++|||+||+|+|++.. .++++++++++|+++||++|||||+.+++++.+|..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999998753 47899999999999999999999999999999999999
Q ss_pred hhhhhHhhhcccCCCCCCccchHHHHHHHHHHHHhhhhhcchhhhhhhhhhccc------CCCCHHHHHHHHHHcCCccc
Q 005451 443 YAFTYESVKGALLPHLPKEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS------RYHNCWNALVGIIKNGGLHS 516 (696)
Q Consensus 443 ~f~~Ye~lK~~l~~~~~~~~~~~~~~laG~lAg~va~~vt~PlDvIKtRlQ~~~------~y~~~~~~l~~I~r~eGirg 516 (696)
+|.+||.+|+.+.+... .......+++|++||+++.++++|+|+||+|+|++. .|.++++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 99999999998865422 356678999999999999999999999999999875 58999999999999999999
Q ss_pred cccccccccccccccchhhHhhHHHHHHhhcCCCCCCCCCChhHHHHHHHHHhhhhhhhcccHHHHHHHHHhcCCCCCCC
Q 005451 517 LYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQIPGSTSQ 596 (696)
Q Consensus 517 LYrG~~p~llr~~p~~ai~f~~YE~lk~~l~~~~~~~~~~~~~~~~laG~lAG~~a~~it~PlDvVKTRlQ~q~~~~~~~ 596 (696)
||||+.|+++|.+|+.+++|.+||.+|+.+.+.. .........+++|++||++++++++|+||||+|||++. ...
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~---~~~ 237 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA---LGQ 237 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---SSS
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc---ccc
Confidence 9999999999999999999999999999987542 12345678899999999999999999999999999973 346
Q ss_pred CCcHHHHHHHHHHhhCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005451 597 YSSVYHALQEIGKREGLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVFS 646 (696)
Q Consensus 597 y~gv~~~~r~I~r~EGi~GLYRGl~~~llr~vp~~al~f~~YE~lk~~l~ 646 (696)
|.++++|+++|+++||++|||||+.++++|.+|..+++|.+||.+|+.+.
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.7e-50 Score=424.59 Aligned_cols=272 Identities=21% Similarity=0.306 Sum_probs=238.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCC--------CCCcHHHHHHHHHhhcCccccccCcHHHHHhhhhhh
Q 005451 369 LAKQEHAFAGALAGVFVSLCLHPVDTVKTVIQSCHT--------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPIS 440 (696)
Q Consensus 369 l~~~~~~lAG~vAG~is~li~~PlD~IKtRlQ~~~~--------~~~s~~~~ik~I~r~eG~rGLYRGl~~tllr~vp~s 440 (696)
++....++||++||+++.++++|+|+||||||++.. .++++++++++|+++||++|||||+.+++++.+|.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456789999999999999999999999999998642 478999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhccc-CCCCCCc---cchHHHHHHHHHHHHhhhhhcchhhhhhhhhhccc-------CCCCHHHHHHHHH
Q 005451 441 AVYAFTYESVKGAL-LPHLPKE---FHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGII 509 (696)
Q Consensus 441 ai~f~~Ye~lK~~l-~~~~~~~---~~~~~~~laG~lAg~va~~vt~PlDvIKtRlQ~~~-------~y~~~~~~l~~I~ 509 (696)
+++|.+||.+|+.+ ....... ......+++|++||+++.++++|+|+||+|+|++. .|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999854 3221111 23467899999999999999999999999999863 4789999999999
Q ss_pred HcCCccccccccccccccccccchhhHhhHHHHHHhhcCCCCCCCCCChhHHHHHHHHHhhhhhhhcccHHHHHHHHHhc
Q 005451 510 KNGGLHSLYAGWGAVLCRNVPHSIVKFYTYESLKQMMLPSLKPGAQPNTIETLICGGVAGSTAALFTTPFDVVKTRLQTQ 589 (696)
Q Consensus 510 r~eGirgLYrG~~p~llr~~p~~ai~f~~YE~lk~~l~~~~~~~~~~~~~~~~laG~lAG~~a~~it~PlDvVKTRlQ~q 589 (696)
++||++|||||+.|+++|.+|+.+++|.+||.+|+.+.+. ........+++|++||++++++++|+||||+|||++
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999987543 234567889999999999999999999999999987
Q ss_pred CCC--CCCCCCcHHHHHHHHHHhhCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005451 590 IPG--STSQYSSVYHALQEIGKREGLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVF 645 (696)
Q Consensus 590 ~~~--~~~~y~gv~~~~r~I~r~EGi~GLYRGl~~~llr~vp~~al~f~~YE~lk~~l 645 (696)
... ....|.++++|+++|+++||++|||||+.++++|. +..+++|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 422 23479999999999999999999999999999996 56899999999998753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=342.57 Aligned_cols=266 Identities=21% Similarity=0.295 Sum_probs=224.3
Q ss_pred CcccccccCCCCCCCCCCCcccCCCCccccCCCcccccchhc----ccccccCCchhHHHHHHHhhhhccCC---ccccc
Q 005451 232 CAGASISGDTLSPASKPATEDHNKSDLSKSKGQSSCFNAKLM----MSTRTTKSLLSDYFLKDVSDMKEDCD---VTRQP 304 (696)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~----~~~~~~~~l~~~~~l~~~~~i~~~~G---l~RGl 304 (696)
+.|.+++...++| +|-+|+..|.++.... .......+ +++++++|++.+| ||||+
T Consensus 9 ~~ag~~~~~~~~P-------------ld~iKtrlQ~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~eG~~glyrG~ 70 (303)
T 2lck_A 9 GTAACIADLITFP-------------LDTAKVRLQIQGESQGLVRTAASAQYRG-----VLGTILTMVRTEGPRSLYNGL 70 (303)
T ss_dssp HHHHHHHHHTTHH-------------HHHHHHHSSCCTTCCSHHHHCSCSSCSC-----HHHHHHHHHHHHCHHHHHSSH
T ss_pred HHHHHHHHHHcCc-------------HHHHHHHHHhhhccccccccccCCCCCC-----HHHHHHHHHHhhCHHHHHcCC
Confidence 3344466667788 7777777776544210 00112334 7788999998877 68999
Q ss_pred hhhhhhhhhhchhcchhhhhHHHHhhhhchhHHhhhhccCCccccccccccccCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 005451 305 CSSLCADYCINSVASSNGTCEKCRHLMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVF 384 (696)
Q Consensus 305 ~p~L~~~~~~~~~a~~F~~Ye~~k~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~lAG~vAG~i 384 (696)
.+++++.....++ +|++||.+|+.+.+. . . ..+....+++|++||++
T Consensus 71 ~~~l~~~~~~~~i--~f~~ye~~k~~~~~~------------------------~----~---~~~~~~~~~ag~~ag~~ 117 (303)
T 2lck_A 71 VAGLQRQMSFASV--RIGLYDSVKQFYTKG------------------------S----E---HAGIGSRLLAGSTTGAL 117 (303)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHHHHSCC------------------------C----S---SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcC------------------------C----c---CCcHHHHHHHHHHHHHH
Confidence 9999998888888 999999999987211 0 0 12456789999999999
Q ss_pred HHHHHhHHHHHHHHHhcCCC-----CCCcHHHHHHHHHhhcCccccccCcHHHHHhhhhhhhhhhhhhHhhhcccCCCCC
Q 005451 385 VSLCLHPVDTVKTVIQSCHT-----EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLP 459 (696)
Q Consensus 385 s~li~~PlD~IKtRlQ~~~~-----~~~s~~~~ik~I~r~eG~rGLYRGl~~tllr~vp~sai~f~~Ye~lK~~l~~~~~ 459 (696)
+.++++|+|+||+|||++.. .++++++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+...
T Consensus 118 ~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~ 197 (303)
T 2lck_A 118 AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197 (303)
T ss_dssp HHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred HHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999753 5789999999999999999999999999999999999999999999998876544
Q ss_pred CccchHHHHHHHHHHHHhhhhhcchhhhhhhhhhccc--CCCCHHHHHHHHHHcCCccccccccccccccccccchhhHh
Q 005451 460 KEFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS--RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSIVKFY 537 (696)
Q Consensus 460 ~~~~~~~~~laG~lAg~va~~vt~PlDvIKtRlQ~~~--~y~~~~~~l~~I~r~eGirgLYrG~~p~llr~~p~~ai~f~ 537 (696)
........+++|++||++++++++|+|+||+|||++. .|.++++++++|+++||++|||||+.|+++|.+|..+++|.
T Consensus 198 ~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~ 277 (303)
T 2lck_A 198 MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFV 277 (303)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHH
Confidence 4455678899999999999999999999999999875 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcC
Q 005451 538 TYESLKQMMLP 548 (696)
Q Consensus 538 ~YE~lk~~l~~ 548 (696)
+||.+|+.+.+
T Consensus 278 ~ye~~k~~l~~ 288 (303)
T 2lck_A 278 TYEQLKRALMA 288 (303)
T ss_dssp HHHHHHSCCCC
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.3e-38 Score=330.75 Aligned_cols=266 Identities=17% Similarity=0.228 Sum_probs=212.9
Q ss_pred CCcccccccCCCCCCCCCCCcccCCCCccccCCCcccccchhc-ccccccCCchhHHHHHHHhhhhccCC---ccccchh
Q 005451 231 GCAGASISGDTLSPASKPATEDHNKSDLSKSKGQSSCFNAKLM-MSTRTTKSLLSDYFLKDVSDMKEDCD---VTRQPCS 306 (696)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~-~~~~~~~~l~~~~~l~~~~~i~~~~G---l~RGl~p 306 (696)
|+.|.+++...++| +|-+|+..|.++.... ...+...+ +++++++|++.+| ||||+.+
T Consensus 14 G~~ag~~~~~~~~P-------------ld~vKtrlQ~~~~~~~~~~~~~~~~-----~~~~~~~i~~~eG~~glyrG~~~ 75 (297)
T 1okc_A 14 GGVAAAISKTAVAP-------------IERVKLLLQVQHASKQISAEKQYKG-----IIDCVVRIPKEQGFLSFWRGNLA 75 (297)
T ss_dssp HHHHHHHHHHHTHH-------------HHHHHHHHHHGGGCSSCCGGGSCCS-----HHHHHHHHHHHHCGGGGGTTTHH
T ss_pred HHHHHHHHHHhcCc-------------HHHHHHHHHhccccccccccccccc-----HHHHHHHHHhccchhheecccHH
Confidence 34344466667788 7777887776543210 11122334 6788888887765 7999999
Q ss_pred hhhhhhhhchhcchhhhhHHHHhhhhchhHHhhhhccCCccccccccccccCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 005451 307 SLCADYCINSVASSNGTCEKCRHLMDDDALLENKRNQSDKNVVEDENKMEFHSPKTEKPHLSLAKQEHAFAGALAGVFVS 386 (696)
Q Consensus 307 ~L~~~~~~~~~a~~F~~Ye~~k~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~lAG~vAG~is~ 386 (696)
++++.....++ +|++||.+++.+... .+. ...........+++|++||+++.
T Consensus 76 ~l~~~~~~~~~--~f~~ye~~k~~~~~~---~~~-----------------------~~~~~~~~~~~~~ag~~ag~~~~ 127 (297)
T 1okc_A 76 NVIRYFPTQAL--NFAFKDKYKQIFLGG---VDR-----------------------HKQFWRYFAGNLASGGAAGATSL 127 (297)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHTT---CCT-----------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhccc---cCc-----------------------ccchHHHHHHHHHHHHHHHHHHH
Confidence 99998877887 999999999954111 000 00111245678999999999999
Q ss_pred HHHhHHHHHHHHHhcCCC------CCCcHHHHHHHHHhhcCccccccCcHHHHHhhhhhhhhhhhhhHhhhcccCCCCCC
Q 005451 387 LCLHPVDTVKTVIQSCHT------EQKSIVYIGRSIVSERGLTGLYRGIASNIASSAPISAVYAFTYESVKGALLPHLPK 460 (696)
Q Consensus 387 li~~PlD~IKtRlQ~~~~------~~~s~~~~ik~I~r~eG~rGLYRGl~~tllr~vp~sai~f~~Ye~lK~~l~~~~~~ 460 (696)
++++|+|+||+|||++.. .++++++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+. .
T Consensus 128 ~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~ 205 (297)
T 1okc_A 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--K 205 (297)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--G
T ss_pred HHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--C
Confidence 999999999999998742 46899999999999999999999999999999999999999999999977532 2
Q ss_pred ccchHHHHHHHHHHHHhhhhhcchhhhhhhhhhccc-------CCCCHHHHHHHHHHcCCccccccccccccccccccch
Q 005451 461 EFHSLAHCTAGGCASVATSFIFTPSERIKQQMQVGS-------RYHNCWNALVGIIKNGGLHSLYAGWGAVLCRNVPHSI 533 (696)
Q Consensus 461 ~~~~~~~~laG~lAg~va~~vt~PlDvIKtRlQ~~~-------~y~~~~~~l~~I~r~eGirgLYrG~~p~llr~~p~~a 533 (696)
....+..+++|++||++++++++|+|+||+|||++. .|.++++++++|+++||++|||||+.|+++|. +..+
T Consensus 206 ~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~ 284 (297)
T 1okc_A 206 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGA 284 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccce
Confidence 345677899999999999999999999999999863 48999999999999999999999999999995 5789
Q ss_pred hhHhhHHHHHHh
Q 005451 534 VKFYTYESLKQM 545 (696)
Q Consensus 534 i~f~~YE~lk~~ 545 (696)
++|.+||.+|+.
T Consensus 285 ~~f~~ye~~k~~ 296 (297)
T 1okc_A 285 FVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHTC---
T ss_pred eeehHHHHHHhh
Confidence 999999998865
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=11.03 E-value=2.1e+02 Score=23.88 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005451 612 GLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVFS 646 (696)
Q Consensus 612 Gi~GLYRGl~~~llr~vp~~al~f~~YE~lk~~l~ 646 (696)
|+-..+|-+...++..+|..++.+.+|++.++...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55556677778889999999999999999998765
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=7.26 E-value=3.3e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=30.8
Q ss_pred hCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005451 611 EGLKGLYRGLIPRLVMYMSQGALFFASYEFFKGVFS 646 (696)
Q Consensus 611 EGi~GLYRGl~~~llr~vp~~al~f~~YE~lk~~l~ 646 (696)
.|+-..+|-+.-.++..+|..++.+.+|++.++...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 466677888888899999999999999999998765
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=6.67 E-value=2.2e+02 Score=23.48 Aligned_cols=35 Identities=11% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHhhCc----ccccccHHHHHHHHH
Q 005451 594 TSQYSSVYHALQEIGKREGL----KGLYRGLIPRLVMYM 628 (696)
Q Consensus 594 ~~~y~gv~~~~r~I~r~EGi----~GLYRGl~~~llr~v 628 (696)
.+++.++-+-+..++.+-|+ ++.|.||+..+.|..
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 45677777777788888887 458999998887764
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=5.97 E-value=2.9e+02 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 005451 390 HPVDTVKTVIQSCHTEQKSIVYIGRSIV 417 (696)
Q Consensus 390 ~PlD~IKtRlQ~~~~~~~s~~~~ik~I~ 417 (696)
.-+..||||+|+-.+.-..+...-++|.
T Consensus 9 qrlaaiktrlqalggseaelaafekeia 36 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGSEAELAAFEKEIA 36 (73)
T ss_dssp HHHHHHHHHHHHCSSGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4566799999986654444444444443
No 9
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=5.32 E-value=99 Score=19.26 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=8.7
Q ss_pred cccchhhhcccc
Q 005451 190 QLGNVHRWMTEK 201 (696)
Q Consensus 190 ~~~~~~~~~~~~ 201 (696)
+.+.+.+||++.
T Consensus 6 qvDSV~rWmeDL 17 (22)
T 3ro3_B 6 QVDSVQRWMEDL 17 (26)
T ss_pred hhHHHHHHHHHH
Confidence 456788999863
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=4.95 E-value=2.8e+02 Score=28.37 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=28.1
Q ss_pred hhhhhcccHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHhhCcccccccHHHHHHHHH
Q 005451 571 TAALFTTPFDVVKTRLQTQIPGSTSQYSSVYHALQEIGKREGLKGLYRGLIPRLVMYM 628 (696)
Q Consensus 571 ~a~~it~PlDvVKTRlQ~q~~~~~~~y~gv~~~~r~I~r~EGi~GLYRGl~~~llr~v 628 (696)
++++=-||||.+|-.++.. -++...+++.++++| ||+-+...-+|..
T Consensus 274 LaTFdnypfdllRfqL~Sl--------istp~~I~e~i~K~G---LFk~it~~~~rg~ 320 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL--------ISTPALIREKIAKEG---LFKIITSNTLRGA 320 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC--------CCCCHHHHHHHHHSC---SEEECC-------
T ss_pred eecCCCCCHHHHHHHhhhh--------ccChHHHHHHHHhcC---ceEEEecccccCC
Confidence 4566789999998777644 133456788888887 6666666555544
Done!